AutoCloner

Multiple sequence alignment - TraesCS3B01G221900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G221900	chr3B	100.000	2411	0	0	1	2411	277098755	277101165	0.000000e+00	4453.0
1	TraesCS3B01G221900	chr3B	92.727	550	36	3	1444	1991	291101097	291100550	0.000000e+00	791.0
2	TraesCS3B01G221900	chr3B	89.462	446	30	9	1852	2281	217666074	217665630	4.530000e-152	547.0
3	TraesCS3B01G221900	chr3B	92.032	251	17	3	1444	1693	217666321	217666073	1.370000e-92	350.0
4	TraesCS3B01G221900	chr3B	89.243	251	24	3	1444	1693	233175736	233175984	6.470000e-81	311.0
5	TraesCS3B01G221900	chr3B	94.545	55	3	0	2086	2140	45196549	45196495	4.270000e-13	86.1
6	TraesCS3B01G221900	chrUn	94.934	1441	64	4	1	1440	10643097	10641665	0.000000e+00	2248.0
7	TraesCS3B01G221900	chrUn	94.737	57	1	2	2292	2347	320373417	320373362	1.190000e-13	87.9
8	TraesCS3B01G221900	chrUn	94.737	57	1	2	2292	2347	320376775	320376720	1.190000e-13	87.9
9	TraesCS3B01G221900	chrUn	94.737	57	1	2	2292	2347	367347584	367347639	1.190000e-13	87.9
10	TraesCS3B01G221900	chrUn	92.727	55	4	0	2086	2140	38816501	38816555	1.990000e-11	80.5
11	TraesCS3B01G221900	chrUn	92.727	55	4	0	2086	2140	38823079	38823133	1.990000e-11	80.5
12	TraesCS3B01G221900	chr3A	95.951	1062	36	2	7	1068	112398367	112397313	0.000000e+00	1716.0
13	TraesCS3B01G221900	chr3A	96.021	377	14	1	1064	1440	112384643	112384268	1.580000e-171	612.0
14	TraesCS3B01G221900	chr2B	93.802	968	50	3	481	1440	746260789	746261754	0.000000e+00	1447.0
15	TraesCS3B01G221900	chr2B	93.996	483	20	3	1	483	746250721	746251194	0.000000e+00	723.0
16	TraesCS3B01G221900	chr2B	95.327	107	5	0	1333	1439	797184972	797185078	1.150000e-38	171.0
17	TraesCS3B01G221900	chr2B	91.463	82	7	0	320	401	391982340	391982259	1.960000e-21	113.0
18	TraesCS3B01G221900	chr6D	94.305	878	48	2	563	1440	444497884	444497009	0.000000e+00	1343.0
19	TraesCS3B01G221900	chr6D	100.000	53	0	0	2358	2410	26701381	26701433	5.490000e-17	99.0
20	TraesCS3B01G221900	chr3D	88.794	937	77	19	1444	2357	354746567	354747498	0.000000e+00	1123.0
21	TraesCS3B01G221900	chr7D	93.165	395	25	2	540	933	221001363	221000970	1.610000e-161	579.0
22	TraesCS3B01G221900	chr7D	87.284	464	26	5	918	1381	221000759	221000329	1.290000e-137	499.0
23	TraesCS3B01G221900	chr7D	100.000	53	0	0	2358	2410	240910186	240910134	5.490000e-17	99.0
24	TraesCS3B01G221900	chr7D	96.491	57	0	2	2292	2347	493078963	493078908	2.550000e-15	93.5
25	TraesCS3B01G221900	chr7D	94.737	57	1	2	2292	2347	487292916	487292861	1.190000e-13	87.9
26	TraesCS3B01G221900	chr7D	94.737	57	1	2	2292	2347	487301144	487301089	1.190000e-13	87.9
27	TraesCS3B01G221900	chr7D	94.737	57	1	2	2292	2347	487321179	487321124	1.190000e-13	87.9
28	TraesCS3B01G221900	chr7D	94.737	57	1	2	2292	2347	487325309	487325254	1.190000e-13	87.9
29	TraesCS3B01G221900	chr5D	87.847	288	23	5	2082	2357	143777064	143777351	6.430000e-86	327.0
30	TraesCS3B01G221900	chr5D	94.118	204	10	2	1852	2053	143776865	143777068	2.330000e-80	309.0
31	TraesCS3B01G221900	chr5D	100.000	54	0	0	2357	2410	361220367	361220314	1.530000e-17	100.0
32	TraesCS3B01G221900	chr5D	74.783	230	53	4	238	464	63159784	63159557	5.490000e-17	99.0
33	TraesCS3B01G221900	chr5D	100.000	53	0	0	2358	2410	361214036	361213984	5.490000e-17	99.0
34	TraesCS3B01G221900	chr5D	74.672	229	52	6	238	464	63179421	63179197	1.970000e-16	97.1
35	TraesCS3B01G221900	chr7A	89.286	168	16	2	1691	1856	655447399	655447232	2.430000e-50	209.0
36	TraesCS3B01G221900	chr5B	88.957	163	17	1	1692	1853	228278246	228278084	1.460000e-47	200.0
37	TraesCS3B01G221900	chr5B	98.148	54	1	0	2357	2410	712206096	712206043	7.100000e-16	95.3
38	TraesCS3B01G221900	chr1B	88.024	167	19	1	1689	1854	12711278	12711444	1.890000e-46	196.0
39	TraesCS3B01G221900	chr1B	100.000	55	0	0	2357	2411	136910295	136910349	4.240000e-18	102.0
40	TraesCS3B01G221900	chr1B	81.579	114	19	2	289	401	47925199	47925311	2.550000e-15	93.5
41	TraesCS3B01G221900	chr6B	88.415	164	16	3	1692	1853	668534691	668534853	6.800000e-46	195.0
42	TraesCS3B01G221900	chr2D	87.500	168	20	1	1692	1858	600160980	600160813	2.450000e-45	193.0
43	TraesCS3B01G221900	chr2A	86.517	178	20	4	1689	1862	208749069	208749246	2.450000e-45	193.0
44	TraesCS3B01G221900	chr2A	86.111	180	19	6	1689	1862	279714130	279714309	3.160000e-44	189.0
45	TraesCS3B01G221900	chr5A	83.846	130	20	1	316	445	677181229	677181101	3.260000e-24	122.0
46	TraesCS3B01G221900	chr1A	89.157	83	9	0	319	401	574815035	574814953	1.180000e-18	104.0
47	TraesCS3B01G221900	chr6A	100.000	54	0	0	2357	2410	352508884	352508831	1.530000e-17	100.0
48	TraesCS3B01G221900	chr6A	100.000	53	0	0	2358	2410	352505585	352505533	5.490000e-17	99.0
49	TraesCS3B01G221900	chr4B	100.000	54	0	0	2358	2411	567656318	567656265	1.530000e-17	100.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G221900	chr3B	277098755	277101165	2410	False	4453.0	4453	100.0000	1	2411	1	chr3B.!!$F2	2410
1	TraesCS3B01G221900	chr3B	291100550	291101097	547	True	791.0	791	92.7270	1444	1991	1	chr3B.!!$R2	547
2	TraesCS3B01G221900	chr3B	217665630	217666321	691	True	448.5	547	90.7470	1444	2281	2	chr3B.!!$R3	837
3	TraesCS3B01G221900	chrUn	10641665	10643097	1432	True	2248.0	2248	94.9340	1	1440	1	chrUn.!!$R1	1439
4	TraesCS3B01G221900	chr3A	112397313	112398367	1054	True	1716.0	1716	95.9510	7	1068	1	chr3A.!!$R2	1061
5	TraesCS3B01G221900	chr2B	746260789	746261754	965	False	1447.0	1447	93.8020	481	1440	1	chr2B.!!$F2	959
6	TraesCS3B01G221900	chr6D	444497009	444497884	875	True	1343.0	1343	94.3050	563	1440	1	chr6D.!!$R1	877
7	TraesCS3B01G221900	chr3D	354746567	354747498	931	False	1123.0	1123	88.7940	1444	2357	1	chr3D.!!$F1	913
8	TraesCS3B01G221900	chr7D	221000329	221001363	1034	True	539.0	579	90.2245	540	1381	2	chr7D.!!$R7	841

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
974	1202	1.269448	GTTGATGGCGCCTTTTCTGAA	59.731	47.619	29.7	4.25	0.0	3.02	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2276	2536	0.320374	ATCGCCCTTCACGAGACAAA	59.68	50.0	0.0	0.0	43.74	2.83	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
38	39	3.737850	CATAGGAGATGGAAGCAAGGTC	58.262	50.000	0.00	0.00	0.00	3.85
81	82	2.460853	CCACGGGGGCCCTCATATT	61.461	63.158	25.09	0.00	0.00	1.28
83	84	2.282462	CGGGGGCCCTCATATTGC	60.282	66.667	25.09	1.36	0.00	3.56
167	168	2.025037	TGCCTGGAATATGAACCTGCTT	60.025	45.455	0.00	0.00	0.00	3.91
205	206	7.031226	TGCAAGCTGATATTGAGGAAATTAC	57.969	36.000	0.00	0.00	0.00	1.89
235	236	2.668212	TTCTTCGCGTTGCCCTGG	60.668	61.111	5.77	0.00	0.00	4.45
282	283	2.304180	CCCAATGGAGTCTTCTCTGTGT	59.696	50.000	0.00	0.00	40.29	3.72
295	296	3.369175	TCTCTGTGTGATCAGCATACCT	58.631	45.455	0.00	0.00	37.78	3.08
394	395	1.833934	CATTATGGGGGTGCCCTGC	60.834	63.158	7.26	0.00	44.66	4.85
395	396	3.086764	ATTATGGGGGTGCCCTGCC	62.087	63.158	7.26	1.47	44.66	4.85
483	484	6.587226	GGAAAACAAAGTTAAACGACACCTTT	59.413	34.615	0.00	0.00	0.00	3.11
497	498	4.308265	GACACCTTTAAGTCTCTGACACC	58.692	47.826	0.46	0.00	34.60	4.16
501	502	4.409247	ACCTTTAAGTCTCTGACACCTGTT	59.591	41.667	0.46	0.00	34.60	3.16
661	662	6.831868	TGGCTACTACATCTACTTGACACATA	59.168	38.462	0.00	0.00	0.00	2.29
877	879	2.817423	GCCGAGGCTCTCAATTGCG	61.817	63.158	13.50	0.00	38.26	4.85
907	909	2.657237	CGCTCCTCCAGGTCGTTT	59.343	61.111	0.00	0.00	36.34	3.60
910	912	1.738099	CTCCTCCAGGTCGTTTGCG	60.738	63.158	0.00	0.00	39.92	4.85
974	1202	1.269448	GTTGATGGCGCCTTTTCTGAA	59.731	47.619	29.70	4.25	0.00	3.02
992	1220	3.251484	TGAAGTCAGAAGGGAATGGAGT	58.749	45.455	0.00	0.00	0.00	3.85
1262	1498	4.035909	GCTAGCTAGAGGTAGAAGTCACAC	59.964	50.000	25.15	0.00	46.05	3.82
1331	1567	0.827507	AAAATTGGACGCACTGGCCT	60.828	50.000	3.32	0.00	36.38	5.19
1339	1575	1.080093	CGCACTGGCCTTAGAACGA	60.080	57.895	3.32	0.00	36.38	3.85
1362	1598	0.682852	TGTGGTTAAGGTCTGGTCCG	59.317	55.000	0.00	0.00	0.00	4.79
1397	1633	1.603802	CTTATGTGCCGCGGATCAAAT	59.396	47.619	33.48	20.96	0.00	2.32
1489	1725	4.355437	CTGTGTTGTTTACCAAATTGCGA	58.645	39.130	0.00	0.00	34.07	5.10
1590	1827	2.783135	CTCAGCTGTACCAATGGTGTT	58.217	47.619	16.41	0.00	36.19	3.32
1646	1883	5.064071	GGATTGTCCGCTTTCTAGAAAAGAG	59.936	44.000	18.25	13.23	35.05	2.85
1706	1943	1.677052	GCTACTACTCCCTCTGTTCCG	59.323	57.143	0.00	0.00	0.00	4.30
1721	1958	7.553044	CCCTCTGTTCCGAAATATAAGTCTTTT	59.447	37.037	0.00	0.00	0.00	2.27
1820	2059	6.542370	CCGTATGTGGTTTCTAATGGAATCTT	59.458	38.462	0.00	0.00	33.53	2.40
2000	2244	6.478512	AAAGGTTAATTTTTCTGCTGGTGA	57.521	33.333	0.00	0.00	0.00	4.02
2028	2272	0.249238	CTCACGCAGATGGACCTAGC	60.249	60.000	0.00	0.00	0.00	3.42
2062	2311	4.326278	CACACATATTCTTTCGTACGCACT	59.674	41.667	11.24	0.00	0.00	4.40
2069	2318	4.690184	TCTTTCGTACGCACTCTGAATA	57.310	40.909	11.24	0.00	0.00	1.75
2100	2349	4.144297	TCCTCTTTCCCATTCACACTTTG	58.856	43.478	0.00	0.00	0.00	2.77
2195	2455	1.475034	GCTGATTGATTCGGTGCCCTA	60.475	52.381	0.00	0.00	32.85	3.53
2216	2476	0.601311	GCTTGCTCGTCCTCACTTGT	60.601	55.000	0.00	0.00	0.00	3.16
2218	2478	2.675317	GCTTGCTCGTCCTCACTTGTAT	60.675	50.000	0.00	0.00	0.00	2.29
2248	2508	2.125147	CTCGATTTGCTGGGGCGA	60.125	61.111	0.00	0.00	42.25	5.54
2286	2547	2.551270	GCGGCTGTTTGTCTCGTG	59.449	61.111	0.00	0.00	0.00	4.35
2289	2550	0.508641	CGGCTGTTTGTCTCGTGAAG	59.491	55.000	0.00	0.00	0.00	3.02
2336	2597	4.400961	GGAGCTGCGCAAGGGAGT	62.401	66.667	13.05	0.00	36.30	3.85
2358	2619	2.646596	CGAGATCGCCGATATGCTG	58.353	57.895	0.00	0.00	0.00	4.41
2359	2620	0.109551	CGAGATCGCCGATATGCTGT	60.110	55.000	0.00	0.00	0.00	4.40
2360	2621	1.667177	CGAGATCGCCGATATGCTGTT	60.667	52.381	0.00	0.00	0.00	3.16
2361	2622	2.414161	CGAGATCGCCGATATGCTGTTA	60.414	50.000	0.00	0.00	0.00	2.41
2362	2623	3.175152	GAGATCGCCGATATGCTGTTAG	58.825	50.000	0.00	0.00	0.00	2.34
2363	2624	2.094494	AGATCGCCGATATGCTGTTAGG	60.094	50.000	0.00	0.00	0.00	2.69
2364	2625	1.324383	TCGCCGATATGCTGTTAGGA	58.676	50.000	0.00	0.00	0.00	2.94
2365	2626	1.893137	TCGCCGATATGCTGTTAGGAT	59.107	47.619	0.00	0.00	0.00	3.24
2366	2627	2.094700	TCGCCGATATGCTGTTAGGATC	60.095	50.000	0.00	0.00	0.00	3.36
2367	2628	2.622436	GCCGATATGCTGTTAGGATCC	58.378	52.381	2.48	2.48	0.00	3.36
2368	2629	2.028112	GCCGATATGCTGTTAGGATCCA	60.028	50.000	15.82	0.00	0.00	3.41
2369	2630	3.854666	CCGATATGCTGTTAGGATCCAG	58.145	50.000	15.82	3.20	0.00	3.86
2379	2640	6.472686	CTGTTAGGATCCAGCTACTAGTTT	57.527	41.667	15.82	0.00	0.00	2.66
2380	2641	6.466885	TGTTAGGATCCAGCTACTAGTTTC	57.533	41.667	15.82	0.00	0.00	2.78
2381	2642	5.955959	TGTTAGGATCCAGCTACTAGTTTCA	59.044	40.000	15.82	0.00	0.00	2.69
2382	2643	6.127423	TGTTAGGATCCAGCTACTAGTTTCAC	60.127	42.308	15.82	0.00	0.00	3.18
2383	2644	4.615513	AGGATCCAGCTACTAGTTTCACT	58.384	43.478	15.82	0.00	0.00	3.41
2384	2645	4.647399	AGGATCCAGCTACTAGTTTCACTC	59.353	45.833	15.82	0.00	0.00	3.51
2385	2646	4.402793	GGATCCAGCTACTAGTTTCACTCA	59.597	45.833	6.95	0.00	0.00	3.41
2386	2647	5.105310	GGATCCAGCTACTAGTTTCACTCAA	60.105	44.000	6.95	0.00	0.00	3.02
2387	2648	6.407525	GGATCCAGCTACTAGTTTCACTCAAT	60.408	42.308	6.95	0.00	0.00	2.57
2388	2649	5.967088	TCCAGCTACTAGTTTCACTCAATC	58.033	41.667	0.00	0.00	0.00	2.67
2389	2650	5.480422	TCCAGCTACTAGTTTCACTCAATCA	59.520	40.000	0.00	0.00	0.00	2.57
2390	2651	5.578727	CCAGCTACTAGTTTCACTCAATCAC	59.421	44.000	0.00	0.00	0.00	3.06
2391	2652	5.578727	CAGCTACTAGTTTCACTCAATCACC	59.421	44.000	0.00	0.00	0.00	4.02
2392	2653	5.246203	AGCTACTAGTTTCACTCAATCACCA	59.754	40.000	0.00	0.00	0.00	4.17
2393	2654	6.070538	AGCTACTAGTTTCACTCAATCACCAT	60.071	38.462	0.00	0.00	0.00	3.55
2394	2655	6.036517	GCTACTAGTTTCACTCAATCACCATG	59.963	42.308	0.00	0.00	0.00	3.66
2395	2656	5.248640	ACTAGTTTCACTCAATCACCATGG	58.751	41.667	11.19	11.19	0.00	3.66
2396	2657	4.104383	AGTTTCACTCAATCACCATGGT	57.896	40.909	13.00	13.00	0.00	3.55
2397	2658	4.473444	AGTTTCACTCAATCACCATGGTT	58.527	39.130	16.84	0.00	0.00	3.67
2398	2659	4.895297	AGTTTCACTCAATCACCATGGTTT	59.105	37.500	16.84	5.12	0.00	3.27
2399	2660	4.852134	TTCACTCAATCACCATGGTTTG	57.148	40.909	16.84	18.38	0.00	2.93

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
4	5	0.179084	TCCTATGCGCCACACTAAGC	60.179	55.000	4.18	0.00	0.00	3.09
81	82	1.460305	GCCTCTGGGAGATAGGGCA	60.460	63.158	0.00	0.00	39.38	5.36
83	84	1.511613	TTTGCCTCTGGGAGATAGGG	58.488	55.000	0.00	0.00	33.58	3.53
167	168	1.264020	GCTTGCATGAAGTGTTGTCGA	59.736	47.619	3.33	0.00	33.73	4.20
205	206	2.346847	CGCGAAGAAGTCTTGATCTTGG	59.653	50.000	0.00	0.00	36.08	3.61
235	236	2.093447	ACTGCCCAAGCTAGTACATCAC	60.093	50.000	0.00	0.00	40.80	3.06
282	283	1.069204	GGCGAGAAGGTATGCTGATCA	59.931	52.381	0.00	0.00	0.00	2.92
358	359	4.722193	CCTTCCAGATGGCACGTT	57.278	55.556	0.00	0.00	34.44	3.99
497	498	4.610945	GTTCCATTCCACAAAGACAACAG	58.389	43.478	0.00	0.00	0.00	3.16
501	502	3.138304	CTCGTTCCATTCCACAAAGACA	58.862	45.455	0.00	0.00	0.00	3.41
504	505	2.744202	CCTCTCGTTCCATTCCACAAAG	59.256	50.000	0.00	0.00	0.00	2.77
831	832	4.100963	GGAGACCACCATTTTTCCTTTTGT	59.899	41.667	0.00	0.00	0.00	2.83
877	879	2.115291	GGAGCGGCCTTCCATGAAC	61.115	63.158	16.10	0.00	34.74	3.18
907	909	1.066858	GTGGTTTCCATCTCTCTCGCA	60.067	52.381	0.00	0.00	35.28	5.10
910	912	2.355209	GGTGGTGGTTTCCATCTCTCTC	60.355	54.545	0.74	0.00	39.81	3.20
974	1202	2.290577	GCAACTCCATTCCCTTCTGACT	60.291	50.000	0.00	0.00	0.00	3.41
992	1220	4.492494	TCTCTAAGAATCATGCCTGCAA	57.508	40.909	0.00	0.00	0.00	4.08
1199	1427	7.287927	CCTGGACTAAATTAGACACAGGAGATA	59.712	40.741	23.94	0.00	41.89	1.98
1262	1498	0.596577	TCGGCTAATAGCAGCTACCG	59.403	55.000	18.79	18.79	44.75	4.02
1331	1567	4.099881	ACCTTAACCACACTGTCGTTCTAA	59.900	41.667	0.00	0.00	0.00	2.10
1339	1575	2.104281	GACCAGACCTTAACCACACTGT	59.896	50.000	0.00	0.00	0.00	3.55
1362	1598	5.297029	GGCACATAAGTTTACAATCTCCTCC	59.703	44.000	0.00	0.00	0.00	4.30
1440	1676	8.308931	CCAATAAACGGTGCTACCTAGAATATA	58.691	37.037	0.00	0.00	35.66	0.86
1441	1677	7.159372	CCAATAAACGGTGCTACCTAGAATAT	58.841	38.462	0.00	0.00	35.66	1.28
1442	1678	6.518493	CCAATAAACGGTGCTACCTAGAATA	58.482	40.000	0.00	0.00	35.66	1.75
1489	1725	5.440610	AGATCGCTAAGACAAATTCCCAAT	58.559	37.500	0.00	0.00	0.00	3.16
1631	1868	5.815222	GGAGGATGTCTCTTTTCTAGAAAGC	59.185	44.000	17.05	8.01	42.10	3.51
1724	1961	5.011090	TGTAGTCCATCTAGTGCAATCAC	57.989	43.478	0.00	0.00	43.44	3.06
1730	1967	3.819337	TCCGTATGTAGTCCATCTAGTGC	59.181	47.826	0.00	0.00	34.86	4.40
1737	1974	6.826668	TCATTTTGATCCGTATGTAGTCCAT	58.173	36.000	0.00	0.00	37.58	3.41
1993	2237	1.740025	GTGAGCCTGTATTTCACCAGC	59.260	52.381	0.00	0.00	36.17	4.85
2028	2272	4.517285	AGAATATGTGTGTTGGCTAGGTG	58.483	43.478	0.00	0.00	0.00	4.00
2036	2285	5.013236	GCGTACGAAAGAATATGTGTGTTG	58.987	41.667	21.65	0.00	0.00	3.33
2100	2349	2.487934	AGAGCAACATGTGACTGTGTC	58.512	47.619	0.00	0.00	0.00	3.67
2173	2422	1.098050	GGCACCGAATCAATCAGCTT	58.902	50.000	0.00	0.00	0.00	3.74
2174	2423	0.749454	GGGCACCGAATCAATCAGCT	60.749	55.000	0.00	0.00	40.86	4.24
2175	2424	1.729881	GGGCACCGAATCAATCAGC	59.270	57.895	0.00	0.00	40.86	4.26
2195	2455	0.394565	AAGTGAGGACGAGCAAGCTT	59.605	50.000	0.00	0.00	0.00	3.74
2265	2525	2.203153	AGACAAACAGCCGCCGTT	60.203	55.556	0.00	0.00	0.00	4.44
2276	2536	0.320374	ATCGCCCTTCACGAGACAAA	59.680	50.000	0.00	0.00	43.74	2.83
2286	2547	3.878667	CCCCCTCCATCGCCCTTC	61.879	72.222	0.00	0.00	0.00	3.46
2289	2550	3.242291	CTACCCCCTCCATCGCCC	61.242	72.222	0.00	0.00	0.00	6.13
2348	2609	3.854666	CTGGATCCTAACAGCATATCGG	58.145	50.000	14.23	0.00	0.00	4.18
2357	2618	5.955959	TGAAACTAGTAGCTGGATCCTAACA	59.044	40.000	14.23	0.00	0.00	2.41
2358	2619	6.274579	GTGAAACTAGTAGCTGGATCCTAAC	58.725	44.000	14.23	5.82	0.00	2.34
2359	2620	6.466885	GTGAAACTAGTAGCTGGATCCTAA	57.533	41.667	14.23	0.00	0.00	2.69
2374	2635	8.870216	CCAAACCATGGTGATTGAGTGAAACTA	61.870	40.741	24.80	0.00	46.99	2.24
2376	2637	4.853924	AACCATGGTGATTGAGTGAAAC	57.146	40.909	20.60	0.00	0.00	2.78
2377	2638	4.039004	CCAAACCATGGTGATTGAGTGAAA	59.961	41.667	24.80	0.00	44.85	2.69
2378	2639	3.573538	CCAAACCATGGTGATTGAGTGAA	59.426	43.478	24.80	0.00	44.85	3.18
2379	2640	3.156293	CCAAACCATGGTGATTGAGTGA	58.844	45.455	24.80	0.00	44.85	3.41
2380	2641	3.581024	CCAAACCATGGTGATTGAGTG	57.419	47.619	24.80	12.37	44.85	3.51

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.