Multiple sequence alignment - TraesCS3B01G221200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G221200 chr3B 100.000 6544 0 0 1 6544 274522377 274515834 0.000000e+00 12085.0
1 TraesCS3B01G221200 chr3B 90.856 2220 183 15 989 3203 275345888 275343684 0.000000e+00 2957.0
2 TraesCS3B01G221200 chr3B 91.237 582 46 2 3963 4539 275342821 275342240 0.000000e+00 787.0
3 TraesCS3B01G221200 chr3B 78.799 533 104 8 1142 1668 467046205 467046734 3.750000e-92 350.0
4 TraesCS3B01G221200 chr3B 86.861 137 11 6 5023 5154 275338422 275338288 5.290000e-31 147.0
5 TraesCS3B01G221200 chr3B 93.750 48 1 2 5826 5873 274516509 274516464 3.270000e-08 71.3
6 TraesCS3B01G221200 chr3B 93.750 48 1 2 5869 5914 274516552 274516505 3.270000e-08 71.3
7 TraesCS3B01G221200 chr3D 97.138 5066 105 15 816 5873 189452118 189457151 0.000000e+00 8516.0
8 TraesCS3B01G221200 chr3D 90.722 2231 185 16 978 3203 190253673 190255886 0.000000e+00 2953.0
9 TraesCS3B01G221200 chr3D 92.414 725 52 2 1 722 189446332 189447056 0.000000e+00 1031.0
10 TraesCS3B01G221200 chr3D 93.333 540 36 0 3963 4502 190256728 190257267 0.000000e+00 798.0
11 TraesCS3B01G221200 chr3D 94.030 201 12 0 5869 6069 189457106 189457306 8.240000e-79 305.0
12 TraesCS3B01G221200 chr3D 91.628 215 18 0 5233 5447 190258537 190258751 1.380000e-76 298.0
13 TraesCS3B01G221200 chr3A 98.687 2514 28 2 1021 3529 249860903 249858390 0.000000e+00 4455.0
14 TraesCS3B01G221200 chr3A 90.393 2238 187 18 974 3203 261353843 261351626 0.000000e+00 2916.0
15 TraesCS3B01G221200 chr3A 97.500 1280 28 3 3597 4873 249858390 249857112 0.000000e+00 2183.0
16 TraesCS3B01G221200 chr3A 96.767 959 25 4 4865 5820 249855072 249854117 0.000000e+00 1594.0
17 TraesCS3B01G221200 chr3A 90.694 720 64 2 6 722 249863963 249863244 0.000000e+00 955.0
18 TraesCS3B01G221200 chr3A 91.753 582 43 2 3963 4539 261350750 261350169 0.000000e+00 804.0
19 TraesCS3B01G221200 chr3A 91.346 208 18 0 5240 5447 261348938 261348731 1.070000e-72 285.0
20 TraesCS3B01G221200 chr3A 87.179 156 18 2 6079 6234 18546088 18546241 6.740000e-40 176.0
21 TraesCS3B01G221200 chr3A 86.861 137 11 6 5023 5154 261349643 261349509 5.290000e-31 147.0
22 TraesCS3B01G221200 chr3A 97.531 81 1 1 816 896 249861740 249861661 3.180000e-28 137.0
23 TraesCS3B01G221200 chr5B 72.255 2040 457 83 1160 3134 81807371 81809366 1.250000e-146 531.0
24 TraesCS3B01G221200 chr5B 75.620 484 106 9 3988 4463 81800670 81801149 5.100000e-56 230.0
25 TraesCS3B01G221200 chr5B 75.569 483 107 8 3988 4463 81809480 81809958 1.840000e-55 228.0
26 TraesCS3B01G221200 chr1B 84.081 446 49 8 6086 6510 575638842 575639286 1.700000e-110 411.0
27 TraesCS3B01G221200 chr1B 76.370 584 133 4 1089 1668 313444985 313445567 6.370000e-80 309.0
28 TraesCS3B01G221200 chr1B 87.857 140 16 1 6086 6225 538182180 538182318 5.250000e-36 163.0
29 TraesCS3B01G221200 chr1B 80.176 227 29 11 6086 6300 396587918 396587696 8.790000e-34 156.0
30 TraesCS3B01G221200 chr1B 87.143 70 9 0 4695 4764 510600318 510600387 5.440000e-11 80.5
31 TraesCS3B01G221200 chr1B 100.000 28 0 0 6341 6368 575639148 575639175 1.200000e-02 52.8
32 TraesCS3B01G221200 chr4A 82.635 334 34 15 6086 6400 570483051 570482723 2.320000e-69 274.0
33 TraesCS3B01G221200 chr5A 85.590 229 29 4 6084 6310 111106648 111106422 3.050000e-58 237.0
34 TraesCS3B01G221200 chr4B 84.647 241 23 9 6082 6310 107226575 107226337 1.840000e-55 228.0
35 TraesCS3B01G221200 chr4B 83.700 227 22 8 6086 6300 623099643 623099420 4.000000e-47 200.0
36 TraesCS3B01G221200 chr5D 83.077 260 33 7 6084 6343 557425178 557424930 6.600000e-55 226.0
37 TraesCS3B01G221200 chr2D 84.889 225 32 2 6086 6310 30427818 30428040 6.600000e-55 226.0
38 TraesCS3B01G221200 chr2D 87.805 82 8 2 4708 4789 12626943 12627022 1.940000e-15 95.3
39 TraesCS3B01G221200 chr6D 82.917 240 36 4 6086 6322 427749567 427749330 1.850000e-50 211.0
40 TraesCS3B01G221200 chr6B 84.018 219 20 8 6084 6290 649867698 649867483 5.180000e-46 196.0
41 TraesCS3B01G221200 chr2A 79.151 259 49 3 6086 6341 687137045 687136789 2.430000e-39 174.0
42 TraesCS3B01G221200 chr2A 85.430 151 20 2 4704 4854 177664545 177664693 8.790000e-34 156.0
43 TraesCS3B01G221200 chr2A 87.013 77 7 3 4706 4781 14691882 14691956 4.200000e-12 84.2
44 TraesCS3B01G221200 chr4D 79.263 217 29 9 6086 6290 382333229 382333441 3.180000e-28 137.0
45 TraesCS3B01G221200 chr7A 94.000 50 2 1 4708 4757 545476130 545476082 2.530000e-09 75.0
46 TraesCS3B01G221200 chr2B 90.909 55 2 3 4702 4755 39697933 39697985 3.270000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G221200 chr3B 274515834 274522377 6543 True 12085.000000 12085 100.000000 1 6544 1 chr3B.!!$R1 6543
1 TraesCS3B01G221200 chr3B 275338288 275345888 7600 True 1297.000000 2957 89.651333 989 5154 3 chr3B.!!$R3 4165
2 TraesCS3B01G221200 chr3B 467046205 467046734 529 False 350.000000 350 78.799000 1142 1668 1 chr3B.!!$F1 526
3 TraesCS3B01G221200 chr3D 189452118 189457306 5188 False 4410.500000 8516 95.584000 816 6069 2 chr3D.!!$F2 5253
4 TraesCS3B01G221200 chr3D 190253673 190258751 5078 False 1349.666667 2953 91.894333 978 5447 3 chr3D.!!$F3 4469
5 TraesCS3B01G221200 chr3D 189446332 189447056 724 False 1031.000000 1031 92.414000 1 722 1 chr3D.!!$F1 721
6 TraesCS3B01G221200 chr3A 249854117 249863963 9846 True 1864.800000 4455 96.235800 6 5820 5 chr3A.!!$R1 5814
7 TraesCS3B01G221200 chr3A 261348731 261353843 5112 True 1038.000000 2916 90.088250 974 5447 4 chr3A.!!$R2 4473
8 TraesCS3B01G221200 chr5B 81807371 81809958 2587 False 379.500000 531 73.912000 1160 4463 2 chr5B.!!$F2 3303
9 TraesCS3B01G221200 chr1B 313444985 313445567 582 False 309.000000 309 76.370000 1089 1668 1 chr1B.!!$F1 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
917 2735 0.460284 CGAGAGATTTGGACCCGGTG 60.460 60.000 0.00 0.00 0.00 4.94 F
2856 4975 1.378762 GCTTGTACTGGGGCCTTGA 59.621 57.895 0.84 0.00 0.00 3.02 F
2867 4986 0.034186 GGGCCTTGATGGTCATGACA 60.034 55.000 26.47 13.45 43.75 3.58 F
4094 6456 1.135859 CGCATTCTTCAGTTGACTGGC 60.136 52.381 10.97 4.85 43.91 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2867 4986 1.229359 CCCCAGCTGCAGAATGGAT 59.771 57.895 30.06 0.0 34.26 3.41 R
4764 10738 0.473501 ATGGTGGCATTGGTGGGTTT 60.474 50.000 0.00 0.0 0.00 3.27 R
5456 13991 1.225855 GACACAATTGCGACAGGTCA 58.774 50.000 5.05 0.0 0.00 4.02 R
5860 14400 0.098200 CGAGCGAGACGGATACAACA 59.902 55.000 0.00 0.0 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.102420 AGGCCAAGCTTTGTGGTAAAAC 59.898 45.455 5.01 0.00 38.50 2.43
61 62 7.295322 TGTGGTAAAACATTCCAATGAATCA 57.705 32.000 6.29 0.00 39.20 2.57
165 166 1.774254 TGAGGTCAAGTTGGGACATGT 59.226 47.619 0.00 0.00 39.30 3.21
214 215 2.594303 CGCAGGTGCCTTGTCCAA 60.594 61.111 0.00 0.00 37.91 3.53
239 240 0.809385 TGTCGTAAGCCTCCGAGAAG 59.191 55.000 0.00 0.00 33.10 2.85
247 248 1.045911 GCCTCCGAGAAGACCTCCAT 61.046 60.000 0.00 0.00 38.71 3.41
298 299 1.988467 GCCGTGTCGTACTTTAGGAAC 59.012 52.381 0.00 0.00 0.00 3.62
321 322 6.424683 ACGAAGTTTTTAGATTTTCGACCAC 58.575 36.000 11.29 0.00 37.78 4.16
330 331 0.759959 TTTTCGACCACTGGCCACTA 59.240 50.000 0.00 0.00 0.00 2.74
338 339 0.620556 CACTGGCCACTACCTGGAAT 59.379 55.000 0.00 0.00 43.95 3.01
343 344 2.916934 TGGCCACTACCTGGAATAGTTT 59.083 45.455 0.00 0.00 43.95 2.66
378 379 2.159142 CCCTCTTTGAGCCATTTGATGC 60.159 50.000 0.00 0.00 0.00 3.91
392 395 1.093972 TGATGCGTGAATTGCCGATT 58.906 45.000 0.00 0.00 0.00 3.34
418 421 1.202879 TCCTTTCCAGTGACGCCAATT 60.203 47.619 0.00 0.00 0.00 2.32
420 423 0.871722 TTTCCAGTGACGCCAATTCG 59.128 50.000 0.00 0.00 0.00 3.34
617 621 1.726853 CGTCTAGCCTTGTGAAAGGG 58.273 55.000 6.64 0.00 40.33 3.95
624 628 1.512926 CCTTGTGAAAGGGTCGACAG 58.487 55.000 18.91 2.22 36.29 3.51
653 657 0.745486 CACATTGCCATGCCTCTCGA 60.745 55.000 0.00 0.00 33.05 4.04
662 666 4.214327 GCCTCTCGAAGGGCCTCG 62.214 72.222 6.46 12.86 46.32 4.63
675 679 2.202623 CCTCGTCGAAGCCTTCCG 60.203 66.667 0.00 0.00 0.00 4.30
676 680 2.567049 CTCGTCGAAGCCTTCCGT 59.433 61.111 0.00 0.00 0.00 4.69
689 693 2.669391 GCCTTCCGTGCAAGAATGAAAG 60.669 50.000 0.00 0.00 0.00 2.62
690 694 2.589014 CTTCCGTGCAAGAATGAAAGC 58.411 47.619 0.00 0.00 0.00 3.51
727 731 7.845617 TTTTAACTCGTGCACATTACATTTC 57.154 32.000 18.64 0.00 0.00 2.17
728 732 6.546972 TTAACTCGTGCACATTACATTTCA 57.453 33.333 18.64 0.00 0.00 2.69
730 734 5.627499 ACTCGTGCACATTACATTTCATT 57.373 34.783 18.64 0.00 0.00 2.57
731 735 6.012658 ACTCGTGCACATTACATTTCATTT 57.987 33.333 18.64 0.00 0.00 2.32
732 736 6.086222 ACTCGTGCACATTACATTTCATTTC 58.914 36.000 18.64 0.00 0.00 2.17
734 738 5.855925 TCGTGCACATTACATTTCATTTCAC 59.144 36.000 18.64 0.00 0.00 3.18
735 739 5.858049 CGTGCACATTACATTTCATTTCACT 59.142 36.000 18.64 0.00 0.00 3.41
736 740 6.363088 CGTGCACATTACATTTCATTTCACTT 59.637 34.615 18.64 0.00 0.00 3.16
737 741 7.503991 GTGCACATTACATTTCATTTCACTTG 58.496 34.615 13.17 0.00 0.00 3.16
738 742 6.645827 TGCACATTACATTTCATTTCACTTGG 59.354 34.615 0.00 0.00 0.00 3.61
739 743 6.646240 GCACATTACATTTCATTTCACTTGGT 59.354 34.615 0.00 0.00 0.00 3.67
752 1980 8.919145 TCATTTCACTTGGTTACCAAACTAAAT 58.081 29.630 18.10 17.56 43.44 1.40
753 1981 8.977505 CATTTCACTTGGTTACCAAACTAAATG 58.022 33.333 25.62 25.62 43.44 2.32
757 1985 5.596772 ACTTGGTTACCAAACTAAATGCAGT 59.403 36.000 18.10 5.32 43.44 4.40
758 1986 5.446143 TGGTTACCAAACTAAATGCAGTG 57.554 39.130 0.00 0.00 35.81 3.66
761 1989 5.010213 GGTTACCAAACTAAATGCAGTGGAA 59.990 40.000 0.00 0.00 35.81 3.53
763 1991 4.469657 ACCAAACTAAATGCAGTGGAAGA 58.530 39.130 0.00 0.00 0.00 2.87
764 1992 4.520492 ACCAAACTAAATGCAGTGGAAGAG 59.480 41.667 0.00 0.00 0.00 2.85
766 1994 5.241506 CCAAACTAAATGCAGTGGAAGAGAA 59.758 40.000 0.00 0.00 0.00 2.87
775 2221 3.055094 GCAGTGGAAGAGAATAAGGGTGA 60.055 47.826 0.00 0.00 0.00 4.02
783 2229 6.126911 GGAAGAGAATAAGGGTGAGAATGAGT 60.127 42.308 0.00 0.00 0.00 3.41
784 2230 6.882768 AGAGAATAAGGGTGAGAATGAGTT 57.117 37.500 0.00 0.00 0.00 3.01
785 2231 6.648192 AGAGAATAAGGGTGAGAATGAGTTG 58.352 40.000 0.00 0.00 0.00 3.16
786 2232 5.749462 AGAATAAGGGTGAGAATGAGTTGG 58.251 41.667 0.00 0.00 0.00 3.77
787 2233 2.206576 AAGGGTGAGAATGAGTTGGC 57.793 50.000 0.00 0.00 0.00 4.52
788 2234 1.366319 AGGGTGAGAATGAGTTGGCT 58.634 50.000 0.00 0.00 0.00 4.75
789 2235 1.004044 AGGGTGAGAATGAGTTGGCTG 59.996 52.381 0.00 0.00 0.00 4.85
790 2236 0.807496 GGTGAGAATGAGTTGGCTGC 59.193 55.000 0.00 0.00 0.00 5.25
791 2237 1.612726 GGTGAGAATGAGTTGGCTGCT 60.613 52.381 0.00 0.00 0.00 4.24
792 2238 2.157738 GTGAGAATGAGTTGGCTGCTT 58.842 47.619 0.00 0.00 0.00 3.91
793 2239 2.555757 GTGAGAATGAGTTGGCTGCTTT 59.444 45.455 0.00 0.00 0.00 3.51
794 2240 2.555325 TGAGAATGAGTTGGCTGCTTTG 59.445 45.455 0.00 0.00 0.00 2.77
795 2241 2.816087 GAGAATGAGTTGGCTGCTTTGA 59.184 45.455 0.00 0.00 0.00 2.69
796 2242 2.818432 AGAATGAGTTGGCTGCTTTGAG 59.182 45.455 0.00 0.00 0.00 3.02
797 2243 2.574006 ATGAGTTGGCTGCTTTGAGA 57.426 45.000 0.00 0.00 0.00 3.27
798 2244 2.574006 TGAGTTGGCTGCTTTGAGAT 57.426 45.000 0.00 0.00 0.00 2.75
799 2245 2.867624 TGAGTTGGCTGCTTTGAGATT 58.132 42.857 0.00 0.00 0.00 2.40
800 2246 4.019792 TGAGTTGGCTGCTTTGAGATTA 57.980 40.909 0.00 0.00 0.00 1.75
801 2247 4.592942 TGAGTTGGCTGCTTTGAGATTAT 58.407 39.130 0.00 0.00 0.00 1.28
802 2248 4.397103 TGAGTTGGCTGCTTTGAGATTATG 59.603 41.667 0.00 0.00 0.00 1.90
803 2249 4.338879 AGTTGGCTGCTTTGAGATTATGT 58.661 39.130 0.00 0.00 0.00 2.29
804 2250 5.500234 AGTTGGCTGCTTTGAGATTATGTA 58.500 37.500 0.00 0.00 0.00 2.29
805 2251 5.945784 AGTTGGCTGCTTTGAGATTATGTAA 59.054 36.000 0.00 0.00 0.00 2.41
806 2252 6.434028 AGTTGGCTGCTTTGAGATTATGTAAA 59.566 34.615 0.00 0.00 0.00 2.01
807 2253 6.832520 TGGCTGCTTTGAGATTATGTAAAA 57.167 33.333 0.00 0.00 0.00 1.52
808 2254 7.225784 TGGCTGCTTTGAGATTATGTAAAAA 57.774 32.000 0.00 0.00 0.00 1.94
862 2309 3.798878 CACGTGTTATGCATCCAGACTAG 59.201 47.826 7.58 0.00 0.00 2.57
863 2310 3.181475 ACGTGTTATGCATCCAGACTAGG 60.181 47.826 0.19 0.00 0.00 3.02
896 2343 1.214175 TGCATCCGGATGGGTTAACAT 59.786 47.619 38.49 3.61 39.16 2.71
917 2735 0.460284 CGAGAGATTTGGACCCGGTG 60.460 60.000 0.00 0.00 0.00 4.94
937 2755 6.594159 CCGGTGTCATAGAACTATTTTTCAGT 59.406 38.462 0.00 0.00 0.00 3.41
971 2789 2.358737 CGCCCCTGTCAACCACTC 60.359 66.667 0.00 0.00 0.00 3.51
998 2816 4.880426 TCCCGCTCCCAGATCCCC 62.880 72.222 0.00 0.00 0.00 4.81
1223 3303 1.588239 TCATGCTCCTCCTCAATGGT 58.412 50.000 0.00 0.00 37.07 3.55
1796 3897 3.777925 CGCTCTCCAAACCGTGCG 61.778 66.667 0.00 0.00 36.92 5.34
2856 4975 1.378762 GCTTGTACTGGGGCCTTGA 59.621 57.895 0.84 0.00 0.00 3.02
2867 4986 0.034186 GGGCCTTGATGGTCATGACA 60.034 55.000 26.47 13.45 43.75 3.58
3528 5705 3.959293 TCCACTAGAATCTCGTGGTGTA 58.041 45.455 26.56 10.75 44.44 2.90
3765 5950 6.128138 AGTTTGTATCCTTGGCTAGAAAGT 57.872 37.500 0.00 0.00 0.00 2.66
4052 6414 4.010349 CTGGTGGATTCAGTAAGGAAACC 58.990 47.826 0.00 0.00 39.44 3.27
4094 6456 1.135859 CGCATTCTTCAGTTGACTGGC 60.136 52.381 10.97 4.85 43.91 4.85
4608 10578 6.749923 AAAAGTATGCTCAATCAGACTTCC 57.250 37.500 4.56 0.00 44.73 3.46
4632 10602 7.505585 TCCTACTTTTCAGTTTGGTTCATGATT 59.494 33.333 0.00 0.00 34.06 2.57
4638 10608 7.536895 TTCAGTTTGGTTCATGATTTTTGTG 57.463 32.000 0.00 0.00 0.00 3.33
4830 10804 2.034104 ACACCATGCATGCTACTCAG 57.966 50.000 21.69 8.18 0.00 3.35
5447 13982 1.705186 AGCAGAAGGGAGGCAGTTAAA 59.295 47.619 0.00 0.00 0.00 1.52
5470 14005 0.249699 TGACGTGACCTGTCGCAATT 60.250 50.000 11.05 0.00 39.92 2.32
5471 14006 0.163788 GACGTGACCTGTCGCAATTG 59.836 55.000 11.05 0.00 39.92 2.32
5509 14046 5.001232 TCCACTTTGCCAGTTTCATACTAC 58.999 41.667 0.00 0.00 34.56 2.73
5645 14184 2.030451 TCCTCGAGAGATGCAATGATCG 60.030 50.000 15.71 8.04 40.84 3.69
5648 14187 2.133553 CGAGAGATGCAATGATCGCTT 58.866 47.619 0.00 0.00 33.18 4.68
5800 14340 3.118542 GTGCTTTTGTCTTTCAGCCTTG 58.881 45.455 0.00 0.00 0.00 3.61
5811 14351 3.423539 TTCAGCCTTGCATGTTCTAGT 57.576 42.857 0.00 0.00 0.00 2.57
5813 14353 2.038952 TCAGCCTTGCATGTTCTAGTGT 59.961 45.455 0.00 0.00 0.00 3.55
5825 14365 1.873698 TCTAGTGTTGCCGTGTTTCC 58.126 50.000 0.00 0.00 0.00 3.13
5826 14366 0.872388 CTAGTGTTGCCGTGTTTCCC 59.128 55.000 0.00 0.00 0.00 3.97
5827 14367 0.881159 TAGTGTTGCCGTGTTTCCCG 60.881 55.000 0.00 0.00 0.00 5.14
5828 14368 2.124653 TGTTGCCGTGTTTCCCGT 60.125 55.556 0.00 0.00 0.00 5.28
5829 14369 2.181521 TGTTGCCGTGTTTCCCGTC 61.182 57.895 0.00 0.00 0.00 4.79
5830 14370 1.890510 GTTGCCGTGTTTCCCGTCT 60.891 57.895 0.00 0.00 0.00 4.18
5831 14371 1.595929 TTGCCGTGTTTCCCGTCTC 60.596 57.895 0.00 0.00 0.00 3.36
5832 14372 2.029964 GCCGTGTTTCCCGTCTCA 59.970 61.111 0.00 0.00 0.00 3.27
5833 14373 2.027625 GCCGTGTTTCCCGTCTCAG 61.028 63.158 0.00 0.00 0.00 3.35
5834 14374 2.027625 CCGTGTTTCCCGTCTCAGC 61.028 63.158 0.00 0.00 0.00 4.26
5835 14375 1.006102 CGTGTTTCCCGTCTCAGCT 60.006 57.895 0.00 0.00 0.00 4.24
5836 14376 0.242825 CGTGTTTCCCGTCTCAGCTA 59.757 55.000 0.00 0.00 0.00 3.32
5837 14377 1.732732 CGTGTTTCCCGTCTCAGCTAG 60.733 57.143 0.00 0.00 0.00 3.42
5838 14378 1.272769 GTGTTTCCCGTCTCAGCTAGT 59.727 52.381 0.00 0.00 0.00 2.57
5839 14379 1.968493 TGTTTCCCGTCTCAGCTAGTT 59.032 47.619 0.00 0.00 0.00 2.24
5840 14380 3.057033 GTGTTTCCCGTCTCAGCTAGTTA 60.057 47.826 0.00 0.00 0.00 2.24
5841 14381 3.057033 TGTTTCCCGTCTCAGCTAGTTAC 60.057 47.826 0.00 0.00 0.00 2.50
5842 14382 2.803030 TCCCGTCTCAGCTAGTTACT 57.197 50.000 0.00 0.00 0.00 2.24
5843 14383 3.083122 TCCCGTCTCAGCTAGTTACTT 57.917 47.619 0.00 0.00 0.00 2.24
5844 14384 3.428532 TCCCGTCTCAGCTAGTTACTTT 58.571 45.455 0.00 0.00 0.00 2.66
5845 14385 3.830755 TCCCGTCTCAGCTAGTTACTTTT 59.169 43.478 0.00 0.00 0.00 2.27
5846 14386 4.082354 TCCCGTCTCAGCTAGTTACTTTTC 60.082 45.833 0.00 0.00 0.00 2.29
5847 14387 4.082136 CCCGTCTCAGCTAGTTACTTTTCT 60.082 45.833 0.00 0.00 0.00 2.52
5848 14388 5.471257 CCGTCTCAGCTAGTTACTTTTCTT 58.529 41.667 0.00 0.00 0.00 2.52
5849 14389 5.927115 CCGTCTCAGCTAGTTACTTTTCTTT 59.073 40.000 0.00 0.00 0.00 2.52
5850 14390 6.089685 CCGTCTCAGCTAGTTACTTTTCTTTC 59.910 42.308 0.00 0.00 0.00 2.62
5851 14391 6.641314 CGTCTCAGCTAGTTACTTTTCTTTCA 59.359 38.462 0.00 0.00 0.00 2.69
5852 14392 7.148885 CGTCTCAGCTAGTTACTTTTCTTTCAG 60.149 40.741 0.00 0.00 0.00 3.02
5853 14393 7.654116 GTCTCAGCTAGTTACTTTTCTTTCAGT 59.346 37.037 0.00 0.00 0.00 3.41
5854 14394 7.653713 TCTCAGCTAGTTACTTTTCTTTCAGTG 59.346 37.037 0.00 0.00 0.00 3.66
5855 14395 7.272978 TCAGCTAGTTACTTTTCTTTCAGTGT 58.727 34.615 0.00 0.00 0.00 3.55
5856 14396 7.769044 TCAGCTAGTTACTTTTCTTTCAGTGTT 59.231 33.333 0.00 0.00 0.00 3.32
5857 14397 9.042008 CAGCTAGTTACTTTTCTTTCAGTGTTA 57.958 33.333 0.00 0.00 0.00 2.41
5858 14398 9.043079 AGCTAGTTACTTTTCTTTCAGTGTTAC 57.957 33.333 0.00 0.00 0.00 2.50
5859 14399 8.823818 GCTAGTTACTTTTCTTTCAGTGTTACA 58.176 33.333 0.00 0.00 0.00 2.41
5862 14402 9.174166 AGTTACTTTTCTTTCAGTGTTACATGT 57.826 29.630 2.69 2.69 0.00 3.21
5863 14403 9.783256 GTTACTTTTCTTTCAGTGTTACATGTT 57.217 29.630 2.30 0.00 0.00 2.71
5864 14404 9.781834 TTACTTTTCTTTCAGTGTTACATGTTG 57.218 29.630 2.30 0.00 0.00 3.33
5865 14405 7.826690 ACTTTTCTTTCAGTGTTACATGTTGT 58.173 30.769 2.30 0.00 0.00 3.32
5866 14406 8.952278 ACTTTTCTTTCAGTGTTACATGTTGTA 58.048 29.630 2.30 0.00 0.00 2.41
5867 14407 9.950680 CTTTTCTTTCAGTGTTACATGTTGTAT 57.049 29.630 2.30 0.00 32.20 2.29
5897 14437 4.025979 CGCTCGTTACTTTTCTTTCAGTGT 60.026 41.667 0.00 0.00 0.00 3.55
5931 14471 1.537202 GTCCTTTCGCTTGCTGTCAAT 59.463 47.619 0.00 0.00 0.00 2.57
5947 14487 6.712095 TGCTGTCAATTTCTGTGTTATCTCTT 59.288 34.615 0.00 0.00 0.00 2.85
5982 14522 9.801873 CCAAACAATTTCTATTACCGATTGATT 57.198 29.630 0.00 0.00 33.24 2.57
5984 14524 8.856490 AACAATTTCTATTACCGATTGATTGC 57.144 30.769 0.00 0.00 33.24 3.56
6022 14562 6.666678 AGGATTCCAAATGTCATGACACTAT 58.333 36.000 30.09 16.56 45.05 2.12
6030 14570 6.530913 AATGTCATGACACTATATGCGTTC 57.469 37.500 30.09 0.00 45.05 3.95
6058 14598 3.440127 TCCTGGAAATAAAAGGCCCTTG 58.560 45.455 0.00 0.00 0.00 3.61
6065 14605 6.129874 GGAAATAAAAGGCCCTTGATAGTCT 58.870 40.000 0.00 0.00 0.00 3.24
6069 14609 1.207791 AGGCCCTTGATAGTCTGGTG 58.792 55.000 0.00 0.00 0.00 4.17
6070 14610 0.464554 GGCCCTTGATAGTCTGGTGC 60.465 60.000 0.00 0.00 0.00 5.01
6071 14611 0.464554 GCCCTTGATAGTCTGGTGCC 60.465 60.000 0.00 0.00 0.00 5.01
6072 14612 0.911769 CCCTTGATAGTCTGGTGCCA 59.088 55.000 0.00 0.00 0.00 4.92
6073 14613 1.134280 CCCTTGATAGTCTGGTGCCAG 60.134 57.143 11.82 11.82 44.86 4.85
6074 14614 1.556911 CCTTGATAGTCTGGTGCCAGT 59.443 52.381 16.85 2.71 43.96 4.00
6075 14615 2.766263 CCTTGATAGTCTGGTGCCAGTA 59.234 50.000 16.85 4.81 43.96 2.74
6076 14616 3.430929 CCTTGATAGTCTGGTGCCAGTAC 60.431 52.174 16.85 13.31 43.96 2.73
6077 14617 3.101643 TGATAGTCTGGTGCCAGTACT 57.898 47.619 16.85 18.40 43.96 2.73
6078 14618 3.024547 TGATAGTCTGGTGCCAGTACTC 58.975 50.000 16.85 10.57 43.96 2.59
6079 14619 2.901338 TAGTCTGGTGCCAGTACTCT 57.099 50.000 16.85 12.99 43.96 3.24
6080 14620 1.551452 AGTCTGGTGCCAGTACTCTC 58.449 55.000 16.85 4.01 43.96 3.20
6081 14621 1.076350 AGTCTGGTGCCAGTACTCTCT 59.924 52.381 16.85 5.83 43.96 3.10
6082 14622 1.203523 GTCTGGTGCCAGTACTCTCTG 59.796 57.143 16.85 0.00 43.96 3.35
6083 14623 1.203063 TCTGGTGCCAGTACTCTCTGT 60.203 52.381 16.85 0.00 43.96 3.41
6084 14624 2.041216 TCTGGTGCCAGTACTCTCTGTA 59.959 50.000 16.85 0.00 43.96 2.74
6085 14625 2.826128 CTGGTGCCAGTACTCTCTGTAA 59.174 50.000 9.96 0.00 39.10 2.41
6086 14626 2.826128 TGGTGCCAGTACTCTCTGTAAG 59.174 50.000 0.00 0.00 34.02 2.34
6087 14627 2.166664 GGTGCCAGTACTCTCTGTAAGG 59.833 54.545 0.00 0.00 34.02 2.69
6088 14628 1.825474 TGCCAGTACTCTCTGTAAGGC 59.175 52.381 9.13 9.13 46.33 4.35
6089 14629 1.137282 GCCAGTACTCTCTGTAAGGCC 59.863 57.143 0.00 0.00 43.27 5.19
6090 14630 2.457598 CCAGTACTCTCTGTAAGGCCA 58.542 52.381 5.01 0.00 34.02 5.36
6091 14631 2.832129 CCAGTACTCTCTGTAAGGCCAA 59.168 50.000 5.01 0.00 34.02 4.52
6092 14632 3.368531 CCAGTACTCTCTGTAAGGCCAAC 60.369 52.174 5.01 2.84 34.02 3.77
6093 14633 3.511934 CAGTACTCTCTGTAAGGCCAACT 59.488 47.826 5.01 0.00 32.25 3.16
6094 14634 3.764972 AGTACTCTCTGTAAGGCCAACTC 59.235 47.826 5.01 0.00 32.25 3.01
6095 14635 1.903183 ACTCTCTGTAAGGCCAACTCC 59.097 52.381 5.01 0.00 0.00 3.85
6096 14636 1.902508 CTCTCTGTAAGGCCAACTCCA 59.097 52.381 5.01 0.00 0.00 3.86
6097 14637 1.623811 TCTCTGTAAGGCCAACTCCAC 59.376 52.381 5.01 0.00 0.00 4.02
6098 14638 1.625818 CTCTGTAAGGCCAACTCCACT 59.374 52.381 5.01 0.00 0.00 4.00
6099 14639 1.347707 TCTGTAAGGCCAACTCCACTG 59.652 52.381 5.01 0.00 0.00 3.66
6100 14640 0.250727 TGTAAGGCCAACTCCACTGC 60.251 55.000 5.01 0.00 0.00 4.40
6101 14641 0.250727 GTAAGGCCAACTCCACTGCA 60.251 55.000 5.01 0.00 0.00 4.41
6102 14642 0.476338 TAAGGCCAACTCCACTGCAA 59.524 50.000 5.01 0.00 0.00 4.08
6103 14643 0.825010 AAGGCCAACTCCACTGCAAG 60.825 55.000 5.01 0.00 42.29 4.01
6104 14644 1.228245 GGCCAACTCCACTGCAAGA 60.228 57.895 0.00 0.00 37.43 3.02
6105 14645 1.518903 GGCCAACTCCACTGCAAGAC 61.519 60.000 0.00 0.00 37.43 3.01
6106 14646 1.518903 GCCAACTCCACTGCAAGACC 61.519 60.000 0.00 0.00 37.43 3.85
6107 14647 0.890996 CCAACTCCACTGCAAGACCC 60.891 60.000 0.00 0.00 37.43 4.46
6108 14648 0.890996 CAACTCCACTGCAAGACCCC 60.891 60.000 0.00 0.00 37.43 4.95
6109 14649 1.352622 AACTCCACTGCAAGACCCCA 61.353 55.000 0.00 0.00 37.43 4.96
6110 14650 1.352622 ACTCCACTGCAAGACCCCAA 61.353 55.000 0.00 0.00 37.43 4.12
6111 14651 0.178992 CTCCACTGCAAGACCCCAAA 60.179 55.000 0.00 0.00 37.43 3.28
6112 14652 0.467290 TCCACTGCAAGACCCCAAAC 60.467 55.000 0.00 0.00 37.43 2.93
6113 14653 1.654220 CACTGCAAGACCCCAAACG 59.346 57.895 0.00 0.00 37.43 3.60
6114 14654 1.528309 ACTGCAAGACCCCAAACGG 60.528 57.895 0.00 0.00 37.43 4.44
6115 14655 1.228124 CTGCAAGACCCCAAACGGA 60.228 57.895 0.00 0.00 34.07 4.69
6116 14656 1.515521 CTGCAAGACCCCAAACGGAC 61.516 60.000 0.00 0.00 34.07 4.79
6117 14657 2.613506 GCAAGACCCCAAACGGACG 61.614 63.158 0.00 0.00 0.00 4.79
6118 14658 1.227734 CAAGACCCCAAACGGACGT 60.228 57.895 0.00 0.00 0.00 4.34
6119 14659 1.070275 AAGACCCCAAACGGACGTC 59.930 57.895 7.13 7.13 0.00 4.34
6120 14660 2.357881 GACCCCAAACGGACGTCC 60.358 66.667 25.28 25.28 0.00 4.79
6130 14670 3.237290 GGACGTCCGTTTTGTCCG 58.763 61.111 20.85 0.00 42.42 4.79
6131 14671 2.312436 GGACGTCCGTTTTGTCCGG 61.312 63.158 20.85 0.00 42.42 5.14
6140 14680 2.657184 CGTTTTGTCCGGATTTTGTCC 58.343 47.619 7.81 0.00 44.10 4.02
6149 14689 1.334160 GGATTTTGTCCGTTTGGGGT 58.666 50.000 0.00 0.00 37.23 4.95
6150 14690 1.000394 GGATTTTGTCCGTTTGGGGTG 60.000 52.381 0.00 0.00 37.23 4.61
6151 14691 1.000394 GATTTTGTCCGTTTGGGGTGG 60.000 52.381 0.00 0.00 36.01 4.61
6152 14692 1.677637 TTTTGTCCGTTTGGGGTGGC 61.678 55.000 0.00 0.00 36.01 5.01
6153 14693 2.856039 TTTGTCCGTTTGGGGTGGCA 62.856 55.000 0.00 0.00 36.01 4.92
6154 14694 2.519780 GTCCGTTTGGGGTGGCAA 60.520 61.111 0.00 0.00 36.01 4.52
6155 14695 1.906333 GTCCGTTTGGGGTGGCAAT 60.906 57.895 0.00 0.00 36.01 3.56
6156 14696 1.905843 TCCGTTTGGGGTGGCAATG 60.906 57.895 0.00 0.00 36.01 2.82
6157 14697 2.656055 CGTTTGGGGTGGCAATGG 59.344 61.111 0.00 0.00 0.00 3.16
6158 14698 2.941616 CGTTTGGGGTGGCAATGGG 61.942 63.158 0.00 0.00 0.00 4.00
6159 14699 1.841103 GTTTGGGGTGGCAATGGGT 60.841 57.895 0.00 0.00 0.00 4.51
6160 14700 1.840650 TTTGGGGTGGCAATGGGTG 60.841 57.895 0.00 0.00 0.00 4.61
6161 14701 2.611964 TTTGGGGTGGCAATGGGTGT 62.612 55.000 0.00 0.00 0.00 4.16
6162 14702 2.679996 GGGGTGGCAATGGGTGTC 60.680 66.667 0.00 0.00 0.00 3.67
6163 14703 2.117206 GGGTGGCAATGGGTGTCA 59.883 61.111 0.00 0.00 40.39 3.58
6164 14704 1.532794 GGGTGGCAATGGGTGTCAA 60.533 57.895 0.00 0.00 45.43 3.18
6165 14705 1.118356 GGGTGGCAATGGGTGTCAAA 61.118 55.000 0.00 0.00 45.43 2.69
6166 14706 0.755686 GGTGGCAATGGGTGTCAAAA 59.244 50.000 0.00 0.00 45.43 2.44
6167 14707 1.540146 GGTGGCAATGGGTGTCAAAAC 60.540 52.381 0.00 0.00 45.43 2.43
6168 14708 0.387202 TGGCAATGGGTGTCAAAACG 59.613 50.000 0.00 0.00 39.47 3.60
6169 14709 0.319469 GGCAATGGGTGTCAAAACGG 60.319 55.000 0.00 0.00 0.00 4.44
6170 14710 0.671251 GCAATGGGTGTCAAAACGGA 59.329 50.000 0.00 0.00 0.00 4.69
6171 14711 1.601914 GCAATGGGTGTCAAAACGGAC 60.602 52.381 0.00 0.00 38.29 4.79
6172 14712 0.948678 AATGGGTGTCAAAACGGACG 59.051 50.000 0.00 0.00 40.72 4.79
6173 14713 0.179040 ATGGGTGTCAAAACGGACGT 60.179 50.000 0.00 0.00 40.72 4.34
6174 14714 1.090625 TGGGTGTCAAAACGGACGTG 61.091 55.000 0.00 0.00 40.72 4.49
6175 14715 1.010462 GGTGTCAAAACGGACGTGC 60.010 57.895 0.00 0.00 40.72 5.34
6176 14716 1.707239 GGTGTCAAAACGGACGTGCA 61.707 55.000 8.11 0.00 40.72 4.57
6177 14717 0.306533 GTGTCAAAACGGACGTGCAT 59.693 50.000 8.11 0.00 40.72 3.96
6178 14718 0.306228 TGTCAAAACGGACGTGCATG 59.694 50.000 8.11 3.82 40.72 4.06
6179 14719 0.306533 GTCAAAACGGACGTGCATGT 59.693 50.000 12.38 12.38 0.00 3.21
6180 14720 0.584396 TCAAAACGGACGTGCATGTC 59.416 50.000 27.61 27.61 38.17 3.06
6186 14726 2.813908 GACGTGCATGTCCGGGTC 60.814 66.667 25.72 2.62 32.61 4.46
6187 14727 3.296709 GACGTGCATGTCCGGGTCT 62.297 63.158 25.72 0.00 32.61 3.85
6188 14728 1.940883 GACGTGCATGTCCGGGTCTA 61.941 60.000 25.72 0.00 32.61 2.59
6189 14729 1.226974 CGTGCATGTCCGGGTCTAG 60.227 63.158 0.00 0.00 0.00 2.43
6190 14730 1.898154 GTGCATGTCCGGGTCTAGT 59.102 57.895 0.00 0.00 0.00 2.57
6191 14731 0.249398 GTGCATGTCCGGGTCTAGTT 59.751 55.000 0.00 0.00 0.00 2.24
6192 14732 0.249120 TGCATGTCCGGGTCTAGTTG 59.751 55.000 0.00 0.00 0.00 3.16
6193 14733 0.535335 GCATGTCCGGGTCTAGTTGA 59.465 55.000 0.00 0.00 0.00 3.18
6194 14734 1.066430 GCATGTCCGGGTCTAGTTGAA 60.066 52.381 0.00 0.00 0.00 2.69
6195 14735 2.893637 CATGTCCGGGTCTAGTTGAAG 58.106 52.381 0.00 0.00 0.00 3.02
6196 14736 2.005370 TGTCCGGGTCTAGTTGAAGT 57.995 50.000 0.00 0.00 0.00 3.01
6197 14737 1.891150 TGTCCGGGTCTAGTTGAAGTC 59.109 52.381 0.00 0.00 0.00 3.01
6198 14738 1.135460 GTCCGGGTCTAGTTGAAGTCG 60.135 57.143 0.00 0.00 0.00 4.18
6199 14739 0.458025 CCGGGTCTAGTTGAAGTCGC 60.458 60.000 0.00 0.00 0.00 5.19
6200 14740 0.458025 CGGGTCTAGTTGAAGTCGCC 60.458 60.000 0.00 0.00 0.00 5.54
6201 14741 0.108281 GGGTCTAGTTGAAGTCGCCC 60.108 60.000 0.00 0.00 0.00 6.13
6202 14742 0.606604 GGTCTAGTTGAAGTCGCCCA 59.393 55.000 0.00 0.00 0.00 5.36
6203 14743 1.001633 GGTCTAGTTGAAGTCGCCCAA 59.998 52.381 0.00 0.00 0.00 4.12
6204 14744 2.067013 GTCTAGTTGAAGTCGCCCAAC 58.933 52.381 0.00 0.00 42.02 3.77
6205 14745 1.068474 CTAGTTGAAGTCGCCCAACG 58.932 55.000 0.00 0.00 45.19 4.10
6206 14746 0.947180 TAGTTGAAGTCGCCCAACGC 60.947 55.000 0.00 0.00 45.19 4.84
6207 14747 2.975799 TTGAAGTCGCCCAACGCC 60.976 61.111 0.00 0.00 43.23 5.68
6224 14764 4.992511 CGCCGACCGACCCCAAAA 62.993 66.667 0.00 0.00 40.02 2.44
6225 14765 3.359523 GCCGACCGACCCCAAAAC 61.360 66.667 0.00 0.00 0.00 2.43
6226 14766 2.428622 CCGACCGACCCCAAAACT 59.571 61.111 0.00 0.00 0.00 2.66
6227 14767 1.964373 CCGACCGACCCCAAAACTG 60.964 63.158 0.00 0.00 0.00 3.16
6228 14768 1.227734 CGACCGACCCCAAAACTGT 60.228 57.895 0.00 0.00 0.00 3.55
6229 14769 1.226030 CGACCGACCCCAAAACTGTC 61.226 60.000 0.00 0.00 0.00 3.51
6230 14770 0.887836 GACCGACCCCAAAACTGTCC 60.888 60.000 0.00 0.00 0.00 4.02
6231 14771 1.964373 CCGACCCCAAAACTGTCCG 60.964 63.158 0.00 0.00 0.00 4.79
6232 14772 2.613506 CGACCCCAAAACTGTCCGC 61.614 63.158 0.00 0.00 0.00 5.54
6233 14773 2.203437 ACCCCAAAACTGTCCGCC 60.203 61.111 0.00 0.00 0.00 6.13
6234 14774 2.989253 CCCCAAAACTGTCCGCCC 60.989 66.667 0.00 0.00 0.00 6.13
6235 14775 2.203422 CCCAAAACTGTCCGCCCA 60.203 61.111 0.00 0.00 0.00 5.36
6236 14776 2.268076 CCCAAAACTGTCCGCCCAG 61.268 63.158 0.00 0.00 38.45 4.45
6237 14777 1.228124 CCAAAACTGTCCGCCCAGA 60.228 57.895 6.57 0.00 36.30 3.86
6238 14778 1.515521 CCAAAACTGTCCGCCCAGAC 61.516 60.000 6.57 0.00 36.30 3.51
6239 14779 1.228154 AAAACTGTCCGCCCAGACC 60.228 57.895 6.57 0.00 35.83 3.85
6240 14780 3.530910 AAACTGTCCGCCCAGACCG 62.531 63.158 6.57 0.00 35.83 4.79
6242 14782 4.742201 CTGTCCGCCCAGACCGTG 62.742 72.222 0.00 0.00 35.83 4.94
6277 14817 3.591835 AGCTCGCGCTCTAGCCTC 61.592 66.667 18.80 0.00 45.15 4.70
6278 14818 4.973360 GCTCGCGCTCTAGCCTCG 62.973 72.222 5.56 0.97 37.91 4.63
6279 14819 4.973360 CTCGCGCTCTAGCCTCGC 62.973 72.222 5.56 11.34 44.76 5.03
6283 14823 3.665226 CGCTCTAGCCTCGCCGAT 61.665 66.667 0.00 0.00 37.91 4.18
6284 14824 2.049618 GCTCTAGCCTCGCCGATG 60.050 66.667 0.00 0.00 34.31 3.84
6285 14825 2.049618 CTCTAGCCTCGCCGATGC 60.050 66.667 6.23 6.23 0.00 3.91
6286 14826 2.833121 TCTAGCCTCGCCGATGCA 60.833 61.111 16.47 0.00 37.32 3.96
6287 14827 2.355599 CTAGCCTCGCCGATGCAG 60.356 66.667 16.47 8.00 37.32 4.41
6288 14828 4.592192 TAGCCTCGCCGATGCAGC 62.592 66.667 16.47 3.99 37.32 5.25
6298 14838 3.558411 GATGCAGCCGTCGCAGTC 61.558 66.667 0.00 0.00 43.88 3.51
6349 14889 4.111016 CTCACCCTCGCGTGCGTA 62.111 66.667 14.47 0.38 40.74 4.42
6350 14890 4.111016 TCACCCTCGCGTGCGTAG 62.111 66.667 14.47 9.93 40.74 3.51
6376 14916 2.778679 CTAGCAAGCAACGACCGC 59.221 61.111 0.00 0.00 0.00 5.68
6377 14917 3.071459 CTAGCAAGCAACGACCGCG 62.071 63.158 0.00 0.00 44.79 6.46
6390 14930 4.654412 CCGCGCCTGGCTAGCTAG 62.654 72.222 20.50 20.50 40.44 3.42
6473 15013 4.575973 GGCATGCCTCGCCCTGAT 62.576 66.667 29.98 0.00 44.22 2.90
6474 15014 3.285215 GCATGCCTCGCCCTGATG 61.285 66.667 6.36 0.00 0.00 3.07
6475 15015 3.285215 CATGCCTCGCCCTGATGC 61.285 66.667 0.00 0.00 38.56 3.91
6476 15016 4.575973 ATGCCTCGCCCTGATGCC 62.576 66.667 0.00 0.00 37.42 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.568081 GCCTGTGATAAAGAATGATCTCATGC 60.568 42.308 0.00 0.00 36.56 4.06
47 48 3.282021 ACCGGACTGATTCATTGGAATG 58.718 45.455 9.46 0.00 43.69 2.67
165 166 4.038042 CACGCTTGATCTAGATTACCTGGA 59.962 45.833 6.70 0.00 36.79 3.86
169 170 4.933330 TCACACGCTTGATCTAGATTACC 58.067 43.478 6.70 0.00 0.00 2.85
202 203 0.385390 CAACCTGTTGGACAAGGCAC 59.615 55.000 2.03 0.00 36.95 5.01
210 211 1.541670 GGCTTACGACAACCTGTTGGA 60.542 52.381 14.05 0.00 44.45 3.53
214 215 0.320697 GGAGGCTTACGACAACCTGT 59.679 55.000 0.00 0.00 30.95 4.00
239 240 5.163301 TGAGCAAGGTAGAATTATGGAGGTC 60.163 44.000 0.00 0.00 0.00 3.85
247 248 8.928448 AGATCATTACTGAGCAAGGTAGAATTA 58.072 33.333 0.97 0.00 40.32 1.40
298 299 6.573725 CAGTGGTCGAAAATCTAAAAACTTCG 59.426 38.462 0.00 0.00 40.07 3.79
312 313 0.034337 GTAGTGGCCAGTGGTCGAAA 59.966 55.000 23.96 0.00 0.00 3.46
330 331 4.274950 CGTGAACACAAAACTATTCCAGGT 59.725 41.667 5.80 0.00 0.00 4.00
338 339 3.133362 AGGGAGACGTGAACACAAAACTA 59.867 43.478 0.00 0.00 0.00 2.24
343 344 1.410004 AGAGGGAGACGTGAACACAA 58.590 50.000 0.00 0.00 0.00 3.33
378 379 3.059597 GGACTATCAATCGGCAATTCACG 60.060 47.826 0.00 0.00 0.00 4.35
392 395 2.094182 GCGTCACTGGAAAGGACTATCA 60.094 50.000 0.00 0.00 0.00 2.15
418 421 0.452184 CTCAAGTTAGCGCTCCTCGA 59.548 55.000 16.34 5.21 41.67 4.04
420 423 0.179097 CCCTCAAGTTAGCGCTCCTC 60.179 60.000 16.34 5.65 0.00 3.71
575 579 4.034742 GCTCTTTTTAGAAACACGGTGACA 59.965 41.667 16.29 0.00 0.00 3.58
576 580 4.524749 GCTCTTTTTAGAAACACGGTGAC 58.475 43.478 16.29 5.94 0.00 3.67
579 583 3.200483 ACGCTCTTTTTAGAAACACGGT 58.800 40.909 0.00 0.00 0.00 4.83
609 613 1.499049 GACACTGTCGACCCTTTCAC 58.501 55.000 14.12 0.00 0.00 3.18
624 628 1.368641 TGGCAATGTGATAGCGACAC 58.631 50.000 0.00 0.00 38.55 3.67
662 666 1.901650 CTTGCACGGAAGGCTTCGAC 61.902 60.000 20.26 10.19 0.00 4.20
714 718 6.646240 ACCAAGTGAAATGAAATGTAATGTGC 59.354 34.615 0.00 0.00 0.00 4.57
716 720 9.691362 GTAACCAAGTGAAATGAAATGTAATGT 57.309 29.630 0.00 0.00 0.00 2.71
722 726 7.710475 AGTTTGGTAACCAAGTGAAATGAAATG 59.290 33.333 0.00 0.00 44.84 2.32
724 728 7.176589 AGTTTGGTAACCAAGTGAAATGAAA 57.823 32.000 0.00 0.00 44.84 2.69
725 729 6.783708 AGTTTGGTAACCAAGTGAAATGAA 57.216 33.333 0.00 0.00 44.84 2.57
726 730 7.883391 TTAGTTTGGTAACCAAGTGAAATGA 57.117 32.000 0.00 0.00 44.84 2.57
727 731 8.977505 CATTTAGTTTGGTAACCAAGTGAAATG 58.022 33.333 5.77 5.77 44.84 2.32
728 732 7.655732 GCATTTAGTTTGGTAACCAAGTGAAAT 59.344 33.333 0.58 5.47 44.84 2.17
730 734 6.096987 TGCATTTAGTTTGGTAACCAAGTGAA 59.903 34.615 0.58 0.00 44.84 3.18
731 735 5.594725 TGCATTTAGTTTGGTAACCAAGTGA 59.405 36.000 0.58 0.00 44.84 3.41
732 736 5.837437 TGCATTTAGTTTGGTAACCAAGTG 58.163 37.500 0.00 0.00 44.84 3.16
734 738 5.920273 CACTGCATTTAGTTTGGTAACCAAG 59.080 40.000 0.00 0.00 44.84 3.61
735 739 5.221342 CCACTGCATTTAGTTTGGTAACCAA 60.221 40.000 0.00 0.00 42.29 3.67
736 740 4.279671 CCACTGCATTTAGTTTGGTAACCA 59.720 41.667 0.00 0.00 34.71 3.67
737 741 4.521256 TCCACTGCATTTAGTTTGGTAACC 59.479 41.667 0.00 0.00 34.71 2.85
738 742 5.699097 TCCACTGCATTTAGTTTGGTAAC 57.301 39.130 0.00 0.00 34.36 2.50
739 743 6.065374 TCTTCCACTGCATTTAGTTTGGTAA 58.935 36.000 0.00 0.00 0.00 2.85
752 1980 2.912956 ACCCTTATTCTCTTCCACTGCA 59.087 45.455 0.00 0.00 0.00 4.41
753 1981 3.055094 TCACCCTTATTCTCTTCCACTGC 60.055 47.826 0.00 0.00 0.00 4.40
757 1985 5.726308 TCATTCTCACCCTTATTCTCTTCCA 59.274 40.000 0.00 0.00 0.00 3.53
758 1986 6.126911 ACTCATTCTCACCCTTATTCTCTTCC 60.127 42.308 0.00 0.00 0.00 3.46
761 1989 6.352565 CCAACTCATTCTCACCCTTATTCTCT 60.353 42.308 0.00 0.00 0.00 3.10
763 1991 5.749462 CCAACTCATTCTCACCCTTATTCT 58.251 41.667 0.00 0.00 0.00 2.40
764 1992 4.336713 GCCAACTCATTCTCACCCTTATTC 59.663 45.833 0.00 0.00 0.00 1.75
766 1994 3.525199 AGCCAACTCATTCTCACCCTTAT 59.475 43.478 0.00 0.00 0.00 1.73
775 2221 2.818432 CTCAAAGCAGCCAACTCATTCT 59.182 45.455 0.00 0.00 0.00 2.40
783 2229 6.832520 TTTACATAATCTCAAAGCAGCCAA 57.167 33.333 0.00 0.00 0.00 4.52
784 2230 6.832520 TTTTACATAATCTCAAAGCAGCCA 57.167 33.333 0.00 0.00 0.00 4.75
810 2256 4.141869 ACAATCTCAAAGCAGCCAGTTTTT 60.142 37.500 0.00 0.00 0.00 1.94
811 2257 3.385755 ACAATCTCAAAGCAGCCAGTTTT 59.614 39.130 0.00 0.00 0.00 2.43
812 2258 2.961062 ACAATCTCAAAGCAGCCAGTTT 59.039 40.909 0.00 0.00 0.00 2.66
813 2259 2.295349 CACAATCTCAAAGCAGCCAGTT 59.705 45.455 0.00 0.00 0.00 3.16
814 2260 1.884579 CACAATCTCAAAGCAGCCAGT 59.115 47.619 0.00 0.00 0.00 4.00
862 2309 2.124122 GGATGCACAACACGTTTTTCC 58.876 47.619 0.00 0.00 0.00 3.13
863 2310 1.778591 CGGATGCACAACACGTTTTTC 59.221 47.619 0.00 0.00 0.00 2.29
896 2343 0.535335 CCGGGTCCAAATCTCTCGAA 59.465 55.000 0.00 0.00 0.00 3.71
917 2735 7.121315 AGGCCAACTGAAAAATAGTTCTATGAC 59.879 37.037 5.01 0.00 36.29 3.06
1796 3897 3.391296 TCTTGATATACCTGCCCTTGTCC 59.609 47.826 0.00 0.00 0.00 4.02
1918 4022 3.428687 TGGCAGTATGTGTTGGCAA 57.571 47.368 0.00 0.00 45.36 4.52
2856 4975 3.220110 GCAGAATGGATGTCATGACCAT 58.780 45.455 22.85 15.94 44.87 3.55
2867 4986 1.229359 CCCCAGCTGCAGAATGGAT 59.771 57.895 30.06 0.00 34.26 3.41
2894 5013 1.279846 TCAATCGGTTGGGGAAGGTAC 59.720 52.381 8.88 0.00 35.99 3.34
2936 5055 3.952675 AGCCGCACACAAAGCACG 61.953 61.111 0.00 0.00 0.00 5.34
3188 5313 3.786818 GCGAGCATGCATTAGACAAAGAC 60.787 47.826 21.98 0.00 34.15 3.01
3850 6035 5.957842 TTCTCGAAGCAACAATATGGTTT 57.042 34.783 0.00 0.00 40.82 3.27
4052 6414 3.429085 GTTAAGCCTGTTTGCATCATCG 58.571 45.455 0.00 0.00 0.00 3.84
4094 6456 8.687630 GCTTCAGCATATACAGGATCACTGAAG 61.688 44.444 19.79 19.79 44.81 3.02
4608 10578 9.533253 AAAATCATGAACCAAACTGAAAAGTAG 57.467 29.630 0.00 0.00 0.00 2.57
4764 10738 0.473501 ATGGTGGCATTGGTGGGTTT 60.474 50.000 0.00 0.00 0.00 3.27
5447 13982 1.359117 CGACAGGTCACGTCACAGT 59.641 57.895 0.00 0.00 32.72 3.55
5456 13991 1.225855 GACACAATTGCGACAGGTCA 58.774 50.000 5.05 0.00 0.00 4.02
5470 14005 3.713003 AGTGGATCTCCTACATGACACA 58.287 45.455 0.00 0.00 36.82 3.72
5471 14006 4.744795 AAGTGGATCTCCTACATGACAC 57.255 45.455 0.00 0.00 36.82 3.67
5509 14046 1.477553 TTACTAGCCCACTGTACCGG 58.522 55.000 0.00 0.00 0.00 5.28
5645 14184 1.004745 TCATGGAAGGGAGTTGGAAGC 59.995 52.381 0.00 0.00 0.00 3.86
5648 14187 2.507058 CTCATCATGGAAGGGAGTTGGA 59.493 50.000 0.00 0.00 0.00 3.53
5739 14279 7.311092 ACCCGTAATACAATATCTCAATCCA 57.689 36.000 0.00 0.00 0.00 3.41
5800 14340 1.135972 CACGGCAACACTAGAACATGC 60.136 52.381 0.00 1.34 36.31 4.06
5811 14351 2.124653 ACGGGAAACACGGCAACA 60.125 55.556 0.00 0.00 35.23 3.33
5813 14353 1.595929 GAGACGGGAAACACGGCAA 60.596 57.895 1.38 0.00 43.13 4.52
5825 14365 5.061920 AGAAAAGTAACTAGCTGAGACGG 57.938 43.478 0.00 0.00 0.00 4.79
5826 14366 6.641314 TGAAAGAAAAGTAACTAGCTGAGACG 59.359 38.462 0.00 0.00 0.00 4.18
5827 14367 7.654116 ACTGAAAGAAAAGTAACTAGCTGAGAC 59.346 37.037 0.00 0.00 37.43 3.36
5828 14368 7.653713 CACTGAAAGAAAAGTAACTAGCTGAGA 59.346 37.037 0.00 0.00 37.43 3.27
5829 14369 7.439655 ACACTGAAAGAAAAGTAACTAGCTGAG 59.560 37.037 0.00 0.00 37.43 3.35
5830 14370 7.272978 ACACTGAAAGAAAAGTAACTAGCTGA 58.727 34.615 0.00 0.00 37.43 4.26
5831 14371 7.484035 ACACTGAAAGAAAAGTAACTAGCTG 57.516 36.000 0.00 0.00 37.43 4.24
5832 14372 9.043079 GTAACACTGAAAGAAAAGTAACTAGCT 57.957 33.333 0.00 0.00 37.43 3.32
5833 14373 8.823818 TGTAACACTGAAAGAAAAGTAACTAGC 58.176 33.333 0.00 0.00 37.43 3.42
5836 14376 9.174166 ACATGTAACACTGAAAGAAAAGTAACT 57.826 29.630 0.00 0.00 37.43 2.24
5837 14377 9.783256 AACATGTAACACTGAAAGAAAAGTAAC 57.217 29.630 0.00 0.00 37.43 2.50
5838 14378 9.781834 CAACATGTAACACTGAAAGAAAAGTAA 57.218 29.630 0.00 0.00 37.43 2.24
5839 14379 8.952278 ACAACATGTAACACTGAAAGAAAAGTA 58.048 29.630 0.00 0.00 37.43 2.24
5840 14380 7.826690 ACAACATGTAACACTGAAAGAAAAGT 58.173 30.769 0.00 0.00 37.43 2.66
5841 14381 9.950680 ATACAACATGTAACACTGAAAGAAAAG 57.049 29.630 0.00 0.00 36.31 2.27
5842 14382 9.944663 GATACAACATGTAACACTGAAAGAAAA 57.055 29.630 0.00 0.00 36.31 2.29
5843 14383 8.564574 GGATACAACATGTAACACTGAAAGAAA 58.435 33.333 0.00 0.00 36.31 2.52
5844 14384 7.095397 CGGATACAACATGTAACACTGAAAGAA 60.095 37.037 0.00 0.00 36.31 2.52
5845 14385 6.367695 CGGATACAACATGTAACACTGAAAGA 59.632 38.462 0.00 0.00 36.31 2.52
5846 14386 6.147164 ACGGATACAACATGTAACACTGAAAG 59.853 38.462 0.00 0.00 36.31 2.62
5847 14387 5.992829 ACGGATACAACATGTAACACTGAAA 59.007 36.000 0.00 0.00 36.31 2.69
5848 14388 5.543714 ACGGATACAACATGTAACACTGAA 58.456 37.500 0.00 0.00 36.31 3.02
5849 14389 5.047590 AGACGGATACAACATGTAACACTGA 60.048 40.000 0.00 0.00 36.31 3.41
5850 14390 5.168569 AGACGGATACAACATGTAACACTG 58.831 41.667 0.00 0.00 36.31 3.66
5851 14391 5.401531 AGACGGATACAACATGTAACACT 57.598 39.130 0.00 0.00 36.31 3.55
5852 14392 4.264614 CGAGACGGATACAACATGTAACAC 59.735 45.833 0.00 0.00 36.31 3.32
5853 14393 4.417506 CGAGACGGATACAACATGTAACA 58.582 43.478 0.00 0.00 36.31 2.41
5854 14394 3.242248 GCGAGACGGATACAACATGTAAC 59.758 47.826 0.00 0.00 36.31 2.50
5855 14395 3.129813 AGCGAGACGGATACAACATGTAA 59.870 43.478 0.00 0.00 36.31 2.41
5856 14396 2.686405 AGCGAGACGGATACAACATGTA 59.314 45.455 0.00 0.00 37.24 2.29
5857 14397 1.476891 AGCGAGACGGATACAACATGT 59.523 47.619 0.00 0.00 0.00 3.21
5858 14398 2.120232 GAGCGAGACGGATACAACATG 58.880 52.381 0.00 0.00 0.00 3.21
5859 14399 1.268589 CGAGCGAGACGGATACAACAT 60.269 52.381 0.00 0.00 0.00 2.71
5860 14400 0.098200 CGAGCGAGACGGATACAACA 59.902 55.000 0.00 0.00 0.00 3.33
5861 14401 0.098376 ACGAGCGAGACGGATACAAC 59.902 55.000 0.00 0.00 34.93 3.32
5862 14402 0.806868 AACGAGCGAGACGGATACAA 59.193 50.000 0.00 0.00 34.93 2.41
5863 14403 1.328680 GTAACGAGCGAGACGGATACA 59.671 52.381 0.00 0.00 34.93 2.29
5864 14404 1.596727 AGTAACGAGCGAGACGGATAC 59.403 52.381 0.00 0.00 34.93 2.24
5865 14405 1.945387 AGTAACGAGCGAGACGGATA 58.055 50.000 0.00 0.00 34.93 2.59
5866 14406 1.093159 AAGTAACGAGCGAGACGGAT 58.907 50.000 0.00 0.00 34.93 4.18
5867 14407 0.877071 AAAGTAACGAGCGAGACGGA 59.123 50.000 0.00 0.00 34.93 4.69
5897 14437 4.327898 GCGAAAGGACGATACAACATGTAA 59.672 41.667 0.00 0.00 36.31 2.41
5931 14471 7.174946 GGTTCCATCAAAGAGATAACACAGAAA 59.825 37.037 0.00 0.00 34.43 2.52
5947 14487 9.921637 GTAATAGAAATTGTTTGGTTCCATCAA 57.078 29.630 10.46 10.46 0.00 2.57
5982 14522 7.531857 TGGAATCCTACACAAATAAAAAGCA 57.468 32.000 0.00 0.00 0.00 3.91
5983 14523 8.825667 TTTGGAATCCTACACAAATAAAAAGC 57.174 30.769 0.00 0.00 0.00 3.51
5993 14533 5.647658 GTCATGACATTTGGAATCCTACACA 59.352 40.000 21.07 0.00 0.00 3.72
6002 14542 6.018016 CGCATATAGTGTCATGACATTTGGAA 60.018 38.462 30.10 12.40 43.97 3.53
6030 14570 7.730332 AGGGCCTTTTATTTCCAGGATTAATAG 59.270 37.037 0.00 0.00 0.00 1.73
6058 14598 3.292460 AGAGTACTGGCACCAGACTATC 58.708 50.000 23.30 13.86 46.30 2.08
6065 14605 2.597578 TACAGAGAGTACTGGCACCA 57.402 50.000 0.00 0.00 41.59 4.17
6069 14609 1.137282 GGCCTTACAGAGAGTACTGGC 59.863 57.143 0.00 3.83 44.95 4.85
6070 14610 2.457598 TGGCCTTACAGAGAGTACTGG 58.542 52.381 3.32 0.00 41.59 4.00
6071 14611 3.511934 AGTTGGCCTTACAGAGAGTACTG 59.488 47.826 3.32 0.00 42.78 2.74
6072 14612 3.764972 GAGTTGGCCTTACAGAGAGTACT 59.235 47.826 3.32 0.00 30.91 2.73
6073 14613 3.119065 GGAGTTGGCCTTACAGAGAGTAC 60.119 52.174 3.32 0.00 30.91 2.73
6074 14614 3.097614 GGAGTTGGCCTTACAGAGAGTA 58.902 50.000 3.32 0.00 0.00 2.59
6075 14615 1.903183 GGAGTTGGCCTTACAGAGAGT 59.097 52.381 3.32 0.00 0.00 3.24
6076 14616 1.902508 TGGAGTTGGCCTTACAGAGAG 59.097 52.381 3.32 0.00 0.00 3.20
6077 14617 1.623811 GTGGAGTTGGCCTTACAGAGA 59.376 52.381 3.32 0.00 0.00 3.10
6078 14618 1.625818 AGTGGAGTTGGCCTTACAGAG 59.374 52.381 3.32 0.00 0.00 3.35
6079 14619 1.347707 CAGTGGAGTTGGCCTTACAGA 59.652 52.381 3.32 0.00 0.00 3.41
6080 14620 1.813513 CAGTGGAGTTGGCCTTACAG 58.186 55.000 3.32 0.00 0.00 2.74
6081 14621 0.250727 GCAGTGGAGTTGGCCTTACA 60.251 55.000 3.32 0.00 0.00 2.41
6082 14622 0.250727 TGCAGTGGAGTTGGCCTTAC 60.251 55.000 3.32 1.81 0.00 2.34
6083 14623 0.476338 TTGCAGTGGAGTTGGCCTTA 59.524 50.000 3.32 0.00 0.00 2.69
6084 14624 0.825010 CTTGCAGTGGAGTTGGCCTT 60.825 55.000 3.32 0.00 0.00 4.35
6085 14625 1.228367 CTTGCAGTGGAGTTGGCCT 60.228 57.895 3.32 0.00 0.00 5.19
6086 14626 1.228245 TCTTGCAGTGGAGTTGGCC 60.228 57.895 0.00 0.00 0.00 5.36
6087 14627 1.518903 GGTCTTGCAGTGGAGTTGGC 61.519 60.000 0.00 0.00 0.00 4.52
6088 14628 0.890996 GGGTCTTGCAGTGGAGTTGG 60.891 60.000 0.00 0.00 0.00 3.77
6089 14629 0.890996 GGGGTCTTGCAGTGGAGTTG 60.891 60.000 0.00 0.00 0.00 3.16
6090 14630 1.352622 TGGGGTCTTGCAGTGGAGTT 61.353 55.000 0.00 0.00 0.00 3.01
6091 14631 1.352622 TTGGGGTCTTGCAGTGGAGT 61.353 55.000 0.00 0.00 0.00 3.85
6092 14632 0.178992 TTTGGGGTCTTGCAGTGGAG 60.179 55.000 0.00 0.00 0.00 3.86
6093 14633 0.467290 GTTTGGGGTCTTGCAGTGGA 60.467 55.000 0.00 0.00 0.00 4.02
6094 14634 1.795170 CGTTTGGGGTCTTGCAGTGG 61.795 60.000 0.00 0.00 0.00 4.00
6095 14635 1.654220 CGTTTGGGGTCTTGCAGTG 59.346 57.895 0.00 0.00 0.00 3.66
6096 14636 1.528309 CCGTTTGGGGTCTTGCAGT 60.528 57.895 0.00 0.00 0.00 4.40
6097 14637 1.228124 TCCGTTTGGGGTCTTGCAG 60.228 57.895 0.00 0.00 36.01 4.41
6098 14638 1.527380 GTCCGTTTGGGGTCTTGCA 60.527 57.895 0.00 0.00 36.01 4.08
6099 14639 2.613506 CGTCCGTTTGGGGTCTTGC 61.614 63.158 0.00 0.00 36.01 4.01
6100 14640 1.226030 GACGTCCGTTTGGGGTCTTG 61.226 60.000 3.51 0.00 36.65 3.02
6101 14641 1.070275 GACGTCCGTTTGGGGTCTT 59.930 57.895 3.51 0.00 36.65 3.01
6102 14642 2.739132 GACGTCCGTTTGGGGTCT 59.261 61.111 3.51 0.00 36.65 3.85
6103 14643 2.357881 GGACGTCCGTTTGGGGTC 60.358 66.667 20.85 0.00 37.97 4.46
6113 14653 3.237290 CGGACAAAACGGACGTCC 58.763 61.111 25.28 25.28 44.79 4.79
6120 14660 2.657184 GGACAAAATCCGGACAAAACG 58.343 47.619 6.12 0.00 37.88 3.60
6130 14670 1.000394 CACCCCAAACGGACAAAATCC 60.000 52.381 0.00 0.00 45.20 3.01
6131 14671 1.000394 CCACCCCAAACGGACAAAATC 60.000 52.381 0.00 0.00 0.00 2.17
6132 14672 1.044611 CCACCCCAAACGGACAAAAT 58.955 50.000 0.00 0.00 0.00 1.82
6133 14673 1.677637 GCCACCCCAAACGGACAAAA 61.678 55.000 0.00 0.00 0.00 2.44
6134 14674 2.128507 GCCACCCCAAACGGACAAA 61.129 57.895 0.00 0.00 0.00 2.83
6135 14675 2.519780 GCCACCCCAAACGGACAA 60.520 61.111 0.00 0.00 0.00 3.18
6136 14676 2.648613 ATTGCCACCCCAAACGGACA 62.649 55.000 0.00 0.00 0.00 4.02
6137 14677 1.906333 ATTGCCACCCCAAACGGAC 60.906 57.895 0.00 0.00 0.00 4.79
6138 14678 1.905843 CATTGCCACCCCAAACGGA 60.906 57.895 0.00 0.00 0.00 4.69
6139 14679 2.656055 CATTGCCACCCCAAACGG 59.344 61.111 0.00 0.00 0.00 4.44
6140 14680 2.656055 CCATTGCCACCCCAAACG 59.344 61.111 0.00 0.00 0.00 3.60
6141 14681 1.841103 ACCCATTGCCACCCCAAAC 60.841 57.895 0.00 0.00 0.00 2.93
6142 14682 1.840650 CACCCATTGCCACCCCAAA 60.841 57.895 0.00 0.00 0.00 3.28
6143 14683 2.203758 CACCCATTGCCACCCCAA 60.204 61.111 0.00 0.00 0.00 4.12
6144 14684 3.516512 ACACCCATTGCCACCCCA 61.517 61.111 0.00 0.00 0.00 4.96
6145 14685 2.679996 GACACCCATTGCCACCCC 60.680 66.667 0.00 0.00 0.00 4.95
6146 14686 1.118356 TTTGACACCCATTGCCACCC 61.118 55.000 0.00 0.00 0.00 4.61
6147 14687 0.755686 TTTTGACACCCATTGCCACC 59.244 50.000 0.00 0.00 0.00 4.61
6148 14688 1.864565 GTTTTGACACCCATTGCCAC 58.135 50.000 0.00 0.00 0.00 5.01
6149 14689 0.387202 CGTTTTGACACCCATTGCCA 59.613 50.000 0.00 0.00 0.00 4.92
6150 14690 0.319469 CCGTTTTGACACCCATTGCC 60.319 55.000 0.00 0.00 0.00 4.52
6151 14691 0.671251 TCCGTTTTGACACCCATTGC 59.329 50.000 0.00 0.00 0.00 3.56
6152 14692 1.334599 CGTCCGTTTTGACACCCATTG 60.335 52.381 0.00 0.00 34.88 2.82
6153 14693 0.948678 CGTCCGTTTTGACACCCATT 59.051 50.000 0.00 0.00 34.88 3.16
6154 14694 0.179040 ACGTCCGTTTTGACACCCAT 60.179 50.000 0.00 0.00 34.88 4.00
6155 14695 1.090625 CACGTCCGTTTTGACACCCA 61.091 55.000 0.00 0.00 34.88 4.51
6156 14696 1.644913 CACGTCCGTTTTGACACCC 59.355 57.895 0.00 0.00 34.88 4.61
6157 14697 1.010462 GCACGTCCGTTTTGACACC 60.010 57.895 0.00 0.00 34.88 4.16
6158 14698 0.306533 ATGCACGTCCGTTTTGACAC 59.693 50.000 0.00 0.00 34.88 3.67
6159 14699 0.306228 CATGCACGTCCGTTTTGACA 59.694 50.000 0.00 0.00 34.88 3.58
6160 14700 0.306533 ACATGCACGTCCGTTTTGAC 59.693 50.000 0.00 0.00 0.00 3.18
6161 14701 0.584396 GACATGCACGTCCGTTTTGA 59.416 50.000 0.29 0.00 0.00 2.69
6162 14702 0.385473 GGACATGCACGTCCGTTTTG 60.385 55.000 17.32 0.00 45.77 2.44
6163 14703 1.946267 GGACATGCACGTCCGTTTT 59.054 52.632 17.32 0.00 45.77 2.43
6164 14704 3.650369 GGACATGCACGTCCGTTT 58.350 55.556 17.32 0.00 45.77 3.60
6169 14709 1.940883 TAGACCCGGACATGCACGTC 61.941 60.000 3.86 3.86 35.03 4.34
6170 14710 1.945354 CTAGACCCGGACATGCACGT 61.945 60.000 0.73 0.00 0.00 4.49
6171 14711 1.226974 CTAGACCCGGACATGCACG 60.227 63.158 0.73 0.00 0.00 5.34
6172 14712 0.249398 AACTAGACCCGGACATGCAC 59.751 55.000 0.73 0.00 0.00 4.57
6173 14713 0.249120 CAACTAGACCCGGACATGCA 59.751 55.000 0.73 0.00 0.00 3.96
6174 14714 0.535335 TCAACTAGACCCGGACATGC 59.465 55.000 0.73 0.00 0.00 4.06
6175 14715 2.233922 ACTTCAACTAGACCCGGACATG 59.766 50.000 0.73 0.00 0.00 3.21
6176 14716 2.496470 GACTTCAACTAGACCCGGACAT 59.504 50.000 0.73 0.00 0.00 3.06
6177 14717 1.891150 GACTTCAACTAGACCCGGACA 59.109 52.381 0.73 0.00 0.00 4.02
6178 14718 1.135460 CGACTTCAACTAGACCCGGAC 60.135 57.143 0.73 0.00 0.00 4.79
6179 14719 1.171308 CGACTTCAACTAGACCCGGA 58.829 55.000 0.73 0.00 0.00 5.14
6180 14720 0.458025 GCGACTTCAACTAGACCCGG 60.458 60.000 0.00 0.00 0.00 5.73
6181 14721 0.458025 GGCGACTTCAACTAGACCCG 60.458 60.000 0.00 0.00 0.00 5.28
6182 14722 0.108281 GGGCGACTTCAACTAGACCC 60.108 60.000 0.00 0.00 0.00 4.46
6183 14723 0.606604 TGGGCGACTTCAACTAGACC 59.393 55.000 0.00 0.00 0.00 3.85
6184 14724 2.067013 GTTGGGCGACTTCAACTAGAC 58.933 52.381 0.00 0.00 39.85 2.59
6185 14725 1.336517 CGTTGGGCGACTTCAACTAGA 60.337 52.381 8.49 0.00 44.77 2.43
6186 14726 1.068474 CGTTGGGCGACTTCAACTAG 58.932 55.000 8.49 0.00 44.77 2.57
6187 14727 0.947180 GCGTTGGGCGACTTCAACTA 60.947 55.000 8.49 0.00 44.77 2.24
6188 14728 2.251642 GCGTTGGGCGACTTCAACT 61.252 57.895 8.49 0.00 44.77 3.16
6189 14729 2.251371 GCGTTGGGCGACTTCAAC 59.749 61.111 0.65 0.65 44.77 3.18
6207 14747 4.992511 TTTTGGGGTCGGTCGGCG 62.993 66.667 0.00 0.00 0.00 6.46
6208 14748 3.359523 GTTTTGGGGTCGGTCGGC 61.360 66.667 0.00 0.00 0.00 5.54
6209 14749 1.964373 CAGTTTTGGGGTCGGTCGG 60.964 63.158 0.00 0.00 0.00 4.79
6210 14750 1.226030 GACAGTTTTGGGGTCGGTCG 61.226 60.000 0.00 0.00 0.00 4.79
6211 14751 0.887836 GGACAGTTTTGGGGTCGGTC 60.888 60.000 0.00 0.00 32.39 4.79
6212 14752 1.149854 GGACAGTTTTGGGGTCGGT 59.850 57.895 0.00 0.00 32.39 4.69
6213 14753 1.964373 CGGACAGTTTTGGGGTCGG 60.964 63.158 0.00 0.00 32.39 4.79
6214 14754 2.613506 GCGGACAGTTTTGGGGTCG 61.614 63.158 0.00 0.00 32.39 4.79
6215 14755 2.265904 GGCGGACAGTTTTGGGGTC 61.266 63.158 0.00 0.00 0.00 4.46
6216 14756 2.203437 GGCGGACAGTTTTGGGGT 60.203 61.111 0.00 0.00 0.00 4.95
6217 14757 2.989253 GGGCGGACAGTTTTGGGG 60.989 66.667 0.00 0.00 0.00 4.96
6218 14758 2.203422 TGGGCGGACAGTTTTGGG 60.203 61.111 0.00 0.00 0.00 4.12
6219 14759 1.228124 TCTGGGCGGACAGTTTTGG 60.228 57.895 0.00 0.00 39.48 3.28
6220 14760 1.515521 GGTCTGGGCGGACAGTTTTG 61.516 60.000 10.50 0.00 39.48 2.44
6221 14761 1.228154 GGTCTGGGCGGACAGTTTT 60.228 57.895 10.50 0.00 39.48 2.43
6222 14762 2.430367 GGTCTGGGCGGACAGTTT 59.570 61.111 10.50 0.00 39.48 2.66
6223 14763 4.003788 CGGTCTGGGCGGACAGTT 62.004 66.667 10.50 0.00 39.48 3.16
6225 14765 4.742201 CACGGTCTGGGCGGACAG 62.742 72.222 10.50 8.99 37.91 3.51
6262 14802 4.973360 GCGAGGCTAGAGCGCGAG 62.973 72.222 12.10 0.00 41.37 5.03
6266 14806 3.665226 ATCGGCGAGGCTAGAGCG 61.665 66.667 17.22 0.00 43.26 5.03
6267 14807 2.049618 CATCGGCGAGGCTAGAGC 60.050 66.667 17.22 0.00 41.14 4.09
6268 14808 2.049618 GCATCGGCGAGGCTAGAG 60.050 66.667 35.58 10.99 36.37 2.43
6269 14809 2.833121 TGCATCGGCGAGGCTAGA 60.833 61.111 39.93 22.75 45.35 2.43
6270 14810 2.355599 CTGCATCGGCGAGGCTAG 60.356 66.667 39.93 30.90 45.35 3.42
6271 14811 4.592192 GCTGCATCGGCGAGGCTA 62.592 66.667 39.93 27.10 45.35 3.93
6281 14821 3.558411 GACTGCGACGGCTGCATC 61.558 66.667 8.19 5.35 42.32 3.91
6336 14876 3.808771 CTAGCTACGCACGCGAGGG 62.809 68.421 19.66 17.40 42.83 4.30
6337 14877 2.352457 CTAGCTACGCACGCGAGG 60.352 66.667 19.66 5.48 42.83 4.63
6338 14878 2.102394 TAGCTAGCTACGCACGCGAG 62.102 60.000 20.67 5.97 42.83 5.03
6339 14879 2.102394 CTAGCTAGCTACGCACGCGA 62.102 60.000 20.67 0.00 42.83 5.87
6340 14880 1.722852 CTAGCTAGCTACGCACGCG 60.723 63.158 20.67 10.36 46.03 6.01
6341 14881 2.011881 GCTAGCTAGCTACGCACGC 61.012 63.158 33.71 21.87 45.62 5.34
6342 14882 4.213700 GCTAGCTAGCTACGCACG 57.786 61.111 33.71 17.64 45.62 5.34
6359 14899 2.778679 GCGGTCGTTGCTTGCTAG 59.221 61.111 0.00 0.00 0.00 3.42
6360 14900 3.109547 CGCGGTCGTTGCTTGCTA 61.110 61.111 0.00 0.00 0.00 3.49
6373 14913 4.654412 CTAGCTAGCCAGGCGCGG 62.654 72.222 12.13 0.00 44.76 6.46
6386 14926 3.009953 GCACGCTTGCTAGCTAGC 58.990 61.111 34.20 34.20 46.17 3.42
6457 14997 3.285215 CATCAGGGCGAGGCATGC 61.285 66.667 9.90 9.90 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.