Multiple sequence alignment - TraesCS3B01G222900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G222900 chr3B 100.000 5977 0 0 1 5977 286888885 286894861 0.000000e+00 11038.0
1 TraesCS3B01G222900 chr3B 82.682 179 27 4 482 659 648405237 648405062 8.020000e-34 156.0
2 TraesCS3B01G222900 chr3B 89.583 96 10 0 3979 4074 637089785 637089690 8.130000e-24 122.0
3 TraesCS3B01G222900 chr3D 98.022 4650 74 7 762 5395 213678060 213682707 0.000000e+00 8061.0
4 TraesCS3B01G222900 chr3D 95.652 92 3 1 5413 5504 213682984 213683074 4.830000e-31 147.0
5 TraesCS3B01G222900 chr3D 89.583 96 10 0 3979 4074 477907447 477907352 8.130000e-24 122.0
6 TraesCS3B01G222900 chr3D 89.855 69 2 1 5914 5977 213683131 213683199 3.840000e-12 84.2
7 TraesCS3B01G222900 chr3D 97.872 47 1 0 5505 5551 213683099 213683145 1.380000e-11 82.4
8 TraesCS3B01G222900 chr3A 97.783 3925 67 9 653 4559 278739758 278735836 0.000000e+00 6748.0
9 TraesCS3B01G222900 chr3A 97.065 920 22 2 4590 5504 278735837 278734918 0.000000e+00 1544.0
10 TraesCS3B01G222900 chr3A 95.161 62 2 1 5917 5977 278734858 278734797 4.930000e-16 97.1
11 TraesCS3B01G222900 chr7B 93.803 355 18 4 5554 5908 539212770 539213120 1.140000e-146 531.0
12 TraesCS3B01G222900 chr7B 78.626 262 45 9 399 656 355698606 355698860 4.790000e-36 163.0
13 TraesCS3B01G222900 chr2D 93.036 359 23 2 5552 5910 557269597 557269241 1.910000e-144 523.0
14 TraesCS3B01G222900 chr2D 92.045 88 7 0 3983 4070 86080997 86080910 2.260000e-24 124.0
15 TraesCS3B01G222900 chr2D 91.228 57 1 4 3682 3735 47631359 47631304 2.310000e-09 75.0
16 TraesCS3B01G222900 chr4B 93.017 358 23 2 5552 5909 103550491 103550846 6.860000e-144 521.0
17 TraesCS3B01G222900 chr4B 92.997 357 24 1 5552 5908 500103052 500103407 2.470000e-143 520.0
18 TraesCS3B01G222900 chr4B 93.750 304 16 1 1 304 421860545 421860845 2.540000e-123 453.0
19 TraesCS3B01G222900 chr4B 86.792 371 34 9 290 655 149000640 149001000 3.360000e-107 399.0
20 TraesCS3B01G222900 chr4B 86.523 371 35 9 290 655 149036864 149037224 1.560000e-105 394.0
21 TraesCS3B01G222900 chr4B 89.803 304 31 0 1 304 149000392 149000695 2.020000e-104 390.0
22 TraesCS3B01G222900 chr4B 89.145 304 33 0 1 304 149036616 149036919 4.370000e-101 379.0
23 TraesCS3B01G222900 chr4B 80.000 235 39 8 424 655 422778647 422778876 3.710000e-37 167.0
24 TraesCS3B01G222900 chr4B 93.023 86 6 0 3982 4067 41531416 41531501 6.290000e-25 126.0
25 TraesCS3B01G222900 chr1A 92.717 357 24 2 5552 5908 257991028 257991382 1.150000e-141 514.0
26 TraesCS3B01G222900 chr1A 91.176 374 25 8 288 656 176408561 176408191 8.940000e-138 501.0
27 TraesCS3B01G222900 chr1A 94.079 304 11 1 1 304 176408800 176408504 7.060000e-124 455.0
28 TraesCS3B01G222900 chr2A 92.244 361 25 3 5552 5910 16879451 16879810 5.340000e-140 508.0
29 TraesCS3B01G222900 chr2A 92.635 353 25 1 5552 5904 677752372 677752021 1.920000e-139 507.0
30 TraesCS3B01G222900 chr2A 81.702 235 30 7 56 277 602401703 602401469 3.680000e-42 183.0
31 TraesCS3B01G222900 chr2A 93.182 88 6 0 3983 4070 86440627 86440540 4.860000e-26 130.0
32 TraesCS3B01G222900 chr2A 91.304 46 0 4 3690 3731 468290441 468290396 6.470000e-05 60.2
33 TraesCS3B01G222900 chr2B 91.989 362 27 2 5552 5912 465823922 465823562 1.920000e-139 507.0
34 TraesCS3B01G222900 chr2B 92.179 358 26 2 5552 5909 144080422 144080777 6.910000e-139 505.0
35 TraesCS3B01G222900 chr2B 91.289 287 19 6 290 572 333862653 333862369 2.610000e-103 387.0
36 TraesCS3B01G222900 chr7A 95.578 294 8 2 15 304 629780875 629781167 3.260000e-127 466.0
37 TraesCS3B01G222900 chr7A 94.937 79 3 1 1 78 629780819 629780897 8.130000e-24 122.0
38 TraesCS3B01G222900 chr6B 86.992 369 44 4 290 656 328338064 328337698 4.310000e-111 412.0
39 TraesCS3B01G222900 chr6B 87.459 303 25 6 2 304 328338299 328338010 2.670000e-88 337.0
40 TraesCS3B01G222900 chr6B 80.753 239 36 9 424 658 184999367 184999135 1.710000e-40 178.0
41 TraesCS3B01G222900 chr6B 85.507 69 7 2 3666 3731 431160255 431160187 1.070000e-07 69.4
42 TraesCS3B01G222900 chr6B 85.507 69 7 2 3666 3731 431204133 431204065 1.070000e-07 69.4
43 TraesCS3B01G222900 chr6D 98.276 232 4 0 73 304 16116449 16116218 2.010000e-109 407.0
44 TraesCS3B01G222900 chr6D 95.652 161 4 3 288 445 16116275 16116115 7.690000e-64 255.0
45 TraesCS3B01G222900 chr1B 81.070 243 38 6 424 664 499396895 499397131 2.840000e-43 187.0
46 TraesCS3B01G222900 chr1B 81.897 232 29 7 56 274 146618091 146618322 3.680000e-42 183.0
47 TraesCS3B01G222900 chr5B 80.169 237 37 9 424 656 389233895 389233665 1.030000e-37 169.0
48 TraesCS3B01G222900 chr4A 90.323 93 9 0 3983 4075 27643526 27643618 8.130000e-24 122.0
49 TraesCS3B01G222900 chr7D 88.542 96 9 2 3972 4067 59711387 59711294 1.360000e-21 115.0
50 TraesCS3B01G222900 chr7D 94.444 36 1 1 3694 3728 499888752 499888717 3.000000e-03 54.7
51 TraesCS3B01G222900 chr6A 90.196 51 2 3 3684 3731 115345506 115345456 5.000000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G222900 chr3B 286888885 286894861 5976 False 11038.000000 11038 100.000000 1 5977 1 chr3B.!!$F1 5976
1 TraesCS3B01G222900 chr3D 213678060 213683199 5139 False 2093.650000 8061 95.350250 762 5977 4 chr3D.!!$F1 5215
2 TraesCS3B01G222900 chr3A 278734797 278739758 4961 True 2796.366667 6748 96.669667 653 5977 3 chr3A.!!$R1 5324
3 TraesCS3B01G222900 chr4B 149000392 149001000 608 False 394.500000 399 88.297500 1 655 2 chr4B.!!$F6 654
4 TraesCS3B01G222900 chr4B 149036616 149037224 608 False 386.500000 394 87.834000 1 655 2 chr4B.!!$F7 654
5 TraesCS3B01G222900 chr1A 176408191 176408800 609 True 478.000000 501 92.627500 1 656 2 chr1A.!!$R1 655
6 TraesCS3B01G222900 chr6B 328337698 328338299 601 True 374.500000 412 87.225500 2 656 2 chr6B.!!$R4 654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
701 703 0.036164 TTACCACGAGGCAGCACAAT 59.964 50.000 0.00 0.0 39.06 2.71 F
1682 1690 0.252558 TTCACCAGGGAGGGAGGTAC 60.253 60.000 0.00 0.0 43.89 3.34 F
2681 2689 1.071699 AGAGGGCGTCAACTAAAGCAA 59.928 47.619 10.15 0.0 0.00 3.91 F
3068 3076 0.392193 CAAGACTGCCTCCGATGCTT 60.392 55.000 0.00 0.0 0.00 3.91 F
4559 4580 3.383620 TGCACAAGGTAAATGCTTTGG 57.616 42.857 0.00 0.0 40.13 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2035 2043 0.413832 TCCTTGCTGTAGGAGGGAGT 59.586 55.000 0.06 0.0 39.40 3.85 R
3051 3059 0.326264 AAAAGCATCGGAGGCAGTCT 59.674 50.000 17.58 0.0 0.00 3.24 R
4584 4605 1.003355 CCTGCACCAGAACACCGAT 60.003 57.895 0.00 0.0 32.44 4.18 R
4726 4747 0.099436 CAGCGAAATAACCCAGCAGC 59.901 55.000 0.00 0.0 0.00 5.25 R
5578 5887 0.037303 CCACCAGGCATGAACAGAGT 59.963 55.000 0.00 0.0 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.073897 GCCTGCTCCTTCACCTGTT 59.926 57.895 0.00 0.00 0.00 3.16
46 47 1.135960 CATCCCTCTTCCCTCTTCCC 58.864 60.000 0.00 0.00 0.00 3.97
227 228 1.388837 GGAGAGAGGGAAGTCGAGGC 61.389 65.000 0.00 0.00 0.00 4.70
323 324 4.135153 CGAGGCCCTGGTGACGAG 62.135 72.222 0.00 0.00 0.00 4.18
324 325 4.459089 GAGGCCCTGGTGACGAGC 62.459 72.222 0.00 0.00 0.00 5.03
326 327 4.767255 GGCCCTGGTGACGAGCTG 62.767 72.222 0.00 0.00 0.00 4.24
327 328 4.767255 GCCCTGGTGACGAGCTGG 62.767 72.222 0.00 0.00 38.18 4.85
329 330 2.997315 CCTGGTGACGAGCTGGGA 60.997 66.667 0.00 0.00 35.57 4.37
330 331 2.575993 CTGGTGACGAGCTGGGAG 59.424 66.667 0.00 0.00 0.00 4.30
331 332 2.997315 TGGTGACGAGCTGGGAGG 60.997 66.667 0.00 0.00 0.00 4.30
332 333 2.680352 GGTGACGAGCTGGGAGGA 60.680 66.667 0.00 0.00 0.00 3.71
333 334 2.716017 GGTGACGAGCTGGGAGGAG 61.716 68.421 0.00 0.00 0.00 3.69
334 335 2.363018 TGACGAGCTGGGAGGAGG 60.363 66.667 0.00 0.00 0.00 4.30
335 336 3.151022 GACGAGCTGGGAGGAGGG 61.151 72.222 0.00 0.00 0.00 4.30
336 337 3.663815 GACGAGCTGGGAGGAGGGA 62.664 68.421 0.00 0.00 0.00 4.20
337 338 2.837291 CGAGCTGGGAGGAGGGAG 60.837 72.222 0.00 0.00 0.00 4.30
338 339 2.445654 GAGCTGGGAGGAGGGAGG 60.446 72.222 0.00 0.00 0.00 4.30
339 340 4.101077 AGCTGGGAGGAGGGAGGG 62.101 72.222 0.00 0.00 0.00 4.30
430 431 3.508840 GCGCGAACCAGATTGGGG 61.509 66.667 12.10 0.00 43.37 4.96
461 463 3.656045 CGCGAAAACGGCCAACCT 61.656 61.111 0.00 0.00 0.00 3.50
511 513 1.234821 GTCATTGGCCAGTCGAAACA 58.765 50.000 5.11 0.00 0.00 2.83
539 541 4.274950 CGAGGTGAAAAATGTGGTTACAGT 59.725 41.667 0.00 0.00 40.79 3.55
548 550 3.916359 TGTGGTTACAGTGAGGTGAAA 57.084 42.857 0.00 0.00 31.91 2.69
608 610 2.607635 GGCTAACGAAGATGCAAATCGA 59.392 45.455 21.15 0.00 39.73 3.59
615 617 0.835941 AGATGCAAATCGAGGGAGCT 59.164 50.000 0.00 0.00 0.00 4.09
621 623 1.208052 CAAATCGAGGGAGCTTCCTGA 59.792 52.381 21.72 16.63 37.25 3.86
678 680 1.134670 ACTAGATCTTTCAGCGCCCAC 60.135 52.381 2.29 0.00 0.00 4.61
685 687 0.885196 TTTCAGCGCCCACCATTTAC 59.115 50.000 2.29 0.00 0.00 2.01
687 689 1.677300 CAGCGCCCACCATTTACCA 60.677 57.895 2.29 0.00 0.00 3.25
694 696 0.322098 CCACCATTTACCACGAGGCA 60.322 55.000 0.00 0.00 39.06 4.75
701 703 0.036164 TTACCACGAGGCAGCACAAT 59.964 50.000 0.00 0.00 39.06 2.71
708 710 3.127548 CACGAGGCAGCACAATAAGAATT 59.872 43.478 0.00 0.00 0.00 2.17
709 711 3.758554 ACGAGGCAGCACAATAAGAATTT 59.241 39.130 0.00 0.00 0.00 1.82
747 754 3.057736 GCATCCGCATTCATGAATTAGCT 60.058 43.478 18.41 2.18 38.36 3.32
759 766 7.182361 TCATGAATTAGCTTAAGAATCAGCG 57.818 36.000 6.67 0.00 41.24 5.18
783 790 4.080863 AGTGGCCTACTTTACATTGGAGAG 60.081 45.833 3.32 0.00 35.67 3.20
784 791 4.081087 GTGGCCTACTTTACATTGGAGAGA 60.081 45.833 3.32 0.00 0.00 3.10
793 800 3.853355 ACATTGGAGAGATGACCCATC 57.147 47.619 0.00 0.00 40.80 3.51
907 915 3.605634 TCCCCGATAAACACACAGATTG 58.394 45.455 0.00 0.00 0.00 2.67
1170 1178 2.574399 GTCTTCTCCTCGCCGCTT 59.426 61.111 0.00 0.00 0.00 4.68
1322 1330 3.941188 CACCCCTCACAGCCACGT 61.941 66.667 0.00 0.00 0.00 4.49
1329 1337 4.320456 CACAGCCACGTGCCCTCT 62.320 66.667 10.91 0.90 42.71 3.69
1504 1512 8.619546 GGATCTTACACGATTACACTACTAGTT 58.380 37.037 0.00 0.00 0.00 2.24
1604 1612 6.533367 TCATTTAGTTGGTGTTTTTCACTTGC 59.467 34.615 0.00 0.00 45.50 4.01
1657 1665 2.595009 CTAGCTTGGGGTTCGGAGCC 62.595 65.000 2.29 2.29 42.86 4.70
1682 1690 0.252558 TTCACCAGGGAGGGAGGTAC 60.253 60.000 0.00 0.00 43.89 3.34
1759 1767 6.314784 GGCTTATGTGAATTTGTACTGTGAC 58.685 40.000 0.00 0.00 0.00 3.67
1905 1913 2.037641 TCGATTATGTGCATCCAGGGAG 59.962 50.000 0.00 0.00 0.00 4.30
2035 2043 3.591023 CTTGCATGCATTTGTGGATTCA 58.409 40.909 23.37 0.04 0.00 2.57
2107 2115 5.556915 TCTGTGTATGATTTTTCGGAAGGT 58.443 37.500 0.00 0.00 0.00 3.50
2681 2689 1.071699 AGAGGGCGTCAACTAAAGCAA 59.928 47.619 10.15 0.00 0.00 3.91
2752 2760 1.106285 CTCAAGTAATTGGCCCTGGC 58.894 55.000 0.00 0.00 41.06 4.85
3051 3059 2.892334 GAACTGTCTTGCGCGCCAA 61.892 57.895 30.77 20.82 0.00 4.52
3068 3076 0.392193 CAAGACTGCCTCCGATGCTT 60.392 55.000 0.00 0.00 0.00 3.91
3091 3099 3.959293 TGACATGAGGCTCACAATTGAT 58.041 40.909 21.37 5.12 0.00 2.57
3107 3115 8.236586 TCACAATTGATGAAAGAATTAAGGACG 58.763 33.333 13.59 0.00 0.00 4.79
3741 3751 6.317391 GGAACAGAGGGATATTTGAACAGAAG 59.683 42.308 0.00 0.00 0.00 2.85
3820 3830 6.590677 TGTTTGCAAAAACTAACTTGTTACCC 59.409 34.615 14.67 0.00 33.95 3.69
3873 3883 9.852091 AAGATTTTGCAAGAAATAGAGTGAATC 57.148 29.630 0.00 1.77 29.75 2.52
4011 4022 9.139734 TCCCTCTGTATCAAACTATAATACGTT 57.860 33.333 0.00 0.00 0.00 3.99
4083 4094 6.179040 AGGTAGTACTTGATATACTAGGGCG 58.821 44.000 0.00 0.00 36.13 6.13
4427 4439 7.967908 TCCTTTTCTCTTATCAACTCTTCTGT 58.032 34.615 0.00 0.00 0.00 3.41
4559 4580 3.383620 TGCACAAGGTAAATGCTTTGG 57.616 42.857 0.00 0.00 40.13 3.28
4706 4727 7.476540 TCTCTTAACCTTAGCAGTGACATTA 57.523 36.000 0.00 0.00 0.00 1.90
4726 4747 1.353103 GGTTCGCCTGCATTCATCG 59.647 57.895 0.00 0.00 0.00 3.84
5054 5075 2.096819 TCAAACAGAGTTGCCAAACGAC 59.903 45.455 0.00 0.00 41.45 4.34
5203 5224 3.614092 CATTATCTCTTGCCACACAGGT 58.386 45.455 0.00 0.00 40.61 4.00
5207 5228 2.901840 CTTGCCACACAGGTGCGT 60.902 61.111 0.00 0.00 43.88 5.24
5327 5351 2.159142 TCCTTTTACTCGAGGCGAATCC 60.159 50.000 18.41 0.00 34.74 3.01
5342 5366 3.709987 CGAATCCCAATTCTCCATTTGC 58.290 45.455 0.00 0.00 39.36 3.68
5452 5735 8.489559 CATTACATTTGTTCTTGATTTGTGGTG 58.510 33.333 0.00 0.00 0.00 4.17
5488 5773 8.741101 TCGTGAAAAATGAATTAGTGATTTGG 57.259 30.769 0.00 0.00 0.00 3.28
5538 5847 2.006169 TGTGCACGTGTATAAGCCATG 58.994 47.619 18.38 0.00 0.00 3.66
5539 5848 2.006888 GTGCACGTGTATAAGCCATGT 58.993 47.619 18.38 0.00 32.38 3.21
5540 5849 2.418628 GTGCACGTGTATAAGCCATGTT 59.581 45.455 18.38 0.00 29.78 2.71
5541 5850 2.418280 TGCACGTGTATAAGCCATGTTG 59.582 45.455 18.38 0.00 29.78 3.33
5542 5851 2.791158 GCACGTGTATAAGCCATGTTGC 60.791 50.000 18.38 0.00 29.78 4.17
5543 5852 2.418280 CACGTGTATAAGCCATGTTGCA 59.582 45.455 7.58 0.00 29.78 4.08
5544 5853 2.677836 ACGTGTATAAGCCATGTTGCAG 59.322 45.455 0.00 0.00 0.00 4.41
5545 5854 2.677836 CGTGTATAAGCCATGTTGCAGT 59.322 45.455 0.00 0.00 0.00 4.40
5546 5855 3.242413 CGTGTATAAGCCATGTTGCAGTC 60.242 47.826 0.00 0.00 0.00 3.51
5547 5856 3.689161 GTGTATAAGCCATGTTGCAGTCA 59.311 43.478 0.00 0.00 0.00 3.41
5548 5857 4.336433 GTGTATAAGCCATGTTGCAGTCAT 59.664 41.667 0.00 1.44 0.00 3.06
5549 5858 4.949238 TGTATAAGCCATGTTGCAGTCATT 59.051 37.500 4.13 0.00 0.00 2.57
5550 5859 5.418524 TGTATAAGCCATGTTGCAGTCATTT 59.581 36.000 4.13 1.00 0.00 2.32
5551 5860 3.756933 AAGCCATGTTGCAGTCATTTT 57.243 38.095 4.13 0.00 0.00 1.82
5552 5861 3.034721 AGCCATGTTGCAGTCATTTTG 57.965 42.857 4.13 0.00 0.00 2.44
5553 5862 2.070783 GCCATGTTGCAGTCATTTTGG 58.929 47.619 4.13 5.95 0.00 3.28
5554 5863 2.288948 GCCATGTTGCAGTCATTTTGGA 60.289 45.455 12.92 0.00 0.00 3.53
5555 5864 3.319755 CCATGTTGCAGTCATTTTGGAC 58.680 45.455 4.13 0.00 38.08 4.02
5556 5865 3.243805 CCATGTTGCAGTCATTTTGGACA 60.244 43.478 4.13 0.00 40.29 4.02
5557 5866 3.435105 TGTTGCAGTCATTTTGGACAC 57.565 42.857 0.00 0.00 40.29 3.67
5558 5867 2.223456 TGTTGCAGTCATTTTGGACACG 60.223 45.455 0.00 0.00 40.29 4.49
5559 5868 1.674359 TGCAGTCATTTTGGACACGT 58.326 45.000 0.00 0.00 40.29 4.49
5560 5869 1.601903 TGCAGTCATTTTGGACACGTC 59.398 47.619 0.00 0.00 40.29 4.34
5570 5879 3.253955 GACACGTCCACATGGCAC 58.746 61.111 0.00 0.00 34.44 5.01
5571 5880 2.281484 ACACGTCCACATGGCACC 60.281 61.111 0.00 0.00 34.44 5.01
5572 5881 2.032528 CACGTCCACATGGCACCT 59.967 61.111 0.00 0.00 34.44 4.00
5573 5882 2.032528 ACGTCCACATGGCACCTG 59.967 61.111 0.00 0.00 34.44 4.00
5574 5883 2.032528 CGTCCACATGGCACCTGT 59.967 61.111 0.00 0.00 34.44 4.00
5575 5884 1.600636 CGTCCACATGGCACCTGTT 60.601 57.895 0.00 0.00 34.44 3.16
5576 5885 1.172180 CGTCCACATGGCACCTGTTT 61.172 55.000 0.00 0.00 34.44 2.83
5577 5886 0.314935 GTCCACATGGCACCTGTTTG 59.685 55.000 0.00 0.00 34.44 2.93
5578 5887 0.184692 TCCACATGGCACCTGTTTGA 59.815 50.000 0.00 0.00 34.44 2.69
5579 5888 0.314935 CCACATGGCACCTGTTTGAC 59.685 55.000 0.00 0.00 0.00 3.18
5580 5889 1.321474 CACATGGCACCTGTTTGACT 58.679 50.000 0.00 0.00 0.00 3.41
5581 5890 1.267806 CACATGGCACCTGTTTGACTC 59.732 52.381 0.00 0.00 0.00 3.36
5582 5891 1.143684 ACATGGCACCTGTTTGACTCT 59.856 47.619 0.00 0.00 0.00 3.24
5583 5892 1.538512 CATGGCACCTGTTTGACTCTG 59.461 52.381 0.00 0.00 0.00 3.35
5584 5893 0.546122 TGGCACCTGTTTGACTCTGT 59.454 50.000 0.00 0.00 0.00 3.41
5585 5894 1.064758 TGGCACCTGTTTGACTCTGTT 60.065 47.619 0.00 0.00 0.00 3.16
5586 5895 1.604278 GGCACCTGTTTGACTCTGTTC 59.396 52.381 0.00 0.00 0.00 3.18
5587 5896 2.288666 GCACCTGTTTGACTCTGTTCA 58.711 47.619 0.00 0.00 0.00 3.18
5588 5897 2.880890 GCACCTGTTTGACTCTGTTCAT 59.119 45.455 0.00 0.00 0.00 2.57
5589 5898 3.304257 GCACCTGTTTGACTCTGTTCATG 60.304 47.826 0.00 0.00 0.00 3.07
5590 5899 2.880890 ACCTGTTTGACTCTGTTCATGC 59.119 45.455 0.00 0.00 0.00 4.06
5591 5900 2.227388 CCTGTTTGACTCTGTTCATGCC 59.773 50.000 0.00 0.00 0.00 4.40
5592 5901 3.144506 CTGTTTGACTCTGTTCATGCCT 58.855 45.455 0.00 0.00 0.00 4.75
5593 5902 2.880268 TGTTTGACTCTGTTCATGCCTG 59.120 45.455 0.00 0.00 0.00 4.85
5594 5903 2.189594 TTGACTCTGTTCATGCCTGG 57.810 50.000 0.00 0.00 0.00 4.45
5595 5904 1.059098 TGACTCTGTTCATGCCTGGT 58.941 50.000 0.00 0.00 0.00 4.00
5596 5905 1.271001 TGACTCTGTTCATGCCTGGTG 60.271 52.381 0.00 0.00 0.00 4.17
5597 5906 0.037303 ACTCTGTTCATGCCTGGTGG 59.963 55.000 0.00 0.00 0.00 4.61
5598 5907 0.679002 CTCTGTTCATGCCTGGTGGG 60.679 60.000 0.00 0.00 38.36 4.61
5607 5916 4.415150 CCTGGTGGGCGAGCACAT 62.415 66.667 2.42 0.00 0.00 3.21
5608 5917 3.129502 CTGGTGGGCGAGCACATG 61.130 66.667 2.42 0.00 0.00 3.21
5611 5920 4.107051 GTGGGCGAGCACATGCAC 62.107 66.667 2.42 0.00 45.16 4.57
5614 5923 4.107051 GGCGAGCACATGCACCAC 62.107 66.667 6.64 0.00 45.16 4.16
5615 5924 3.356267 GCGAGCACATGCACCACA 61.356 61.111 6.64 0.00 45.16 4.17
5616 5925 2.865308 CGAGCACATGCACCACAG 59.135 61.111 6.64 0.00 45.16 3.66
5617 5926 2.683859 CGAGCACATGCACCACAGG 61.684 63.158 6.64 0.00 45.16 4.00
5618 5927 2.986306 GAGCACATGCACCACAGGC 61.986 63.158 6.64 0.00 45.16 4.85
5619 5928 3.296836 GCACATGCACCACAGGCA 61.297 61.111 0.00 0.00 46.66 4.75
5620 5929 2.646719 CACATGCACCACAGGCAC 59.353 61.111 0.00 0.00 45.23 5.01
5621 5930 2.598394 ACATGCACCACAGGCACC 60.598 61.111 0.00 0.00 45.23 5.01
5622 5931 2.598099 CATGCACCACAGGCACCA 60.598 61.111 0.00 0.00 45.23 4.17
5623 5932 1.980232 CATGCACCACAGGCACCAT 60.980 57.895 0.00 0.00 45.23 3.55
5624 5933 1.679977 ATGCACCACAGGCACCATC 60.680 57.895 0.00 0.00 45.23 3.51
5625 5934 3.434319 GCACCACAGGCACCATCG 61.434 66.667 0.00 0.00 0.00 3.84
5626 5935 2.347114 CACCACAGGCACCATCGA 59.653 61.111 0.00 0.00 0.00 3.59
5627 5936 2.034879 CACCACAGGCACCATCGAC 61.035 63.158 0.00 0.00 0.00 4.20
5628 5937 2.347114 CCACAGGCACCATCGACA 59.653 61.111 0.00 0.00 0.00 4.35
5629 5938 1.742880 CCACAGGCACCATCGACAG 60.743 63.158 0.00 0.00 0.00 3.51
5630 5939 1.293179 CACAGGCACCATCGACAGA 59.707 57.895 0.00 0.00 0.00 3.41
5631 5940 0.320683 CACAGGCACCATCGACAGAA 60.321 55.000 0.00 0.00 0.00 3.02
5632 5941 0.396435 ACAGGCACCATCGACAGAAA 59.604 50.000 0.00 0.00 0.00 2.52
5633 5942 1.202758 ACAGGCACCATCGACAGAAAA 60.203 47.619 0.00 0.00 0.00 2.29
5634 5943 1.466167 CAGGCACCATCGACAGAAAAG 59.534 52.381 0.00 0.00 0.00 2.27
5635 5944 0.169009 GGCACCATCGACAGAAAAGC 59.831 55.000 0.00 0.00 0.00 3.51
5636 5945 0.874390 GCACCATCGACAGAAAAGCA 59.126 50.000 0.00 0.00 0.00 3.91
5637 5946 1.266718 GCACCATCGACAGAAAAGCAA 59.733 47.619 0.00 0.00 0.00 3.91
5638 5947 2.287547 GCACCATCGACAGAAAAGCAAA 60.288 45.455 0.00 0.00 0.00 3.68
5639 5948 3.558505 CACCATCGACAGAAAAGCAAAG 58.441 45.455 0.00 0.00 0.00 2.77
5640 5949 2.554032 ACCATCGACAGAAAAGCAAAGG 59.446 45.455 0.00 0.00 0.00 3.11
5641 5950 2.589014 CATCGACAGAAAAGCAAAGGC 58.411 47.619 0.00 0.00 41.61 4.35
5642 5951 1.674359 TCGACAGAAAAGCAAAGGCA 58.326 45.000 0.00 0.00 44.61 4.75
5643 5952 2.229792 TCGACAGAAAAGCAAAGGCAT 58.770 42.857 0.00 0.00 44.61 4.40
5644 5953 2.226437 TCGACAGAAAAGCAAAGGCATC 59.774 45.455 0.00 0.00 44.61 3.91
5645 5954 2.589014 GACAGAAAAGCAAAGGCATCG 58.411 47.619 0.00 0.00 44.61 3.84
5646 5955 2.226437 GACAGAAAAGCAAAGGCATCGA 59.774 45.455 0.00 0.00 44.61 3.59
5647 5956 2.821969 ACAGAAAAGCAAAGGCATCGAT 59.178 40.909 0.00 0.00 44.61 3.59
5648 5957 3.256631 ACAGAAAAGCAAAGGCATCGATT 59.743 39.130 0.00 0.00 44.61 3.34
5649 5958 4.458989 ACAGAAAAGCAAAGGCATCGATTA 59.541 37.500 0.00 0.00 44.61 1.75
5650 5959 4.795278 CAGAAAAGCAAAGGCATCGATTAC 59.205 41.667 0.00 0.00 44.61 1.89
5651 5960 3.782889 AAAGCAAAGGCATCGATTACC 57.217 42.857 0.00 0.00 44.61 2.85
5652 5961 2.418368 AGCAAAGGCATCGATTACCA 57.582 45.000 15.00 0.00 44.61 3.25
5653 5962 2.936202 AGCAAAGGCATCGATTACCAT 58.064 42.857 15.00 2.07 44.61 3.55
5654 5963 2.620115 AGCAAAGGCATCGATTACCATG 59.380 45.455 15.00 13.49 44.61 3.66
5655 5964 2.859806 GCAAAGGCATCGATTACCATGC 60.860 50.000 20.08 20.08 44.06 4.06
5656 5965 2.620115 CAAAGGCATCGATTACCATGCT 59.380 45.455 15.00 0.00 44.20 3.79
5657 5966 3.769739 AAGGCATCGATTACCATGCTA 57.230 42.857 15.00 0.00 44.20 3.49
5658 5967 3.325293 AGGCATCGATTACCATGCTAG 57.675 47.619 15.00 0.00 44.20 3.42
5659 5968 2.634940 AGGCATCGATTACCATGCTAGT 59.365 45.455 15.00 0.00 44.20 2.57
5660 5969 2.738846 GGCATCGATTACCATGCTAGTG 59.261 50.000 8.99 0.00 44.20 2.74
5661 5970 3.393800 GCATCGATTACCATGCTAGTGT 58.606 45.455 0.00 0.00 41.93 3.55
5662 5971 3.430218 GCATCGATTACCATGCTAGTGTC 59.570 47.826 0.00 0.00 41.93 3.67
5663 5972 4.620982 CATCGATTACCATGCTAGTGTCA 58.379 43.478 0.00 0.00 0.00 3.58
5664 5973 4.937201 TCGATTACCATGCTAGTGTCAT 57.063 40.909 0.00 0.00 0.00 3.06
5665 5974 4.620982 TCGATTACCATGCTAGTGTCATG 58.379 43.478 2.72 2.72 40.60 3.07
5674 5983 5.758924 CATGCTAGTGTCATGGATCAATTG 58.241 41.667 0.00 0.00 38.06 2.32
5675 5984 4.201657 TGCTAGTGTCATGGATCAATTGG 58.798 43.478 5.42 0.00 0.00 3.16
5676 5985 4.080413 TGCTAGTGTCATGGATCAATTGGA 60.080 41.667 5.42 0.00 0.00 3.53
5677 5986 4.883585 GCTAGTGTCATGGATCAATTGGAA 59.116 41.667 5.42 0.00 0.00 3.53
5678 5987 5.533903 GCTAGTGTCATGGATCAATTGGAAT 59.466 40.000 5.42 0.00 0.00 3.01
5679 5988 5.847111 AGTGTCATGGATCAATTGGAATG 57.153 39.130 5.42 5.14 0.00 2.67
5680 5989 5.512298 AGTGTCATGGATCAATTGGAATGA 58.488 37.500 5.42 7.27 0.00 2.57
5681 5990 5.593095 AGTGTCATGGATCAATTGGAATGAG 59.407 40.000 5.42 0.00 0.00 2.90
5682 5991 4.340097 TGTCATGGATCAATTGGAATGAGC 59.660 41.667 5.42 6.11 32.58 4.26
5683 5992 4.340097 GTCATGGATCAATTGGAATGAGCA 59.660 41.667 5.42 0.00 34.97 4.26
5684 5993 4.340097 TCATGGATCAATTGGAATGAGCAC 59.660 41.667 5.42 0.00 34.97 4.40
5685 5994 3.699413 TGGATCAATTGGAATGAGCACA 58.301 40.909 5.42 0.00 34.97 4.57
5686 5995 4.087907 TGGATCAATTGGAATGAGCACAA 58.912 39.130 5.42 0.00 34.97 3.33
5687 5996 4.712829 TGGATCAATTGGAATGAGCACAAT 59.287 37.500 5.42 0.00 34.97 2.71
5688 5997 5.163488 TGGATCAATTGGAATGAGCACAATC 60.163 40.000 5.42 0.00 34.97 2.67
5689 5998 4.359971 TCAATTGGAATGAGCACAATCG 57.640 40.909 5.42 0.00 34.00 3.34
5690 5999 2.855963 CAATTGGAATGAGCACAATCGC 59.144 45.455 0.00 0.00 34.00 4.58
5691 6000 1.532523 TTGGAATGAGCACAATCGCA 58.467 45.000 0.00 0.00 0.00 5.10
5692 6001 1.532523 TGGAATGAGCACAATCGCAA 58.467 45.000 0.00 0.00 0.00 4.85
5693 6002 1.469703 TGGAATGAGCACAATCGCAAG 59.530 47.619 0.00 0.00 0.00 4.01
5705 6014 3.999821 TCGCAAGAGTGTTTAGGCA 57.000 47.368 0.00 0.00 45.01 4.75
5706 6015 2.248280 TCGCAAGAGTGTTTAGGCAA 57.752 45.000 0.00 0.00 45.01 4.52
5707 6016 2.566913 TCGCAAGAGTGTTTAGGCAAA 58.433 42.857 0.00 0.00 45.01 3.68
5708 6017 2.946329 TCGCAAGAGTGTTTAGGCAAAA 59.054 40.909 0.00 0.00 45.01 2.44
5709 6018 3.378742 TCGCAAGAGTGTTTAGGCAAAAA 59.621 39.130 0.00 0.00 45.01 1.94
5723 6032 4.251246 AAAAAGTGCACCTCCGCA 57.749 50.000 14.63 0.00 40.32 5.69
5724 6033 2.499214 AAAAAGTGCACCTCCGCAA 58.501 47.368 14.63 0.00 45.14 4.85
5725 6034 0.820871 AAAAAGTGCACCTCCGCAAA 59.179 45.000 14.63 0.00 45.14 3.68
5726 6035 1.039856 AAAAGTGCACCTCCGCAAAT 58.960 45.000 14.63 0.00 45.14 2.32
5727 6036 0.598065 AAAGTGCACCTCCGCAAATC 59.402 50.000 14.63 0.00 45.14 2.17
5728 6037 0.250901 AAGTGCACCTCCGCAAATCT 60.251 50.000 14.63 0.00 45.14 2.40
5729 6038 0.250901 AGTGCACCTCCGCAAATCTT 60.251 50.000 14.63 0.00 45.14 2.40
5730 6039 0.109597 GTGCACCTCCGCAAATCTTG 60.110 55.000 5.22 0.00 45.14 3.02
5744 6053 4.993905 CAAATCTTGCTCAGCATCATTGA 58.006 39.130 0.00 0.00 38.76 2.57
5745 6054 5.407502 CAAATCTTGCTCAGCATCATTGAA 58.592 37.500 0.00 0.00 38.76 2.69
5746 6055 4.902443 ATCTTGCTCAGCATCATTGAAG 57.098 40.909 0.00 0.00 38.76 3.02
5747 6056 3.946606 TCTTGCTCAGCATCATTGAAGA 58.053 40.909 0.00 0.00 38.76 2.87
5748 6057 3.688185 TCTTGCTCAGCATCATTGAAGAC 59.312 43.478 0.00 0.00 38.76 3.01
5749 6058 2.004733 TGCTCAGCATCATTGAAGACG 58.995 47.619 0.00 0.00 31.71 4.18
5750 6059 2.274437 GCTCAGCATCATTGAAGACGA 58.726 47.619 0.00 0.00 0.00 4.20
5751 6060 2.284684 GCTCAGCATCATTGAAGACGAG 59.715 50.000 0.00 0.00 0.00 4.18
5752 6061 2.864946 CTCAGCATCATTGAAGACGAGG 59.135 50.000 0.00 0.00 0.00 4.63
5753 6062 1.329906 CAGCATCATTGAAGACGAGGC 59.670 52.381 0.00 0.00 36.74 4.70
5754 6063 1.065926 AGCATCATTGAAGACGAGGCA 60.066 47.619 0.00 0.00 38.84 4.75
5755 6064 1.739466 GCATCATTGAAGACGAGGCAA 59.261 47.619 0.00 0.00 36.52 4.52
5756 6065 2.162208 GCATCATTGAAGACGAGGCAAA 59.838 45.455 0.00 0.00 36.52 3.68
5757 6066 3.751621 CATCATTGAAGACGAGGCAAAC 58.248 45.455 0.00 0.00 0.00 2.93
5758 6067 2.151202 TCATTGAAGACGAGGCAAACC 58.849 47.619 0.00 0.00 0.00 3.27
5772 6081 4.271696 GGCAAACCTTTGGATTAAAGCT 57.728 40.909 0.11 0.00 43.58 3.74
5773 6082 3.996363 GGCAAACCTTTGGATTAAAGCTG 59.004 43.478 0.00 0.00 43.58 4.24
5774 6083 3.433274 GCAAACCTTTGGATTAAAGCTGC 59.567 43.478 0.00 0.00 43.58 5.25
5775 6084 3.575965 AACCTTTGGATTAAAGCTGCG 57.424 42.857 0.00 0.00 43.58 5.18
5776 6085 1.818674 ACCTTTGGATTAAAGCTGCGG 59.181 47.619 0.00 0.00 43.58 5.69
5777 6086 1.469767 CCTTTGGATTAAAGCTGCGGC 60.470 52.381 10.33 10.33 43.58 6.53
5778 6087 1.202114 CTTTGGATTAAAGCTGCGGCA 59.798 47.619 21.93 1.29 39.36 5.69
5779 6088 1.252175 TTGGATTAAAGCTGCGGCAA 58.748 45.000 21.93 5.66 41.70 4.52
5780 6089 1.252175 TGGATTAAAGCTGCGGCAAA 58.748 45.000 21.93 11.30 41.70 3.68
5781 6090 1.202114 TGGATTAAAGCTGCGGCAAAG 59.798 47.619 21.93 0.00 41.70 2.77
5782 6091 1.472480 GGATTAAAGCTGCGGCAAAGA 59.528 47.619 21.93 2.99 41.70 2.52
5783 6092 2.094752 GGATTAAAGCTGCGGCAAAGAA 60.095 45.455 21.93 8.43 41.70 2.52
5784 6093 3.574614 GATTAAAGCTGCGGCAAAGAAA 58.425 40.909 21.93 6.77 41.70 2.52
5785 6094 3.658757 TTAAAGCTGCGGCAAAGAAAT 57.341 38.095 21.93 0.00 41.70 2.17
5786 6095 2.531522 AAAGCTGCGGCAAAGAAATT 57.468 40.000 21.93 0.00 41.70 1.82
5787 6096 3.658757 AAAGCTGCGGCAAAGAAATTA 57.341 38.095 21.93 0.00 41.70 1.40
5788 6097 2.927553 AGCTGCGGCAAAGAAATTAG 57.072 45.000 21.93 0.00 41.70 1.73
5789 6098 1.474077 AGCTGCGGCAAAGAAATTAGG 59.526 47.619 21.93 0.00 41.70 2.69
5790 6099 1.469767 GCTGCGGCAAAGAAATTAGGG 60.470 52.381 14.08 0.00 38.54 3.53
5791 6100 1.818674 CTGCGGCAAAGAAATTAGGGT 59.181 47.619 3.44 0.00 0.00 4.34
5792 6101 1.816224 TGCGGCAAAGAAATTAGGGTC 59.184 47.619 0.00 0.00 0.00 4.46
5793 6102 2.092323 GCGGCAAAGAAATTAGGGTCT 58.908 47.619 0.00 0.00 0.00 3.85
5794 6103 2.492088 GCGGCAAAGAAATTAGGGTCTT 59.508 45.455 0.00 0.00 35.59 3.01
5795 6104 3.056821 GCGGCAAAGAAATTAGGGTCTTT 60.057 43.478 0.00 0.00 43.26 2.52
5796 6105 4.560716 GCGGCAAAGAAATTAGGGTCTTTT 60.561 41.667 0.00 0.00 41.12 2.27
5797 6106 5.538118 CGGCAAAGAAATTAGGGTCTTTTT 58.462 37.500 0.98 0.00 41.12 1.94
5820 6129 7.912949 TTTATTGCGAGAATAATTGTCATGC 57.087 32.000 0.00 0.00 0.00 4.06
5821 6130 3.969117 TGCGAGAATAATTGTCATGCC 57.031 42.857 0.00 0.00 0.00 4.40
5822 6131 2.287644 TGCGAGAATAATTGTCATGCCG 59.712 45.455 0.00 0.00 0.00 5.69
5823 6132 2.287915 GCGAGAATAATTGTCATGCCGT 59.712 45.455 0.00 0.00 0.00 5.68
5824 6133 3.493129 GCGAGAATAATTGTCATGCCGTA 59.507 43.478 0.00 0.00 0.00 4.02
5825 6134 4.025229 GCGAGAATAATTGTCATGCCGTAA 60.025 41.667 0.00 0.00 0.00 3.18
5826 6135 5.432157 CGAGAATAATTGTCATGCCGTAAC 58.568 41.667 0.00 0.00 0.00 2.50
5827 6136 5.234329 CGAGAATAATTGTCATGCCGTAACT 59.766 40.000 0.00 0.00 0.00 2.24
5828 6137 6.238103 CGAGAATAATTGTCATGCCGTAACTT 60.238 38.462 0.00 0.00 0.00 2.66
5829 6138 6.785191 AGAATAATTGTCATGCCGTAACTTG 58.215 36.000 0.00 0.00 0.00 3.16
5830 6139 3.848272 AATTGTCATGCCGTAACTTGG 57.152 42.857 0.00 0.00 0.00 3.61
5831 6140 2.552599 TTGTCATGCCGTAACTTGGA 57.447 45.000 0.00 0.00 0.00 3.53
5832 6141 2.779755 TGTCATGCCGTAACTTGGAT 57.220 45.000 0.00 0.00 0.00 3.41
5833 6142 2.355197 TGTCATGCCGTAACTTGGATG 58.645 47.619 0.00 0.00 0.00 3.51
5834 6143 2.290008 TGTCATGCCGTAACTTGGATGT 60.290 45.455 0.00 0.00 0.00 3.06
5835 6144 2.095853 GTCATGCCGTAACTTGGATGTG 59.904 50.000 0.00 0.00 0.00 3.21
5836 6145 2.083774 CATGCCGTAACTTGGATGTGT 58.916 47.619 0.00 0.00 0.00 3.72
5837 6146 1.518325 TGCCGTAACTTGGATGTGTG 58.482 50.000 0.00 0.00 0.00 3.82
5838 6147 1.202710 TGCCGTAACTTGGATGTGTGT 60.203 47.619 0.00 0.00 0.00 3.72
5839 6148 1.877443 GCCGTAACTTGGATGTGTGTT 59.123 47.619 0.00 0.00 0.00 3.32
5840 6149 2.350388 GCCGTAACTTGGATGTGTGTTG 60.350 50.000 0.00 0.00 0.00 3.33
5841 6150 2.875933 CCGTAACTTGGATGTGTGTTGT 59.124 45.455 0.00 0.00 0.00 3.32
5842 6151 4.059511 CCGTAACTTGGATGTGTGTTGTA 58.940 43.478 0.00 0.00 0.00 2.41
5843 6152 4.512198 CCGTAACTTGGATGTGTGTTGTAA 59.488 41.667 0.00 0.00 0.00 2.41
5844 6153 5.437263 CGTAACTTGGATGTGTGTTGTAAC 58.563 41.667 0.00 0.00 0.00 2.50
5845 6154 5.006844 CGTAACTTGGATGTGTGTTGTAACA 59.993 40.000 0.00 0.00 36.38 2.41
5846 6155 5.906113 AACTTGGATGTGTGTTGTAACAA 57.094 34.783 0.00 0.00 41.21 2.83
5847 6156 5.906113 ACTTGGATGTGTGTTGTAACAAA 57.094 34.783 0.00 0.00 41.21 2.83
5848 6157 5.646606 ACTTGGATGTGTGTTGTAACAAAC 58.353 37.500 10.43 10.43 45.37 2.93
5849 6158 5.417580 ACTTGGATGTGTGTTGTAACAAACT 59.582 36.000 16.56 5.13 45.37 2.66
5850 6159 5.493133 TGGATGTGTGTTGTAACAAACTC 57.507 39.130 16.56 11.82 45.37 3.01
5851 6160 5.189928 TGGATGTGTGTTGTAACAAACTCT 58.810 37.500 16.56 6.54 45.37 3.24
5852 6161 5.295787 TGGATGTGTGTTGTAACAAACTCTC 59.704 40.000 16.56 13.06 45.37 3.20
5853 6162 5.527582 GGATGTGTGTTGTAACAAACTCTCT 59.472 40.000 16.56 2.52 45.37 3.10
5854 6163 6.292919 GGATGTGTGTTGTAACAAACTCTCTC 60.293 42.308 16.56 9.40 45.37 3.20
5855 6164 5.730550 TGTGTGTTGTAACAAACTCTCTCT 58.269 37.500 16.56 0.00 45.37 3.10
5856 6165 5.810587 TGTGTGTTGTAACAAACTCTCTCTC 59.189 40.000 16.56 0.00 45.37 3.20
5857 6166 5.234543 GTGTGTTGTAACAAACTCTCTCTCC 59.765 44.000 10.14 0.00 42.56 3.71
5858 6167 5.128827 TGTGTTGTAACAAACTCTCTCTCCT 59.871 40.000 0.00 0.00 41.21 3.69
5859 6168 5.692654 GTGTTGTAACAAACTCTCTCTCCTC 59.307 44.000 0.00 0.00 41.21 3.71
5860 6169 5.221461 TGTTGTAACAAACTCTCTCTCCTCC 60.221 44.000 0.00 0.00 35.67 4.30
5861 6170 4.742012 TGTAACAAACTCTCTCTCCTCCT 58.258 43.478 0.00 0.00 0.00 3.69
5862 6171 4.767928 TGTAACAAACTCTCTCTCCTCCTC 59.232 45.833 0.00 0.00 0.00 3.71
5863 6172 3.534357 ACAAACTCTCTCTCCTCCTCA 57.466 47.619 0.00 0.00 0.00 3.86
5864 6173 4.059773 ACAAACTCTCTCTCCTCCTCAT 57.940 45.455 0.00 0.00 0.00 2.90
5865 6174 4.424842 ACAAACTCTCTCTCCTCCTCATT 58.575 43.478 0.00 0.00 0.00 2.57
5866 6175 4.843516 ACAAACTCTCTCTCCTCCTCATTT 59.156 41.667 0.00 0.00 0.00 2.32
5867 6176 6.019748 ACAAACTCTCTCTCCTCCTCATTTA 58.980 40.000 0.00 0.00 0.00 1.40
5868 6177 6.498651 ACAAACTCTCTCTCCTCCTCATTTAA 59.501 38.462 0.00 0.00 0.00 1.52
5869 6178 7.181845 ACAAACTCTCTCTCCTCCTCATTTAAT 59.818 37.037 0.00 0.00 0.00 1.40
5870 6179 8.700051 CAAACTCTCTCTCCTCCTCATTTAATA 58.300 37.037 0.00 0.00 0.00 0.98
5871 6180 9.445973 AAACTCTCTCTCCTCCTCATTTAATAT 57.554 33.333 0.00 0.00 0.00 1.28
5898 6207 4.934075 GCAAATCTTTTGCCTCCATTTC 57.066 40.909 12.74 0.00 39.38 2.17
5899 6208 4.317488 GCAAATCTTTTGCCTCCATTTCA 58.683 39.130 12.74 0.00 39.38 2.69
5900 6209 4.756135 GCAAATCTTTTGCCTCCATTTCAA 59.244 37.500 12.74 0.00 39.38 2.69
5901 6210 5.239087 GCAAATCTTTTGCCTCCATTTCAAA 59.761 36.000 12.74 0.00 39.38 2.69
5902 6211 6.238703 GCAAATCTTTTGCCTCCATTTCAAAA 60.239 34.615 12.74 0.00 39.38 2.44
5903 6212 7.681543 GCAAATCTTTTGCCTCCATTTCAAAAA 60.682 33.333 12.74 0.00 38.65 1.94
5904 6213 8.354426 CAAATCTTTTGCCTCCATTTCAAAAAT 58.646 29.630 0.00 0.00 38.65 1.82
5905 6214 9.571816 AAATCTTTTGCCTCCATTTCAAAAATA 57.428 25.926 0.00 0.00 38.65 1.40
5906 6215 9.571816 AATCTTTTGCCTCCATTTCAAAAATAA 57.428 25.926 0.00 0.00 38.65 1.40
5907 6216 8.970859 TCTTTTGCCTCCATTTCAAAAATAAA 57.029 26.923 0.00 0.00 38.65 1.40
5908 6217 9.571816 TCTTTTGCCTCCATTTCAAAAATAAAT 57.428 25.926 0.00 0.00 38.65 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.762460 GAAGAGGGATGAGGCGGGA 60.762 63.158 0.00 0.00 0.00 5.14
46 47 3.151022 GGGGACAGGAGGCTCGAG 61.151 72.222 8.45 8.45 0.00 4.04
103 104 1.448013 GCGACCAGGACAAGTAGCC 60.448 63.158 0.00 0.00 0.00 3.93
188 189 1.701704 GTTGTTTATCCGGTCGTCGT 58.298 50.000 0.00 0.00 37.11 4.34
306 307 4.135153 CTCGTCACCAGGGCCTCG 62.135 72.222 0.95 3.66 0.00 4.63
307 308 4.459089 GCTCGTCACCAGGGCCTC 62.459 72.222 0.95 0.00 0.00 4.70
309 310 4.767255 CAGCTCGTCACCAGGGCC 62.767 72.222 0.00 0.00 0.00 5.80
310 311 4.767255 CCAGCTCGTCACCAGGGC 62.767 72.222 0.00 0.00 0.00 5.19
311 312 4.087892 CCCAGCTCGTCACCAGGG 62.088 72.222 0.00 0.00 0.00 4.45
312 313 2.997315 TCCCAGCTCGTCACCAGG 60.997 66.667 0.00 0.00 0.00 4.45
313 314 2.575993 CTCCCAGCTCGTCACCAG 59.424 66.667 0.00 0.00 0.00 4.00
314 315 2.997315 CCTCCCAGCTCGTCACCA 60.997 66.667 0.00 0.00 0.00 4.17
315 316 2.680352 TCCTCCCAGCTCGTCACC 60.680 66.667 0.00 0.00 0.00 4.02
316 317 2.716017 CCTCCTCCCAGCTCGTCAC 61.716 68.421 0.00 0.00 0.00 3.67
317 318 2.363018 CCTCCTCCCAGCTCGTCA 60.363 66.667 0.00 0.00 0.00 4.35
318 319 3.151022 CCCTCCTCCCAGCTCGTC 61.151 72.222 0.00 0.00 0.00 4.20
319 320 3.670629 CTCCCTCCTCCCAGCTCGT 62.671 68.421 0.00 0.00 0.00 4.18
320 321 2.837291 CTCCCTCCTCCCAGCTCG 60.837 72.222 0.00 0.00 0.00 5.03
321 322 2.445654 CCTCCCTCCTCCCAGCTC 60.446 72.222 0.00 0.00 0.00 4.09
322 323 4.101077 CCCTCCCTCCTCCCAGCT 62.101 72.222 0.00 0.00 0.00 4.24
327 328 4.423209 ACTGCCCCTCCCTCCTCC 62.423 72.222 0.00 0.00 0.00 4.30
328 329 3.086600 CACTGCCCCTCCCTCCTC 61.087 72.222 0.00 0.00 0.00 3.71
329 330 4.748798 CCACTGCCCCTCCCTCCT 62.749 72.222 0.00 0.00 0.00 3.69
330 331 4.741239 TCCACTGCCCCTCCCTCC 62.741 72.222 0.00 0.00 0.00 4.30
331 332 2.367512 ATCCACTGCCCCTCCCTC 60.368 66.667 0.00 0.00 0.00 4.30
332 333 2.367512 GATCCACTGCCCCTCCCT 60.368 66.667 0.00 0.00 0.00 4.20
333 334 3.866582 CGATCCACTGCCCCTCCC 61.867 72.222 0.00 0.00 0.00 4.30
334 335 2.764128 TCGATCCACTGCCCCTCC 60.764 66.667 0.00 0.00 0.00 4.30
335 336 2.801631 CCTCGATCCACTGCCCCTC 61.802 68.421 0.00 0.00 0.00 4.30
336 337 2.765807 CCTCGATCCACTGCCCCT 60.766 66.667 0.00 0.00 0.00 4.79
337 338 3.866582 CCCTCGATCCACTGCCCC 61.867 72.222 0.00 0.00 0.00 5.80
338 339 3.866582 CCCCTCGATCCACTGCCC 61.867 72.222 0.00 0.00 0.00 5.36
339 340 1.700042 ATTCCCCTCGATCCACTGCC 61.700 60.000 0.00 0.00 0.00 4.85
418 419 2.814097 CGACACTTTCCCCAATCTGGTT 60.814 50.000 0.00 0.00 35.17 3.67
430 431 0.573521 TTCGCGTGAACGACACTTTC 59.426 50.000 7.45 0.00 46.24 2.62
448 449 4.090723 GGCTAGGTTGGCCGTTTT 57.909 55.556 0.00 0.00 40.19 2.43
461 463 0.739462 CGCCTCGTGTTCATTGGCTA 60.739 55.000 0.00 0.00 41.25 3.93
511 513 1.001815 CACATTTTTCACCTCGCGGTT 60.002 47.619 6.13 0.00 42.13 4.44
529 531 4.215613 GGATTTTCACCTCACTGTAACCAC 59.784 45.833 0.00 0.00 0.00 4.16
539 541 1.243902 GCCGTTGGATTTTCACCTCA 58.756 50.000 0.00 0.00 0.00 3.86
548 550 3.642503 TGTCCCGGCCGTTGGATT 61.643 61.111 26.12 0.00 32.20 3.01
598 600 1.673168 GAAGCTCCCTCGATTTGCAT 58.327 50.000 0.00 0.00 0.00 3.96
608 610 2.057408 CGCTCTCAGGAAGCTCCCT 61.057 63.158 0.00 0.00 37.19 4.20
615 617 1.188219 AGCCAACTCGCTCTCAGGAA 61.188 55.000 0.00 0.00 32.06 3.36
621 623 1.671901 GAGGCTAGCCAACTCGCTCT 61.672 60.000 34.70 11.50 40.39 4.09
671 673 2.882132 GTGGTAAATGGTGGGCGC 59.118 61.111 0.00 0.00 0.00 6.53
678 680 0.676466 TGCTGCCTCGTGGTAAATGG 60.676 55.000 5.26 0.00 35.27 3.16
685 687 0.729116 CTTATTGTGCTGCCTCGTGG 59.271 55.000 0.00 0.00 0.00 4.94
687 689 2.472695 TTCTTATTGTGCTGCCTCGT 57.527 45.000 0.00 0.00 0.00 4.18
739 741 6.292596 CCACTCGCTGATTCTTAAGCTAATTC 60.293 42.308 0.00 0.00 37.27 2.17
740 742 5.525378 CCACTCGCTGATTCTTAAGCTAATT 59.475 40.000 0.00 0.00 37.27 1.40
742 744 4.433615 CCACTCGCTGATTCTTAAGCTAA 58.566 43.478 0.00 0.00 37.27 3.09
744 746 2.898705 CCACTCGCTGATTCTTAAGCT 58.101 47.619 0.00 0.00 37.27 3.74
747 754 1.555075 AGGCCACTCGCTGATTCTTAA 59.445 47.619 5.01 0.00 37.74 1.85
759 766 4.081087 TCTCCAATGTAAAGTAGGCCACTC 60.081 45.833 5.01 0.00 36.04 3.51
783 790 1.747206 CGTTGGGGAAGATGGGTCATC 60.747 57.143 0.00 0.00 40.80 2.92
784 791 0.255890 CGTTGGGGAAGATGGGTCAT 59.744 55.000 0.00 0.00 0.00 3.06
793 800 1.971695 GGCAACTCCGTTGGGGAAG 60.972 63.158 8.60 0.00 46.61 3.46
881 888 2.039216 TGTGTGTTTATCGGGGATGTGT 59.961 45.455 0.00 0.00 0.00 3.72
907 915 1.566018 GAAGTACGGCAGCACACACC 61.566 60.000 0.00 0.00 0.00 4.16
1397 1405 0.109412 CGGTAAGGAAAGAGCGACGT 60.109 55.000 0.00 0.00 38.81 4.34
1468 1476 6.920569 ATCGTGTAAGATCCAAATGGTAAC 57.079 37.500 0.00 0.00 36.34 2.50
1504 1512 3.472652 ACCAAGCGTAATTCACAACTCA 58.527 40.909 0.00 0.00 0.00 3.41
1604 1612 2.810852 GTTTCTTCTGCTTCAGGACCTG 59.189 50.000 15.99 15.99 31.51 4.00
1723 1731 1.985159 ACATAAGCCCCACAGTTCAGA 59.015 47.619 0.00 0.00 0.00 3.27
1759 1767 1.926511 GCCCAGAGCCAATCAACACG 61.927 60.000 0.00 0.00 34.35 4.49
1905 1913 3.406595 ATCAAGCCTGGCCGCCTAC 62.407 63.158 16.57 0.00 0.00 3.18
2035 2043 0.413832 TCCTTGCTGTAGGAGGGAGT 59.586 55.000 0.06 0.00 39.40 3.85
2070 2078 5.773176 TCATACACAGAGACAGTTCTACCAA 59.227 40.000 0.00 0.00 29.47 3.67
2681 2689 3.054139 TCAAATAAGCCATGAGAGCCAGT 60.054 43.478 0.00 0.00 0.00 4.00
2752 2760 2.430332 AGAATCAGGAGAAGCCTCTTCG 59.570 50.000 1.43 0.00 46.97 3.79
3051 3059 0.326264 AAAAGCATCGGAGGCAGTCT 59.674 50.000 17.58 0.00 0.00 3.24
3068 3076 4.143543 TCAATTGTGAGCCTCATGTCAAA 58.856 39.130 5.13 0.00 0.00 2.69
3091 3099 6.071560 TGAGAGCTACGTCCTTAATTCTTTCA 60.072 38.462 0.00 0.00 0.00 2.69
3736 3746 4.997565 TGCAAAAAGAAAGTCACCTTCTG 58.002 39.130 0.00 0.00 0.00 3.02
3741 3751 4.385358 TCCTTGCAAAAAGAAAGTCACC 57.615 40.909 0.00 0.00 30.07 4.02
3873 3883 4.468095 ACGAATTCACCTTTCAAACTCG 57.532 40.909 6.22 0.00 0.00 4.18
4006 4017 8.661352 AGGTTAAACTAGCTTACAAAAACGTA 57.339 30.769 0.00 0.00 0.00 3.57
4083 4094 4.340381 AGCAAAATATGACATCTTCCTGCC 59.660 41.667 12.93 2.30 0.00 4.85
4427 4439 6.301486 ACTATGATGATAGCAAAGGCATGAA 58.699 36.000 0.00 0.00 44.61 2.57
4581 4602 1.003839 GCACCAGAACACCGATGGA 60.004 57.895 0.00 0.00 37.54 3.41
4584 4605 1.003355 CCTGCACCAGAACACCGAT 60.003 57.895 0.00 0.00 32.44 4.18
4586 4607 1.227823 TTCCTGCACCAGAACACCG 60.228 57.895 0.00 0.00 32.44 4.94
4706 4727 1.027357 GATGAATGCAGGCGAACCAT 58.973 50.000 0.00 0.00 39.06 3.55
4726 4747 0.099436 CAGCGAAATAACCCAGCAGC 59.901 55.000 0.00 0.00 0.00 5.25
4787 4808 2.010145 TACAGCCTTGCTCACGATTC 57.990 50.000 0.00 0.00 36.40 2.52
4969 4990 8.480501 ACTCATCCAATTATTTGCATTAGCTTT 58.519 29.630 0.00 0.00 42.74 3.51
5054 5075 3.904136 ACCTCGCAAAGTTTTCAGATG 57.096 42.857 0.00 0.00 0.00 2.90
5094 5115 2.223923 CCGCTTCATCAACCCAAACAAA 60.224 45.455 0.00 0.00 0.00 2.83
5203 5224 8.508062 TGCTCTAATTGTCTAAAATTTTACGCA 58.492 29.630 6.54 6.16 32.16 5.24
5207 5228 9.716507 GCGATGCTCTAATTGTCTAAAATTTTA 57.283 29.630 10.16 10.16 32.16 1.52
5327 5351 4.261578 AGTTGTGCAAATGGAGAATTGG 57.738 40.909 0.00 0.00 0.00 3.16
5488 5773 2.887568 ATAGTGTCAGCTGCGCGC 60.888 61.111 27.26 27.26 39.57 6.86
5538 5847 2.223479 ACGTGTCCAAAATGACTGCAAC 60.223 45.455 0.00 0.00 36.21 4.17
5539 5848 2.020720 ACGTGTCCAAAATGACTGCAA 58.979 42.857 0.00 0.00 36.21 4.08
5540 5849 1.601903 GACGTGTCCAAAATGACTGCA 59.398 47.619 0.00 0.00 36.21 4.41
5541 5850 2.316119 GACGTGTCCAAAATGACTGC 57.684 50.000 0.00 0.00 36.21 4.40
5553 5862 2.325082 GGTGCCATGTGGACGTGTC 61.325 63.158 2.55 0.00 37.39 3.67
5554 5863 2.281484 GGTGCCATGTGGACGTGT 60.281 61.111 2.55 0.00 37.39 4.49
5555 5864 2.032528 AGGTGCCATGTGGACGTG 59.967 61.111 2.55 0.00 37.39 4.49
5556 5865 2.032528 CAGGTGCCATGTGGACGT 59.967 61.111 2.55 0.00 37.39 4.34
5557 5866 1.172180 AAACAGGTGCCATGTGGACG 61.172 55.000 2.55 0.00 37.39 4.79
5558 5867 0.314935 CAAACAGGTGCCATGTGGAC 59.685 55.000 2.55 0.00 37.39 4.02
5559 5868 0.184692 TCAAACAGGTGCCATGTGGA 59.815 50.000 2.55 0.00 37.39 4.02
5560 5869 0.314935 GTCAAACAGGTGCCATGTGG 59.685 55.000 0.00 0.00 38.53 4.17
5561 5870 1.267806 GAGTCAAACAGGTGCCATGTG 59.732 52.381 0.00 0.00 0.00 3.21
5562 5871 1.143684 AGAGTCAAACAGGTGCCATGT 59.856 47.619 0.00 0.00 0.00 3.21
5563 5872 1.538512 CAGAGTCAAACAGGTGCCATG 59.461 52.381 0.00 0.00 0.00 3.66
5564 5873 1.143684 ACAGAGTCAAACAGGTGCCAT 59.856 47.619 0.00 0.00 0.00 4.40
5565 5874 0.546122 ACAGAGTCAAACAGGTGCCA 59.454 50.000 0.00 0.00 0.00 4.92
5566 5875 1.604278 GAACAGAGTCAAACAGGTGCC 59.396 52.381 0.00 0.00 0.00 5.01
5567 5876 2.288666 TGAACAGAGTCAAACAGGTGC 58.711 47.619 0.00 0.00 0.00 5.01
5568 5877 3.304257 GCATGAACAGAGTCAAACAGGTG 60.304 47.826 0.00 0.00 0.00 4.00
5569 5878 2.880890 GCATGAACAGAGTCAAACAGGT 59.119 45.455 0.00 0.00 0.00 4.00
5570 5879 2.227388 GGCATGAACAGAGTCAAACAGG 59.773 50.000 0.00 0.00 0.00 4.00
5571 5880 3.058432 CAGGCATGAACAGAGTCAAACAG 60.058 47.826 0.00 0.00 0.00 3.16
5572 5881 2.880268 CAGGCATGAACAGAGTCAAACA 59.120 45.455 0.00 0.00 0.00 2.83
5573 5882 2.227388 CCAGGCATGAACAGAGTCAAAC 59.773 50.000 0.00 0.00 0.00 2.93
5574 5883 2.158623 ACCAGGCATGAACAGAGTCAAA 60.159 45.455 0.00 0.00 0.00 2.69
5575 5884 1.421268 ACCAGGCATGAACAGAGTCAA 59.579 47.619 0.00 0.00 0.00 3.18
5576 5885 1.059098 ACCAGGCATGAACAGAGTCA 58.941 50.000 0.00 0.00 0.00 3.41
5577 5886 1.446907 CACCAGGCATGAACAGAGTC 58.553 55.000 0.00 0.00 0.00 3.36
5578 5887 0.037303 CCACCAGGCATGAACAGAGT 59.963 55.000 0.00 0.00 0.00 3.24
5579 5888 0.679002 CCCACCAGGCATGAACAGAG 60.679 60.000 0.00 0.00 0.00 3.35
5580 5889 1.379916 CCCACCAGGCATGAACAGA 59.620 57.895 0.00 0.00 0.00 3.41
5581 5890 4.007457 CCCACCAGGCATGAACAG 57.993 61.111 0.00 0.00 0.00 3.16
5590 5899 4.415150 ATGTGCTCGCCCACCAGG 62.415 66.667 3.39 0.00 34.85 4.45
5591 5900 3.129502 CATGTGCTCGCCCACCAG 61.130 66.667 3.39 0.00 34.85 4.00
5594 5903 4.107051 GTGCATGTGCTCGCCCAC 62.107 66.667 6.55 0.00 42.66 4.61
5597 5906 4.107051 GTGGTGCATGTGCTCGCC 62.107 66.667 6.55 6.69 42.66 5.54
5598 5907 3.318539 CTGTGGTGCATGTGCTCGC 62.319 63.158 6.55 6.13 42.66 5.03
5599 5908 2.683859 CCTGTGGTGCATGTGCTCG 61.684 63.158 6.55 0.00 42.66 5.03
5600 5909 2.986306 GCCTGTGGTGCATGTGCTC 61.986 63.158 6.55 2.50 42.66 4.26
5601 5910 2.987547 GCCTGTGGTGCATGTGCT 60.988 61.111 6.55 0.00 42.66 4.40
5602 5911 3.296836 TGCCTGTGGTGCATGTGC 61.297 61.111 0.00 0.00 42.50 4.57
5603 5912 2.646719 GTGCCTGTGGTGCATGTG 59.353 61.111 0.00 0.00 41.46 3.21
5604 5913 2.598394 GGTGCCTGTGGTGCATGT 60.598 61.111 0.00 0.00 41.46 3.21
5605 5914 1.940883 GATGGTGCCTGTGGTGCATG 61.941 60.000 0.00 0.00 41.46 4.06
5606 5915 1.679977 GATGGTGCCTGTGGTGCAT 60.680 57.895 0.00 0.00 41.46 3.96
5607 5916 2.282391 GATGGTGCCTGTGGTGCA 60.282 61.111 0.00 0.00 36.12 4.57
5608 5917 3.434319 CGATGGTGCCTGTGGTGC 61.434 66.667 0.00 0.00 0.00 5.01
5609 5918 2.034879 GTCGATGGTGCCTGTGGTG 61.035 63.158 0.00 0.00 0.00 4.17
5610 5919 2.347490 GTCGATGGTGCCTGTGGT 59.653 61.111 0.00 0.00 0.00 4.16
5611 5920 1.742880 CTGTCGATGGTGCCTGTGG 60.743 63.158 0.00 0.00 0.00 4.17
5612 5921 0.320683 TTCTGTCGATGGTGCCTGTG 60.321 55.000 0.00 0.00 0.00 3.66
5613 5922 0.396435 TTTCTGTCGATGGTGCCTGT 59.604 50.000 0.00 0.00 0.00 4.00
5614 5923 1.466167 CTTTTCTGTCGATGGTGCCTG 59.534 52.381 0.00 0.00 0.00 4.85
5615 5924 1.813513 CTTTTCTGTCGATGGTGCCT 58.186 50.000 0.00 0.00 0.00 4.75
5616 5925 0.169009 GCTTTTCTGTCGATGGTGCC 59.831 55.000 0.00 0.00 0.00 5.01
5617 5926 0.874390 TGCTTTTCTGTCGATGGTGC 59.126 50.000 0.00 0.00 0.00 5.01
5618 5927 3.558505 CTTTGCTTTTCTGTCGATGGTG 58.441 45.455 0.00 0.00 0.00 4.17
5619 5928 2.554032 CCTTTGCTTTTCTGTCGATGGT 59.446 45.455 0.00 0.00 0.00 3.55
5620 5929 2.669391 GCCTTTGCTTTTCTGTCGATGG 60.669 50.000 0.00 0.00 33.53 3.51
5621 5930 2.030893 TGCCTTTGCTTTTCTGTCGATG 60.031 45.455 0.00 0.00 38.71 3.84
5622 5931 2.229792 TGCCTTTGCTTTTCTGTCGAT 58.770 42.857 0.00 0.00 38.71 3.59
5623 5932 1.674359 TGCCTTTGCTTTTCTGTCGA 58.326 45.000 0.00 0.00 38.71 4.20
5624 5933 2.589014 GATGCCTTTGCTTTTCTGTCG 58.411 47.619 0.00 0.00 38.71 4.35
5625 5934 2.226437 TCGATGCCTTTGCTTTTCTGTC 59.774 45.455 0.00 0.00 38.71 3.51
5626 5935 2.229792 TCGATGCCTTTGCTTTTCTGT 58.770 42.857 0.00 0.00 38.71 3.41
5627 5936 2.995466 TCGATGCCTTTGCTTTTCTG 57.005 45.000 0.00 0.00 38.71 3.02
5628 5937 4.142381 GGTAATCGATGCCTTTGCTTTTCT 60.142 41.667 0.00 0.00 38.71 2.52
5629 5938 4.105486 GGTAATCGATGCCTTTGCTTTTC 58.895 43.478 0.00 0.00 38.71 2.29
5630 5939 3.509575 TGGTAATCGATGCCTTTGCTTTT 59.490 39.130 16.97 0.00 38.71 2.27
5631 5940 3.088532 TGGTAATCGATGCCTTTGCTTT 58.911 40.909 16.97 0.00 38.71 3.51
5632 5941 2.722094 TGGTAATCGATGCCTTTGCTT 58.278 42.857 16.97 0.00 38.71 3.91
5633 5942 2.418368 TGGTAATCGATGCCTTTGCT 57.582 45.000 16.97 0.00 38.71 3.91
5634 5943 2.859806 GCATGGTAATCGATGCCTTTGC 60.860 50.000 20.43 20.43 45.56 3.68
5635 5944 3.004024 GCATGGTAATCGATGCCTTTG 57.996 47.619 16.97 14.96 45.56 2.77
5641 5950 4.620982 TGACACTAGCATGGTAATCGATG 58.379 43.478 6.04 2.86 33.83 3.84
5642 5951 4.937201 TGACACTAGCATGGTAATCGAT 57.063 40.909 6.04 0.00 0.00 3.59
5643 5952 4.620982 CATGACACTAGCATGGTAATCGA 58.379 43.478 6.04 0.00 39.48 3.59
5644 5953 4.979564 CATGACACTAGCATGGTAATCG 57.020 45.455 6.04 0.00 39.48 3.34
5651 5960 5.278315 CCAATTGATCCATGACACTAGCATG 60.278 44.000 7.12 0.00 42.07 4.06
5652 5961 4.825634 CCAATTGATCCATGACACTAGCAT 59.174 41.667 7.12 0.00 0.00 3.79
5653 5962 4.080413 TCCAATTGATCCATGACACTAGCA 60.080 41.667 7.12 0.00 0.00 3.49
5654 5963 4.454678 TCCAATTGATCCATGACACTAGC 58.545 43.478 7.12 0.00 0.00 3.42
5655 5964 6.769341 TCATTCCAATTGATCCATGACACTAG 59.231 38.462 7.12 0.00 0.00 2.57
5656 5965 6.661777 TCATTCCAATTGATCCATGACACTA 58.338 36.000 7.12 0.00 0.00 2.74
5657 5966 5.512298 TCATTCCAATTGATCCATGACACT 58.488 37.500 7.12 0.00 0.00 3.55
5658 5967 5.735354 GCTCATTCCAATTGATCCATGACAC 60.735 44.000 7.12 0.00 0.00 3.67
5659 5968 4.340097 GCTCATTCCAATTGATCCATGACA 59.660 41.667 7.12 0.00 0.00 3.58
5660 5969 4.340097 TGCTCATTCCAATTGATCCATGAC 59.660 41.667 7.12 4.97 0.00 3.06
5661 5970 4.340097 GTGCTCATTCCAATTGATCCATGA 59.660 41.667 7.12 7.65 0.00 3.07
5662 5971 4.098807 TGTGCTCATTCCAATTGATCCATG 59.901 41.667 7.12 3.68 0.00 3.66
5663 5972 4.283337 TGTGCTCATTCCAATTGATCCAT 58.717 39.130 7.12 0.00 0.00 3.41
5664 5973 3.699413 TGTGCTCATTCCAATTGATCCA 58.301 40.909 7.12 0.00 0.00 3.41
5665 5974 4.724074 TTGTGCTCATTCCAATTGATCC 57.276 40.909 7.12 0.00 0.00 3.36
5666 5975 4.974275 CGATTGTGCTCATTCCAATTGATC 59.026 41.667 7.12 0.00 33.61 2.92
5667 5976 4.735578 GCGATTGTGCTCATTCCAATTGAT 60.736 41.667 7.12 0.00 33.61 2.57
5668 5977 3.427909 GCGATTGTGCTCATTCCAATTGA 60.428 43.478 7.12 0.00 33.61 2.57
5669 5978 2.855963 GCGATTGTGCTCATTCCAATTG 59.144 45.455 0.00 0.00 34.49 2.32
5670 5979 2.492881 TGCGATTGTGCTCATTCCAATT 59.507 40.909 5.38 0.00 35.36 2.32
5671 5980 2.093890 TGCGATTGTGCTCATTCCAAT 58.906 42.857 5.38 0.00 35.36 3.16
5672 5981 1.532523 TGCGATTGTGCTCATTCCAA 58.467 45.000 5.38 0.00 35.36 3.53
5673 5982 1.469703 CTTGCGATTGTGCTCATTCCA 59.530 47.619 5.38 2.81 35.36 3.53
5674 5983 1.739466 TCTTGCGATTGTGCTCATTCC 59.261 47.619 5.38 0.73 35.36 3.01
5675 5984 2.417933 ACTCTTGCGATTGTGCTCATTC 59.582 45.455 0.00 1.49 35.36 2.67
5676 5985 2.161012 CACTCTTGCGATTGTGCTCATT 59.839 45.455 0.00 0.00 35.36 2.57
5677 5986 1.736126 CACTCTTGCGATTGTGCTCAT 59.264 47.619 0.00 0.00 35.36 2.90
5678 5987 1.150827 CACTCTTGCGATTGTGCTCA 58.849 50.000 0.00 0.00 35.36 4.26
5679 5988 1.151668 ACACTCTTGCGATTGTGCTC 58.848 50.000 6.43 0.00 32.53 4.26
5680 5989 1.597742 AACACTCTTGCGATTGTGCT 58.402 45.000 6.43 0.00 33.85 4.40
5681 5990 2.405892 AAACACTCTTGCGATTGTGC 57.594 45.000 6.43 0.00 33.85 4.57
5682 5991 3.667960 GCCTAAACACTCTTGCGATTGTG 60.668 47.826 5.28 5.28 33.85 3.33
5683 5992 2.484264 GCCTAAACACTCTTGCGATTGT 59.516 45.455 0.00 0.00 34.89 2.71
5684 5993 2.483877 TGCCTAAACACTCTTGCGATTG 59.516 45.455 0.00 0.00 0.00 2.67
5685 5994 2.778299 TGCCTAAACACTCTTGCGATT 58.222 42.857 0.00 0.00 0.00 3.34
5686 5995 2.472695 TGCCTAAACACTCTTGCGAT 57.527 45.000 0.00 0.00 0.00 4.58
5687 5996 2.248280 TTGCCTAAACACTCTTGCGA 57.752 45.000 0.00 0.00 0.00 5.10
5688 5997 3.347958 TTTTGCCTAAACACTCTTGCG 57.652 42.857 0.00 0.00 0.00 4.85
5706 6015 0.820871 TTTGCGGAGGTGCACTTTTT 59.179 45.000 17.98 0.00 46.25 1.94
5707 6016 1.000274 GATTTGCGGAGGTGCACTTTT 60.000 47.619 17.98 2.54 46.25 2.27
5708 6017 0.598065 GATTTGCGGAGGTGCACTTT 59.402 50.000 17.98 5.37 46.25 2.66
5709 6018 0.250901 AGATTTGCGGAGGTGCACTT 60.251 50.000 17.98 9.59 46.25 3.16
5710 6019 0.250901 AAGATTTGCGGAGGTGCACT 60.251 50.000 17.98 2.27 46.25 4.40
5711 6020 0.109597 CAAGATTTGCGGAGGTGCAC 60.110 55.000 8.80 8.80 46.25 4.57
5712 6021 2.256391 CAAGATTTGCGGAGGTGCA 58.744 52.632 0.00 0.00 44.61 4.57
5722 6031 4.993905 TCAATGATGCTGAGCAAGATTTG 58.006 39.130 12.69 13.03 43.62 2.32
5723 6032 5.417894 TCTTCAATGATGCTGAGCAAGATTT 59.582 36.000 12.69 0.00 43.62 2.17
5724 6033 4.948004 TCTTCAATGATGCTGAGCAAGATT 59.052 37.500 12.69 9.83 43.62 2.40
5725 6034 4.335874 GTCTTCAATGATGCTGAGCAAGAT 59.664 41.667 12.69 3.16 43.62 2.40
5726 6035 3.688185 GTCTTCAATGATGCTGAGCAAGA 59.312 43.478 12.69 4.76 43.62 3.02
5727 6036 3.485381 CGTCTTCAATGATGCTGAGCAAG 60.485 47.826 12.69 1.92 43.62 4.01
5728 6037 2.417586 CGTCTTCAATGATGCTGAGCAA 59.582 45.455 12.69 0.00 43.62 3.91
5729 6038 2.004733 CGTCTTCAATGATGCTGAGCA 58.995 47.619 10.59 10.59 44.86 4.26
5730 6039 2.274437 TCGTCTTCAATGATGCTGAGC 58.726 47.619 0.00 0.00 0.00 4.26
5731 6040 2.864946 CCTCGTCTTCAATGATGCTGAG 59.135 50.000 9.08 9.08 0.00 3.35
5732 6041 2.897436 CCTCGTCTTCAATGATGCTGA 58.103 47.619 0.00 0.00 0.00 4.26
5733 6042 1.329906 GCCTCGTCTTCAATGATGCTG 59.670 52.381 0.00 0.00 33.24 4.41
5734 6043 1.065926 TGCCTCGTCTTCAATGATGCT 60.066 47.619 0.00 0.00 36.01 3.79
5735 6044 1.372582 TGCCTCGTCTTCAATGATGC 58.627 50.000 0.00 0.00 35.69 3.91
5736 6045 3.426695 GGTTTGCCTCGTCTTCAATGATG 60.427 47.826 0.00 0.00 0.00 3.07
5737 6046 2.749621 GGTTTGCCTCGTCTTCAATGAT 59.250 45.455 0.00 0.00 0.00 2.45
5738 6047 2.151202 GGTTTGCCTCGTCTTCAATGA 58.849 47.619 0.00 0.00 0.00 2.57
5739 6048 2.154462 AGGTTTGCCTCGTCTTCAATG 58.846 47.619 0.00 0.00 42.67 2.82
5740 6049 2.568623 AGGTTTGCCTCGTCTTCAAT 57.431 45.000 0.00 0.00 42.67 2.57
5741 6050 2.341846 AAGGTTTGCCTCGTCTTCAA 57.658 45.000 0.00 0.00 46.33 2.69
5742 6051 1.946768 CAAAGGTTTGCCTCGTCTTCA 59.053 47.619 0.00 0.00 46.33 3.02
5743 6052 1.266989 CCAAAGGTTTGCCTCGTCTTC 59.733 52.381 0.00 0.00 46.33 2.87
5744 6053 1.133915 TCCAAAGGTTTGCCTCGTCTT 60.134 47.619 0.00 0.00 46.33 3.01
5745 6054 0.472471 TCCAAAGGTTTGCCTCGTCT 59.528 50.000 0.00 0.00 46.33 4.18
5746 6055 1.534729 ATCCAAAGGTTTGCCTCGTC 58.465 50.000 0.00 0.00 46.33 4.20
5747 6056 1.995376 AATCCAAAGGTTTGCCTCGT 58.005 45.000 0.00 0.00 46.33 4.18
5748 6057 4.485163 CTTTAATCCAAAGGTTTGCCTCG 58.515 43.478 0.00 0.00 46.33 4.63
5749 6058 4.245660 GCTTTAATCCAAAGGTTTGCCTC 58.754 43.478 0.00 0.00 46.33 4.70
5757 6066 1.469767 GCCGCAGCTTTAATCCAAAGG 60.470 52.381 0.00 0.00 43.38 3.11
5758 6067 1.202114 TGCCGCAGCTTTAATCCAAAG 59.798 47.619 0.00 0.00 45.55 2.77
5759 6068 1.252175 TGCCGCAGCTTTAATCCAAA 58.748 45.000 0.00 0.00 40.80 3.28
5760 6069 1.252175 TTGCCGCAGCTTTAATCCAA 58.748 45.000 0.00 0.00 40.80 3.53
5761 6070 1.202114 CTTTGCCGCAGCTTTAATCCA 59.798 47.619 0.00 0.00 40.80 3.41
5762 6071 1.472480 TCTTTGCCGCAGCTTTAATCC 59.528 47.619 0.00 0.00 40.80 3.01
5763 6072 2.919666 TCTTTGCCGCAGCTTTAATC 57.080 45.000 0.00 0.00 40.80 1.75
5764 6073 3.658757 TTTCTTTGCCGCAGCTTTAAT 57.341 38.095 0.00 0.00 40.80 1.40
5765 6074 3.658757 ATTTCTTTGCCGCAGCTTTAA 57.341 38.095 0.00 0.00 40.80 1.52
5766 6075 3.658757 AATTTCTTTGCCGCAGCTTTA 57.341 38.095 0.00 0.00 40.80 1.85
5767 6076 2.531522 AATTTCTTTGCCGCAGCTTT 57.468 40.000 0.00 0.00 40.80 3.51
5768 6077 2.094545 CCTAATTTCTTTGCCGCAGCTT 60.095 45.455 0.00 0.00 40.80 3.74
5769 6078 1.474077 CCTAATTTCTTTGCCGCAGCT 59.526 47.619 0.00 0.00 40.80 4.24
5770 6079 1.469767 CCCTAATTTCTTTGCCGCAGC 60.470 52.381 0.00 0.00 40.48 5.25
5771 6080 1.818674 ACCCTAATTTCTTTGCCGCAG 59.181 47.619 0.00 0.00 0.00 5.18
5772 6081 1.816224 GACCCTAATTTCTTTGCCGCA 59.184 47.619 0.00 0.00 0.00 5.69
5773 6082 2.092323 AGACCCTAATTTCTTTGCCGC 58.908 47.619 0.00 0.00 0.00 6.53
5774 6083 4.783764 AAAGACCCTAATTTCTTTGCCG 57.216 40.909 2.73 0.00 39.95 5.69
5794 6103 8.806634 GCATGACAATTATTCTCGCAATAAAAA 58.193 29.630 0.00 0.00 0.00 1.94
5795 6104 7.434897 GGCATGACAATTATTCTCGCAATAAAA 59.565 33.333 0.00 0.00 0.00 1.52
5796 6105 6.917477 GGCATGACAATTATTCTCGCAATAAA 59.083 34.615 0.00 0.00 0.00 1.40
5797 6106 6.437928 GGCATGACAATTATTCTCGCAATAA 58.562 36.000 0.00 2.88 0.00 1.40
5798 6107 5.334028 CGGCATGACAATTATTCTCGCAATA 60.334 40.000 0.00 0.00 0.00 1.90
5799 6108 4.555313 CGGCATGACAATTATTCTCGCAAT 60.555 41.667 0.00 0.00 0.00 3.56
5800 6109 3.242706 CGGCATGACAATTATTCTCGCAA 60.243 43.478 0.00 0.00 0.00 4.85
5801 6110 2.287644 CGGCATGACAATTATTCTCGCA 59.712 45.455 0.00 0.00 0.00 5.10
5802 6111 2.287915 ACGGCATGACAATTATTCTCGC 59.712 45.455 0.00 0.00 0.00 5.03
5803 6112 5.234329 AGTTACGGCATGACAATTATTCTCG 59.766 40.000 0.00 0.00 0.00 4.04
5804 6113 6.604735 AGTTACGGCATGACAATTATTCTC 57.395 37.500 0.00 0.00 0.00 2.87
5805 6114 6.183360 CCAAGTTACGGCATGACAATTATTCT 60.183 38.462 0.00 0.00 0.00 2.40
5806 6115 5.971202 CCAAGTTACGGCATGACAATTATTC 59.029 40.000 0.00 0.00 0.00 1.75
5807 6116 5.650266 TCCAAGTTACGGCATGACAATTATT 59.350 36.000 0.00 0.00 0.00 1.40
5808 6117 5.189928 TCCAAGTTACGGCATGACAATTAT 58.810 37.500 0.00 0.00 0.00 1.28
5809 6118 4.580868 TCCAAGTTACGGCATGACAATTA 58.419 39.130 0.00 0.00 0.00 1.40
5810 6119 3.417101 TCCAAGTTACGGCATGACAATT 58.583 40.909 0.00 0.00 0.00 2.32
5811 6120 3.066291 TCCAAGTTACGGCATGACAAT 57.934 42.857 0.00 0.00 0.00 2.71
5812 6121 2.552599 TCCAAGTTACGGCATGACAA 57.447 45.000 0.00 0.00 0.00 3.18
5813 6122 2.290008 ACATCCAAGTTACGGCATGACA 60.290 45.455 0.00 0.00 0.00 3.58
5814 6123 2.095853 CACATCCAAGTTACGGCATGAC 59.904 50.000 0.00 0.00 0.00 3.06
5815 6124 2.290008 ACACATCCAAGTTACGGCATGA 60.290 45.455 0.00 0.00 0.00 3.07
5816 6125 2.083774 ACACATCCAAGTTACGGCATG 58.916 47.619 0.00 0.00 0.00 4.06
5817 6126 2.083774 CACACATCCAAGTTACGGCAT 58.916 47.619 0.00 0.00 0.00 4.40
5818 6127 1.202710 ACACACATCCAAGTTACGGCA 60.203 47.619 0.00 0.00 0.00 5.69
5819 6128 1.519408 ACACACATCCAAGTTACGGC 58.481 50.000 0.00 0.00 0.00 5.68
5820 6129 2.875933 ACAACACACATCCAAGTTACGG 59.124 45.455 0.00 0.00 0.00 4.02
5821 6130 5.006844 TGTTACAACACACATCCAAGTTACG 59.993 40.000 0.00 0.00 33.17 3.18
5822 6131 6.366315 TGTTACAACACACATCCAAGTTAC 57.634 37.500 0.00 0.00 33.17 2.50
5823 6132 7.121463 AGTTTGTTACAACACACATCCAAGTTA 59.879 33.333 12.48 0.00 40.95 2.24
5824 6133 5.906113 TTGTTACAACACACATCCAAGTT 57.094 34.783 0.00 0.00 38.92 2.66
5825 6134 5.417580 AGTTTGTTACAACACACATCCAAGT 59.582 36.000 12.48 0.00 40.95 3.16
5826 6135 5.890334 AGTTTGTTACAACACACATCCAAG 58.110 37.500 12.48 0.00 40.95 3.61
5827 6136 5.650266 AGAGTTTGTTACAACACACATCCAA 59.350 36.000 12.48 0.00 40.95 3.53
5828 6137 5.189928 AGAGTTTGTTACAACACACATCCA 58.810 37.500 12.48 0.00 40.95 3.41
5829 6138 5.527582 AGAGAGTTTGTTACAACACACATCC 59.472 40.000 12.48 3.45 40.95 3.51
5830 6139 6.480320 AGAGAGAGTTTGTTACAACACACATC 59.520 38.462 12.48 9.91 40.95 3.06
5831 6140 6.349300 AGAGAGAGTTTGTTACAACACACAT 58.651 36.000 12.48 2.58 40.95 3.21
5832 6141 5.730550 AGAGAGAGTTTGTTACAACACACA 58.269 37.500 12.48 0.00 40.95 3.72
5833 6142 5.234543 GGAGAGAGAGTTTGTTACAACACAC 59.765 44.000 0.00 3.70 39.30 3.82
5834 6143 5.128827 AGGAGAGAGAGTTTGTTACAACACA 59.871 40.000 0.00 0.00 38.92 3.72
5835 6144 5.602628 AGGAGAGAGAGTTTGTTACAACAC 58.397 41.667 0.00 0.12 38.92 3.32
5836 6145 5.221461 GGAGGAGAGAGAGTTTGTTACAACA 60.221 44.000 0.00 0.00 37.08 3.33
5837 6146 5.011227 AGGAGGAGAGAGAGTTTGTTACAAC 59.989 44.000 0.00 0.00 0.00 3.32
5838 6147 5.148502 AGGAGGAGAGAGAGTTTGTTACAA 58.851 41.667 0.00 0.00 0.00 2.41
5839 6148 4.742012 AGGAGGAGAGAGAGTTTGTTACA 58.258 43.478 0.00 0.00 0.00 2.41
5840 6149 4.767928 TGAGGAGGAGAGAGAGTTTGTTAC 59.232 45.833 0.00 0.00 0.00 2.50
5841 6150 4.999310 TGAGGAGGAGAGAGAGTTTGTTA 58.001 43.478 0.00 0.00 0.00 2.41
5842 6151 3.850752 TGAGGAGGAGAGAGAGTTTGTT 58.149 45.455 0.00 0.00 0.00 2.83
5843 6152 3.534357 TGAGGAGGAGAGAGAGTTTGT 57.466 47.619 0.00 0.00 0.00 2.83
5844 6153 5.419239 AAATGAGGAGGAGAGAGAGTTTG 57.581 43.478 0.00 0.00 0.00 2.93
5845 6154 7.747809 ATTAAATGAGGAGGAGAGAGAGTTT 57.252 36.000 0.00 0.00 0.00 2.66
5877 6186 4.317488 TGAAATGGAGGCAAAAGATTTGC 58.683 39.130 17.18 17.18 44.22 3.68
5878 6187 6.864360 TTTGAAATGGAGGCAAAAGATTTG 57.136 33.333 0.00 0.00 0.00 2.32
5879 6188 7.878547 TTTTTGAAATGGAGGCAAAAGATTT 57.121 28.000 0.00 0.00 41.02 2.17
5880 6189 9.571816 TTATTTTTGAAATGGAGGCAAAAGATT 57.428 25.926 0.00 0.00 41.02 2.40
5881 6190 9.571816 TTTATTTTTGAAATGGAGGCAAAAGAT 57.428 25.926 0.00 0.00 41.02 2.40
5882 6191 8.970859 TTTATTTTTGAAATGGAGGCAAAAGA 57.029 26.923 0.00 0.00 41.02 2.52
5910 6219 9.590451 CCTATTCATAAATGACTGCAACATTTT 57.410 29.630 25.57 15.52 42.73 1.82
5911 6220 8.752187 ACCTATTCATAAATGACTGCAACATTT 58.248 29.630 24.53 24.53 45.67 2.32
5912 6221 8.297470 ACCTATTCATAAATGACTGCAACATT 57.703 30.769 11.43 11.43 39.25 2.71
5913 6222 7.886629 ACCTATTCATAAATGACTGCAACAT 57.113 32.000 0.00 0.00 36.36 2.71
5914 6223 8.978874 ATACCTATTCATAAATGACTGCAACA 57.021 30.769 0.00 0.00 36.36 3.33
5915 6224 8.223769 CGATACCTATTCATAAATGACTGCAAC 58.776 37.037 0.00 0.00 36.36 4.17
5945 6259 2.359107 CCGTGTGCCAGCTGTGAT 60.359 61.111 13.81 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.