Multiple sequence alignment - TraesCS3B01G222100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G222100 chr3B 100.000 3487 0 0 1 3487 279660177 279656691 0.000000e+00 6440
1 TraesCS3B01G222100 chr3B 96.918 2498 74 1 993 3487 245928372 245930869 0.000000e+00 4183
2 TraesCS3B01G222100 chr3B 96.637 2498 80 2 993 3487 52914750 52912254 0.000000e+00 4145
3 TraesCS3B01G222100 chr3B 93.462 260 14 3 344 602 312156345 312156088 1.960000e-102 383
4 TraesCS3B01G222100 chr3B 92.188 256 18 2 348 602 150865602 150865348 9.200000e-96 361
5 TraesCS3B01G222100 chr7D 95.610 2665 91 11 837 3487 388643492 388640840 0.000000e+00 4250
6 TraesCS3B01G222100 chr7D 95.567 2662 94 11 837 3487 414100385 414097737 0.000000e+00 4241
7 TraesCS3B01G222100 chr1A 96.841 2501 73 2 993 3487 208901468 208898968 0.000000e+00 4176
8 TraesCS3B01G222100 chr3D 96.463 2516 82 4 977 3487 105445196 105447709 0.000000e+00 4146
9 TraesCS3B01G222100 chr3D 97.472 356 4 2 1 355 196932185 196931834 1.380000e-168 603
10 TraesCS3B01G222100 chr2D 96.637 2498 81 1 993 3487 126138487 126140984 0.000000e+00 4145
11 TraesCS3B01G222100 chr5D 96.600 2500 79 2 994 3487 12216676 12219175 0.000000e+00 4141
12 TraesCS3B01G222100 chr5D 86.465 2645 291 28 890 3487 187945849 187948473 0.000000e+00 2839
13 TraesCS3B01G222100 chr2B 96.633 2495 80 2 993 3484 321697309 321699802 0.000000e+00 4139
14 TraesCS3B01G222100 chr2B 95.565 248 11 0 355 602 794603808 794604055 7.010000e-107 398
15 TraesCS3B01G222100 chr2B 94.758 248 12 1 356 602 321696426 321696673 5.460000e-103 385
16 TraesCS3B01G222100 chr3A 97.321 336 5 1 2 337 251327928 251327597 5.050000e-158 568
17 TraesCS3B01G222100 chr5B 95.019 261 10 3 344 602 24818972 24818713 1.170000e-109 407
18 TraesCS3B01G222100 chr5B 95.935 246 9 1 356 600 86244015 86243770 7.010000e-107 398
19 TraesCS3B01G222100 chr5B 94.366 71 4 0 821 891 24818530 24818460 3.680000e-20 110
20 TraesCS3B01G222100 chr5A 92.829 251 16 2 354 602 309037547 309037297 2.560000e-96 363
21 TraesCS3B01G222100 chr4B 92.913 254 11 3 356 602 396691928 396692181 2.560000e-96 363
22 TraesCS3B01G222100 chr4B 77.838 185 28 10 948 1119 278838791 278838975 6.160000e-18 102
23 TraesCS3B01G222100 chrUn 92.095 253 18 2 351 602 87959124 87958873 4.280000e-94 355


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G222100 chr3B 279656691 279660177 3486 True 6440.0 6440 100.0000 1 3487 1 chr3B.!!$R3 3486
1 TraesCS3B01G222100 chr3B 245928372 245930869 2497 False 4183.0 4183 96.9180 993 3487 1 chr3B.!!$F1 2494
2 TraesCS3B01G222100 chr3B 52912254 52914750 2496 True 4145.0 4145 96.6370 993 3487 1 chr3B.!!$R1 2494
3 TraesCS3B01G222100 chr7D 388640840 388643492 2652 True 4250.0 4250 95.6100 837 3487 1 chr7D.!!$R1 2650
4 TraesCS3B01G222100 chr7D 414097737 414100385 2648 True 4241.0 4241 95.5670 837 3487 1 chr7D.!!$R2 2650
5 TraesCS3B01G222100 chr1A 208898968 208901468 2500 True 4176.0 4176 96.8410 993 3487 1 chr1A.!!$R1 2494
6 TraesCS3B01G222100 chr3D 105445196 105447709 2513 False 4146.0 4146 96.4630 977 3487 1 chr3D.!!$F1 2510
7 TraesCS3B01G222100 chr2D 126138487 126140984 2497 False 4145.0 4145 96.6370 993 3487 1 chr2D.!!$F1 2494
8 TraesCS3B01G222100 chr5D 12216676 12219175 2499 False 4141.0 4141 96.6000 994 3487 1 chr5D.!!$F1 2493
9 TraesCS3B01G222100 chr5D 187945849 187948473 2624 False 2839.0 2839 86.4650 890 3487 1 chr5D.!!$F2 2597
10 TraesCS3B01G222100 chr2B 321696426 321699802 3376 False 2262.0 4139 95.6955 356 3484 2 chr2B.!!$F2 3128
11 TraesCS3B01G222100 chr5B 24818460 24818972 512 True 258.5 407 94.6925 344 891 2 chr5B.!!$R2 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
274 275 0.033920 GCCAAAGGCCCTGAAAAGTG 59.966 55.0 0.00 0.0 44.06 3.16 F
321 322 0.037232 AAGCGCTGGTAGAGTGGAAC 60.037 55.0 12.58 0.0 32.26 3.62 F
853 867 0.106894 CTGCCCCTTTATCTCCCGAC 59.893 60.0 0.00 0.0 0.00 4.79 F
1780 2195 0.169672 GACTCGCTTACGTGGTGCTA 59.830 55.0 0.00 0.0 41.18 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1553 1965 0.250209 CTGGCGCCAGATAGCAGAAT 60.250 55.000 46.72 0.0 46.30 2.40 R
1692 2104 1.522806 AAACAACTGAGCACGCCGA 60.523 52.632 0.00 0.0 0.00 5.54 R
2031 2449 1.865788 GCTCGGTCAAAGCAATGGCA 61.866 55.000 0.00 0.0 44.61 4.92 R
3105 3529 1.065102 GCAATCATCAATGCACGAGCT 59.935 47.619 6.36 0.0 42.12 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.778534 CATGTTCTGCAGTTCAGGAAAT 57.221 40.909 14.67 0.00 43.06 2.17
25 26 5.885230 CATGTTCTGCAGTTCAGGAAATA 57.115 39.130 14.67 0.00 43.06 1.40
26 27 6.258230 CATGTTCTGCAGTTCAGGAAATAA 57.742 37.500 14.67 0.00 43.06 1.40
27 28 6.680810 CATGTTCTGCAGTTCAGGAAATAAA 58.319 36.000 14.67 0.00 43.06 1.40
28 29 6.707440 TGTTCTGCAGTTCAGGAAATAAAA 57.293 33.333 14.67 0.00 43.06 1.52
29 30 7.106439 TGTTCTGCAGTTCAGGAAATAAAAA 57.894 32.000 14.67 0.00 43.06 1.94
30 31 7.202526 TGTTCTGCAGTTCAGGAAATAAAAAG 58.797 34.615 14.67 0.00 43.06 2.27
31 32 6.331369 TCTGCAGTTCAGGAAATAAAAAGG 57.669 37.500 14.67 0.00 43.06 3.11
32 33 6.068010 TCTGCAGTTCAGGAAATAAAAAGGA 58.932 36.000 14.67 0.00 43.06 3.36
33 34 6.549364 TCTGCAGTTCAGGAAATAAAAAGGAA 59.451 34.615 14.67 0.00 43.06 3.36
34 35 6.748132 TGCAGTTCAGGAAATAAAAAGGAAG 58.252 36.000 0.00 0.00 0.00 3.46
35 36 6.323739 TGCAGTTCAGGAAATAAAAAGGAAGT 59.676 34.615 0.00 0.00 0.00 3.01
36 37 6.642540 GCAGTTCAGGAAATAAAAAGGAAGTG 59.357 38.462 0.00 0.00 37.31 3.16
37 38 7.147976 CAGTTCAGGAAATAAAAAGGAAGTGG 58.852 38.462 0.00 0.00 33.05 4.00
38 39 7.014230 CAGTTCAGGAAATAAAAAGGAAGTGGA 59.986 37.037 0.00 0.00 33.05 4.02
39 40 7.730332 AGTTCAGGAAATAAAAAGGAAGTGGAT 59.270 33.333 0.00 0.00 0.00 3.41
40 41 9.020731 GTTCAGGAAATAAAAAGGAAGTGGATA 57.979 33.333 0.00 0.00 0.00 2.59
41 42 9.594936 TTCAGGAAATAAAAAGGAAGTGGATAA 57.405 29.630 0.00 0.00 0.00 1.75
42 43 9.768215 TCAGGAAATAAAAAGGAAGTGGATAAT 57.232 29.630 0.00 0.00 0.00 1.28
87 88 5.541098 AAAAATTCCGTACCGAGATTGAC 57.459 39.130 0.00 0.00 0.00 3.18
88 89 2.486951 ATTCCGTACCGAGATTGACG 57.513 50.000 0.00 0.00 35.12 4.35
89 90 1.452110 TTCCGTACCGAGATTGACGA 58.548 50.000 0.00 0.00 37.50 4.20
90 91 1.452110 TCCGTACCGAGATTGACGAA 58.548 50.000 0.00 0.00 37.50 3.85
91 92 1.131126 TCCGTACCGAGATTGACGAAC 59.869 52.381 0.00 0.00 37.50 3.95
92 93 1.542544 CGTACCGAGATTGACGAACC 58.457 55.000 0.00 0.00 37.50 3.62
93 94 1.135603 CGTACCGAGATTGACGAACCA 60.136 52.381 0.00 0.00 37.50 3.67
94 95 2.669113 CGTACCGAGATTGACGAACCAA 60.669 50.000 0.00 0.00 37.50 3.67
95 96 2.536761 ACCGAGATTGACGAACCAAA 57.463 45.000 0.00 0.00 0.00 3.28
96 97 2.841215 ACCGAGATTGACGAACCAAAA 58.159 42.857 0.00 0.00 0.00 2.44
97 98 3.207778 ACCGAGATTGACGAACCAAAAA 58.792 40.909 0.00 0.00 0.00 1.94
98 99 3.818773 ACCGAGATTGACGAACCAAAAAT 59.181 39.130 0.00 0.00 0.00 1.82
99 100 4.158384 CCGAGATTGACGAACCAAAAATG 58.842 43.478 0.00 0.00 0.00 2.32
100 101 3.603770 CGAGATTGACGAACCAAAAATGC 59.396 43.478 0.00 0.00 0.00 3.56
101 102 4.545610 GAGATTGACGAACCAAAAATGCA 58.454 39.130 0.00 0.00 0.00 3.96
102 103 5.138125 AGATTGACGAACCAAAAATGCAT 57.862 34.783 0.00 0.00 0.00 3.96
103 104 5.540911 AGATTGACGAACCAAAAATGCATT 58.459 33.333 5.99 5.99 0.00 3.56
104 105 5.634859 AGATTGACGAACCAAAAATGCATTC 59.365 36.000 13.38 0.00 0.00 2.67
105 106 3.648009 TGACGAACCAAAAATGCATTCC 58.352 40.909 13.38 0.00 0.00 3.01
106 107 3.320541 TGACGAACCAAAAATGCATTCCT 59.679 39.130 13.38 0.00 0.00 3.36
107 108 4.520874 TGACGAACCAAAAATGCATTCCTA 59.479 37.500 13.38 0.00 0.00 2.94
108 109 5.059404 ACGAACCAAAAATGCATTCCTAG 57.941 39.130 13.38 5.24 0.00 3.02
109 110 4.764823 ACGAACCAAAAATGCATTCCTAGA 59.235 37.500 13.38 0.00 0.00 2.43
110 111 5.242838 ACGAACCAAAAATGCATTCCTAGAA 59.757 36.000 13.38 0.00 0.00 2.10
111 112 5.801947 CGAACCAAAAATGCATTCCTAGAAG 59.198 40.000 13.38 1.15 0.00 2.85
112 113 5.665916 ACCAAAAATGCATTCCTAGAAGG 57.334 39.130 13.38 10.29 36.46 3.46
113 114 4.467438 ACCAAAAATGCATTCCTAGAAGGG 59.533 41.667 13.38 8.50 35.59 3.95
114 115 4.711355 CCAAAAATGCATTCCTAGAAGGGA 59.289 41.667 13.38 0.00 35.59 4.20
115 116 5.163478 CCAAAAATGCATTCCTAGAAGGGAG 60.163 44.000 13.38 0.00 35.59 4.30
116 117 5.456921 AAAATGCATTCCTAGAAGGGAGA 57.543 39.130 13.38 0.00 35.59 3.71
117 118 5.456921 AAATGCATTCCTAGAAGGGAGAA 57.543 39.130 13.38 0.00 35.59 2.87
118 119 4.703379 ATGCATTCCTAGAAGGGAGAAG 57.297 45.455 0.00 0.00 35.59 2.85
119 120 2.774234 TGCATTCCTAGAAGGGAGAAGG 59.226 50.000 0.00 0.00 35.59 3.46
120 121 2.774809 GCATTCCTAGAAGGGAGAAGGT 59.225 50.000 0.00 0.00 35.59 3.50
121 122 3.181459 GCATTCCTAGAAGGGAGAAGGTC 60.181 52.174 0.00 0.00 35.59 3.85
122 123 2.850695 TCCTAGAAGGGAGAAGGTCC 57.149 55.000 0.00 0.00 46.10 4.46
123 124 2.298951 TCCTAGAAGGGAGAAGGTCCT 58.701 52.381 0.00 0.00 46.06 3.85
124 125 2.245287 TCCTAGAAGGGAGAAGGTCCTC 59.755 54.545 0.00 0.00 46.06 3.71
125 126 2.246327 CCTAGAAGGGAGAAGGTCCTCT 59.754 54.545 0.00 0.00 46.06 3.69
126 127 2.246091 AGAAGGGAGAAGGTCCTCTG 57.754 55.000 0.00 0.00 46.06 3.35
127 128 1.435168 AGAAGGGAGAAGGTCCTCTGT 59.565 52.381 0.00 0.00 46.06 3.41
128 129 2.158081 AGAAGGGAGAAGGTCCTCTGTT 60.158 50.000 0.00 0.00 46.06 3.16
129 130 3.077695 AGAAGGGAGAAGGTCCTCTGTTA 59.922 47.826 0.00 0.00 46.06 2.41
130 131 3.562108 AGGGAGAAGGTCCTCTGTTAA 57.438 47.619 0.00 0.00 46.06 2.01
131 132 3.445987 AGGGAGAAGGTCCTCTGTTAAG 58.554 50.000 0.00 0.00 46.06 1.85
132 133 2.093394 GGGAGAAGGTCCTCTGTTAAGC 60.093 54.545 0.00 0.00 46.06 3.09
133 134 2.835156 GGAGAAGGTCCTCTGTTAAGCT 59.165 50.000 0.00 0.00 42.99 3.74
134 135 3.368948 GGAGAAGGTCCTCTGTTAAGCTG 60.369 52.174 0.00 0.00 42.99 4.24
135 136 3.243724 AGAAGGTCCTCTGTTAAGCTGT 58.756 45.455 0.00 0.00 0.00 4.40
136 137 3.259625 AGAAGGTCCTCTGTTAAGCTGTC 59.740 47.826 0.00 0.00 0.00 3.51
137 138 1.546476 AGGTCCTCTGTTAAGCTGTCG 59.454 52.381 0.00 0.00 0.00 4.35
138 139 1.272769 GGTCCTCTGTTAAGCTGTCGT 59.727 52.381 0.00 0.00 0.00 4.34
139 140 2.288886 GGTCCTCTGTTAAGCTGTCGTT 60.289 50.000 0.00 0.00 0.00 3.85
140 141 3.391049 GTCCTCTGTTAAGCTGTCGTTT 58.609 45.455 0.00 0.00 0.00 3.60
141 142 3.808174 GTCCTCTGTTAAGCTGTCGTTTT 59.192 43.478 0.00 0.00 0.00 2.43
142 143 4.056050 TCCTCTGTTAAGCTGTCGTTTTC 58.944 43.478 0.00 0.00 0.00 2.29
143 144 4.058817 CCTCTGTTAAGCTGTCGTTTTCT 58.941 43.478 0.00 0.00 0.00 2.52
144 145 5.010314 TCCTCTGTTAAGCTGTCGTTTTCTA 59.990 40.000 0.00 0.00 0.00 2.10
145 146 5.346281 CCTCTGTTAAGCTGTCGTTTTCTAG 59.654 44.000 0.00 0.00 0.00 2.43
146 147 6.080648 TCTGTTAAGCTGTCGTTTTCTAGA 57.919 37.500 0.00 0.00 0.00 2.43
147 148 6.150318 TCTGTTAAGCTGTCGTTTTCTAGAG 58.850 40.000 0.00 0.00 0.00 2.43
148 149 6.016527 TCTGTTAAGCTGTCGTTTTCTAGAGA 60.017 38.462 0.00 0.00 0.00 3.10
149 150 5.919141 TGTTAAGCTGTCGTTTTCTAGAGAC 59.081 40.000 3.49 3.49 0.00 3.36
150 151 4.585955 AAGCTGTCGTTTTCTAGAGACA 57.414 40.909 10.97 10.97 40.77 3.41
151 152 4.792521 AGCTGTCGTTTTCTAGAGACAT 57.207 40.909 11.67 0.00 41.92 3.06
152 153 5.140747 AGCTGTCGTTTTCTAGAGACATT 57.859 39.130 11.67 3.27 41.92 2.71
153 154 6.268825 AGCTGTCGTTTTCTAGAGACATTA 57.731 37.500 11.67 0.00 41.92 1.90
154 155 6.326375 AGCTGTCGTTTTCTAGAGACATTAG 58.674 40.000 11.67 4.00 41.92 1.73
155 156 6.151312 AGCTGTCGTTTTCTAGAGACATTAGA 59.849 38.462 11.67 0.00 41.92 2.10
156 157 6.251801 GCTGTCGTTTTCTAGAGACATTAGAC 59.748 42.308 11.67 8.95 41.92 2.59
157 158 7.450124 TGTCGTTTTCTAGAGACATTAGACT 57.550 36.000 8.13 0.00 38.52 3.24
158 159 8.557592 TGTCGTTTTCTAGAGACATTAGACTA 57.442 34.615 8.13 0.00 38.52 2.59
159 160 9.175312 TGTCGTTTTCTAGAGACATTAGACTAT 57.825 33.333 8.13 0.00 38.52 2.12
160 161 9.654417 GTCGTTTTCTAGAGACATTAGACTATC 57.346 37.037 5.26 0.00 34.09 2.08
161 162 8.838365 TCGTTTTCTAGAGACATTAGACTATCC 58.162 37.037 8.50 0.00 0.00 2.59
162 163 8.622157 CGTTTTCTAGAGACATTAGACTATCCA 58.378 37.037 8.50 0.00 0.00 3.41
170 171 8.986991 AGAGACATTAGACTATCCATTTCTTGT 58.013 33.333 0.00 0.00 0.00 3.16
178 179 7.429633 AGACTATCCATTTCTTGTATGTCTCG 58.570 38.462 0.00 0.00 0.00 4.04
179 180 5.986135 ACTATCCATTTCTTGTATGTCTCGC 59.014 40.000 0.00 0.00 0.00 5.03
180 181 4.471904 TCCATTTCTTGTATGTCTCGCT 57.528 40.909 0.00 0.00 0.00 4.93
181 182 4.832248 TCCATTTCTTGTATGTCTCGCTT 58.168 39.130 0.00 0.00 0.00 4.68
182 183 4.631377 TCCATTTCTTGTATGTCTCGCTTG 59.369 41.667 0.00 0.00 0.00 4.01
183 184 4.631377 CCATTTCTTGTATGTCTCGCTTGA 59.369 41.667 0.00 0.00 0.00 3.02
184 185 5.122239 CCATTTCTTGTATGTCTCGCTTGAA 59.878 40.000 0.00 0.00 0.00 2.69
185 186 6.183360 CCATTTCTTGTATGTCTCGCTTGAAT 60.183 38.462 0.00 0.00 0.00 2.57
186 187 5.784750 TTCTTGTATGTCTCGCTTGAATG 57.215 39.130 0.00 0.00 0.00 2.67
187 188 5.072040 TCTTGTATGTCTCGCTTGAATGA 57.928 39.130 0.00 0.00 0.00 2.57
188 189 5.664457 TCTTGTATGTCTCGCTTGAATGAT 58.336 37.500 0.00 0.00 0.00 2.45
189 190 5.521372 TCTTGTATGTCTCGCTTGAATGATG 59.479 40.000 0.00 0.00 0.00 3.07
190 191 5.009854 TGTATGTCTCGCTTGAATGATGA 57.990 39.130 0.00 0.00 0.00 2.92
191 192 4.805719 TGTATGTCTCGCTTGAATGATGAC 59.194 41.667 0.00 0.00 0.00 3.06
192 193 3.317603 TGTCTCGCTTGAATGATGACA 57.682 42.857 0.00 0.00 0.00 3.58
193 194 3.256558 TGTCTCGCTTGAATGATGACAG 58.743 45.455 0.00 0.00 0.00 3.51
194 195 2.030213 GTCTCGCTTGAATGATGACAGC 59.970 50.000 0.00 0.00 0.00 4.40
195 196 2.093816 TCTCGCTTGAATGATGACAGCT 60.094 45.455 0.00 0.00 0.00 4.24
196 197 3.131046 TCTCGCTTGAATGATGACAGCTA 59.869 43.478 0.00 0.00 0.00 3.32
197 198 3.190079 TCGCTTGAATGATGACAGCTAC 58.810 45.455 0.00 0.00 0.00 3.58
198 199 2.931969 CGCTTGAATGATGACAGCTACA 59.068 45.455 0.00 0.00 0.00 2.74
199 200 3.371898 CGCTTGAATGATGACAGCTACAA 59.628 43.478 0.00 0.00 0.00 2.41
200 201 4.034858 CGCTTGAATGATGACAGCTACAAT 59.965 41.667 0.00 0.00 0.00 2.71
201 202 5.271625 GCTTGAATGATGACAGCTACAATG 58.728 41.667 0.00 0.00 0.00 2.82
202 203 5.065602 GCTTGAATGATGACAGCTACAATGA 59.934 40.000 0.00 0.00 0.00 2.57
203 204 6.673154 TTGAATGATGACAGCTACAATGAG 57.327 37.500 0.00 0.00 0.00 2.90
204 205 5.981174 TGAATGATGACAGCTACAATGAGA 58.019 37.500 0.00 0.00 0.00 3.27
205 206 6.047231 TGAATGATGACAGCTACAATGAGAG 58.953 40.000 0.00 0.00 0.00 3.20
206 207 5.866159 ATGATGACAGCTACAATGAGAGA 57.134 39.130 0.00 0.00 0.00 3.10
207 208 5.665916 TGATGACAGCTACAATGAGAGAA 57.334 39.130 0.00 0.00 0.00 2.87
208 209 6.041423 TGATGACAGCTACAATGAGAGAAA 57.959 37.500 0.00 0.00 0.00 2.52
209 210 6.466812 TGATGACAGCTACAATGAGAGAAAA 58.533 36.000 0.00 0.00 0.00 2.29
210 211 6.936335 TGATGACAGCTACAATGAGAGAAAAA 59.064 34.615 0.00 0.00 0.00 1.94
211 212 6.791887 TGACAGCTACAATGAGAGAAAAAG 57.208 37.500 0.00 0.00 0.00 2.27
212 213 6.524734 TGACAGCTACAATGAGAGAAAAAGA 58.475 36.000 0.00 0.00 0.00 2.52
213 214 6.648310 TGACAGCTACAATGAGAGAAAAAGAG 59.352 38.462 0.00 0.00 0.00 2.85
214 215 5.411053 ACAGCTACAATGAGAGAAAAAGAGC 59.589 40.000 0.00 0.00 0.00 4.09
215 216 5.410746 CAGCTACAATGAGAGAAAAAGAGCA 59.589 40.000 0.00 0.00 0.00 4.26
216 217 6.093771 CAGCTACAATGAGAGAAAAAGAGCAT 59.906 38.462 0.00 0.00 0.00 3.79
217 218 6.658391 AGCTACAATGAGAGAAAAAGAGCATT 59.342 34.615 0.00 0.00 0.00 3.56
218 219 7.826252 AGCTACAATGAGAGAAAAAGAGCATTA 59.174 33.333 0.00 0.00 0.00 1.90
219 220 8.121708 GCTACAATGAGAGAAAAAGAGCATTAG 58.878 37.037 0.00 0.00 0.00 1.73
220 221 9.376075 CTACAATGAGAGAAAAAGAGCATTAGA 57.624 33.333 0.00 0.00 0.00 2.10
221 222 8.627208 ACAATGAGAGAAAAAGAGCATTAGAA 57.373 30.769 0.00 0.00 0.00 2.10
222 223 8.728833 ACAATGAGAGAAAAAGAGCATTAGAAG 58.271 33.333 0.00 0.00 0.00 2.85
223 224 7.862512 ATGAGAGAAAAAGAGCATTAGAAGG 57.137 36.000 0.00 0.00 0.00 3.46
224 225 5.645497 TGAGAGAAAAAGAGCATTAGAAGGC 59.355 40.000 0.00 0.00 35.64 4.35
225 226 5.564550 AGAGAAAAAGAGCATTAGAAGGCA 58.435 37.500 1.39 0.00 38.35 4.75
226 227 6.006449 AGAGAAAAAGAGCATTAGAAGGCAA 58.994 36.000 1.39 0.00 38.35 4.52
227 228 6.491403 AGAGAAAAAGAGCATTAGAAGGCAAA 59.509 34.615 1.39 0.00 38.35 3.68
228 229 6.685657 AGAAAAAGAGCATTAGAAGGCAAAG 58.314 36.000 1.39 0.00 38.35 2.77
229 230 6.491403 AGAAAAAGAGCATTAGAAGGCAAAGA 59.509 34.615 1.39 0.00 38.35 2.52
230 231 6.847421 AAAAGAGCATTAGAAGGCAAAGAT 57.153 33.333 1.39 0.00 38.35 2.40
231 232 6.448207 AAAGAGCATTAGAAGGCAAAGATC 57.552 37.500 1.39 0.00 38.35 2.75
232 233 5.370875 AGAGCATTAGAAGGCAAAGATCT 57.629 39.130 1.39 0.00 38.35 2.75
233 234 5.753716 AGAGCATTAGAAGGCAAAGATCTT 58.246 37.500 0.88 0.88 38.35 2.40
234 235 6.186234 AGAGCATTAGAAGGCAAAGATCTTT 58.814 36.000 15.11 15.11 38.35 2.52
235 236 6.662663 AGAGCATTAGAAGGCAAAGATCTTTT 59.337 34.615 18.16 3.82 38.35 2.27
236 237 6.628185 AGCATTAGAAGGCAAAGATCTTTTG 58.372 36.000 18.16 13.99 38.35 2.44
237 238 6.435277 AGCATTAGAAGGCAAAGATCTTTTGA 59.565 34.615 18.16 0.32 38.35 2.69
238 239 6.529477 GCATTAGAAGGCAAAGATCTTTTGAC 59.471 38.462 18.16 15.02 37.69 3.18
240 241 8.950210 CATTAGAAGGCAAAGATCTTTTGACTA 58.050 33.333 18.16 13.33 46.32 2.59
241 242 6.809630 AGAAGGCAAAGATCTTTTGACTAC 57.190 37.500 18.16 8.52 46.32 2.73
242 243 6.538263 AGAAGGCAAAGATCTTTTGACTACT 58.462 36.000 18.16 10.42 46.32 2.57
243 244 6.429385 AGAAGGCAAAGATCTTTTGACTACTG 59.571 38.462 18.16 6.56 46.32 2.74
244 245 5.869579 AGGCAAAGATCTTTTGACTACTGA 58.130 37.500 18.16 0.00 45.28 3.41
245 246 5.703130 AGGCAAAGATCTTTTGACTACTGAC 59.297 40.000 18.16 7.57 45.28 3.51
246 247 5.470098 GGCAAAGATCTTTTGACTACTGACA 59.530 40.000 18.16 0.00 34.68 3.58
247 248 6.150140 GGCAAAGATCTTTTGACTACTGACAT 59.850 38.462 18.16 0.00 34.68 3.06
248 249 7.020010 GCAAAGATCTTTTGACTACTGACATG 58.980 38.462 18.16 4.01 0.00 3.21
249 250 7.308229 GCAAAGATCTTTTGACTACTGACATGT 60.308 37.037 18.16 0.00 0.00 3.21
250 251 7.664082 AAGATCTTTTGACTACTGACATGTG 57.336 36.000 1.15 0.00 0.00 3.21
251 252 6.997655 AGATCTTTTGACTACTGACATGTGA 58.002 36.000 1.15 0.00 0.00 3.58
252 253 7.445121 AGATCTTTTGACTACTGACATGTGAA 58.555 34.615 1.15 0.00 0.00 3.18
253 254 7.933577 AGATCTTTTGACTACTGACATGTGAAA 59.066 33.333 1.15 0.00 0.00 2.69
254 255 7.857734 TCTTTTGACTACTGACATGTGAAAA 57.142 32.000 1.15 0.00 0.00 2.29
255 256 7.919690 TCTTTTGACTACTGACATGTGAAAAG 58.080 34.615 1.15 15.12 42.15 2.27
256 257 5.673337 TTGACTACTGACATGTGAAAAGC 57.327 39.130 1.15 0.00 0.00 3.51
257 258 4.065088 TGACTACTGACATGTGAAAAGCC 58.935 43.478 1.15 0.00 0.00 4.35
258 259 4.065088 GACTACTGACATGTGAAAAGCCA 58.935 43.478 1.15 0.00 0.00 4.75
259 260 4.460263 ACTACTGACATGTGAAAAGCCAA 58.540 39.130 1.15 0.00 0.00 4.52
260 261 4.887071 ACTACTGACATGTGAAAAGCCAAA 59.113 37.500 1.15 0.00 0.00 3.28
261 262 4.311816 ACTGACATGTGAAAAGCCAAAG 57.688 40.909 1.15 0.00 0.00 2.77
262 263 3.068590 ACTGACATGTGAAAAGCCAAAGG 59.931 43.478 1.15 0.00 0.00 3.11
273 274 2.440946 GCCAAAGGCCCTGAAAAGT 58.559 52.632 0.00 0.00 44.06 2.66
274 275 0.033920 GCCAAAGGCCCTGAAAAGTG 59.966 55.000 0.00 0.00 44.06 3.16
275 276 1.703411 CCAAAGGCCCTGAAAAGTGA 58.297 50.000 0.00 0.00 0.00 3.41
276 277 2.250924 CCAAAGGCCCTGAAAAGTGAT 58.749 47.619 0.00 0.00 0.00 3.06
277 278 2.028748 CCAAAGGCCCTGAAAAGTGATG 60.029 50.000 0.00 0.00 0.00 3.07
278 279 1.928868 AAGGCCCTGAAAAGTGATGG 58.071 50.000 0.00 0.00 0.00 3.51
279 280 0.779997 AGGCCCTGAAAAGTGATGGT 59.220 50.000 0.00 0.00 0.00 3.55
280 281 1.992557 AGGCCCTGAAAAGTGATGGTA 59.007 47.619 0.00 0.00 0.00 3.25
281 282 2.025887 AGGCCCTGAAAAGTGATGGTAG 60.026 50.000 0.00 0.00 0.00 3.18
282 283 2.026262 GGCCCTGAAAAGTGATGGTAGA 60.026 50.000 0.00 0.00 0.00 2.59
283 284 3.274288 GCCCTGAAAAGTGATGGTAGAG 58.726 50.000 0.00 0.00 0.00 2.43
284 285 3.307762 GCCCTGAAAAGTGATGGTAGAGT 60.308 47.826 0.00 0.00 0.00 3.24
285 286 4.256920 CCCTGAAAAGTGATGGTAGAGTG 58.743 47.826 0.00 0.00 0.00 3.51
286 287 4.263068 CCCTGAAAAGTGATGGTAGAGTGT 60.263 45.833 0.00 0.00 0.00 3.55
287 288 5.046591 CCCTGAAAAGTGATGGTAGAGTGTA 60.047 44.000 0.00 0.00 0.00 2.90
288 289 6.464222 CCTGAAAAGTGATGGTAGAGTGTAA 58.536 40.000 0.00 0.00 0.00 2.41
289 290 6.369065 CCTGAAAAGTGATGGTAGAGTGTAAC 59.631 42.308 0.00 0.00 0.00 2.50
307 308 5.960105 GTGTAACTGATTCTTCATTAAGCGC 59.040 40.000 0.00 0.00 32.36 5.92
308 309 5.874810 TGTAACTGATTCTTCATTAAGCGCT 59.125 36.000 2.64 2.64 32.36 5.92
309 310 4.871993 ACTGATTCTTCATTAAGCGCTG 57.128 40.909 12.58 0.00 32.36 5.18
310 311 3.624861 ACTGATTCTTCATTAAGCGCTGG 59.375 43.478 12.58 0.71 32.36 4.85
311 312 3.609853 TGATTCTTCATTAAGCGCTGGT 58.390 40.909 12.58 0.00 32.36 4.00
312 313 4.765273 TGATTCTTCATTAAGCGCTGGTA 58.235 39.130 12.58 0.00 32.36 3.25
313 314 4.811024 TGATTCTTCATTAAGCGCTGGTAG 59.189 41.667 12.58 4.82 32.36 3.18
314 315 4.465632 TTCTTCATTAAGCGCTGGTAGA 57.534 40.909 12.58 7.26 32.36 2.59
315 316 4.046938 TCTTCATTAAGCGCTGGTAGAG 57.953 45.455 12.58 5.62 32.36 2.43
316 317 3.447586 TCTTCATTAAGCGCTGGTAGAGT 59.552 43.478 12.58 0.00 32.36 3.24
317 318 3.165058 TCATTAAGCGCTGGTAGAGTG 57.835 47.619 12.58 3.72 35.05 3.51
318 319 2.159099 TCATTAAGCGCTGGTAGAGTGG 60.159 50.000 12.58 0.00 32.26 4.00
319 320 1.552578 TTAAGCGCTGGTAGAGTGGA 58.447 50.000 12.58 0.00 32.26 4.02
320 321 1.552578 TAAGCGCTGGTAGAGTGGAA 58.447 50.000 12.58 0.00 32.26 3.53
321 322 0.037232 AAGCGCTGGTAGAGTGGAAC 60.037 55.000 12.58 0.00 32.26 3.62
339 340 5.965918 GTGGAACTGATTCTTAATTAAGCGC 59.034 40.000 18.68 0.00 34.98 5.92
340 341 5.880332 TGGAACTGATTCTTAATTAAGCGCT 59.120 36.000 18.68 2.64 34.98 5.92
341 342 6.183360 TGGAACTGATTCTTAATTAAGCGCTG 60.183 38.462 12.58 14.94 34.98 5.18
342 343 5.741388 ACTGATTCTTAATTAAGCGCTGG 57.259 39.130 12.58 11.35 33.40 4.85
343 344 5.186198 ACTGATTCTTAATTAAGCGCTGGT 58.814 37.500 12.58 11.87 33.40 4.00
344 345 6.346096 ACTGATTCTTAATTAAGCGCTGGTA 58.654 36.000 12.58 0.00 33.40 3.25
345 346 6.480320 ACTGATTCTTAATTAAGCGCTGGTAG 59.520 38.462 12.58 12.27 33.40 3.18
346 347 6.578944 TGATTCTTAATTAAGCGCTGGTAGA 58.421 36.000 12.58 5.75 33.40 2.59
347 348 6.479001 TGATTCTTAATTAAGCGCTGGTAGAC 59.521 38.462 12.58 0.00 33.40 2.59
348 349 5.593679 TCTTAATTAAGCGCTGGTAGACT 57.406 39.130 12.58 0.00 33.40 3.24
349 350 5.348986 TCTTAATTAAGCGCTGGTAGACTG 58.651 41.667 12.58 0.00 33.40 3.51
350 351 3.611766 AATTAAGCGCTGGTAGACTGT 57.388 42.857 12.58 0.00 0.00 3.55
351 352 4.730949 AATTAAGCGCTGGTAGACTGTA 57.269 40.909 12.58 0.00 0.00 2.74
352 353 4.730949 ATTAAGCGCTGGTAGACTGTAA 57.269 40.909 12.58 2.25 0.00 2.41
353 354 2.365408 AAGCGCTGGTAGACTGTAAC 57.635 50.000 12.58 0.00 0.00 2.50
354 355 1.546961 AGCGCTGGTAGACTGTAACT 58.453 50.000 10.39 0.00 0.00 2.24
553 555 1.154205 CGTGTGATTGATCCTCCCGC 61.154 60.000 0.00 0.00 0.00 6.13
577 579 1.539560 TTGCGGCTGCTTCTCTCTCT 61.540 55.000 20.27 0.00 43.34 3.10
583 585 1.947597 CTGCTTCTCTCTCTGCCGCT 61.948 60.000 0.00 0.00 0.00 5.52
602 604 2.432628 GTTCCCCACGTCTGCTCG 60.433 66.667 0.00 0.00 0.00 5.03
604 606 2.927580 TTCCCCACGTCTGCTCGTC 61.928 63.158 0.00 0.00 42.27 4.20
605 607 4.778415 CCCCACGTCTGCTCGTCG 62.778 72.222 0.00 0.00 42.27 5.12
606 608 3.733960 CCCACGTCTGCTCGTCGA 61.734 66.667 0.00 0.00 42.27 4.20
607 609 2.502080 CCACGTCTGCTCGTCGAC 60.502 66.667 5.18 5.18 42.27 4.20
608 610 2.251371 CACGTCTGCTCGTCGACA 59.749 61.111 17.16 1.87 42.27 4.35
609 611 1.794003 CACGTCTGCTCGTCGACAG 60.794 63.158 17.16 12.82 42.27 3.51
611 613 2.677979 CGTCTGCTCGTCGACAGGA 61.678 63.158 17.16 12.00 34.57 3.86
612 614 1.579932 GTCTGCTCGTCGACAGGAA 59.420 57.895 17.16 0.59 34.57 3.36
613 615 0.455295 GTCTGCTCGTCGACAGGAAG 60.455 60.000 17.16 11.06 34.57 3.46
616 618 2.995872 GCTCGTCGACAGGAAGCCT 61.996 63.158 17.16 0.00 0.00 4.58
617 619 1.137825 CTCGTCGACAGGAAGCCTC 59.862 63.158 17.16 0.00 0.00 4.70
618 620 2.202492 CGTCGACAGGAAGCCTCG 60.202 66.667 17.16 0.00 0.00 4.63
619 621 2.687805 CGTCGACAGGAAGCCTCGA 61.688 63.158 17.16 0.00 29.48 4.04
620 622 1.153997 GTCGACAGGAAGCCTCGAC 60.154 63.158 11.55 10.96 41.28 4.20
621 623 1.602605 TCGACAGGAAGCCTCGACA 60.603 57.895 0.00 0.00 27.47 4.35
622 624 1.153939 CGACAGGAAGCCTCGACAG 60.154 63.158 0.00 0.00 0.00 3.51
624 626 1.228894 ACAGGAAGCCTCGACAGGA 60.229 57.895 0.00 0.00 43.65 3.86
625 627 0.832135 ACAGGAAGCCTCGACAGGAA 60.832 55.000 0.00 0.00 43.65 3.36
626 628 0.108424 CAGGAAGCCTCGACAGGAAG 60.108 60.000 0.00 0.00 43.65 3.46
629 631 3.302347 AAGCCTCGACAGGAAGCCG 62.302 63.158 0.00 0.00 43.65 5.52
630 632 4.821589 GCCTCGACAGGAAGCCGG 62.822 72.222 0.00 0.00 43.65 6.13
632 634 2.182030 CTCGACAGGAAGCCGGTC 59.818 66.667 1.90 6.67 43.46 4.79
633 635 2.282958 TCGACAGGAAGCCGGTCT 60.283 61.111 1.90 0.00 44.42 3.85
634 636 2.182030 CGACAGGAAGCCGGTCTC 59.818 66.667 1.90 0.00 44.42 3.36
635 637 2.579738 GACAGGAAGCCGGTCTCC 59.420 66.667 14.33 14.33 43.53 3.71
636 638 1.985116 GACAGGAAGCCGGTCTCCT 60.985 63.158 17.96 17.96 43.53 3.69
637 639 1.950973 GACAGGAAGCCGGTCTCCTC 61.951 65.000 20.14 9.61 43.53 3.71
638 640 1.684049 CAGGAAGCCGGTCTCCTCT 60.684 63.158 20.14 2.39 0.00 3.69
639 641 1.684049 AGGAAGCCGGTCTCCTCTG 60.684 63.158 17.96 0.00 0.00 3.35
640 642 2.185608 GAAGCCGGTCTCCTCTGC 59.814 66.667 1.90 0.00 0.00 4.26
641 643 3.378399 GAAGCCGGTCTCCTCTGCC 62.378 68.421 1.90 0.00 0.00 4.85
661 663 3.458163 CCCGCCCGCTTCTACAGA 61.458 66.667 0.00 0.00 0.00 3.41
662 664 2.797278 CCCGCCCGCTTCTACAGAT 61.797 63.158 0.00 0.00 0.00 2.90
663 665 1.300233 CCGCCCGCTTCTACAGATC 60.300 63.158 0.00 0.00 0.00 2.75
664 666 1.658717 CGCCCGCTTCTACAGATCG 60.659 63.158 0.00 0.00 0.00 3.69
665 667 1.734137 GCCCGCTTCTACAGATCGA 59.266 57.895 0.00 0.00 0.00 3.59
666 668 0.318275 GCCCGCTTCTACAGATCGAG 60.318 60.000 0.00 0.00 0.00 4.04
667 669 1.309950 CCCGCTTCTACAGATCGAGA 58.690 55.000 0.00 0.00 0.00 4.04
668 670 1.676529 CCCGCTTCTACAGATCGAGAA 59.323 52.381 0.00 7.32 0.00 2.87
669 671 2.294791 CCCGCTTCTACAGATCGAGAAT 59.705 50.000 7.83 0.00 31.45 2.40
672 674 3.610585 CGCTTCTACAGATCGAGAATCCC 60.611 52.174 7.83 1.77 34.67 3.85
687 689 1.310904 ATCCCGACTTCTACTCGAGC 58.689 55.000 13.61 0.00 32.65 5.03
690 692 0.302288 CCGACTTCTACTCGAGCTCG 59.698 60.000 30.03 30.03 41.45 5.03
692 694 1.654317 GACTTCTACTCGAGCTCGGA 58.346 55.000 33.98 20.99 40.29 4.55
696 698 0.600518 TCTACTCGAGCTCGGATCGG 60.601 60.000 33.98 20.03 40.54 4.18
697 699 1.570347 CTACTCGAGCTCGGATCGGG 61.570 65.000 33.98 13.58 46.16 5.14
721 735 2.352457 CCGTTCCGCTCGATCGAG 60.352 66.667 35.25 35.25 44.56 4.04
743 757 4.514577 CCGCCTGTTCCGCTCGAT 62.515 66.667 0.00 0.00 0.00 3.59
744 758 2.956964 CGCCTGTTCCGCTCGATC 60.957 66.667 0.00 0.00 0.00 3.69
745 759 2.956964 GCCTGTTCCGCTCGATCG 60.957 66.667 9.36 9.36 0.00 3.69
746 760 2.798689 CCTGTTCCGCTCGATCGA 59.201 61.111 18.32 18.32 0.00 3.59
747 761 1.298713 CCTGTTCCGCTCGATCGAG 60.299 63.158 35.25 35.25 44.56 4.04
748 762 1.298713 CTGTTCCGCTCGATCGAGG 60.299 63.158 38.18 28.66 42.19 4.63
749 763 2.655685 GTTCCGCTCGATCGAGGC 60.656 66.667 38.18 29.43 42.19 4.70
750 764 3.900892 TTCCGCTCGATCGAGGCC 61.901 66.667 38.18 24.95 42.19 5.19
769 783 4.514577 CCGCCTGTTCCGCTCGAT 62.515 66.667 0.00 0.00 0.00 3.59
770 784 2.956964 CGCCTGTTCCGCTCGATC 60.957 66.667 0.00 0.00 0.00 3.69
771 785 2.956964 GCCTGTTCCGCTCGATCG 60.957 66.667 9.36 9.36 0.00 3.69
772 786 2.798689 CCTGTTCCGCTCGATCGA 59.201 61.111 18.32 18.32 0.00 3.59
773 787 1.138883 CCTGTTCCGCTCGATCGAA 59.861 57.895 19.92 0.46 0.00 3.71
774 788 0.867753 CCTGTTCCGCTCGATCGAAG 60.868 60.000 19.92 15.34 0.00 3.79
775 789 0.867753 CTGTTCCGCTCGATCGAAGG 60.868 60.000 25.12 25.12 0.00 3.46
776 790 2.104331 TTCCGCTCGATCGAAGGC 59.896 61.111 25.85 21.74 0.00 4.35
777 791 3.426117 TTCCGCTCGATCGAAGGCC 62.426 63.158 25.85 12.49 0.00 5.19
778 792 4.951963 CCGCTCGATCGAAGGCCC 62.952 72.222 19.92 4.53 0.00 5.80
779 793 4.951963 CGCTCGATCGAAGGCCCC 62.952 72.222 19.92 2.83 0.00 5.80
780 794 4.951963 GCTCGATCGAAGGCCCCG 62.952 72.222 19.92 3.43 0.00 5.73
781 795 4.951963 CTCGATCGAAGGCCCCGC 62.952 72.222 19.92 0.00 0.00 6.13
801 815 2.488355 GTTCCGCTCGGATCGACA 59.512 61.111 12.15 0.00 44.74 4.35
802 816 1.872679 GTTCCGCTCGGATCGACAC 60.873 63.158 12.15 3.20 44.74 3.67
803 817 3.060020 TTCCGCTCGGATCGACACC 62.060 63.158 12.15 0.00 44.74 4.16
804 818 3.822192 CCGCTCGGATCGACACCA 61.822 66.667 1.35 0.00 37.50 4.17
805 819 2.278206 CGCTCGGATCGACACCAG 60.278 66.667 10.42 7.90 0.00 4.00
806 820 2.583593 GCTCGGATCGACACCAGC 60.584 66.667 10.42 12.51 0.00 4.85
807 821 3.069980 GCTCGGATCGACACCAGCT 62.070 63.158 18.19 0.00 32.82 4.24
808 822 1.513158 CTCGGATCGACACCAGCTT 59.487 57.895 10.42 0.00 0.00 3.74
809 823 0.526524 CTCGGATCGACACCAGCTTC 60.527 60.000 10.42 0.00 0.00 3.86
810 824 1.874019 CGGATCGACACCAGCTTCG 60.874 63.158 10.42 0.00 36.55 3.79
812 826 0.802607 GGATCGACACCAGCTTCGAC 60.803 60.000 10.23 5.30 46.41 4.20
813 827 0.171455 GATCGACACCAGCTTCGACT 59.829 55.000 10.23 1.22 46.41 4.18
814 828 0.171455 ATCGACACCAGCTTCGACTC 59.829 55.000 10.23 0.00 46.41 3.36
815 829 1.797933 CGACACCAGCTTCGACTCG 60.798 63.158 0.00 0.00 37.43 4.18
816 830 1.286260 GACACCAGCTTCGACTCGT 59.714 57.895 0.00 0.00 0.00 4.18
817 831 0.729816 GACACCAGCTTCGACTCGTC 60.730 60.000 0.00 0.00 0.00 4.20
818 832 1.444553 CACCAGCTTCGACTCGTCC 60.445 63.158 0.00 0.00 0.00 4.79
819 833 1.604023 ACCAGCTTCGACTCGTCCT 60.604 57.895 0.00 0.00 0.00 3.85
820 834 1.137825 CCAGCTTCGACTCGTCCTC 59.862 63.158 0.00 0.00 0.00 3.71
821 835 1.137825 CAGCTTCGACTCGTCCTCC 59.862 63.158 0.00 0.00 0.00 4.30
822 836 2.100603 GCTTCGACTCGTCCTCCG 59.899 66.667 0.00 0.00 38.13 4.63
823 837 2.100603 CTTCGACTCGTCCTCCGC 59.899 66.667 0.00 0.00 36.19 5.54
824 838 2.359602 TTCGACTCGTCCTCCGCT 60.360 61.111 0.00 0.00 36.19 5.52
825 839 2.312398 CTTCGACTCGTCCTCCGCTC 62.312 65.000 0.00 0.00 36.19 5.03
826 840 4.225340 CGACTCGTCCTCCGCTCG 62.225 72.222 0.00 0.00 36.19 5.03
827 841 2.818714 GACTCGTCCTCCGCTCGA 60.819 66.667 0.00 0.00 36.19 4.04
828 842 2.359602 ACTCGTCCTCCGCTCGAA 60.360 61.111 0.00 0.00 36.19 3.71
829 843 1.716826 GACTCGTCCTCCGCTCGAAT 61.717 60.000 0.00 0.00 36.19 3.34
830 844 1.009449 CTCGTCCTCCGCTCGAATC 60.009 63.158 0.00 0.00 36.19 2.52
831 845 2.352457 CGTCCTCCGCTCGAATCG 60.352 66.667 0.00 0.00 0.00 3.34
833 847 3.900892 TCCTCCGCTCGAATCGGC 61.901 66.667 17.92 4.40 46.05 5.54
834 848 4.951963 CCTCCGCTCGAATCGGCC 62.952 72.222 17.92 0.00 46.05 6.13
835 849 3.905678 CTCCGCTCGAATCGGCCT 61.906 66.667 17.92 0.00 46.05 5.19
853 867 0.106894 CTGCCCCTTTATCTCCCGAC 59.893 60.000 0.00 0.00 0.00 4.79
880 899 4.351054 CTGCCCCGCCCTGTCTTT 62.351 66.667 0.00 0.00 0.00 2.52
906 925 1.686052 GAGGCCAGATCGAGATTCTGT 59.314 52.381 5.01 0.00 0.00 3.41
990 1368 3.129462 CGAGACTCTGCCTTCTGTTGATA 59.871 47.826 0.03 0.00 0.00 2.15
1069 1481 4.641989 TCTTCGATGGTACTAACTACACCC 59.358 45.833 0.00 0.00 0.00 4.61
1164 1576 3.307906 CCACGTCCGGTTCCTCCA 61.308 66.667 0.00 0.00 35.57 3.86
1250 1662 1.407989 GGCTAAGCTTGCTGATGAGGT 60.408 52.381 9.86 0.00 0.00 3.85
1255 1667 1.280133 AGCTTGCTGATGAGGTTGCTA 59.720 47.619 0.00 0.00 0.00 3.49
1269 1681 4.122776 AGGTTGCTAATCGTGCTTATGAG 58.877 43.478 0.00 0.00 0.00 2.90
1308 1720 1.402613 GAGGAGGCTCTTCAGACGTAC 59.597 57.143 20.50 0.00 29.68 3.67
1361 1773 1.134610 TGATGATGATGCTCGTGCTGT 60.135 47.619 11.19 0.00 40.48 4.40
1551 1963 5.308014 ACTGTTGATGACTTCTATGCACAA 58.692 37.500 0.00 0.00 0.00 3.33
1553 1965 6.262944 ACTGTTGATGACTTCTATGCACAAAA 59.737 34.615 0.00 0.00 0.00 2.44
1780 2195 0.169672 GACTCGCTTACGTGGTGCTA 59.830 55.000 0.00 0.00 41.18 3.49
1813 2228 0.612174 TCCCTCTGTGCTCGCTACTT 60.612 55.000 0.00 0.00 0.00 2.24
1823 2238 0.250513 CTCGCTACTTGGGCTCCTTT 59.749 55.000 0.00 0.00 0.00 3.11
2031 2449 2.685897 GTCATCTACCTCGACAGCTTCT 59.314 50.000 0.00 0.00 0.00 2.85
2046 2464 1.670967 GCTTCTGCCATTGCTTTGACC 60.671 52.381 0.00 0.00 38.71 4.02
2119 2537 1.180029 GACGGGTACTGCTGGTTCTA 58.820 55.000 0.00 0.00 39.14 2.10
2125 2543 3.958798 GGGTACTGCTGGTTCTATGACTA 59.041 47.826 0.00 0.00 0.00 2.59
2368 2792 5.160607 TGTTCCTCGACTTACCATGAATT 57.839 39.130 0.00 0.00 0.00 2.17
2406 2830 4.866508 ACTTACTGATTCTGGTTGTCGA 57.133 40.909 0.00 0.00 0.00 4.20
2707 3131 2.295349 GAGTGTCAGGGTTGTCGTCTTA 59.705 50.000 0.00 0.00 0.00 2.10
3105 3529 3.194329 AGCATCGTCATCTTCTTGAGACA 59.806 43.478 0.00 0.00 37.17 3.41
3231 3655 1.959226 TGGTGTTCCTTTCGAGCGC 60.959 57.895 0.00 0.00 34.23 5.92
3252 3676 3.120165 GCCTTTTTGATCGTTCTCCTGAC 60.120 47.826 0.00 0.00 0.00 3.51
3479 3903 2.359900 CCCATCTTCCTCGACCTTTTG 58.640 52.381 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 6.331369 TCCTTTTTATTTCCTGAACTGCAG 57.669 37.500 13.48 13.48 44.49 4.41
11 12 6.642540 CACTTCCTTTTTATTTCCTGAACTGC 59.357 38.462 0.00 0.00 0.00 4.40
14 15 7.284919 TCCACTTCCTTTTTATTTCCTGAAC 57.715 36.000 0.00 0.00 0.00 3.18
15 16 9.594936 TTATCCACTTCCTTTTTATTTCCTGAA 57.405 29.630 0.00 0.00 0.00 3.02
16 17 9.768215 ATTATCCACTTCCTTTTTATTTCCTGA 57.232 29.630 0.00 0.00 0.00 3.86
74 75 2.642139 TGGTTCGTCAATCTCGGTAC 57.358 50.000 0.00 0.00 0.00 3.34
75 76 3.663995 TTTGGTTCGTCAATCTCGGTA 57.336 42.857 0.00 0.00 0.00 4.02
76 77 2.536761 TTTGGTTCGTCAATCTCGGT 57.463 45.000 0.00 0.00 0.00 4.69
77 78 3.889196 TTTTTGGTTCGTCAATCTCGG 57.111 42.857 0.00 0.00 0.00 4.63
78 79 3.603770 GCATTTTTGGTTCGTCAATCTCG 59.396 43.478 0.00 0.00 0.00 4.04
79 80 4.545610 TGCATTTTTGGTTCGTCAATCTC 58.454 39.130 0.00 0.00 0.00 2.75
80 81 4.582701 TGCATTTTTGGTTCGTCAATCT 57.417 36.364 0.00 0.00 0.00 2.40
81 82 5.163963 GGAATGCATTTTTGGTTCGTCAATC 60.164 40.000 14.33 0.00 0.00 2.67
82 83 4.690280 GGAATGCATTTTTGGTTCGTCAAT 59.310 37.500 14.33 0.00 0.00 2.57
83 84 4.054671 GGAATGCATTTTTGGTTCGTCAA 58.945 39.130 14.33 0.00 0.00 3.18
84 85 3.320541 AGGAATGCATTTTTGGTTCGTCA 59.679 39.130 14.33 0.00 0.00 4.35
85 86 3.913089 AGGAATGCATTTTTGGTTCGTC 58.087 40.909 14.33 0.00 0.00 4.20
86 87 4.764823 TCTAGGAATGCATTTTTGGTTCGT 59.235 37.500 14.33 3.97 0.00 3.85
87 88 5.309323 TCTAGGAATGCATTTTTGGTTCG 57.691 39.130 14.33 0.00 0.00 3.95
88 89 6.101997 CCTTCTAGGAATGCATTTTTGGTTC 58.898 40.000 14.33 0.00 37.67 3.62
89 90 5.046376 CCCTTCTAGGAATGCATTTTTGGTT 60.046 40.000 14.33 0.00 37.67 3.67
90 91 4.467438 CCCTTCTAGGAATGCATTTTTGGT 59.533 41.667 14.33 0.00 37.67 3.67
91 92 4.711355 TCCCTTCTAGGAATGCATTTTTGG 59.289 41.667 14.33 7.21 37.67 3.28
92 93 5.653769 TCTCCCTTCTAGGAATGCATTTTTG 59.346 40.000 14.33 6.68 37.67 2.44
93 94 5.831103 TCTCCCTTCTAGGAATGCATTTTT 58.169 37.500 14.33 7.57 37.67 1.94
94 95 5.456921 TCTCCCTTCTAGGAATGCATTTT 57.543 39.130 14.33 7.94 37.67 1.82
95 96 5.444176 CTTCTCCCTTCTAGGAATGCATTT 58.556 41.667 14.33 0.55 37.67 2.32
96 97 4.141298 CCTTCTCCCTTCTAGGAATGCATT 60.141 45.833 12.83 12.83 37.67 3.56
97 98 3.393941 CCTTCTCCCTTCTAGGAATGCAT 59.606 47.826 0.00 0.00 37.67 3.96
98 99 2.774234 CCTTCTCCCTTCTAGGAATGCA 59.226 50.000 0.00 0.00 37.67 3.96
99 100 2.774809 ACCTTCTCCCTTCTAGGAATGC 59.225 50.000 0.00 0.00 37.67 3.56
100 101 3.389656 GGACCTTCTCCCTTCTAGGAATG 59.610 52.174 0.00 0.00 37.67 2.67
101 102 3.276307 AGGACCTTCTCCCTTCTAGGAAT 59.724 47.826 0.00 0.00 40.53 3.01
102 103 2.660556 AGGACCTTCTCCCTTCTAGGAA 59.339 50.000 0.00 0.00 40.53 3.36
103 104 2.245287 GAGGACCTTCTCCCTTCTAGGA 59.755 54.545 0.00 0.00 40.53 2.94
104 105 2.246327 AGAGGACCTTCTCCCTTCTAGG 59.754 54.545 0.00 0.00 40.53 3.02
105 106 3.295973 CAGAGGACCTTCTCCCTTCTAG 58.704 54.545 0.00 0.00 40.53 2.43
106 107 2.655407 ACAGAGGACCTTCTCCCTTCTA 59.345 50.000 0.00 0.00 40.53 2.10
107 108 1.435168 ACAGAGGACCTTCTCCCTTCT 59.565 52.381 0.00 0.00 40.53 2.85
108 109 1.945580 ACAGAGGACCTTCTCCCTTC 58.054 55.000 0.00 0.00 40.53 3.46
109 110 2.424684 AACAGAGGACCTTCTCCCTT 57.575 50.000 0.00 0.00 40.53 3.95
110 111 3.445987 CTTAACAGAGGACCTTCTCCCT 58.554 50.000 0.00 0.00 40.53 4.20
111 112 2.093394 GCTTAACAGAGGACCTTCTCCC 60.093 54.545 0.00 0.00 40.53 4.30
112 113 2.835156 AGCTTAACAGAGGACCTTCTCC 59.165 50.000 0.00 0.00 39.81 3.71
113 114 3.259625 ACAGCTTAACAGAGGACCTTCTC 59.740 47.826 0.00 0.00 0.00 2.87
114 115 3.243724 ACAGCTTAACAGAGGACCTTCT 58.756 45.455 0.00 0.00 0.00 2.85
115 116 3.591023 GACAGCTTAACAGAGGACCTTC 58.409 50.000 0.00 0.00 0.00 3.46
116 117 2.028930 CGACAGCTTAACAGAGGACCTT 60.029 50.000 0.00 0.00 0.00 3.50
117 118 1.546476 CGACAGCTTAACAGAGGACCT 59.454 52.381 0.00 0.00 0.00 3.85
118 119 1.272769 ACGACAGCTTAACAGAGGACC 59.727 52.381 0.00 0.00 0.00 4.46
119 120 2.726832 ACGACAGCTTAACAGAGGAC 57.273 50.000 0.00 0.00 0.00 3.85
120 121 3.746045 AAACGACAGCTTAACAGAGGA 57.254 42.857 0.00 0.00 0.00 3.71
121 122 4.058817 AGAAAACGACAGCTTAACAGAGG 58.941 43.478 0.00 0.00 0.00 3.69
122 123 6.150318 TCTAGAAAACGACAGCTTAACAGAG 58.850 40.000 0.00 0.00 0.00 3.35
123 124 6.016527 TCTCTAGAAAACGACAGCTTAACAGA 60.017 38.462 0.00 0.00 0.00 3.41
124 125 6.088350 GTCTCTAGAAAACGACAGCTTAACAG 59.912 42.308 5.26 0.00 0.00 3.16
125 126 5.919141 GTCTCTAGAAAACGACAGCTTAACA 59.081 40.000 5.26 0.00 0.00 2.41
126 127 5.919141 TGTCTCTAGAAAACGACAGCTTAAC 59.081 40.000 8.13 0.00 33.01 2.01
127 128 6.080648 TGTCTCTAGAAAACGACAGCTTAA 57.919 37.500 8.13 0.00 33.01 1.85
128 129 5.700722 TGTCTCTAGAAAACGACAGCTTA 57.299 39.130 8.13 0.00 33.01 3.09
129 130 4.585955 TGTCTCTAGAAAACGACAGCTT 57.414 40.909 8.13 0.00 33.01 3.74
130 131 4.792521 ATGTCTCTAGAAAACGACAGCT 57.207 40.909 15.33 1.00 39.46 4.24
131 132 6.251801 GTCTAATGTCTCTAGAAAACGACAGC 59.748 42.308 15.33 3.57 39.46 4.40
132 133 7.531716 AGTCTAATGTCTCTAGAAAACGACAG 58.468 38.462 15.33 5.43 39.46 3.51
133 134 7.450124 AGTCTAATGTCTCTAGAAAACGACA 57.550 36.000 13.19 13.19 40.27 4.35
134 135 9.654417 GATAGTCTAATGTCTCTAGAAAACGAC 57.346 37.037 0.00 0.00 0.00 4.34
135 136 8.838365 GGATAGTCTAATGTCTCTAGAAAACGA 58.162 37.037 0.00 0.00 0.00 3.85
136 137 8.622157 TGGATAGTCTAATGTCTCTAGAAAACG 58.378 37.037 0.00 0.00 0.00 3.60
144 145 8.986991 ACAAGAAATGGATAGTCTAATGTCTCT 58.013 33.333 0.00 0.00 0.00 3.10
152 153 8.568794 CGAGACATACAAGAAATGGATAGTCTA 58.431 37.037 0.00 0.00 39.13 2.59
153 154 7.429633 CGAGACATACAAGAAATGGATAGTCT 58.570 38.462 0.00 0.00 40.45 3.24
154 155 6.144724 GCGAGACATACAAGAAATGGATAGTC 59.855 42.308 0.00 0.00 33.81 2.59
155 156 5.986135 GCGAGACATACAAGAAATGGATAGT 59.014 40.000 0.00 0.00 28.71 2.12
156 157 6.219473 AGCGAGACATACAAGAAATGGATAG 58.781 40.000 0.00 0.00 28.71 2.08
157 158 6.161855 AGCGAGACATACAAGAAATGGATA 57.838 37.500 0.00 0.00 28.71 2.59
158 159 5.028549 AGCGAGACATACAAGAAATGGAT 57.971 39.130 0.00 0.00 30.31 3.41
159 160 4.471904 AGCGAGACATACAAGAAATGGA 57.528 40.909 0.00 0.00 0.00 3.41
160 161 4.631377 TCAAGCGAGACATACAAGAAATGG 59.369 41.667 0.00 0.00 0.00 3.16
161 162 5.784750 TCAAGCGAGACATACAAGAAATG 57.215 39.130 0.00 0.00 0.00 2.32
162 163 6.595326 TCATTCAAGCGAGACATACAAGAAAT 59.405 34.615 0.00 0.00 0.00 2.17
163 164 5.931724 TCATTCAAGCGAGACATACAAGAAA 59.068 36.000 0.00 0.00 0.00 2.52
164 165 5.478407 TCATTCAAGCGAGACATACAAGAA 58.522 37.500 0.00 0.00 0.00 2.52
165 166 5.072040 TCATTCAAGCGAGACATACAAGA 57.928 39.130 0.00 0.00 0.00 3.02
166 167 5.521372 TCATCATTCAAGCGAGACATACAAG 59.479 40.000 0.00 0.00 0.00 3.16
167 168 5.291858 GTCATCATTCAAGCGAGACATACAA 59.708 40.000 0.00 0.00 0.00 2.41
168 169 4.805719 GTCATCATTCAAGCGAGACATACA 59.194 41.667 0.00 0.00 0.00 2.29
169 170 4.805719 TGTCATCATTCAAGCGAGACATAC 59.194 41.667 0.00 0.00 30.43 2.39
170 171 5.009854 TGTCATCATTCAAGCGAGACATA 57.990 39.130 0.00 0.00 30.43 2.29
171 172 3.865446 TGTCATCATTCAAGCGAGACAT 58.135 40.909 0.00 0.00 30.43 3.06
172 173 3.256558 CTGTCATCATTCAAGCGAGACA 58.743 45.455 0.00 0.00 33.92 3.41
173 174 2.030213 GCTGTCATCATTCAAGCGAGAC 59.970 50.000 0.00 0.00 0.00 3.36
174 175 2.093816 AGCTGTCATCATTCAAGCGAGA 60.094 45.455 0.00 0.00 0.00 4.04
175 176 2.277969 AGCTGTCATCATTCAAGCGAG 58.722 47.619 0.00 0.00 0.00 5.03
176 177 2.391616 AGCTGTCATCATTCAAGCGA 57.608 45.000 0.00 0.00 0.00 4.93
177 178 2.931969 TGTAGCTGTCATCATTCAAGCG 59.068 45.455 0.00 0.00 0.00 4.68
178 179 4.952262 TTGTAGCTGTCATCATTCAAGC 57.048 40.909 0.00 0.00 0.00 4.01
179 180 6.537660 TCTCATTGTAGCTGTCATCATTCAAG 59.462 38.462 0.00 0.00 0.00 3.02
180 181 6.408869 TCTCATTGTAGCTGTCATCATTCAA 58.591 36.000 0.00 0.00 0.00 2.69
181 182 5.981174 TCTCATTGTAGCTGTCATCATTCA 58.019 37.500 0.00 0.00 0.00 2.57
182 183 6.279123 TCTCTCATTGTAGCTGTCATCATTC 58.721 40.000 0.00 0.00 0.00 2.67
183 184 6.231258 TCTCTCATTGTAGCTGTCATCATT 57.769 37.500 0.00 0.00 0.00 2.57
184 185 5.866159 TCTCTCATTGTAGCTGTCATCAT 57.134 39.130 0.00 0.00 0.00 2.45
185 186 5.665916 TTCTCTCATTGTAGCTGTCATCA 57.334 39.130 0.00 0.00 0.00 3.07
186 187 6.974932 TTTTCTCTCATTGTAGCTGTCATC 57.025 37.500 0.00 0.00 0.00 2.92
187 188 7.164122 TCTTTTTCTCTCATTGTAGCTGTCAT 58.836 34.615 0.00 0.00 0.00 3.06
188 189 6.524734 TCTTTTTCTCTCATTGTAGCTGTCA 58.475 36.000 0.00 0.00 0.00 3.58
189 190 6.402011 GCTCTTTTTCTCTCATTGTAGCTGTC 60.402 42.308 0.00 0.00 0.00 3.51
190 191 5.411053 GCTCTTTTTCTCTCATTGTAGCTGT 59.589 40.000 0.00 0.00 0.00 4.40
191 192 5.410746 TGCTCTTTTTCTCTCATTGTAGCTG 59.589 40.000 0.00 0.00 0.00 4.24
192 193 5.555017 TGCTCTTTTTCTCTCATTGTAGCT 58.445 37.500 0.00 0.00 0.00 3.32
193 194 5.869753 TGCTCTTTTTCTCTCATTGTAGC 57.130 39.130 0.00 0.00 0.00 3.58
194 195 9.376075 TCTAATGCTCTTTTTCTCTCATTGTAG 57.624 33.333 0.00 0.00 0.00 2.74
195 196 9.725019 TTCTAATGCTCTTTTTCTCTCATTGTA 57.275 29.630 0.00 0.00 0.00 2.41
196 197 8.627208 TTCTAATGCTCTTTTTCTCTCATTGT 57.373 30.769 0.00 0.00 0.00 2.71
197 198 8.182881 CCTTCTAATGCTCTTTTTCTCTCATTG 58.817 37.037 0.00 0.00 0.00 2.82
198 199 7.148103 GCCTTCTAATGCTCTTTTTCTCTCATT 60.148 37.037 0.00 0.00 0.00 2.57
199 200 6.318396 GCCTTCTAATGCTCTTTTTCTCTCAT 59.682 38.462 0.00 0.00 0.00 2.90
200 201 5.645497 GCCTTCTAATGCTCTTTTTCTCTCA 59.355 40.000 0.00 0.00 0.00 3.27
201 202 5.645497 TGCCTTCTAATGCTCTTTTTCTCTC 59.355 40.000 0.00 0.00 0.00 3.20
202 203 5.564550 TGCCTTCTAATGCTCTTTTTCTCT 58.435 37.500 0.00 0.00 0.00 3.10
203 204 5.886960 TGCCTTCTAATGCTCTTTTTCTC 57.113 39.130 0.00 0.00 0.00 2.87
204 205 6.491403 TCTTTGCCTTCTAATGCTCTTTTTCT 59.509 34.615 0.00 0.00 0.00 2.52
205 206 6.681777 TCTTTGCCTTCTAATGCTCTTTTTC 58.318 36.000 0.00 0.00 0.00 2.29
206 207 6.655078 TCTTTGCCTTCTAATGCTCTTTTT 57.345 33.333 0.00 0.00 0.00 1.94
207 208 6.662663 AGATCTTTGCCTTCTAATGCTCTTTT 59.337 34.615 0.00 0.00 0.00 2.27
208 209 6.186234 AGATCTTTGCCTTCTAATGCTCTTT 58.814 36.000 0.00 0.00 0.00 2.52
209 210 5.753716 AGATCTTTGCCTTCTAATGCTCTT 58.246 37.500 0.00 0.00 0.00 2.85
210 211 5.370875 AGATCTTTGCCTTCTAATGCTCT 57.629 39.130 0.00 0.00 0.00 4.09
211 212 6.448207 AAAGATCTTTGCCTTCTAATGCTC 57.552 37.500 19.86 0.00 0.00 4.26
212 213 6.435277 TCAAAAGATCTTTGCCTTCTAATGCT 59.565 34.615 21.15 0.00 32.36 3.79
213 214 6.529477 GTCAAAAGATCTTTGCCTTCTAATGC 59.471 38.462 21.15 5.70 32.36 3.56
214 215 7.824672 AGTCAAAAGATCTTTGCCTTCTAATG 58.175 34.615 21.15 12.00 32.36 1.90
215 216 8.951243 GTAGTCAAAAGATCTTTGCCTTCTAAT 58.049 33.333 21.15 0.00 32.36 1.73
216 217 8.157476 AGTAGTCAAAAGATCTTTGCCTTCTAA 58.843 33.333 21.15 0.83 32.36 2.10
217 218 7.604164 CAGTAGTCAAAAGATCTTTGCCTTCTA 59.396 37.037 21.15 14.98 32.36 2.10
218 219 6.429385 CAGTAGTCAAAAGATCTTTGCCTTCT 59.571 38.462 21.15 15.38 32.36 2.85
219 220 6.428159 TCAGTAGTCAAAAGATCTTTGCCTTC 59.572 38.462 21.15 13.70 32.36 3.46
220 221 6.205658 GTCAGTAGTCAAAAGATCTTTGCCTT 59.794 38.462 21.15 10.33 32.36 4.35
221 222 5.703130 GTCAGTAGTCAAAAGATCTTTGCCT 59.297 40.000 21.15 17.44 32.36 4.75
222 223 5.470098 TGTCAGTAGTCAAAAGATCTTTGCC 59.530 40.000 21.15 11.72 32.36 4.52
223 224 6.545504 TGTCAGTAGTCAAAAGATCTTTGC 57.454 37.500 21.15 13.90 32.36 3.68
224 225 8.013947 CACATGTCAGTAGTCAAAAGATCTTTG 58.986 37.037 21.15 14.58 32.36 2.77
225 226 7.933577 TCACATGTCAGTAGTCAAAAGATCTTT 59.066 33.333 15.11 15.11 0.00 2.52
226 227 7.445121 TCACATGTCAGTAGTCAAAAGATCTT 58.555 34.615 0.88 0.88 0.00 2.40
227 228 6.997655 TCACATGTCAGTAGTCAAAAGATCT 58.002 36.000 0.00 0.00 0.00 2.75
228 229 7.658179 TTCACATGTCAGTAGTCAAAAGATC 57.342 36.000 0.00 0.00 0.00 2.75
229 230 8.450578 TTTTCACATGTCAGTAGTCAAAAGAT 57.549 30.769 0.00 0.00 0.00 2.40
230 231 7.467267 GCTTTTCACATGTCAGTAGTCAAAAGA 60.467 37.037 12.76 0.00 0.00 2.52
231 232 6.634436 GCTTTTCACATGTCAGTAGTCAAAAG 59.366 38.462 0.00 7.26 0.00 2.27
232 233 6.459573 GGCTTTTCACATGTCAGTAGTCAAAA 60.460 38.462 0.00 0.00 0.00 2.44
233 234 5.008613 GGCTTTTCACATGTCAGTAGTCAAA 59.991 40.000 0.00 0.00 0.00 2.69
234 235 4.515191 GGCTTTTCACATGTCAGTAGTCAA 59.485 41.667 0.00 0.00 0.00 3.18
235 236 4.065088 GGCTTTTCACATGTCAGTAGTCA 58.935 43.478 0.00 0.00 0.00 3.41
236 237 4.065088 TGGCTTTTCACATGTCAGTAGTC 58.935 43.478 0.00 0.00 0.00 2.59
237 238 4.085357 TGGCTTTTCACATGTCAGTAGT 57.915 40.909 0.00 0.00 0.00 2.73
238 239 5.437289 TTTGGCTTTTCACATGTCAGTAG 57.563 39.130 0.00 0.00 0.00 2.57
239 240 4.278170 CCTTTGGCTTTTCACATGTCAGTA 59.722 41.667 0.00 0.00 0.00 2.74
240 241 3.068590 CCTTTGGCTTTTCACATGTCAGT 59.931 43.478 0.00 0.00 0.00 3.41
241 242 3.645884 CCTTTGGCTTTTCACATGTCAG 58.354 45.455 0.00 0.00 0.00 3.51
242 243 2.224018 GCCTTTGGCTTTTCACATGTCA 60.224 45.455 0.00 0.00 46.69 3.58
243 244 2.407090 GCCTTTGGCTTTTCACATGTC 58.593 47.619 0.00 0.00 46.69 3.06
244 245 2.531522 GCCTTTGGCTTTTCACATGT 57.468 45.000 0.00 0.00 46.69 3.21
256 257 1.703411 TCACTTTTCAGGGCCTTTGG 58.297 50.000 1.32 0.00 0.00 3.28
257 258 2.028748 CCATCACTTTTCAGGGCCTTTG 60.029 50.000 1.32 1.46 0.00 2.77
258 259 2.250924 CCATCACTTTTCAGGGCCTTT 58.749 47.619 1.32 0.00 0.00 3.11
259 260 1.147817 ACCATCACTTTTCAGGGCCTT 59.852 47.619 1.32 0.00 0.00 4.35
260 261 0.779997 ACCATCACTTTTCAGGGCCT 59.220 50.000 0.00 0.00 0.00 5.19
261 262 2.026262 TCTACCATCACTTTTCAGGGCC 60.026 50.000 0.00 0.00 0.00 5.80
262 263 3.274288 CTCTACCATCACTTTTCAGGGC 58.726 50.000 0.00 0.00 0.00 5.19
263 264 4.256920 CACTCTACCATCACTTTTCAGGG 58.743 47.826 0.00 0.00 0.00 4.45
264 265 4.899502 ACACTCTACCATCACTTTTCAGG 58.100 43.478 0.00 0.00 0.00 3.86
265 266 7.116948 CAGTTACACTCTACCATCACTTTTCAG 59.883 40.741 0.00 0.00 0.00 3.02
266 267 6.929049 CAGTTACACTCTACCATCACTTTTCA 59.071 38.462 0.00 0.00 0.00 2.69
267 268 7.152645 TCAGTTACACTCTACCATCACTTTTC 58.847 38.462 0.00 0.00 0.00 2.29
268 269 7.062749 TCAGTTACACTCTACCATCACTTTT 57.937 36.000 0.00 0.00 0.00 2.27
269 270 6.665992 TCAGTTACACTCTACCATCACTTT 57.334 37.500 0.00 0.00 0.00 2.66
270 271 6.859112 ATCAGTTACACTCTACCATCACTT 57.141 37.500 0.00 0.00 0.00 3.16
271 272 6.665680 AGAATCAGTTACACTCTACCATCACT 59.334 38.462 0.00 0.00 0.00 3.41
272 273 6.868622 AGAATCAGTTACACTCTACCATCAC 58.131 40.000 0.00 0.00 0.00 3.06
273 274 7.178451 TGAAGAATCAGTTACACTCTACCATCA 59.822 37.037 0.00 0.00 0.00 3.07
274 275 7.548097 TGAAGAATCAGTTACACTCTACCATC 58.452 38.462 0.00 0.00 0.00 3.51
275 276 7.482169 TGAAGAATCAGTTACACTCTACCAT 57.518 36.000 0.00 0.00 0.00 3.55
276 277 6.911250 TGAAGAATCAGTTACACTCTACCA 57.089 37.500 0.00 0.00 0.00 3.25
277 278 9.871238 TTAATGAAGAATCAGTTACACTCTACC 57.129 33.333 0.00 0.00 39.39 3.18
279 280 9.587772 GCTTAATGAAGAATCAGTTACACTCTA 57.412 33.333 0.00 0.00 39.39 2.43
280 281 7.276658 CGCTTAATGAAGAATCAGTTACACTCT 59.723 37.037 0.00 0.00 39.39 3.24
281 282 7.394872 CGCTTAATGAAGAATCAGTTACACTC 58.605 38.462 0.00 0.00 39.39 3.51
282 283 6.183360 GCGCTTAATGAAGAATCAGTTACACT 60.183 38.462 0.00 0.00 39.39 3.55
283 284 5.960105 GCGCTTAATGAAGAATCAGTTACAC 59.040 40.000 0.00 0.00 39.39 2.90
284 285 5.874810 AGCGCTTAATGAAGAATCAGTTACA 59.125 36.000 2.64 0.00 39.39 2.41
285 286 6.188175 CAGCGCTTAATGAAGAATCAGTTAC 58.812 40.000 7.50 0.00 39.39 2.50
286 287 5.294306 CCAGCGCTTAATGAAGAATCAGTTA 59.706 40.000 7.50 0.00 39.39 2.24
287 288 4.095483 CCAGCGCTTAATGAAGAATCAGTT 59.905 41.667 7.50 0.00 39.39 3.16
288 289 3.624861 CCAGCGCTTAATGAAGAATCAGT 59.375 43.478 7.50 0.00 39.39 3.41
289 290 3.624861 ACCAGCGCTTAATGAAGAATCAG 59.375 43.478 7.50 0.00 39.39 2.90
290 291 3.609853 ACCAGCGCTTAATGAAGAATCA 58.390 40.909 7.50 0.00 40.57 2.57
291 292 5.050490 TCTACCAGCGCTTAATGAAGAATC 58.950 41.667 7.50 0.00 34.25 2.52
292 293 5.023533 TCTACCAGCGCTTAATGAAGAAT 57.976 39.130 7.50 0.00 34.25 2.40
293 294 4.081642 ACTCTACCAGCGCTTAATGAAGAA 60.082 41.667 7.50 0.00 34.25 2.52
294 295 3.447586 ACTCTACCAGCGCTTAATGAAGA 59.552 43.478 7.50 4.32 34.25 2.87
295 296 3.553511 CACTCTACCAGCGCTTAATGAAG 59.446 47.826 7.50 3.89 35.60 3.02
296 297 3.521560 CACTCTACCAGCGCTTAATGAA 58.478 45.455 7.50 0.00 0.00 2.57
297 298 2.159099 CCACTCTACCAGCGCTTAATGA 60.159 50.000 7.50 3.25 0.00 2.57
298 299 2.159099 TCCACTCTACCAGCGCTTAATG 60.159 50.000 7.50 0.00 0.00 1.90
299 300 2.108168 TCCACTCTACCAGCGCTTAAT 58.892 47.619 7.50 0.00 0.00 1.40
300 301 1.552578 TCCACTCTACCAGCGCTTAA 58.447 50.000 7.50 0.00 0.00 1.85
301 302 1.203994 GTTCCACTCTACCAGCGCTTA 59.796 52.381 7.50 0.00 0.00 3.09
302 303 0.037232 GTTCCACTCTACCAGCGCTT 60.037 55.000 7.50 0.00 0.00 4.68
303 304 0.900647 AGTTCCACTCTACCAGCGCT 60.901 55.000 2.64 2.64 0.00 5.92
304 305 0.737715 CAGTTCCACTCTACCAGCGC 60.738 60.000 0.00 0.00 0.00 5.92
305 306 0.888619 TCAGTTCCACTCTACCAGCG 59.111 55.000 0.00 0.00 0.00 5.18
306 307 3.196685 AGAATCAGTTCCACTCTACCAGC 59.803 47.826 0.00 0.00 34.81 4.85
307 308 5.413309 AAGAATCAGTTCCACTCTACCAG 57.587 43.478 0.00 0.00 34.81 4.00
308 309 6.928348 TTAAGAATCAGTTCCACTCTACCA 57.072 37.500 0.00 0.00 34.81 3.25
309 310 9.886132 TTAATTAAGAATCAGTTCCACTCTACC 57.114 33.333 0.00 0.00 34.81 3.18
311 312 9.601217 GCTTAATTAAGAATCAGTTCCACTCTA 57.399 33.333 26.00 0.00 35.33 2.43
312 313 7.278868 CGCTTAATTAAGAATCAGTTCCACTCT 59.721 37.037 26.00 0.00 35.33 3.24
313 314 7.402640 CGCTTAATTAAGAATCAGTTCCACTC 58.597 38.462 26.00 4.89 35.33 3.51
314 315 6.183360 GCGCTTAATTAAGAATCAGTTCCACT 60.183 38.462 26.00 0.00 35.33 4.00
315 316 5.965918 GCGCTTAATTAAGAATCAGTTCCAC 59.034 40.000 26.00 5.44 35.33 4.02
316 317 5.880332 AGCGCTTAATTAAGAATCAGTTCCA 59.120 36.000 26.00 0.00 35.33 3.53
317 318 6.195165 CAGCGCTTAATTAAGAATCAGTTCC 58.805 40.000 26.00 6.53 35.33 3.62
318 319 6.183360 ACCAGCGCTTAATTAAGAATCAGTTC 60.183 38.462 26.00 7.16 35.33 3.01
319 320 5.648092 ACCAGCGCTTAATTAAGAATCAGTT 59.352 36.000 26.00 8.43 35.33 3.16
320 321 5.186198 ACCAGCGCTTAATTAAGAATCAGT 58.814 37.500 26.00 14.62 35.33 3.41
321 322 5.741388 ACCAGCGCTTAATTAAGAATCAG 57.259 39.130 26.00 14.08 35.33 2.90
322 323 6.479001 GTCTACCAGCGCTTAATTAAGAATCA 59.521 38.462 26.00 5.55 35.33 2.57
323 324 6.702282 AGTCTACCAGCGCTTAATTAAGAATC 59.298 38.462 26.00 14.21 35.33 2.52
324 325 6.480320 CAGTCTACCAGCGCTTAATTAAGAAT 59.520 38.462 26.00 9.77 35.33 2.40
325 326 5.810587 CAGTCTACCAGCGCTTAATTAAGAA 59.189 40.000 26.00 0.00 35.33 2.52
326 327 5.105473 ACAGTCTACCAGCGCTTAATTAAGA 60.105 40.000 26.00 2.10 35.33 2.10
327 328 5.109903 ACAGTCTACCAGCGCTTAATTAAG 58.890 41.667 19.08 19.08 36.40 1.85
328 329 5.080969 ACAGTCTACCAGCGCTTAATTAA 57.919 39.130 7.50 0.00 0.00 1.40
329 330 4.730949 ACAGTCTACCAGCGCTTAATTA 57.269 40.909 7.50 0.00 0.00 1.40
330 331 3.611766 ACAGTCTACCAGCGCTTAATT 57.388 42.857 7.50 0.00 0.00 1.40
331 332 4.159879 AGTTACAGTCTACCAGCGCTTAAT 59.840 41.667 7.50 0.00 0.00 1.40
332 333 3.508793 AGTTACAGTCTACCAGCGCTTAA 59.491 43.478 7.50 0.00 0.00 1.85
333 334 3.087031 AGTTACAGTCTACCAGCGCTTA 58.913 45.455 7.50 0.00 0.00 3.09
334 335 1.893801 AGTTACAGTCTACCAGCGCTT 59.106 47.619 7.50 0.00 0.00 4.68
335 336 1.546961 AGTTACAGTCTACCAGCGCT 58.453 50.000 2.64 2.64 0.00 5.92
336 337 1.993370 CAAGTTACAGTCTACCAGCGC 59.007 52.381 0.00 0.00 0.00 5.92
337 338 3.299340 ACAAGTTACAGTCTACCAGCG 57.701 47.619 0.00 0.00 0.00 5.18
338 339 6.022163 TCTAACAAGTTACAGTCTACCAGC 57.978 41.667 0.00 0.00 0.00 4.85
339 340 7.216973 ACTCTAACAAGTTACAGTCTACCAG 57.783 40.000 0.00 0.00 0.00 4.00
340 341 7.592885 AACTCTAACAAGTTACAGTCTACCA 57.407 36.000 2.15 0.00 37.71 3.25
384 385 8.287503 CCTTATACAACGGGATAAATACAAAGC 58.712 37.037 0.00 0.00 0.00 3.51
558 560 1.079543 GAGAGAGAAGCAGCCGCAA 60.080 57.895 0.00 0.00 42.27 4.85
559 561 1.981312 AGAGAGAGAAGCAGCCGCA 60.981 57.895 0.00 0.00 42.27 5.69
602 604 1.153997 GTCGAGGCTTCCTGTCGAC 60.154 63.158 9.11 9.11 41.28 4.20
604 606 1.153939 CTGTCGAGGCTTCCTGTCG 60.154 63.158 0.00 0.00 31.76 4.35
605 607 1.216710 CCTGTCGAGGCTTCCTGTC 59.783 63.158 0.00 0.00 31.76 3.51
606 608 0.832135 TTCCTGTCGAGGCTTCCTGT 60.832 55.000 0.00 0.00 39.57 4.00
607 609 0.108424 CTTCCTGTCGAGGCTTCCTG 60.108 60.000 0.00 0.00 39.57 3.86
608 610 1.893919 GCTTCCTGTCGAGGCTTCCT 61.894 60.000 0.00 0.00 40.37 3.36
609 611 1.448717 GCTTCCTGTCGAGGCTTCC 60.449 63.158 0.00 0.00 40.37 3.46
611 613 2.665603 GGCTTCCTGTCGAGGCTT 59.334 61.111 0.00 0.00 43.04 4.35
617 619 2.182030 GAGACCGGCTTCCTGTCG 59.818 66.667 0.00 0.00 41.55 4.35
618 620 1.950973 GAGGAGACCGGCTTCCTGTC 61.951 65.000 27.07 13.37 37.90 3.51
619 621 1.985116 GAGGAGACCGGCTTCCTGT 60.985 63.158 27.07 8.85 31.88 4.00
620 622 1.684049 AGAGGAGACCGGCTTCCTG 60.684 63.158 27.07 0.00 31.88 3.86
621 623 1.684049 CAGAGGAGACCGGCTTCCT 60.684 63.158 23.45 23.45 34.91 3.36
622 624 2.896443 CAGAGGAGACCGGCTTCC 59.104 66.667 15.33 15.33 0.00 3.46
624 626 3.394836 GGCAGAGGAGACCGGCTT 61.395 66.667 0.00 0.00 0.00 4.35
644 646 2.701163 GATCTGTAGAAGCGGGCGGG 62.701 65.000 0.00 0.00 0.00 6.13
645 647 1.300233 GATCTGTAGAAGCGGGCGG 60.300 63.158 0.00 0.00 0.00 6.13
646 648 1.658717 CGATCTGTAGAAGCGGGCG 60.659 63.158 0.00 0.00 0.00 6.13
647 649 0.318275 CTCGATCTGTAGAAGCGGGC 60.318 60.000 7.38 0.00 0.00 6.13
648 650 1.309950 TCTCGATCTGTAGAAGCGGG 58.690 55.000 7.38 4.92 0.00 6.13
649 651 3.560503 GATTCTCGATCTGTAGAAGCGG 58.439 50.000 7.72 1.23 35.32 5.52
650 652 3.560503 GGATTCTCGATCTGTAGAAGCG 58.439 50.000 9.85 0.00 38.66 4.68
651 653 3.610585 CGGGATTCTCGATCTGTAGAAGC 60.611 52.174 0.00 8.32 37.39 3.86
652 654 3.815962 TCGGGATTCTCGATCTGTAGAAG 59.184 47.826 4.09 0.00 35.32 2.85
653 655 3.564644 GTCGGGATTCTCGATCTGTAGAA 59.435 47.826 12.49 4.98 38.93 2.10
654 656 3.139850 GTCGGGATTCTCGATCTGTAGA 58.860 50.000 12.49 0.00 38.93 2.59
655 657 3.142951 AGTCGGGATTCTCGATCTGTAG 58.857 50.000 12.49 0.00 38.93 2.74
656 658 3.210232 AGTCGGGATTCTCGATCTGTA 57.790 47.619 12.49 0.00 38.93 2.74
657 659 2.060050 AGTCGGGATTCTCGATCTGT 57.940 50.000 12.49 0.00 38.93 3.41
658 660 2.621055 AGAAGTCGGGATTCTCGATCTG 59.379 50.000 12.49 0.00 38.93 2.90
659 661 2.938838 AGAAGTCGGGATTCTCGATCT 58.061 47.619 12.49 9.00 38.93 2.75
660 662 3.816523 AGTAGAAGTCGGGATTCTCGATC 59.183 47.826 12.49 6.68 38.05 3.69
661 663 3.816523 GAGTAGAAGTCGGGATTCTCGAT 59.183 47.826 12.49 0.00 38.05 3.59
662 664 3.204526 GAGTAGAAGTCGGGATTCTCGA 58.795 50.000 4.09 4.09 38.05 4.04
663 665 2.032722 CGAGTAGAAGTCGGGATTCTCG 60.033 54.545 0.00 0.00 37.40 4.04
664 666 3.204526 TCGAGTAGAAGTCGGGATTCTC 58.795 50.000 4.47 0.00 41.15 2.87
665 667 3.207778 CTCGAGTAGAAGTCGGGATTCT 58.792 50.000 3.62 3.74 43.97 2.40
666 668 2.287129 GCTCGAGTAGAAGTCGGGATTC 60.287 54.545 15.13 0.00 43.97 2.52
667 669 1.677052 GCTCGAGTAGAAGTCGGGATT 59.323 52.381 15.13 0.00 43.97 3.01
668 670 1.134037 AGCTCGAGTAGAAGTCGGGAT 60.134 52.381 15.13 0.00 43.97 3.85
669 671 0.252479 AGCTCGAGTAGAAGTCGGGA 59.748 55.000 15.13 0.00 43.97 5.14
672 674 0.302288 CCGAGCTCGAGTAGAAGTCG 59.698 60.000 36.59 12.33 42.10 4.18
706 708 2.655685 GCCTCGATCGAGCGGAAC 60.656 66.667 34.54 18.69 40.69 3.62
728 742 2.956964 CGATCGAGCGGAACAGGC 60.957 66.667 16.65 0.00 0.00 4.85
729 743 1.298713 CTCGATCGAGCGGAACAGG 60.299 63.158 30.41 6.51 35.31 4.00
730 744 1.298713 CCTCGATCGAGCGGAACAG 60.299 63.158 34.54 18.16 40.69 3.16
731 745 2.798689 CCTCGATCGAGCGGAACA 59.201 61.111 34.54 2.16 40.69 3.18
732 746 2.655685 GCCTCGATCGAGCGGAAC 60.656 66.667 34.54 18.69 40.69 3.62
733 747 3.900892 GGCCTCGATCGAGCGGAA 61.901 66.667 34.54 3.42 40.69 4.30
752 766 4.514577 ATCGAGCGGAACAGGCGG 62.515 66.667 0.00 0.00 35.00 6.13
753 767 2.956964 GATCGAGCGGAACAGGCG 60.957 66.667 0.00 0.00 35.00 5.52
754 768 2.884087 TTCGATCGAGCGGAACAGGC 62.884 60.000 24.18 0.00 0.00 4.85
755 769 0.867753 CTTCGATCGAGCGGAACAGG 60.868 60.000 24.18 0.00 0.00 4.00
756 770 0.867753 CCTTCGATCGAGCGGAACAG 60.868 60.000 24.18 14.59 0.00 3.16
757 771 1.138883 CCTTCGATCGAGCGGAACA 59.861 57.895 24.18 0.00 0.00 3.18
758 772 2.231618 GCCTTCGATCGAGCGGAAC 61.232 63.158 28.96 5.70 0.00 3.62
759 773 2.104331 GCCTTCGATCGAGCGGAA 59.896 61.111 28.96 14.51 0.00 4.30
760 774 3.900892 GGCCTTCGATCGAGCGGA 61.901 66.667 28.96 14.69 0.00 5.54
761 775 4.951963 GGGCCTTCGATCGAGCGG 62.952 72.222 24.18 23.57 0.00 5.52
762 776 4.951963 GGGGCCTTCGATCGAGCG 62.952 72.222 18.51 18.51 0.00 5.03
763 777 4.951963 CGGGGCCTTCGATCGAGC 62.952 72.222 18.54 18.37 0.00 5.03
764 778 4.951963 GCGGGGCCTTCGATCGAG 62.952 72.222 18.54 8.98 0.00 4.04
787 801 3.758088 CTGGTGTCGATCCGAGCGG 62.758 68.421 6.16 1.74 36.23 5.52
788 802 2.278206 CTGGTGTCGATCCGAGCG 60.278 66.667 0.00 0.00 36.23 5.03
789 803 2.564553 AAGCTGGTGTCGATCCGAGC 62.565 60.000 11.57 11.57 36.23 5.03
790 804 0.526524 GAAGCTGGTGTCGATCCGAG 60.527 60.000 0.00 0.00 36.23 4.63
791 805 1.511305 GAAGCTGGTGTCGATCCGA 59.489 57.895 0.00 0.00 0.00 4.55
792 806 1.874019 CGAAGCTGGTGTCGATCCG 60.874 63.158 0.00 0.00 39.64 4.18
793 807 0.802607 GTCGAAGCTGGTGTCGATCC 60.803 60.000 11.11 0.00 46.91 3.36
794 808 0.171455 AGTCGAAGCTGGTGTCGATC 59.829 55.000 11.11 5.94 46.91 3.69
795 809 0.171455 GAGTCGAAGCTGGTGTCGAT 59.829 55.000 11.11 1.80 46.91 3.59
796 810 1.579932 GAGTCGAAGCTGGTGTCGA 59.420 57.895 4.16 4.16 43.61 4.20
797 811 1.797933 CGAGTCGAAGCTGGTGTCG 60.798 63.158 6.73 0.00 38.62 4.35
798 812 0.729816 GACGAGTCGAAGCTGGTGTC 60.730 60.000 21.50 0.00 0.00 3.67
799 813 1.286260 GACGAGTCGAAGCTGGTGT 59.714 57.895 21.50 0.00 0.00 4.16
800 814 1.444553 GGACGAGTCGAAGCTGGTG 60.445 63.158 21.50 0.00 0.00 4.17
801 815 1.587933 GAGGACGAGTCGAAGCTGGT 61.588 60.000 21.50 0.00 0.00 4.00
802 816 1.137825 GAGGACGAGTCGAAGCTGG 59.862 63.158 21.50 0.00 0.00 4.85
803 817 1.137825 GGAGGACGAGTCGAAGCTG 59.862 63.158 21.50 0.00 0.00 4.24
804 818 3.593318 GGAGGACGAGTCGAAGCT 58.407 61.111 21.50 0.00 0.00 3.74
823 837 4.918201 GGGGCAGGCCGATTCGAG 62.918 72.222 7.83 0.00 36.85 4.04
825 839 2.602746 TAAAGGGGCAGGCCGATTCG 62.603 60.000 6.98 0.00 36.85 3.34
826 840 0.178990 ATAAAGGGGCAGGCCGATTC 60.179 55.000 6.98 0.00 36.85 2.52
827 841 0.178990 GATAAAGGGGCAGGCCGATT 60.179 55.000 6.98 7.02 36.85 3.34
828 842 1.062488 AGATAAAGGGGCAGGCCGAT 61.062 55.000 6.98 0.00 36.85 4.18
829 843 1.692749 AGATAAAGGGGCAGGCCGA 60.693 57.895 6.98 0.00 36.85 5.54
830 844 1.227973 GAGATAAAGGGGCAGGCCG 60.228 63.158 6.98 0.00 36.85 6.13
831 845 1.151679 GGAGATAAAGGGGCAGGCC 59.848 63.158 3.77 3.77 0.00 5.19
832 846 1.151679 GGGAGATAAAGGGGCAGGC 59.848 63.158 0.00 0.00 0.00 4.85
833 847 1.054406 TCGGGAGATAAAGGGGCAGG 61.054 60.000 0.00 0.00 0.00 4.85
834 848 0.106894 GTCGGGAGATAAAGGGGCAG 59.893 60.000 0.00 0.00 43.27 4.85
835 849 0.326238 AGTCGGGAGATAAAGGGGCA 60.326 55.000 0.00 0.00 43.27 5.36
880 899 3.586961 CGATCTGGCCTCGAGCGA 61.587 66.667 22.77 0.58 42.31 4.93
906 925 0.322636 AGAAGACGAGCCTCGGAAGA 60.323 55.000 19.61 0.00 45.59 2.87
1069 1481 0.167470 CGCATGAAGCCAGTGAACTG 59.833 55.000 0.00 3.35 43.40 3.16
1200 1612 0.946221 CGGCCTGATTAGCATCCGTC 60.946 60.000 0.00 0.00 37.59 4.79
1250 1662 4.099419 TCTCCTCATAAGCACGATTAGCAA 59.901 41.667 0.00 0.00 0.00 3.91
1255 1667 2.366916 CCCTCTCCTCATAAGCACGATT 59.633 50.000 0.00 0.00 0.00 3.34
1269 1681 3.282885 CTCATAAGCCAAAACCCTCTCC 58.717 50.000 0.00 0.00 0.00 3.71
1308 1720 1.901591 AAACAGACAGAGCACCATGG 58.098 50.000 11.19 11.19 0.00 3.66
1551 1963 1.312815 GGCGCCAGATAGCAGAATTT 58.687 50.000 24.80 0.00 34.54 1.82
1553 1965 0.250209 CTGGCGCCAGATAGCAGAAT 60.250 55.000 46.72 0.00 46.30 2.40
1692 2104 1.522806 AAACAACTGAGCACGCCGA 60.523 52.632 0.00 0.00 0.00 5.54
2031 2449 1.865788 GCTCGGTCAAAGCAATGGCA 61.866 55.000 0.00 0.00 44.61 4.92
2046 2464 4.582701 AAGTCTCAGAATATCCTGCTCG 57.417 45.455 0.00 0.00 34.28 5.03
2368 2792 4.947388 AGTAAGTTGACCAGCAGAAAACAA 59.053 37.500 0.00 0.00 0.00 2.83
2707 3131 3.423539 TGGTAACTGAATCTGCTTGCT 57.576 42.857 0.00 0.00 37.61 3.91
3105 3529 1.065102 GCAATCATCAATGCACGAGCT 59.935 47.619 6.36 0.00 42.12 4.09
3231 3655 4.319177 AGTCAGGAGAACGATCAAAAAGG 58.681 43.478 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.