Multiple sequence alignment - TraesCS3B01G221900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G221900 chr3B 100.000 2411 0 0 1 2411 277098755 277101165 0.000000e+00 4453.0
1 TraesCS3B01G221900 chr3B 92.727 550 36 3 1444 1991 291101097 291100550 0.000000e+00 791.0
2 TraesCS3B01G221900 chr3B 89.462 446 30 9 1852 2281 217666074 217665630 4.530000e-152 547.0
3 TraesCS3B01G221900 chr3B 92.032 251 17 3 1444 1693 217666321 217666073 1.370000e-92 350.0
4 TraesCS3B01G221900 chr3B 89.243 251 24 3 1444 1693 233175736 233175984 6.470000e-81 311.0
5 TraesCS3B01G221900 chr3B 94.545 55 3 0 2086 2140 45196549 45196495 4.270000e-13 86.1
6 TraesCS3B01G221900 chrUn 94.934 1441 64 4 1 1440 10643097 10641665 0.000000e+00 2248.0
7 TraesCS3B01G221900 chrUn 94.737 57 1 2 2292 2347 320373417 320373362 1.190000e-13 87.9
8 TraesCS3B01G221900 chrUn 94.737 57 1 2 2292 2347 320376775 320376720 1.190000e-13 87.9
9 TraesCS3B01G221900 chrUn 94.737 57 1 2 2292 2347 367347584 367347639 1.190000e-13 87.9
10 TraesCS3B01G221900 chrUn 92.727 55 4 0 2086 2140 38816501 38816555 1.990000e-11 80.5
11 TraesCS3B01G221900 chrUn 92.727 55 4 0 2086 2140 38823079 38823133 1.990000e-11 80.5
12 TraesCS3B01G221900 chr3A 95.951 1062 36 2 7 1068 112398367 112397313 0.000000e+00 1716.0
13 TraesCS3B01G221900 chr3A 96.021 377 14 1 1064 1440 112384643 112384268 1.580000e-171 612.0
14 TraesCS3B01G221900 chr2B 93.802 968 50 3 481 1440 746260789 746261754 0.000000e+00 1447.0
15 TraesCS3B01G221900 chr2B 93.996 483 20 3 1 483 746250721 746251194 0.000000e+00 723.0
16 TraesCS3B01G221900 chr2B 95.327 107 5 0 1333 1439 797184972 797185078 1.150000e-38 171.0
17 TraesCS3B01G221900 chr2B 91.463 82 7 0 320 401 391982340 391982259 1.960000e-21 113.0
18 TraesCS3B01G221900 chr6D 94.305 878 48 2 563 1440 444497884 444497009 0.000000e+00 1343.0
19 TraesCS3B01G221900 chr6D 100.000 53 0 0 2358 2410 26701381 26701433 5.490000e-17 99.0
20 TraesCS3B01G221900 chr3D 88.794 937 77 19 1444 2357 354746567 354747498 0.000000e+00 1123.0
21 TraesCS3B01G221900 chr7D 93.165 395 25 2 540 933 221001363 221000970 1.610000e-161 579.0
22 TraesCS3B01G221900 chr7D 87.284 464 26 5 918 1381 221000759 221000329 1.290000e-137 499.0
23 TraesCS3B01G221900 chr7D 100.000 53 0 0 2358 2410 240910186 240910134 5.490000e-17 99.0
24 TraesCS3B01G221900 chr7D 96.491 57 0 2 2292 2347 493078963 493078908 2.550000e-15 93.5
25 TraesCS3B01G221900 chr7D 94.737 57 1 2 2292 2347 487292916 487292861 1.190000e-13 87.9
26 TraesCS3B01G221900 chr7D 94.737 57 1 2 2292 2347 487301144 487301089 1.190000e-13 87.9
27 TraesCS3B01G221900 chr7D 94.737 57 1 2 2292 2347 487321179 487321124 1.190000e-13 87.9
28 TraesCS3B01G221900 chr7D 94.737 57 1 2 2292 2347 487325309 487325254 1.190000e-13 87.9
29 TraesCS3B01G221900 chr5D 87.847 288 23 5 2082 2357 143777064 143777351 6.430000e-86 327.0
30 TraesCS3B01G221900 chr5D 94.118 204 10 2 1852 2053 143776865 143777068 2.330000e-80 309.0
31 TraesCS3B01G221900 chr5D 100.000 54 0 0 2357 2410 361220367 361220314 1.530000e-17 100.0
32 TraesCS3B01G221900 chr5D 74.783 230 53 4 238 464 63159784 63159557 5.490000e-17 99.0
33 TraesCS3B01G221900 chr5D 100.000 53 0 0 2358 2410 361214036 361213984 5.490000e-17 99.0
34 TraesCS3B01G221900 chr5D 74.672 229 52 6 238 464 63179421 63179197 1.970000e-16 97.1
35 TraesCS3B01G221900 chr7A 89.286 168 16 2 1691 1856 655447399 655447232 2.430000e-50 209.0
36 TraesCS3B01G221900 chr5B 88.957 163 17 1 1692 1853 228278246 228278084 1.460000e-47 200.0
37 TraesCS3B01G221900 chr5B 98.148 54 1 0 2357 2410 712206096 712206043 7.100000e-16 95.3
38 TraesCS3B01G221900 chr1B 88.024 167 19 1 1689 1854 12711278 12711444 1.890000e-46 196.0
39 TraesCS3B01G221900 chr1B 100.000 55 0 0 2357 2411 136910295 136910349 4.240000e-18 102.0
40 TraesCS3B01G221900 chr1B 81.579 114 19 2 289 401 47925199 47925311 2.550000e-15 93.5
41 TraesCS3B01G221900 chr6B 88.415 164 16 3 1692 1853 668534691 668534853 6.800000e-46 195.0
42 TraesCS3B01G221900 chr2D 87.500 168 20 1 1692 1858 600160980 600160813 2.450000e-45 193.0
43 TraesCS3B01G221900 chr2A 86.517 178 20 4 1689 1862 208749069 208749246 2.450000e-45 193.0
44 TraesCS3B01G221900 chr2A 86.111 180 19 6 1689 1862 279714130 279714309 3.160000e-44 189.0
45 TraesCS3B01G221900 chr5A 83.846 130 20 1 316 445 677181229 677181101 3.260000e-24 122.0
46 TraesCS3B01G221900 chr1A 89.157 83 9 0 319 401 574815035 574814953 1.180000e-18 104.0
47 TraesCS3B01G221900 chr6A 100.000 54 0 0 2357 2410 352508884 352508831 1.530000e-17 100.0
48 TraesCS3B01G221900 chr6A 100.000 53 0 0 2358 2410 352505585 352505533 5.490000e-17 99.0
49 TraesCS3B01G221900 chr4B 100.000 54 0 0 2358 2411 567656318 567656265 1.530000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G221900 chr3B 277098755 277101165 2410 False 4453.0 4453 100.0000 1 2411 1 chr3B.!!$F2 2410
1 TraesCS3B01G221900 chr3B 291100550 291101097 547 True 791.0 791 92.7270 1444 1991 1 chr3B.!!$R2 547
2 TraesCS3B01G221900 chr3B 217665630 217666321 691 True 448.5 547 90.7470 1444 2281 2 chr3B.!!$R3 837
3 TraesCS3B01G221900 chrUn 10641665 10643097 1432 True 2248.0 2248 94.9340 1 1440 1 chrUn.!!$R1 1439
4 TraesCS3B01G221900 chr3A 112397313 112398367 1054 True 1716.0 1716 95.9510 7 1068 1 chr3A.!!$R2 1061
5 TraesCS3B01G221900 chr2B 746260789 746261754 965 False 1447.0 1447 93.8020 481 1440 1 chr2B.!!$F2 959
6 TraesCS3B01G221900 chr6D 444497009 444497884 875 True 1343.0 1343 94.3050 563 1440 1 chr6D.!!$R1 877
7 TraesCS3B01G221900 chr3D 354746567 354747498 931 False 1123.0 1123 88.7940 1444 2357 1 chr3D.!!$F1 913
8 TraesCS3B01G221900 chr7D 221000329 221001363 1034 True 539.0 579 90.2245 540 1381 2 chr7D.!!$R7 841


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
974 1202 1.269448 GTTGATGGCGCCTTTTCTGAA 59.731 47.619 29.7 4.25 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2276 2536 0.320374 ATCGCCCTTCACGAGACAAA 59.68 50.0 0.0 0.0 43.74 2.83 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.737850 CATAGGAGATGGAAGCAAGGTC 58.262 50.000 0.00 0.00 0.00 3.85
81 82 2.460853 CCACGGGGGCCCTCATATT 61.461 63.158 25.09 0.00 0.00 1.28
83 84 2.282462 CGGGGGCCCTCATATTGC 60.282 66.667 25.09 1.36 0.00 3.56
167 168 2.025037 TGCCTGGAATATGAACCTGCTT 60.025 45.455 0.00 0.00 0.00 3.91
205 206 7.031226 TGCAAGCTGATATTGAGGAAATTAC 57.969 36.000 0.00 0.00 0.00 1.89
235 236 2.668212 TTCTTCGCGTTGCCCTGG 60.668 61.111 5.77 0.00 0.00 4.45
282 283 2.304180 CCCAATGGAGTCTTCTCTGTGT 59.696 50.000 0.00 0.00 40.29 3.72
295 296 3.369175 TCTCTGTGTGATCAGCATACCT 58.631 45.455 0.00 0.00 37.78 3.08
394 395 1.833934 CATTATGGGGGTGCCCTGC 60.834 63.158 7.26 0.00 44.66 4.85
395 396 3.086764 ATTATGGGGGTGCCCTGCC 62.087 63.158 7.26 1.47 44.66 4.85
483 484 6.587226 GGAAAACAAAGTTAAACGACACCTTT 59.413 34.615 0.00 0.00 0.00 3.11
497 498 4.308265 GACACCTTTAAGTCTCTGACACC 58.692 47.826 0.46 0.00 34.60 4.16
501 502 4.409247 ACCTTTAAGTCTCTGACACCTGTT 59.591 41.667 0.46 0.00 34.60 3.16
661 662 6.831868 TGGCTACTACATCTACTTGACACATA 59.168 38.462 0.00 0.00 0.00 2.29
877 879 2.817423 GCCGAGGCTCTCAATTGCG 61.817 63.158 13.50 0.00 38.26 4.85
907 909 2.657237 CGCTCCTCCAGGTCGTTT 59.343 61.111 0.00 0.00 36.34 3.60
910 912 1.738099 CTCCTCCAGGTCGTTTGCG 60.738 63.158 0.00 0.00 39.92 4.85
974 1202 1.269448 GTTGATGGCGCCTTTTCTGAA 59.731 47.619 29.70 4.25 0.00 3.02
992 1220 3.251484 TGAAGTCAGAAGGGAATGGAGT 58.749 45.455 0.00 0.00 0.00 3.85
1262 1498 4.035909 GCTAGCTAGAGGTAGAAGTCACAC 59.964 50.000 25.15 0.00 46.05 3.82
1331 1567 0.827507 AAAATTGGACGCACTGGCCT 60.828 50.000 3.32 0.00 36.38 5.19
1339 1575 1.080093 CGCACTGGCCTTAGAACGA 60.080 57.895 3.32 0.00 36.38 3.85
1362 1598 0.682852 TGTGGTTAAGGTCTGGTCCG 59.317 55.000 0.00 0.00 0.00 4.79
1397 1633 1.603802 CTTATGTGCCGCGGATCAAAT 59.396 47.619 33.48 20.96 0.00 2.32
1489 1725 4.355437 CTGTGTTGTTTACCAAATTGCGA 58.645 39.130 0.00 0.00 34.07 5.10
1590 1827 2.783135 CTCAGCTGTACCAATGGTGTT 58.217 47.619 16.41 0.00 36.19 3.32
1646 1883 5.064071 GGATTGTCCGCTTTCTAGAAAAGAG 59.936 44.000 18.25 13.23 35.05 2.85
1706 1943 1.677052 GCTACTACTCCCTCTGTTCCG 59.323 57.143 0.00 0.00 0.00 4.30
1721 1958 7.553044 CCCTCTGTTCCGAAATATAAGTCTTTT 59.447 37.037 0.00 0.00 0.00 2.27
1820 2059 6.542370 CCGTATGTGGTTTCTAATGGAATCTT 59.458 38.462 0.00 0.00 33.53 2.40
2000 2244 6.478512 AAAGGTTAATTTTTCTGCTGGTGA 57.521 33.333 0.00 0.00 0.00 4.02
2028 2272 0.249238 CTCACGCAGATGGACCTAGC 60.249 60.000 0.00 0.00 0.00 3.42
2062 2311 4.326278 CACACATATTCTTTCGTACGCACT 59.674 41.667 11.24 0.00 0.00 4.40
2069 2318 4.690184 TCTTTCGTACGCACTCTGAATA 57.310 40.909 11.24 0.00 0.00 1.75
2100 2349 4.144297 TCCTCTTTCCCATTCACACTTTG 58.856 43.478 0.00 0.00 0.00 2.77
2195 2455 1.475034 GCTGATTGATTCGGTGCCCTA 60.475 52.381 0.00 0.00 32.85 3.53
2216 2476 0.601311 GCTTGCTCGTCCTCACTTGT 60.601 55.000 0.00 0.00 0.00 3.16
2218 2478 2.675317 GCTTGCTCGTCCTCACTTGTAT 60.675 50.000 0.00 0.00 0.00 2.29
2248 2508 2.125147 CTCGATTTGCTGGGGCGA 60.125 61.111 0.00 0.00 42.25 5.54
2286 2547 2.551270 GCGGCTGTTTGTCTCGTG 59.449 61.111 0.00 0.00 0.00 4.35
2289 2550 0.508641 CGGCTGTTTGTCTCGTGAAG 59.491 55.000 0.00 0.00 0.00 3.02
2336 2597 4.400961 GGAGCTGCGCAAGGGAGT 62.401 66.667 13.05 0.00 36.30 3.85
2358 2619 2.646596 CGAGATCGCCGATATGCTG 58.353 57.895 0.00 0.00 0.00 4.41
2359 2620 0.109551 CGAGATCGCCGATATGCTGT 60.110 55.000 0.00 0.00 0.00 4.40
2360 2621 1.667177 CGAGATCGCCGATATGCTGTT 60.667 52.381 0.00 0.00 0.00 3.16
2361 2622 2.414161 CGAGATCGCCGATATGCTGTTA 60.414 50.000 0.00 0.00 0.00 2.41
2362 2623 3.175152 GAGATCGCCGATATGCTGTTAG 58.825 50.000 0.00 0.00 0.00 2.34
2363 2624 2.094494 AGATCGCCGATATGCTGTTAGG 60.094 50.000 0.00 0.00 0.00 2.69
2364 2625 1.324383 TCGCCGATATGCTGTTAGGA 58.676 50.000 0.00 0.00 0.00 2.94
2365 2626 1.893137 TCGCCGATATGCTGTTAGGAT 59.107 47.619 0.00 0.00 0.00 3.24
2366 2627 2.094700 TCGCCGATATGCTGTTAGGATC 60.095 50.000 0.00 0.00 0.00 3.36
2367 2628 2.622436 GCCGATATGCTGTTAGGATCC 58.378 52.381 2.48 2.48 0.00 3.36
2368 2629 2.028112 GCCGATATGCTGTTAGGATCCA 60.028 50.000 15.82 0.00 0.00 3.41
2369 2630 3.854666 CCGATATGCTGTTAGGATCCAG 58.145 50.000 15.82 3.20 0.00 3.86
2379 2640 6.472686 CTGTTAGGATCCAGCTACTAGTTT 57.527 41.667 15.82 0.00 0.00 2.66
2380 2641 6.466885 TGTTAGGATCCAGCTACTAGTTTC 57.533 41.667 15.82 0.00 0.00 2.78
2381 2642 5.955959 TGTTAGGATCCAGCTACTAGTTTCA 59.044 40.000 15.82 0.00 0.00 2.69
2382 2643 6.127423 TGTTAGGATCCAGCTACTAGTTTCAC 60.127 42.308 15.82 0.00 0.00 3.18
2383 2644 4.615513 AGGATCCAGCTACTAGTTTCACT 58.384 43.478 15.82 0.00 0.00 3.41
2384 2645 4.647399 AGGATCCAGCTACTAGTTTCACTC 59.353 45.833 15.82 0.00 0.00 3.51
2385 2646 4.402793 GGATCCAGCTACTAGTTTCACTCA 59.597 45.833 6.95 0.00 0.00 3.41
2386 2647 5.105310 GGATCCAGCTACTAGTTTCACTCAA 60.105 44.000 6.95 0.00 0.00 3.02
2387 2648 6.407525 GGATCCAGCTACTAGTTTCACTCAAT 60.408 42.308 6.95 0.00 0.00 2.57
2388 2649 5.967088 TCCAGCTACTAGTTTCACTCAATC 58.033 41.667 0.00 0.00 0.00 2.67
2389 2650 5.480422 TCCAGCTACTAGTTTCACTCAATCA 59.520 40.000 0.00 0.00 0.00 2.57
2390 2651 5.578727 CCAGCTACTAGTTTCACTCAATCAC 59.421 44.000 0.00 0.00 0.00 3.06
2391 2652 5.578727 CAGCTACTAGTTTCACTCAATCACC 59.421 44.000 0.00 0.00 0.00 4.02
2392 2653 5.246203 AGCTACTAGTTTCACTCAATCACCA 59.754 40.000 0.00 0.00 0.00 4.17
2393 2654 6.070538 AGCTACTAGTTTCACTCAATCACCAT 60.071 38.462 0.00 0.00 0.00 3.55
2394 2655 6.036517 GCTACTAGTTTCACTCAATCACCATG 59.963 42.308 0.00 0.00 0.00 3.66
2395 2656 5.248640 ACTAGTTTCACTCAATCACCATGG 58.751 41.667 11.19 11.19 0.00 3.66
2396 2657 4.104383 AGTTTCACTCAATCACCATGGT 57.896 40.909 13.00 13.00 0.00 3.55
2397 2658 4.473444 AGTTTCACTCAATCACCATGGTT 58.527 39.130 16.84 0.00 0.00 3.67
2398 2659 4.895297 AGTTTCACTCAATCACCATGGTTT 59.105 37.500 16.84 5.12 0.00 3.27
2399 2660 4.852134 TTCACTCAATCACCATGGTTTG 57.148 40.909 16.84 18.38 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.179084 TCCTATGCGCCACACTAAGC 60.179 55.000 4.18 0.00 0.00 3.09
81 82 1.460305 GCCTCTGGGAGATAGGGCA 60.460 63.158 0.00 0.00 39.38 5.36
83 84 1.511613 TTTGCCTCTGGGAGATAGGG 58.488 55.000 0.00 0.00 33.58 3.53
167 168 1.264020 GCTTGCATGAAGTGTTGTCGA 59.736 47.619 3.33 0.00 33.73 4.20
205 206 2.346847 CGCGAAGAAGTCTTGATCTTGG 59.653 50.000 0.00 0.00 36.08 3.61
235 236 2.093447 ACTGCCCAAGCTAGTACATCAC 60.093 50.000 0.00 0.00 40.80 3.06
282 283 1.069204 GGCGAGAAGGTATGCTGATCA 59.931 52.381 0.00 0.00 0.00 2.92
358 359 4.722193 CCTTCCAGATGGCACGTT 57.278 55.556 0.00 0.00 34.44 3.99
497 498 4.610945 GTTCCATTCCACAAAGACAACAG 58.389 43.478 0.00 0.00 0.00 3.16
501 502 3.138304 CTCGTTCCATTCCACAAAGACA 58.862 45.455 0.00 0.00 0.00 3.41
504 505 2.744202 CCTCTCGTTCCATTCCACAAAG 59.256 50.000 0.00 0.00 0.00 2.77
831 832 4.100963 GGAGACCACCATTTTTCCTTTTGT 59.899 41.667 0.00 0.00 0.00 2.83
877 879 2.115291 GGAGCGGCCTTCCATGAAC 61.115 63.158 16.10 0.00 34.74 3.18
907 909 1.066858 GTGGTTTCCATCTCTCTCGCA 60.067 52.381 0.00 0.00 35.28 5.10
910 912 2.355209 GGTGGTGGTTTCCATCTCTCTC 60.355 54.545 0.74 0.00 39.81 3.20
974 1202 2.290577 GCAACTCCATTCCCTTCTGACT 60.291 50.000 0.00 0.00 0.00 3.41
992 1220 4.492494 TCTCTAAGAATCATGCCTGCAA 57.508 40.909 0.00 0.00 0.00 4.08
1199 1427 7.287927 CCTGGACTAAATTAGACACAGGAGATA 59.712 40.741 23.94 0.00 41.89 1.98
1262 1498 0.596577 TCGGCTAATAGCAGCTACCG 59.403 55.000 18.79 18.79 44.75 4.02
1331 1567 4.099881 ACCTTAACCACACTGTCGTTCTAA 59.900 41.667 0.00 0.00 0.00 2.10
1339 1575 2.104281 GACCAGACCTTAACCACACTGT 59.896 50.000 0.00 0.00 0.00 3.55
1362 1598 5.297029 GGCACATAAGTTTACAATCTCCTCC 59.703 44.000 0.00 0.00 0.00 4.30
1440 1676 8.308931 CCAATAAACGGTGCTACCTAGAATATA 58.691 37.037 0.00 0.00 35.66 0.86
1441 1677 7.159372 CCAATAAACGGTGCTACCTAGAATAT 58.841 38.462 0.00 0.00 35.66 1.28
1442 1678 6.518493 CCAATAAACGGTGCTACCTAGAATA 58.482 40.000 0.00 0.00 35.66 1.75
1489 1725 5.440610 AGATCGCTAAGACAAATTCCCAAT 58.559 37.500 0.00 0.00 0.00 3.16
1631 1868 5.815222 GGAGGATGTCTCTTTTCTAGAAAGC 59.185 44.000 17.05 8.01 42.10 3.51
1724 1961 5.011090 TGTAGTCCATCTAGTGCAATCAC 57.989 43.478 0.00 0.00 43.44 3.06
1730 1967 3.819337 TCCGTATGTAGTCCATCTAGTGC 59.181 47.826 0.00 0.00 34.86 4.40
1737 1974 6.826668 TCATTTTGATCCGTATGTAGTCCAT 58.173 36.000 0.00 0.00 37.58 3.41
1993 2237 1.740025 GTGAGCCTGTATTTCACCAGC 59.260 52.381 0.00 0.00 36.17 4.85
2028 2272 4.517285 AGAATATGTGTGTTGGCTAGGTG 58.483 43.478 0.00 0.00 0.00 4.00
2036 2285 5.013236 GCGTACGAAAGAATATGTGTGTTG 58.987 41.667 21.65 0.00 0.00 3.33
2100 2349 2.487934 AGAGCAACATGTGACTGTGTC 58.512 47.619 0.00 0.00 0.00 3.67
2173 2422 1.098050 GGCACCGAATCAATCAGCTT 58.902 50.000 0.00 0.00 0.00 3.74
2174 2423 0.749454 GGGCACCGAATCAATCAGCT 60.749 55.000 0.00 0.00 40.86 4.24
2175 2424 1.729881 GGGCACCGAATCAATCAGC 59.270 57.895 0.00 0.00 40.86 4.26
2195 2455 0.394565 AAGTGAGGACGAGCAAGCTT 59.605 50.000 0.00 0.00 0.00 3.74
2265 2525 2.203153 AGACAAACAGCCGCCGTT 60.203 55.556 0.00 0.00 0.00 4.44
2276 2536 0.320374 ATCGCCCTTCACGAGACAAA 59.680 50.000 0.00 0.00 43.74 2.83
2286 2547 3.878667 CCCCCTCCATCGCCCTTC 61.879 72.222 0.00 0.00 0.00 3.46
2289 2550 3.242291 CTACCCCCTCCATCGCCC 61.242 72.222 0.00 0.00 0.00 6.13
2348 2609 3.854666 CTGGATCCTAACAGCATATCGG 58.145 50.000 14.23 0.00 0.00 4.18
2357 2618 5.955959 TGAAACTAGTAGCTGGATCCTAACA 59.044 40.000 14.23 0.00 0.00 2.41
2358 2619 6.274579 GTGAAACTAGTAGCTGGATCCTAAC 58.725 44.000 14.23 5.82 0.00 2.34
2359 2620 6.466885 GTGAAACTAGTAGCTGGATCCTAA 57.533 41.667 14.23 0.00 0.00 2.69
2374 2635 8.870216 CCAAACCATGGTGATTGAGTGAAACTA 61.870 40.741 24.80 0.00 46.99 2.24
2376 2637 4.853924 AACCATGGTGATTGAGTGAAAC 57.146 40.909 20.60 0.00 0.00 2.78
2377 2638 4.039004 CCAAACCATGGTGATTGAGTGAAA 59.961 41.667 24.80 0.00 44.85 2.69
2378 2639 3.573538 CCAAACCATGGTGATTGAGTGAA 59.426 43.478 24.80 0.00 44.85 3.18
2379 2640 3.156293 CCAAACCATGGTGATTGAGTGA 58.844 45.455 24.80 0.00 44.85 3.41
2380 2641 3.581024 CCAAACCATGGTGATTGAGTG 57.419 47.619 24.80 12.37 44.85 3.51



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.