Multiple sequence alignment - TraesCS3B01G221800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G221800 chr3B 100.000 4409 0 0 3029 7437 277031420 277035828 0.000000e+00 8142.0
1 TraesCS3B01G221800 chr3B 100.000 2686 0 0 1 2686 277028392 277031077 0.000000e+00 4961.0
2 TraesCS3B01G221800 chr3B 87.443 653 45 20 4414 5066 755228340 755228955 0.000000e+00 717.0
3 TraesCS3B01G221800 chr3B 90.659 182 15 2 3790 3971 96859584 96859763 2.680000e-59 241.0
4 TraesCS3B01G221800 chr3B 89.189 74 8 0 1775 1848 753727712 753727639 7.950000e-15 93.5
5 TraesCS3B01G221800 chr3B 79.839 124 20 5 2561 2681 328704706 328704827 1.330000e-12 86.1
6 TraesCS3B01G221800 chr3D 95.950 4198 88 14 3274 7436 191097221 191101371 0.000000e+00 6735.0
7 TraesCS3B01G221800 chr3D 96.809 1755 44 7 939 2684 191095419 191097170 0.000000e+00 2920.0
8 TraesCS3B01G221800 chr3D 96.131 827 21 5 1 817 191094597 191095422 0.000000e+00 1339.0
9 TraesCS3B01G221800 chr3D 95.951 247 9 1 3029 3274 600704999 600705245 4.180000e-107 399.0
10 TraesCS3B01G221800 chr3D 80.645 124 19 5 2561 2681 199131319 199131198 2.860000e-14 91.6
11 TraesCS3B01G221800 chr3D 87.838 74 9 0 1775 1848 565617509 565617436 3.700000e-13 87.9
12 TraesCS3B01G221800 chr3D 90.385 52 5 0 5910 5961 191099793 191099844 1.340000e-07 69.4
13 TraesCS3B01G221800 chr7D 88.804 3001 205 63 3323 6271 520387472 520390393 0.000000e+00 3559.0
14 TraesCS3B01G221800 chr7D 92.967 782 50 3 939 1718 520386412 520387190 0.000000e+00 1134.0
15 TraesCS3B01G221800 chr7D 85.115 477 44 8 1725 2190 43134513 43134973 5.260000e-126 462.0
16 TraesCS3B01G221800 chr7D 95.968 248 8 2 3029 3274 390209297 390209544 1.160000e-107 401.0
17 TraesCS3B01G221800 chr7D 93.798 258 14 2 3029 3285 59868251 59867995 3.250000e-103 387.0
18 TraesCS3B01G221800 chr7D 80.769 286 23 16 6299 6566 520390769 520391040 2.120000e-45 195.0
19 TraesCS3B01G221800 chr7A 89.195 2832 217 55 3637 6440 596686123 596688893 0.000000e+00 3452.0
20 TraesCS3B01G221800 chr7A 91.349 786 59 5 939 1718 596684806 596685588 0.000000e+00 1066.0
21 TraesCS3B01G221800 chr7A 86.094 640 59 20 4414 5048 651433102 651433716 0.000000e+00 662.0
22 TraesCS3B01G221800 chr7A 92.260 323 20 2 3323 3641 596685775 596686096 3.160000e-123 453.0
23 TraesCS3B01G221800 chr7A 96.356 247 8 1 3029 3274 482873859 482874105 8.980000e-109 405.0
24 TraesCS3B01G221800 chr7A 95.951 247 9 1 3029 3274 368481628 368481382 4.180000e-107 399.0
25 TraesCS3B01G221800 chr7A 95.951 247 9 1 3029 3274 599117202 599117448 4.180000e-107 399.0
26 TraesCS3B01G221800 chr7A 82.456 285 27 8 1725 2009 42978898 42979159 2.090000e-55 228.0
27 TraesCS3B01G221800 chr7B 89.759 2656 194 45 3637 6271 553443595 553446193 0.000000e+00 3326.0
28 TraesCS3B01G221800 chr7B 91.013 790 48 10 939 1718 553441644 553442420 0.000000e+00 1044.0
29 TraesCS3B01G221800 chr7B 91.536 319 27 0 3323 3641 553443250 553443568 2.460000e-119 440.0
30 TraesCS3B01G221800 chr7B 84.419 353 31 10 82 430 122291692 122291360 7.200000e-85 326.0
31 TraesCS3B01G221800 chr7B 94.964 139 5 2 805 943 680907430 680907566 4.520000e-52 217.0
32 TraesCS3B01G221800 chr7B 81.338 284 23 16 6299 6566 553446293 553446562 3.520000e-48 204.0
33 TraesCS3B01G221800 chr3A 96.938 1698 30 5 3616 5304 266691431 266693115 0.000000e+00 2828.0
34 TraesCS3B01G221800 chr3A 95.897 1755 47 9 939 2684 266689252 266690990 0.000000e+00 2819.0
35 TraesCS3B01G221800 chr3A 94.643 896 25 6 5910 6782 266693766 266694661 0.000000e+00 1367.0
36 TraesCS3B01G221800 chr3A 95.146 824 30 7 1 817 266688435 266689255 0.000000e+00 1291.0
37 TraesCS3B01G221800 chr3A 98.639 588 8 0 5328 5915 266693230 266693817 0.000000e+00 1042.0
38 TraesCS3B01G221800 chr3A 96.901 355 11 0 3274 3628 266691061 266691415 4.970000e-166 595.0
39 TraesCS3B01G221800 chr3A 85.385 520 41 20 4414 4933 725881201 725881685 2.390000e-139 507.0
40 TraesCS3B01G221800 chr3A 85.381 472 35 18 4533 5004 365962900 365962463 6.800000e-125 459.0
41 TraesCS3B01G221800 chr3A 91.566 332 27 1 7105 7436 266701896 266702226 2.450000e-124 457.0
42 TraesCS3B01G221800 chr3A 97.059 238 5 1 6870 7107 266694655 266694890 4.180000e-107 399.0
43 TraesCS3B01G221800 chr3A 88.704 301 31 3 5325 5625 629690728 629691025 1.520000e-96 364.0
44 TraesCS3B01G221800 chr3A 79.032 124 21 5 2561 2681 310721994 310721873 6.190000e-11 80.5
45 TraesCS3B01G221800 chr2D 84.777 762 83 16 5003 5747 278879476 278880221 0.000000e+00 734.0
46 TraesCS3B01G221800 chr2D 83.965 343 35 14 5749 6091 278880297 278880619 2.010000e-80 311.0
47 TraesCS3B01G221800 chr2D 82.407 324 34 10 79 399 453571733 453572036 2.060000e-65 261.0
48 TraesCS3B01G221800 chr2D 97.692 130 3 0 813 942 357697909 357698038 2.700000e-54 224.0
49 TraesCS3B01G221800 chr2D 92.208 154 9 3 798 949 62293278 62293430 1.630000e-51 215.0
50 TraesCS3B01G221800 chr2D 80.667 150 27 2 1710 1858 330124594 330124742 1.700000e-21 115.0
51 TraesCS3B01G221800 chr2D 91.139 79 6 1 455 533 5765646 5765723 1.020000e-18 106.0
52 TraesCS3B01G221800 chr2D 80.741 135 20 5 1727 1858 316661836 316661705 4.750000e-17 100.0
53 TraesCS3B01G221800 chr2D 87.500 80 10 0 454 533 488235994 488236073 7.950000e-15 93.5
54 TraesCS3B01G221800 chr2D 90.769 65 6 0 454 518 569200942 569200878 3.700000e-13 87.9
55 TraesCS3B01G221800 chr2D 88.889 72 7 1 454 525 590343608 590343538 3.700000e-13 87.9
56 TraesCS3B01G221800 chr2D 87.838 74 9 0 452 525 624184916 624184989 3.700000e-13 87.9
57 TraesCS3B01G221800 chr4B 87.479 591 38 18 4414 5004 462782773 462782219 0.000000e+00 649.0
58 TraesCS3B01G221800 chr4B 95.984 249 7 3 3029 3275 441087724 441087971 1.160000e-107 401.0
59 TraesCS3B01G221800 chr4B 88.716 257 25 4 3903 4158 88847061 88846808 2.010000e-80 311.0
60 TraesCS3B01G221800 chr4B 84.946 93 12 2 1767 1858 484846287 484846196 7.950000e-15 93.5
61 TraesCS3B01G221800 chr5A 85.038 528 50 16 4414 4941 565382849 565382351 1.850000e-140 510.0
62 TraesCS3B01G221800 chr5A 96.970 132 4 0 815 946 569715178 569715309 9.710000e-54 222.0
63 TraesCS3B01G221800 chr5A 96.154 52 2 0 5015 5066 565381987 565381936 1.330000e-12 86.1
64 TraesCS3B01G221800 chr4A 84.956 452 36 16 1738 2178 650844358 650843928 5.330000e-116 429.0
65 TraesCS3B01G221800 chr4A 94.444 144 6 2 808 950 327753449 327753307 3.490000e-53 220.0
66 TraesCS3B01G221800 chr1D 96.787 249 7 1 3029 3276 435924814 435925062 1.490000e-111 414.0
67 TraesCS3B01G221800 chr6A 95.968 248 9 1 3029 3275 230181211 230180964 1.160000e-107 401.0
68 TraesCS3B01G221800 chr6A 81.208 149 21 6 2532 2679 287303596 287303738 6.100000e-21 113.0
69 TraesCS3B01G221800 chr2B 91.071 280 22 3 3790 4069 770585749 770586025 7.040000e-100 375.0
70 TraesCS3B01G221800 chr1B 90.357 280 23 4 3790 4069 345535775 345535500 1.520000e-96 364.0
71 TraesCS3B01G221800 chr1B 85.714 77 9 2 1773 1848 376557072 376556997 6.190000e-11 80.5
72 TraesCS3B01G221800 chr5D 90.079 252 22 3 3908 4158 333076590 333076839 2.590000e-84 324.0
73 TraesCS3B01G221800 chr5D 88.462 260 26 4 3908 4165 492284771 492284514 2.010000e-80 311.0
74 TraesCS3B01G221800 chr5D 97.015 134 3 1 816 949 387621313 387621445 2.700000e-54 224.0
75 TraesCS3B01G221800 chr5D 92.053 151 9 3 800 950 409446504 409446651 7.560000e-50 209.0
76 TraesCS3B01G221800 chr5D 90.141 71 7 0 455 525 340948780 340948850 7.950000e-15 93.5
77 TraesCS3B01G221800 chr6B 83.954 349 31 11 79 423 404123847 404124174 2.010000e-80 311.0
78 TraesCS3B01G221800 chr6B 88.095 252 27 3 3908 4158 535627177 535626928 5.640000e-76 296.0
79 TraesCS3B01G221800 chr6B 81.250 144 18 8 2516 2655 153329672 153329810 2.840000e-19 108.0
80 TraesCS3B01G221800 chr6B 79.605 152 24 6 2532 2682 301609159 301609014 1.320000e-17 102.0
81 TraesCS3B01G221800 chr4D 96.296 135 3 2 808 942 36413367 36413235 3.490000e-53 220.0
82 TraesCS3B01G221800 chr1A 92.258 155 9 3 800 953 458558209 458558057 4.520000e-52 217.0
83 TraesCS3B01G221800 chr5B 95.522 67 3 0 4943 5009 37076707 37076641 2.840000e-19 108.0
84 TraesCS3B01G221800 chr6D 79.739 153 22 8 2532 2682 168221004 168220859 1.320000e-17 102.0
85 TraesCS3B01G221800 chr6D 94.872 39 1 1 3272 3309 293567066 293567028 8.060000e-05 60.2
86 TraesCS3B01G221800 chr2A 90.000 80 7 1 454 533 4218524 4218446 1.320000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G221800 chr3B 277028392 277035828 7436 False 6551.500000 8142 100.000000 1 7437 2 chr3B.!!$F4 7436
1 TraesCS3B01G221800 chr3B 755228340 755228955 615 False 717.000000 717 87.443000 4414 5066 1 chr3B.!!$F3 652
2 TraesCS3B01G221800 chr3D 191094597 191101371 6774 False 2765.850000 6735 94.818750 1 7436 4 chr3D.!!$F2 7435
3 TraesCS3B01G221800 chr7D 520386412 520391040 4628 False 1629.333333 3559 87.513333 939 6566 3 chr7D.!!$F3 5627
4 TraesCS3B01G221800 chr7A 596684806 596688893 4087 False 1657.000000 3452 90.934667 939 6440 3 chr7A.!!$F5 5501
5 TraesCS3B01G221800 chr7A 651433102 651433716 614 False 662.000000 662 86.094000 4414 5048 1 chr7A.!!$F4 634
6 TraesCS3B01G221800 chr7B 553441644 553446562 4918 False 1253.500000 3326 88.411500 939 6566 4 chr7B.!!$F2 5627
7 TraesCS3B01G221800 chr3A 266688435 266694890 6455 False 1477.285714 2828 96.460429 1 7107 7 chr3A.!!$F4 7106
8 TraesCS3B01G221800 chr2D 278879476 278880619 1143 False 522.500000 734 84.371000 5003 6091 2 chr2D.!!$F8 1088
9 TraesCS3B01G221800 chr4B 462782219 462782773 554 True 649.000000 649 87.479000 4414 5004 1 chr4B.!!$R2 590
10 TraesCS3B01G221800 chr5A 565381936 565382849 913 True 298.050000 510 90.596000 4414 5066 2 chr5A.!!$R1 652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
832 843 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28 F
833 844 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44 F
2275 2301 0.043940 AGCATGAAGGAGAGGGGAGT 59.956 55.000 0.00 0.00 0.00 3.85 F
2404 2434 1.064060 GGCTCGCGCAGTTAATTCAAT 59.936 47.619 8.75 0.00 38.10 2.57 F
2684 2847 1.095228 CGACTTTGTGTGCCCTGTGT 61.095 55.000 0.00 0.00 0.00 3.72 F
3262 3425 1.372501 ACTTATTCTGCACCCTGGGT 58.627 50.000 14.05 14.05 35.62 4.51 F
5095 6210 0.918799 TCCTTTGCCCTGCTATCCCA 60.919 55.000 0.00 0.00 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1987 2011 0.249120 TAACACACCCATCGCTGGAG 59.751 55.000 6.92 1.39 46.37 3.86 R
2414 2444 0.544697 AGGGTGGCCGATACGAAAAT 59.455 50.000 0.00 0.00 0.00 1.82 R
3243 3406 1.372501 ACCCAGGGTGCAGAATAAGT 58.627 50.000 11.70 0.00 32.98 2.24 R
3254 3417 4.566837 TCATACTATTCATCACCCAGGGT 58.433 43.478 4.76 4.76 35.62 4.34 R
4601 5396 4.877323 ACTCGAAGAAAAGAACACCAAC 57.123 40.909 0.00 0.00 34.09 3.77 R
5114 6229 2.798847 CTCACCTGCATCATACACATCG 59.201 50.000 0.00 0.00 0.00 3.84 R
6550 8293 1.204941 AGTGCTCATCTGTAACGGTCC 59.795 52.381 0.00 0.00 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 153 1.739371 CGCTTGGACTAAGTACCTGGC 60.739 57.143 0.15 0.00 38.70 4.85
321 323 4.517832 ACGTGGATTTTACTTGGAGGAAAC 59.482 41.667 0.00 0.00 0.00 2.78
324 326 6.460399 CGTGGATTTTACTTGGAGGAAACAAA 60.460 38.462 0.00 0.00 0.00 2.83
353 355 2.906691 TTGTTTGGGCATTGTTCTGG 57.093 45.000 0.00 0.00 0.00 3.86
361 363 2.161609 GGGCATTGTTCTGGTTTAGTCG 59.838 50.000 0.00 0.00 0.00 4.18
385 391 1.530293 GAGTGTGCAGCAAGAACTGAG 59.470 52.381 10.59 0.00 40.25 3.35
494 504 6.663734 AGGATTTTCATAGGAATTTCGGAGT 58.336 36.000 0.00 0.00 31.93 3.85
638 648 7.977789 TGTCAGTAGCTTGTTTGAAATCATA 57.022 32.000 0.00 0.00 0.00 2.15
700 710 7.065803 GCTTTCTAGTTGCTATGTTGGATGTTA 59.934 37.037 0.00 0.00 0.00 2.41
793 804 5.593679 TTGATGACTAGTAGGGTGCTTAC 57.406 43.478 0.00 0.00 0.00 2.34
824 835 7.191593 TGGTTTTCTAAATAGTACTCCCTCC 57.808 40.000 0.00 0.00 0.00 4.30
825 836 6.127253 TGGTTTTCTAAATAGTACTCCCTCCG 60.127 42.308 0.00 0.00 0.00 4.63
826 837 6.127225 GGTTTTCTAAATAGTACTCCCTCCGT 60.127 42.308 0.00 0.00 0.00 4.69
827 838 6.705863 TTTCTAAATAGTACTCCCTCCGTC 57.294 41.667 0.00 0.00 0.00 4.79
828 839 4.723309 TCTAAATAGTACTCCCTCCGTCC 58.277 47.826 0.00 0.00 0.00 4.79
829 840 2.378378 AATAGTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
830 841 1.229131 ATAGTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
831 842 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
832 843 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
833 844 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
834 845 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
835 846 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
836 847 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
837 848 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
838 849 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
839 850 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
840 851 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
841 852 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
842 853 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
843 854 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
844 855 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
845 856 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
846 857 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
847 858 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
848 859 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
849 860 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
850 861 8.487176 CGTCCCAAAATTCTTGTCTTAAATTTG 58.513 33.333 0.00 0.00 33.95 2.32
851 862 9.325198 GTCCCAAAATTCTTGTCTTAAATTTGT 57.675 29.630 0.00 0.00 33.95 2.83
852 863 9.541143 TCCCAAAATTCTTGTCTTAAATTTGTC 57.459 29.630 0.00 0.00 33.95 3.18
853 864 9.546428 CCCAAAATTCTTGTCTTAAATTTGTCT 57.454 29.630 0.00 0.00 33.95 3.41
880 891 9.998106 AAATACGGATGTATCTAGTTATGCTTT 57.002 29.630 0.00 0.00 40.42 3.51
883 894 8.179509 ACGGATGTATCTAGTTATGCTTTAGT 57.820 34.615 0.00 0.00 0.00 2.24
884 895 8.082852 ACGGATGTATCTAGTTATGCTTTAGTG 58.917 37.037 0.00 0.00 0.00 2.74
885 896 8.082852 CGGATGTATCTAGTTATGCTTTAGTGT 58.917 37.037 0.00 0.00 0.00 3.55
886 897 9.765795 GGATGTATCTAGTTATGCTTTAGTGTT 57.234 33.333 0.00 0.00 0.00 3.32
896 907 9.765795 AGTTATGCTTTAGTGTTAGATACATCC 57.234 33.333 0.00 0.00 39.39 3.51
897 908 8.700644 GTTATGCTTTAGTGTTAGATACATCCG 58.299 37.037 0.00 0.00 39.39 4.18
898 909 6.216801 TGCTTTAGTGTTAGATACATCCGT 57.783 37.500 0.00 0.00 39.39 4.69
899 910 7.337480 TGCTTTAGTGTTAGATACATCCGTA 57.663 36.000 0.00 0.00 39.39 4.02
900 911 7.948357 TGCTTTAGTGTTAGATACATCCGTAT 58.052 34.615 0.00 0.00 41.16 3.06
916 927 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
917 928 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
918 929 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
919 930 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
920 931 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
921 932 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
929 940 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
930 941 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
931 942 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
932 943 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
933 944 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
934 945 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
935 946 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
936 947 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
937 948 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
972 983 9.809096 CTACTGTGGTTATATCATAGGCTAATG 57.191 37.037 0.00 0.00 0.00 1.90
996 1007 5.679638 GCATGTTAATTTGCAGGGGAAGTAG 60.680 44.000 7.49 0.00 38.72 2.57
1310 1326 3.561143 GTGAGCTCTCTTCTCCCTCATA 58.439 50.000 16.19 0.00 35.30 2.15
1361 1377 6.485984 CAGTTCTTATTTCAGATGGAGGGATG 59.514 42.308 0.00 0.00 0.00 3.51
1783 1807 6.320518 TCGGGTACTGAATAGGGATTAATCT 58.679 40.000 14.95 0.00 43.00 2.40
1943 1967 1.824230 TGCATAAGTCACATTTGGGCC 59.176 47.619 0.00 0.00 0.00 5.80
1987 2011 1.678101 GCCCATTCAGTTCACTATGGC 59.322 52.381 3.89 0.00 36.94 4.40
2012 2036 4.188462 CAGCGATGGGTGTGTTAAAGATA 58.812 43.478 0.00 0.00 36.90 1.98
2056 2080 2.244769 CTCTCCTCCTTCCTCTTCTCCT 59.755 54.545 0.00 0.00 0.00 3.69
2072 2096 2.348998 CTGCCGCCACCTTCTTCT 59.651 61.111 0.00 0.00 0.00 2.85
2166 2192 0.411452 TCTCCCTGCTTCTCCACTCT 59.589 55.000 0.00 0.00 0.00 3.24
2168 2194 0.115152 TCCCTGCTTCTCCACTCTGA 59.885 55.000 0.00 0.00 0.00 3.27
2178 2204 2.583520 CACTCTGAGGGAGCTGCC 59.416 66.667 18.04 18.04 45.48 4.85
2272 2298 1.211456 AGAAGCATGAAGGAGAGGGG 58.789 55.000 0.00 0.00 0.00 4.79
2275 2301 0.043940 AGCATGAAGGAGAGGGGAGT 59.956 55.000 0.00 0.00 0.00 3.85
2372 2402 3.002042 CAGCCGATTAATCTGCTTGTCAG 59.998 47.826 26.17 14.24 43.44 3.51
2404 2434 1.064060 GGCTCGCGCAGTTAATTCAAT 59.936 47.619 8.75 0.00 38.10 2.57
2414 2444 4.949856 GCAGTTAATTCAATGAGAAGGGGA 59.050 41.667 0.00 0.00 40.15 4.81
2457 2487 3.243771 CGAGTAGGGATTAACTTGCCGAT 60.244 47.826 0.00 0.00 31.29 4.18
2497 2529 6.183360 GGCCGATATTTTGAACACTATGTCAA 60.183 38.462 0.00 0.00 0.00 3.18
2684 2847 1.095228 CGACTTTGTGTGCCCTGTGT 61.095 55.000 0.00 0.00 0.00 3.72
3119 3282 8.947055 ACATAAACTGCAAATTTTCTTGTCTT 57.053 26.923 1.24 0.00 0.00 3.01
3124 3287 8.579682 AACTGCAAATTTTCTTGTCTTATGAC 57.420 30.769 1.85 1.85 43.20 3.06
3125 3288 7.147976 ACTGCAAATTTTCTTGTCTTATGACC 58.852 34.615 6.32 0.00 42.28 4.02
3126 3289 7.014615 ACTGCAAATTTTCTTGTCTTATGACCT 59.985 33.333 6.32 0.00 42.28 3.85
3127 3290 8.402798 TGCAAATTTTCTTGTCTTATGACCTA 57.597 30.769 6.32 0.00 42.28 3.08
3128 3291 9.023962 TGCAAATTTTCTTGTCTTATGACCTAT 57.976 29.630 6.32 0.00 42.28 2.57
3162 3325 8.958175 TTTCTTATGCCAAATTTTACGTAGTG 57.042 30.769 0.00 0.00 45.73 2.74
3163 3326 7.908827 TCTTATGCCAAATTTTACGTAGTGA 57.091 32.000 0.00 0.00 45.73 3.41
3164 3327 8.325421 TCTTATGCCAAATTTTACGTAGTGAA 57.675 30.769 0.00 0.00 45.73 3.18
3165 3328 8.952278 TCTTATGCCAAATTTTACGTAGTGAAT 58.048 29.630 0.00 0.00 45.73 2.57
3166 3329 9.221775 CTTATGCCAAATTTTACGTAGTGAATC 57.778 33.333 0.00 0.00 45.73 2.52
3167 3330 6.561737 TGCCAAATTTTACGTAGTGAATCA 57.438 33.333 0.00 0.00 45.73 2.57
3168 3331 6.971602 TGCCAAATTTTACGTAGTGAATCAA 58.028 32.000 0.00 0.00 45.73 2.57
3169 3332 7.598278 TGCCAAATTTTACGTAGTGAATCAAT 58.402 30.769 0.00 0.00 45.73 2.57
3170 3333 8.085296 TGCCAAATTTTACGTAGTGAATCAATT 58.915 29.630 0.00 0.00 45.73 2.32
3171 3334 8.372521 GCCAAATTTTACGTAGTGAATCAATTG 58.627 33.333 0.00 0.00 45.73 2.32
3172 3335 8.859156 CCAAATTTTACGTAGTGAATCAATTGG 58.141 33.333 5.42 5.88 45.73 3.16
3173 3336 9.619316 CAAATTTTACGTAGTGAATCAATTGGA 57.381 29.630 5.42 0.00 45.73 3.53
3176 3339 9.787532 ATTTTACGTAGTGAATCAATTGGAATG 57.212 29.630 5.42 0.00 45.73 2.67
3177 3340 7.915293 TTACGTAGTGAATCAATTGGAATGT 57.085 32.000 5.42 0.00 45.73 2.71
3178 3341 9.438228 TTTACGTAGTGAATCAATTGGAATGTA 57.562 29.630 5.42 0.00 45.73 2.29
3179 3342 7.915293 ACGTAGTGAATCAATTGGAATGTAA 57.085 32.000 5.42 0.00 42.51 2.41
3180 3343 7.748847 ACGTAGTGAATCAATTGGAATGTAAC 58.251 34.615 5.42 0.00 42.51 2.50
3181 3344 7.606456 ACGTAGTGAATCAATTGGAATGTAACT 59.394 33.333 5.42 3.90 42.51 2.24
3182 3345 9.093970 CGTAGTGAATCAATTGGAATGTAACTA 57.906 33.333 5.42 3.02 0.00 2.24
3196 3359 9.921637 TGGAATGTAACTATTTGAATTCCAAAC 57.078 29.630 15.66 0.00 46.41 2.93
3197 3360 9.072294 GGAATGTAACTATTTGAATTCCAAACG 57.928 33.333 2.27 0.00 46.41 3.60
3198 3361 9.620660 GAATGTAACTATTTGAATTCCAAACGT 57.379 29.630 2.27 0.00 46.41 3.99
3232 3395 9.529325 TTATGAAGTGATTGTAAGATTACCTCG 57.471 33.333 0.48 0.00 32.72 4.63
3233 3396 6.338146 TGAAGTGATTGTAAGATTACCTCGG 58.662 40.000 0.48 0.00 32.72 4.63
3234 3397 5.934402 AGTGATTGTAAGATTACCTCGGT 57.066 39.130 0.48 0.00 32.72 4.69
3235 3398 5.661458 AGTGATTGTAAGATTACCTCGGTG 58.339 41.667 0.00 0.00 32.72 4.94
3236 3399 5.421056 AGTGATTGTAAGATTACCTCGGTGA 59.579 40.000 0.00 0.00 32.72 4.02
3237 3400 6.070995 AGTGATTGTAAGATTACCTCGGTGAA 60.071 38.462 0.00 0.00 32.72 3.18
3238 3401 6.255887 GTGATTGTAAGATTACCTCGGTGAAG 59.744 42.308 0.00 0.00 32.72 3.02
3239 3402 5.988310 TTGTAAGATTACCTCGGTGAAGA 57.012 39.130 0.00 0.00 32.72 2.87
3240 3403 5.988310 TGTAAGATTACCTCGGTGAAGAA 57.012 39.130 0.00 0.00 32.72 2.52
3241 3404 6.540438 TGTAAGATTACCTCGGTGAAGAAT 57.460 37.500 0.00 0.00 32.72 2.40
3242 3405 7.649533 TGTAAGATTACCTCGGTGAAGAATA 57.350 36.000 0.00 0.00 32.72 1.75
3243 3406 8.070034 TGTAAGATTACCTCGGTGAAGAATAA 57.930 34.615 0.00 0.00 32.72 1.40
3244 3407 7.977853 TGTAAGATTACCTCGGTGAAGAATAAC 59.022 37.037 0.00 0.00 32.72 1.89
3245 3408 6.793505 AGATTACCTCGGTGAAGAATAACT 57.206 37.500 0.00 0.00 0.00 2.24
3246 3409 7.184067 AGATTACCTCGGTGAAGAATAACTT 57.816 36.000 0.00 0.00 42.03 2.66
3247 3410 8.302515 AGATTACCTCGGTGAAGAATAACTTA 57.697 34.615 0.00 0.00 39.13 2.24
3248 3411 8.925338 AGATTACCTCGGTGAAGAATAACTTAT 58.075 33.333 0.00 0.00 39.13 1.73
3249 3412 9.543783 GATTACCTCGGTGAAGAATAACTTATT 57.456 33.333 0.00 0.00 39.13 1.40
3250 3413 8.937634 TTACCTCGGTGAAGAATAACTTATTC 57.062 34.615 12.07 12.07 43.77 1.75
3260 3423 5.757850 GAATAACTTATTCTGCACCCTGG 57.242 43.478 12.55 0.00 41.00 4.45
3261 3424 2.514458 AACTTATTCTGCACCCTGGG 57.486 50.000 12.28 12.28 0.00 4.45
3262 3425 1.372501 ACTTATTCTGCACCCTGGGT 58.627 50.000 14.05 14.05 35.62 4.51
3263 3426 7.850027 GAATAACTTATTCTGCACCCTGGGTG 61.850 46.154 36.31 36.31 46.08 4.61
3264 3427 9.907723 GAATAACTTATTCTGCACCCTGGGTGA 62.908 44.444 42.58 27.49 46.15 4.02
3326 4028 3.783943 GGCACATAAACGATTAAACTGCG 59.216 43.478 0.00 0.00 0.00 5.18
3368 4070 7.129109 TGCTAAGTGATTTAGTGTTACTTGC 57.871 36.000 0.00 0.00 40.77 4.01
3575 4281 2.009051 TGCATGATTCACGTCCATCAC 58.991 47.619 8.09 0.00 32.19 3.06
3688 4456 1.986882 AAAAAGTGGAGAGCACCTGG 58.013 50.000 0.00 0.00 0.00 4.45
3727 4495 5.755849 TCTTTCCAGAACTCCACTTCTTTT 58.244 37.500 0.00 0.00 0.00 2.27
3915 4683 8.479280 GTTTGTGAATAAATGTCAATGTCACAC 58.521 33.333 3.24 0.00 42.46 3.82
3916 4684 7.269477 TGTGAATAAATGTCAATGTCACACA 57.731 32.000 0.00 0.00 39.05 3.72
4101 4869 6.464222 TGATACTGTTAACCTTCTTCCTGTG 58.536 40.000 2.48 0.00 0.00 3.66
4130 4898 6.844696 TGAATATTCATCGTCTTTGTAGCC 57.155 37.500 14.23 0.00 31.01 3.93
4150 4921 5.431765 AGCCTAAGTGTCCTGTGAATATTG 58.568 41.667 0.00 0.00 0.00 1.90
4288 5082 7.903481 TGGCCTATCTCTATTATCTTTCCATCT 59.097 37.037 3.32 0.00 0.00 2.90
4662 5457 4.767578 ACACTCAGTATGCATGGATCTT 57.232 40.909 10.16 0.00 34.76 2.40
4898 5711 6.206829 GGATCAAAGCTTGGGGTTACATATAC 59.793 42.308 0.00 0.00 32.43 1.47
5095 6210 0.918799 TCCTTTGCCCTGCTATCCCA 60.919 55.000 0.00 0.00 0.00 4.37
5279 6401 7.581213 TGAGGTAATTTATGGGCTAAATGTG 57.419 36.000 0.00 0.00 39.46 3.21
5631 6846 4.678574 CGATTTGGTGGTGCAATTGATGAT 60.679 41.667 10.34 0.00 0.00 2.45
5883 7221 3.862264 GCTTGCACCTGAAAAGGGATTTC 60.862 47.826 0.00 0.00 46.30 2.17
5895 7233 7.468141 GAAAAGGGATTTCAGGACATAAGTT 57.532 36.000 0.00 0.00 45.58 2.66
5896 7234 7.855784 AAAAGGGATTTCAGGACATAAGTTT 57.144 32.000 0.00 0.00 0.00 2.66
5897 7235 6.840780 AAGGGATTTCAGGACATAAGTTTG 57.159 37.500 0.00 0.00 0.00 2.93
5898 7236 5.892348 AGGGATTTCAGGACATAAGTTTGT 58.108 37.500 0.00 0.00 0.00 2.83
5899 7237 6.314917 AGGGATTTCAGGACATAAGTTTGTT 58.685 36.000 0.00 0.00 0.00 2.83
5900 7238 6.209391 AGGGATTTCAGGACATAAGTTTGTTG 59.791 38.462 0.00 0.00 0.00 3.33
5901 7239 6.389906 GGATTTCAGGACATAAGTTTGTTGG 58.610 40.000 0.00 0.00 0.00 3.77
5902 7240 6.015434 GGATTTCAGGACATAAGTTTGTTGGT 60.015 38.462 0.00 0.00 0.00 3.67
5903 7241 6.783708 TTTCAGGACATAAGTTTGTTGGTT 57.216 33.333 0.00 0.00 0.00 3.67
5904 7242 6.385649 TTCAGGACATAAGTTTGTTGGTTC 57.614 37.500 0.00 0.00 0.00 3.62
5905 7243 5.690865 TCAGGACATAAGTTTGTTGGTTCT 58.309 37.500 0.00 0.00 0.00 3.01
5906 7244 5.530915 TCAGGACATAAGTTTGTTGGTTCTG 59.469 40.000 0.00 0.00 0.00 3.02
5907 7245 5.530915 CAGGACATAAGTTTGTTGGTTCTGA 59.469 40.000 0.00 0.00 0.00 3.27
5908 7246 6.039270 CAGGACATAAGTTTGTTGGTTCTGAA 59.961 38.462 0.00 0.00 0.00 3.02
5909 7247 6.777580 AGGACATAAGTTTGTTGGTTCTGAAT 59.222 34.615 0.00 0.00 0.00 2.57
5910 7248 7.287696 AGGACATAAGTTTGTTGGTTCTGAATT 59.712 33.333 0.00 0.00 0.00 2.17
5911 7249 7.926018 GGACATAAGTTTGTTGGTTCTGAATTT 59.074 33.333 0.00 0.00 0.00 1.82
5912 7250 8.871686 ACATAAGTTTGTTGGTTCTGAATTTC 57.128 30.769 0.00 0.00 0.00 2.17
5913 7251 8.474025 ACATAAGTTTGTTGGTTCTGAATTTCA 58.526 29.630 0.00 0.00 0.00 2.69
5914 7252 8.755018 CATAAGTTTGTTGGTTCTGAATTTCAC 58.245 33.333 0.00 0.00 0.00 3.18
5915 7253 5.660460 AGTTTGTTGGTTCTGAATTTCACC 58.340 37.500 0.00 0.00 0.00 4.02
5916 7254 4.664150 TTGTTGGTTCTGAATTTCACCC 57.336 40.909 0.00 0.00 0.00 4.61
5917 7255 2.621055 TGTTGGTTCTGAATTTCACCCG 59.379 45.455 0.00 0.00 0.00 5.28
5918 7256 2.882137 GTTGGTTCTGAATTTCACCCGA 59.118 45.455 0.00 0.00 0.00 5.14
5919 7257 3.216187 TGGTTCTGAATTTCACCCGAA 57.784 42.857 0.00 0.00 0.00 4.30
5920 7258 3.556999 TGGTTCTGAATTTCACCCGAAA 58.443 40.909 0.00 0.00 44.99 3.46
5921 7259 3.954904 TGGTTCTGAATTTCACCCGAAAA 59.045 39.130 0.00 0.00 44.12 2.29
5922 7260 4.037446 TGGTTCTGAATTTCACCCGAAAAG 59.963 41.667 0.00 0.00 44.12 2.27
5923 7261 4.546570 GTTCTGAATTTCACCCGAAAAGG 58.453 43.478 0.00 0.00 44.12 3.11
5969 7344 8.417176 GTTGTTTCTAAATTTCACTTGCATACG 58.583 33.333 0.00 0.00 0.00 3.06
6493 8231 6.016693 CCAGTTGTGTGTACACCATAAAATCA 60.017 38.462 22.91 6.80 45.88 2.57
6550 8293 0.250727 CTAGGCGAGGAGGGAGAGAG 60.251 65.000 0.00 0.00 0.00 3.20
6593 8340 2.289694 GCTGTATGTCTTGTGGGACTGT 60.290 50.000 0.00 0.00 37.16 3.55
6932 8705 0.107214 GCCCTACCAAGCTGCATACA 60.107 55.000 1.02 0.00 0.00 2.29
7101 8875 6.447084 ACTCCCTCCATTCCTAAATTCAACTA 59.553 38.462 0.00 0.00 0.00 2.24
7107 8881 7.826690 TCCATTCCTAAATTCAACTAGCAAAC 58.173 34.615 0.00 0.00 0.00 2.93
7108 8882 7.669722 TCCATTCCTAAATTCAACTAGCAAACT 59.330 33.333 0.00 0.00 0.00 2.66
7112 8886 6.147164 TCCTAAATTCAACTAGCAAACTGTCG 59.853 38.462 0.00 0.00 0.00 4.35
7150 8924 1.136500 GGAGTACAATCGACCCCACTC 59.864 57.143 9.46 9.46 33.31 3.51
7167 8941 3.264450 CCACTCAACAGGGTTCTATTCCT 59.736 47.826 0.00 0.00 0.00 3.36
7174 8948 7.667557 TCAACAGGGTTCTATTCCTAATATCG 58.332 38.462 0.00 0.00 0.00 2.92
7218 8992 6.248433 AGAGTTGGGACACAATTGTAATGAT 58.752 36.000 11.53 0.00 41.95 2.45
7276 9050 5.447757 TCAACAGGAATCCATTGCATCATA 58.552 37.500 0.61 0.00 0.00 2.15
7279 9053 5.202765 ACAGGAATCCATTGCATCATAACA 58.797 37.500 0.61 0.00 0.00 2.41
7287 9061 5.361571 TCCATTGCATCATAACAAGCTTGAT 59.638 36.000 32.50 23.28 0.00 2.57
7289 9063 6.639686 CCATTGCATCATAACAAGCTTGATAC 59.360 38.462 32.50 12.92 0.00 2.24
7294 9068 6.514048 GCATCATAACAAGCTTGATACCCTTC 60.514 42.308 32.50 11.37 0.00 3.46
7347 9121 6.737720 AGCCAAAAAGAAAGAAAGGAAGAT 57.262 33.333 0.00 0.00 0.00 2.40
7352 9126 7.439356 CCAAAAAGAAAGAAAGGAAGATGGAAC 59.561 37.037 0.00 0.00 0.00 3.62
7390 9164 2.000447 GCTTCACTAGGTTAACTGCCG 59.000 52.381 5.42 0.00 0.00 5.69
7401 9175 1.967762 TAACTGCCGAGTAAACGTCG 58.032 50.000 0.00 0.00 37.17 5.12
7414 9188 1.830279 AACGTCGTGTCTATGAGGGA 58.170 50.000 0.00 0.00 33.18 4.20
7436 9210 5.714806 GGATCCTAAGGTTTGAATGACCAAA 59.285 40.000 3.84 0.00 39.71 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 153 4.997395 CCAAATAGACTCGGGAATATGTGG 59.003 45.833 6.40 6.40 29.02 4.17
222 223 5.929415 TCATCACACGCAGACAAACTAAATA 59.071 36.000 0.00 0.00 0.00 1.40
321 323 6.798315 TGCCCAAACAAAATATCACATTTG 57.202 33.333 0.00 0.00 41.24 2.32
324 326 6.474630 ACAATGCCCAAACAAAATATCACAT 58.525 32.000 0.00 0.00 0.00 3.21
353 355 0.790814 GCACACTCTGGCGACTAAAC 59.209 55.000 0.00 0.00 0.00 2.01
361 363 1.168407 TTCTTGCTGCACACTCTGGC 61.168 55.000 0.00 0.00 0.00 4.85
568 578 0.685097 TCTCTGTACCCCTGCAACAC 59.315 55.000 0.00 0.00 0.00 3.32
572 582 0.909133 TGCATCTCTGTACCCCTGCA 60.909 55.000 0.00 0.00 37.29 4.41
597 607 8.300286 GCTACTGACATAACTTATAGCTGATGA 58.700 37.037 0.00 0.00 32.63 2.92
672 682 4.695455 TCCAACATAGCAACTAGAAAGCAC 59.305 41.667 0.00 0.00 0.00 4.40
700 710 9.388506 GTTGATATGATATGTAAGCATAAGCCT 57.611 33.333 0.00 0.00 43.56 4.58
813 824 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
814 825 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
815 826 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
816 827 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
817 828 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
818 829 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
819 830 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
820 831 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
821 832 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
822 833 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
823 834 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
824 835 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
825 836 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
826 837 9.541143 GACAAATTTAAGACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.39 4.37
827 838 9.546428 AGACAAATTTAAGACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.39 4.12
854 865 9.998106 AAAGCATAACTAGATACATCCGTATTT 57.002 29.630 0.00 0.00 38.48 1.40
857 868 9.293404 ACTAAAGCATAACTAGATACATCCGTA 57.707 33.333 0.00 0.00 0.00 4.02
858 869 8.082852 CACTAAAGCATAACTAGATACATCCGT 58.917 37.037 0.00 0.00 0.00 4.69
859 870 8.082852 ACACTAAAGCATAACTAGATACATCCG 58.917 37.037 0.00 0.00 0.00 4.18
860 871 9.765795 AACACTAAAGCATAACTAGATACATCC 57.234 33.333 0.00 0.00 0.00 3.51
870 881 9.765795 GGATGTATCTAACACTAAAGCATAACT 57.234 33.333 0.00 0.00 42.09 2.24
871 882 8.700644 CGGATGTATCTAACACTAAAGCATAAC 58.299 37.037 0.00 0.00 42.09 1.89
872 883 8.418662 ACGGATGTATCTAACACTAAAGCATAA 58.581 33.333 0.00 0.00 42.09 1.90
873 884 7.948357 ACGGATGTATCTAACACTAAAGCATA 58.052 34.615 0.00 0.00 42.09 3.14
874 885 6.817184 ACGGATGTATCTAACACTAAAGCAT 58.183 36.000 0.00 0.00 42.09 3.79
875 886 6.216801 ACGGATGTATCTAACACTAAAGCA 57.783 37.500 0.00 0.00 42.09 3.91
890 901 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
891 902 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
892 903 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
893 904 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
894 905 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
895 906 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
903 914 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
904 915 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
905 916 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
906 917 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
907 918 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
908 919 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
909 920 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
910 921 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
911 922 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
912 923 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
913 924 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
914 925 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
915 926 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
916 927 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
917 928 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
918 929 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
919 930 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
920 931 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
921 932 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
922 933 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
923 934 1.348696 GTTACTCCCTCCGTCCCAAAA 59.651 52.381 0.00 0.00 0.00 2.44
924 935 0.978907 GTTACTCCCTCCGTCCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
925 936 0.115745 AGTTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
926 937 1.002069 TAGTTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
927 938 1.064091 AGTAGTTACTCCCTCCGTCCC 60.064 57.143 0.00 0.00 0.00 4.46
928 939 2.433662 AGTAGTTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
929 940 3.876320 CAGTAGTAGTTACTCCCTCCGTC 59.124 52.174 0.00 0.00 40.68 4.79
930 941 3.265479 ACAGTAGTAGTTACTCCCTCCGT 59.735 47.826 0.00 0.00 40.68 4.69
931 942 3.626670 CACAGTAGTAGTTACTCCCTCCG 59.373 52.174 0.00 0.00 40.68 4.63
932 943 3.952967 CCACAGTAGTAGTTACTCCCTCC 59.047 52.174 0.00 0.00 40.68 4.30
933 944 4.598022 ACCACAGTAGTAGTTACTCCCTC 58.402 47.826 0.00 0.00 40.68 4.30
934 945 4.671596 ACCACAGTAGTAGTTACTCCCT 57.328 45.455 0.00 0.00 40.68 4.20
935 946 8.703378 ATATAACCACAGTAGTAGTTACTCCC 57.297 38.462 0.00 0.00 40.68 4.30
936 947 9.347240 TGATATAACCACAGTAGTAGTTACTCC 57.653 37.037 0.00 0.00 40.68 3.85
972 983 3.055891 ACTTCCCCTGCAAATTAACATGC 60.056 43.478 7.24 7.24 42.86 4.06
996 1007 0.742990 TTTGACCCGTCGCCATGATC 60.743 55.000 0.00 0.00 0.00 2.92
1068 1079 3.569701 AGTCAAAATCAAGCATCCGTTGT 59.430 39.130 0.00 0.00 0.00 3.32
1310 1326 7.596248 GCACAGTTGTTCAATCAAACAAGATAT 59.404 33.333 2.64 0.00 46.66 1.63
1331 1347 5.645067 TCCATCTGAAATAAGAACTGCACAG 59.355 40.000 0.00 0.00 0.00 3.66
1508 1531 7.254932 GCAGTATTTCCCAGACAGATTATCAAC 60.255 40.741 0.00 0.00 0.00 3.18
1783 1807 3.342719 TCAGTTAAATGGCTGATTCGCA 58.657 40.909 2.65 0.00 36.89 5.10
1875 1899 3.135530 AGAGGGACAAGCAGAATATGGAC 59.864 47.826 0.00 0.00 0.00 4.02
1876 1900 3.387962 AGAGGGACAAGCAGAATATGGA 58.612 45.455 0.00 0.00 0.00 3.41
1917 1941 5.183713 CCCAAATGTGACTTATGCAGAAAGA 59.816 40.000 16.26 0.00 0.00 2.52
1943 1967 1.589993 CCTAGCAGCGGTGATGACG 60.590 63.158 20.69 5.24 0.00 4.35
1987 2011 0.249120 TAACACACCCATCGCTGGAG 59.751 55.000 6.92 1.39 46.37 3.86
2056 2080 1.302511 GAAGAAGAAGGTGGCGGCA 60.303 57.895 7.97 7.97 0.00 5.69
2072 2096 1.958288 CTCTGGGAAGGGGAAGAGAA 58.042 55.000 0.00 0.00 38.77 2.87
2178 2204 1.522355 CAGTGCATCCTACAGCGGG 60.522 63.158 0.00 0.00 0.00 6.13
2297 2323 0.671472 GGTTTGATTGGGCAGCTTGC 60.671 55.000 0.00 0.00 44.08 4.01
2372 2402 0.924090 CGCGAGCCAAGTAATCAGTC 59.076 55.000 0.00 0.00 0.00 3.51
2404 2434 3.181469 CCGATACGAAAATCCCCTTCTCA 60.181 47.826 0.00 0.00 0.00 3.27
2414 2444 0.544697 AGGGTGGCCGATACGAAAAT 59.455 50.000 0.00 0.00 0.00 1.82
2457 2487 3.316071 TCGGCCGACATACAAGTTAAA 57.684 42.857 27.28 0.00 0.00 1.52
3094 3257 8.947055 AAGACAAGAAAATTTGCAGTTTATGT 57.053 26.923 0.00 6.16 0.00 2.29
3098 3261 9.034544 GTCATAAGACAAGAAAATTTGCAGTTT 57.965 29.630 0.00 0.00 44.34 2.66
3099 3262 7.653311 GGTCATAAGACAAGAAAATTTGCAGTT 59.347 33.333 0.00 0.00 46.80 3.16
3100 3263 7.014615 AGGTCATAAGACAAGAAAATTTGCAGT 59.985 33.333 0.00 0.00 46.80 4.40
3101 3264 7.373493 AGGTCATAAGACAAGAAAATTTGCAG 58.627 34.615 0.00 0.00 46.80 4.41
3102 3265 7.288810 AGGTCATAAGACAAGAAAATTTGCA 57.711 32.000 0.00 0.00 46.80 4.08
3136 3299 9.400638 CACTACGTAAAATTTGGCATAAGAAAA 57.599 29.630 0.00 0.00 0.00 2.29
3137 3300 8.784994 TCACTACGTAAAATTTGGCATAAGAAA 58.215 29.630 0.00 0.00 0.00 2.52
3138 3301 8.325421 TCACTACGTAAAATTTGGCATAAGAA 57.675 30.769 0.00 0.00 0.00 2.52
3139 3302 7.908827 TCACTACGTAAAATTTGGCATAAGA 57.091 32.000 0.00 0.00 0.00 2.10
3140 3303 9.221775 GATTCACTACGTAAAATTTGGCATAAG 57.778 33.333 0.00 0.00 0.00 1.73
3141 3304 8.731605 TGATTCACTACGTAAAATTTGGCATAA 58.268 29.630 0.00 0.00 0.00 1.90
3142 3305 8.270080 TGATTCACTACGTAAAATTTGGCATA 57.730 30.769 0.00 0.00 0.00 3.14
3143 3306 7.151999 TGATTCACTACGTAAAATTTGGCAT 57.848 32.000 0.00 0.00 0.00 4.40
3144 3307 6.561737 TGATTCACTACGTAAAATTTGGCA 57.438 33.333 0.00 0.00 0.00 4.92
3145 3308 8.372521 CAATTGATTCACTACGTAAAATTTGGC 58.627 33.333 0.00 0.00 0.00 4.52
3146 3309 8.859156 CCAATTGATTCACTACGTAAAATTTGG 58.141 33.333 7.12 5.06 0.00 3.28
3147 3310 9.619316 TCCAATTGATTCACTACGTAAAATTTG 57.381 29.630 7.12 0.32 0.00 2.32
3150 3313 9.787532 CATTCCAATTGATTCACTACGTAAAAT 57.212 29.630 7.12 0.00 0.00 1.82
3151 3314 8.788806 ACATTCCAATTGATTCACTACGTAAAA 58.211 29.630 7.12 0.00 0.00 1.52
3152 3315 8.330466 ACATTCCAATTGATTCACTACGTAAA 57.670 30.769 7.12 0.00 0.00 2.01
3153 3316 7.915293 ACATTCCAATTGATTCACTACGTAA 57.085 32.000 7.12 0.00 0.00 3.18
3154 3317 8.875803 GTTACATTCCAATTGATTCACTACGTA 58.124 33.333 7.12 0.00 0.00 3.57
3155 3318 7.606456 AGTTACATTCCAATTGATTCACTACGT 59.394 33.333 7.12 0.00 0.00 3.57
3156 3319 7.974675 AGTTACATTCCAATTGATTCACTACG 58.025 34.615 7.12 0.00 0.00 3.51
3170 3333 9.921637 GTTTGGAATTCAAATAGTTACATTCCA 57.078 29.630 17.73 17.73 45.79 3.53
3171 3334 9.072294 CGTTTGGAATTCAAATAGTTACATTCC 57.928 33.333 7.93 14.27 45.79 3.01
3172 3335 9.620660 ACGTTTGGAATTCAAATAGTTACATTC 57.379 29.630 7.93 0.00 45.79 2.67
3206 3369 9.529325 CGAGGTAATCTTACAATCACTTCATAA 57.471 33.333 2.77 0.00 35.37 1.90
3207 3370 8.141909 CCGAGGTAATCTTACAATCACTTCATA 58.858 37.037 2.77 0.00 35.37 2.15
3208 3371 6.986817 CCGAGGTAATCTTACAATCACTTCAT 59.013 38.462 2.77 0.00 35.37 2.57
3209 3372 6.070995 ACCGAGGTAATCTTACAATCACTTCA 60.071 38.462 0.00 0.00 35.37 3.02
3210 3373 6.255887 CACCGAGGTAATCTTACAATCACTTC 59.744 42.308 0.00 0.00 35.37 3.01
3211 3374 6.070995 TCACCGAGGTAATCTTACAATCACTT 60.071 38.462 0.00 0.00 35.37 3.16
3212 3375 5.421056 TCACCGAGGTAATCTTACAATCACT 59.579 40.000 0.00 0.00 35.37 3.41
3213 3376 5.657474 TCACCGAGGTAATCTTACAATCAC 58.343 41.667 0.00 0.00 35.37 3.06
3214 3377 5.925506 TCACCGAGGTAATCTTACAATCA 57.074 39.130 0.00 0.00 35.37 2.57
3215 3378 6.570692 TCTTCACCGAGGTAATCTTACAATC 58.429 40.000 0.00 0.02 35.37 2.67
3216 3379 6.540438 TCTTCACCGAGGTAATCTTACAAT 57.460 37.500 0.00 0.00 35.37 2.71
3217 3380 5.988310 TCTTCACCGAGGTAATCTTACAA 57.012 39.130 0.00 0.00 35.37 2.41
3218 3381 5.988310 TTCTTCACCGAGGTAATCTTACA 57.012 39.130 0.00 0.00 35.37 2.41
3219 3382 8.196103 AGTTATTCTTCACCGAGGTAATCTTAC 58.804 37.037 0.00 0.00 0.00 2.34
3220 3383 8.302515 AGTTATTCTTCACCGAGGTAATCTTA 57.697 34.615 0.00 0.00 0.00 2.10
3221 3384 7.184067 AGTTATTCTTCACCGAGGTAATCTT 57.816 36.000 0.00 0.00 0.00 2.40
3222 3385 6.793505 AGTTATTCTTCACCGAGGTAATCT 57.206 37.500 0.00 0.00 0.00 2.40
3223 3386 9.543783 AATAAGTTATTCTTCACCGAGGTAATC 57.456 33.333 2.10 0.00 37.56 1.75
3224 3387 9.543783 GAATAAGTTATTCTTCACCGAGGTAAT 57.456 33.333 22.93 0.00 41.00 1.89
3225 3388 8.937634 GAATAAGTTATTCTTCACCGAGGTAA 57.062 34.615 22.93 0.00 41.00 2.85
3236 3399 9.397480 ACCCAGGGTGCAGAATAAGTTATTCTT 62.397 40.741 28.07 14.74 42.47 2.52
3237 3400 8.008283 ACCCAGGGTGCAGAATAAGTTATTCT 62.008 42.308 25.91 25.91 44.21 2.40
3238 3401 4.580580 CCCAGGGTGCAGAATAAGTTATTC 59.419 45.833 22.80 22.80 43.77 1.75
3239 3402 4.017499 ACCCAGGGTGCAGAATAAGTTATT 60.017 41.667 11.70 7.87 32.98 1.40
3240 3403 3.527665 ACCCAGGGTGCAGAATAAGTTAT 59.472 43.478 11.70 0.00 32.98 1.89
3241 3404 2.916934 ACCCAGGGTGCAGAATAAGTTA 59.083 45.455 11.70 0.00 32.98 2.24
3242 3405 1.710809 ACCCAGGGTGCAGAATAAGTT 59.289 47.619 11.70 0.00 32.98 2.66
3243 3406 1.372501 ACCCAGGGTGCAGAATAAGT 58.627 50.000 11.70 0.00 32.98 2.24
3254 3417 4.566837 TCATACTATTCATCACCCAGGGT 58.433 43.478 4.76 4.76 35.62 4.34
3255 3418 4.594920 ACTCATACTATTCATCACCCAGGG 59.405 45.833 2.85 2.85 0.00 4.45
3256 3419 5.815233 ACTCATACTATTCATCACCCAGG 57.185 43.478 0.00 0.00 0.00 4.45
3257 3420 6.820335 TCAACTCATACTATTCATCACCCAG 58.180 40.000 0.00 0.00 0.00 4.45
3258 3421 6.806668 TCAACTCATACTATTCATCACCCA 57.193 37.500 0.00 0.00 0.00 4.51
3259 3422 8.562892 CATTTCAACTCATACTATTCATCACCC 58.437 37.037 0.00 0.00 0.00 4.61
3260 3423 9.330063 TCATTTCAACTCATACTATTCATCACC 57.670 33.333 0.00 0.00 0.00 4.02
3265 3428 9.399797 AGCAATCATTTCAACTCATACTATTCA 57.600 29.630 0.00 0.00 0.00 2.57
3532 4238 6.132056 CAGAAATACATGCGATGAAGTAAGC 58.868 40.000 0.00 0.00 0.00 3.09
3603 4309 5.700722 AAGTCGTCATTACAGACACACTA 57.299 39.130 0.00 0.00 38.43 2.74
3688 4456 5.600696 TGGAAAGAGAAACAAATGGAAAGC 58.399 37.500 0.00 0.00 0.00 3.51
3915 4683 9.608617 GAAGCATTATTCATGTGAATCAGTATG 57.391 33.333 11.24 11.44 43.17 2.39
3916 4684 8.790718 GGAAGCATTATTCATGTGAATCAGTAT 58.209 33.333 11.24 0.67 43.17 2.12
4127 4895 5.045578 ACAATATTCACAGGACACTTAGGCT 60.046 40.000 0.00 0.00 0.00 4.58
4150 4921 8.950210 TCCAATCATGTCAGAGAAGAAAAATAC 58.050 33.333 0.00 0.00 0.00 1.89
4601 5396 4.877323 ACTCGAAGAAAAGAACACCAAC 57.123 40.909 0.00 0.00 34.09 3.77
4898 5711 2.958355 TCCTTCCTCAACCTGCAAAAAG 59.042 45.455 0.00 0.00 0.00 2.27
5095 6210 8.677300 ACACATCGCATTTATTATTTTCAGAGT 58.323 29.630 0.00 0.00 0.00 3.24
5114 6229 2.798847 CTCACCTGCATCATACACATCG 59.201 50.000 0.00 0.00 0.00 3.84
5631 6846 0.669318 CTTTGAAGTACCGAGCGGCA 60.669 55.000 9.14 0.00 39.32 5.69
5883 7221 5.530915 TCAGAACCAACAAACTTATGTCCTG 59.469 40.000 0.00 0.00 31.81 3.86
5884 7222 5.690865 TCAGAACCAACAAACTTATGTCCT 58.309 37.500 0.00 0.00 31.81 3.85
5885 7223 6.385649 TTCAGAACCAACAAACTTATGTCC 57.614 37.500 0.00 0.00 31.81 4.02
5886 7224 8.871686 AAATTCAGAACCAACAAACTTATGTC 57.128 30.769 0.00 0.00 31.81 3.06
5887 7225 8.474025 TGAAATTCAGAACCAACAAACTTATGT 58.526 29.630 0.00 0.00 34.24 2.29
5888 7226 8.755018 GTGAAATTCAGAACCAACAAACTTATG 58.245 33.333 0.00 0.00 0.00 1.90
5889 7227 7.926018 GGTGAAATTCAGAACCAACAAACTTAT 59.074 33.333 0.00 0.00 32.69 1.73
5890 7228 7.262048 GGTGAAATTCAGAACCAACAAACTTA 58.738 34.615 0.00 0.00 32.69 2.24
5891 7229 6.106003 GGTGAAATTCAGAACCAACAAACTT 58.894 36.000 0.00 0.00 32.69 2.66
5892 7230 5.395214 GGGTGAAATTCAGAACCAACAAACT 60.395 40.000 0.00 0.00 34.18 2.66
5893 7231 4.808895 GGGTGAAATTCAGAACCAACAAAC 59.191 41.667 0.00 0.00 34.18 2.93
5894 7232 4.440802 CGGGTGAAATTCAGAACCAACAAA 60.441 41.667 0.00 0.00 34.18 2.83
5895 7233 3.067461 CGGGTGAAATTCAGAACCAACAA 59.933 43.478 0.00 0.00 34.18 2.83
5896 7234 2.621055 CGGGTGAAATTCAGAACCAACA 59.379 45.455 0.00 0.00 34.18 3.33
5897 7235 2.882137 TCGGGTGAAATTCAGAACCAAC 59.118 45.455 0.00 0.00 34.18 3.77
5898 7236 3.216187 TCGGGTGAAATTCAGAACCAA 57.784 42.857 0.00 0.00 34.18 3.67
5899 7237 2.940994 TCGGGTGAAATTCAGAACCA 57.059 45.000 0.00 0.00 34.18 3.67
5900 7238 4.546570 CTTTTCGGGTGAAATTCAGAACC 58.453 43.478 0.00 0.00 43.32 3.62
5901 7239 4.546570 CCTTTTCGGGTGAAATTCAGAAC 58.453 43.478 0.00 0.00 43.32 3.01
5902 7240 4.846779 CCTTTTCGGGTGAAATTCAGAA 57.153 40.909 0.00 0.00 43.32 3.02
5915 7253 6.151144 ACTTATGTCTTGAAATCCCTTTTCGG 59.849 38.462 0.00 0.00 45.63 4.30
5916 7254 7.145932 ACTTATGTCTTGAAATCCCTTTTCG 57.854 36.000 0.00 0.00 45.63 3.46
5917 7255 9.196552 CAAACTTATGTCTTGAAATCCCTTTTC 57.803 33.333 0.00 0.00 43.42 2.29
5918 7256 8.704668 ACAAACTTATGTCTTGAAATCCCTTTT 58.295 29.630 9.20 0.00 0.00 2.27
5919 7257 8.250143 ACAAACTTATGTCTTGAAATCCCTTT 57.750 30.769 9.20 0.00 0.00 3.11
5920 7258 7.839680 ACAAACTTATGTCTTGAAATCCCTT 57.160 32.000 9.20 0.00 0.00 3.95
5921 7259 7.287696 ACAACAAACTTATGTCTTGAAATCCCT 59.712 33.333 9.20 0.00 31.81 4.20
5922 7260 7.433680 ACAACAAACTTATGTCTTGAAATCCC 58.566 34.615 9.20 0.00 31.81 3.85
5923 7261 8.871686 AACAACAAACTTATGTCTTGAAATCC 57.128 30.769 9.20 0.00 31.81 3.01
5969 7344 8.268850 TGTCTCTGCTTTTGATCCTAATAAAC 57.731 34.615 0.00 0.00 0.00 2.01
6287 7669 9.649167 AGTAACAATAATGTACAGTAGTTGGTC 57.351 33.333 19.75 12.47 39.40 4.02
6514 8252 4.092091 CGCCTAGTTGACAATCAGAACTTC 59.908 45.833 0.00 0.00 32.27 3.01
6550 8293 1.204941 AGTGCTCATCTGTAACGGTCC 59.795 52.381 0.00 0.00 0.00 4.46
6779 8552 8.958119 ATTACTCGTACCACATAATTTGACAT 57.042 30.769 0.00 0.00 0.00 3.06
6932 8705 8.429641 TCTCAAGTAACATCCAAAAACTACTCT 58.570 33.333 0.00 0.00 0.00 3.24
6996 8769 9.209175 CATGCTATATCTTCAACCTAGGTTAAC 57.791 37.037 26.66 5.14 36.46 2.01
7005 8779 7.749808 CATGTCATCATGCTATATCTTCAACC 58.250 38.462 0.00 0.00 43.66 3.77
7101 8875 7.101054 TGTTCCTAAATATACGACAGTTTGCT 58.899 34.615 0.00 0.00 0.00 3.91
7107 8881 4.680110 CCGCTGTTCCTAAATATACGACAG 59.320 45.833 0.00 0.00 36.88 3.51
7108 8882 4.500205 CCCGCTGTTCCTAAATATACGACA 60.500 45.833 0.00 0.00 0.00 4.35
7112 8886 5.211174 ACTCCCGCTGTTCCTAAATATAC 57.789 43.478 0.00 0.00 0.00 1.47
7150 8924 7.667557 TCGATATTAGGAATAGAACCCTGTTG 58.332 38.462 0.00 0.00 34.11 3.33
7158 8932 6.829229 TCGCCTTCGATATTAGGAATAGAA 57.171 37.500 5.02 0.00 40.21 2.10
7167 8941 5.048224 CCCTCTTACTTCGCCTTCGATATTA 60.048 44.000 0.00 0.00 45.04 0.98
7174 8948 1.192428 TCCCCTCTTACTTCGCCTTC 58.808 55.000 0.00 0.00 0.00 3.46
7244 9018 2.224769 GGATTCCTGTTGAGTTGGGTCA 60.225 50.000 0.00 0.00 0.00 4.02
7246 9020 1.780309 TGGATTCCTGTTGAGTTGGGT 59.220 47.619 3.95 0.00 0.00 4.51
7276 9050 4.396166 CGAATGAAGGGTATCAAGCTTGTT 59.604 41.667 25.19 19.51 32.06 2.83
7279 9053 4.162320 TCTCGAATGAAGGGTATCAAGCTT 59.838 41.667 0.00 0.00 32.06 3.74
7287 9061 5.363868 AGACAATGATCTCGAATGAAGGGTA 59.636 40.000 0.00 0.00 0.00 3.69
7289 9063 4.701765 AGACAATGATCTCGAATGAAGGG 58.298 43.478 0.00 0.00 0.00 3.95
7294 9068 5.064325 TGCTGAAAGACAATGATCTCGAATG 59.936 40.000 0.00 0.00 34.07 2.67
7371 9145 3.056749 ACTCGGCAGTTAACCTAGTGAAG 60.057 47.826 0.88 0.00 32.37 3.02
7390 9164 4.341099 CCTCATAGACACGACGTTTACTC 58.659 47.826 0.00 0.00 0.00 2.59
7401 9175 4.484912 ACCTTAGGATCCCTCATAGACAC 58.515 47.826 8.55 0.00 34.61 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.