Multiple sequence alignment - TraesCS3B01G220900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G220900 chr3B 100.000 3781 0 0 1 3781 271819337 271823117 0.000000e+00 6983.0
1 TraesCS3B01G220900 chr3B 100.000 1693 0 0 4073 5765 271823409 271825101 0.000000e+00 3127.0
2 TraesCS3B01G220900 chr3D 96.730 2997 50 15 64 3045 188813684 188816647 0.000000e+00 4948.0
3 TraesCS3B01G220900 chr3D 90.886 1580 55 28 4073 5563 188817156 188818735 0.000000e+00 2037.0
4 TraesCS3B01G220900 chr3D 92.357 314 11 3 3468 3781 188816831 188817131 8.870000e-118 435.0
5 TraesCS3B01G220900 chr3D 89.691 194 5 4 3224 3417 188816630 188816808 3.470000e-57 233.0
6 TraesCS3B01G220900 chr3D 95.775 71 3 0 1 71 188813591 188813661 1.310000e-21 115.0
7 TraesCS3B01G220900 chr3D 100.000 28 0 0 3359 3386 545971310 545971283 1.000000e-02 52.8
8 TraesCS3B01G220900 chr3A 95.000 3100 70 35 1 3045 247729118 247732187 0.000000e+00 4787.0
9 TraesCS3B01G220900 chr3A 90.853 1126 44 14 4171 5238 247733133 247734257 0.000000e+00 1454.0
10 TraesCS3B01G220900 chr3A 92.308 364 11 7 3414 3766 247732396 247732753 8.620000e-138 501.0
11 TraesCS3B01G220900 chr3A 90.615 309 16 4 5081 5376 247734422 247734730 1.160000e-106 398.0
12 TraesCS3B01G220900 chr3A 96.392 194 7 0 3224 3417 247732170 247732363 2.590000e-83 320.0
13 TraesCS3B01G220900 chr3A 93.210 162 7 2 5081 5238 247734259 247734420 9.660000e-58 235.0
14 TraesCS3B01G220900 chr2A 98.925 186 2 0 3038 3223 206443942 206443757 3.330000e-87 333.0
15 TraesCS3B01G220900 chr2A 97.368 190 5 0 3035 3224 385446613 385446424 2.000000e-84 324.0
16 TraesCS3B01G220900 chr1B 99.454 183 1 0 3042 3224 476332671 476332853 3.330000e-87 333.0
17 TraesCS3B01G220900 chr1B 96.154 104 3 1 5662 5765 524497752 524497854 9.930000e-38 169.0
18 TraesCS3B01G220900 chr5B 99.451 182 1 0 3043 3224 126245085 126245266 1.200000e-86 331.0
19 TraesCS3B01G220900 chr5B 97.143 105 2 1 5661 5765 707887483 707887586 5.940000e-40 176.0
20 TraesCS3B01G220900 chr1A 99.451 182 1 0 3043 3224 82525881 82526062 1.200000e-86 331.0
21 TraesCS3B01G220900 chr7B 98.919 185 1 1 3040 3224 55865150 55864967 4.310000e-86 329.0
22 TraesCS3B01G220900 chr7B 99.441 179 1 0 3046 3224 198551250 198551072 5.570000e-85 326.0
23 TraesCS3B01G220900 chr7B 96.491 114 4 0 5652 5765 285270869 285270982 7.630000e-44 189.0
24 TraesCS3B01G220900 chr7B 95.327 107 5 0 5659 5765 625728628 625728522 2.760000e-38 171.0
25 TraesCS3B01G220900 chr5A 97.396 192 3 2 3033 3224 2668878 2669067 5.570000e-85 326.0
26 TraesCS3B01G220900 chr6A 96.429 196 2 5 3030 3223 397525984 397526176 9.320000e-83 318.0
27 TraesCS3B01G220900 chr4A 97.143 105 3 0 5661 5765 71120916 71121020 1.650000e-40 178.0
28 TraesCS3B01G220900 chr4B 97.115 104 2 1 5662 5765 245468484 245468586 2.140000e-39 174.0
29 TraesCS3B01G220900 chr4B 97.115 104 2 1 5662 5765 245469377 245469479 2.140000e-39 174.0
30 TraesCS3B01G220900 chr4B 97.115 104 2 1 5662 5765 245471095 245471197 2.140000e-39 174.0
31 TraesCS3B01G220900 chr4B 96.226 106 3 1 5660 5765 166582030 166581926 7.680000e-39 172.0
32 TraesCS3B01G220900 chr7D 92.857 56 4 0 3358 3413 633070947 633070892 1.330000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G220900 chr3B 271819337 271825101 5764 False 5055.0 6983 100.0000 1 5765 2 chr3B.!!$F1 5764
1 TraesCS3B01G220900 chr3D 188813591 188818735 5144 False 1553.6 4948 93.0878 1 5563 5 chr3D.!!$F1 5562
2 TraesCS3B01G220900 chr3A 247729118 247734730 5612 False 1282.5 4787 93.0630 1 5376 6 chr3A.!!$F1 5375

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
740 782 0.109723 GGCAACAAGTGTCACCCCTA 59.890 55.000 0.0 0.0 0.00 3.53 F
991 1033 2.031163 ACGCCTCGCTTCTTTGCT 59.969 55.556 0.0 0.0 0.00 3.91 F
2679 2778 1.745232 TGAGCACTTTTGTCGGTGTT 58.255 45.000 0.0 0.0 36.03 3.32 F
3106 3205 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.0 0.0 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2465 2564 0.106521 AAACACTGCATTGTTGGGCC 59.893 50.000 21.48 0.0 39.70 5.80 R
2982 3081 5.583854 CAGTATCCCAGCATAATGTATGAGC 59.416 44.000 0.00 0.0 38.45 4.26 R
4641 4820 1.618837 TCTTCTCTGTGGTCCTTTCGG 59.381 52.381 0.00 0.0 0.00 4.30 R
4884 5078 1.134340 AGTTTACAACCGTGTCCAGCA 60.134 47.619 0.00 0.0 39.30 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 1.824842 GCCATGAATTCTCCATCCCCC 60.825 57.143 7.05 0.00 0.00 5.40
499 536 4.649674 TCTCACCTACTCTCTCTCTCTCTC 59.350 50.000 0.00 0.00 0.00 3.20
500 537 4.620723 TCACCTACTCTCTCTCTCTCTCT 58.379 47.826 0.00 0.00 0.00 3.10
501 538 4.649674 TCACCTACTCTCTCTCTCTCTCTC 59.350 50.000 0.00 0.00 0.00 3.20
502 539 4.651503 CACCTACTCTCTCTCTCTCTCTCT 59.348 50.000 0.00 0.00 0.00 3.10
553 590 2.093658 TCGTCTTTGCTAGGACCATTCC 60.094 50.000 4.93 0.00 43.22 3.01
664 703 6.124088 TGACTTGTTTCTTGCTCTTCTTTC 57.876 37.500 0.00 0.00 0.00 2.62
665 704 5.882557 TGACTTGTTTCTTGCTCTTCTTTCT 59.117 36.000 0.00 0.00 0.00 2.52
683 722 1.949525 TCTTTTGTGGCTGCTCAGTTC 59.050 47.619 0.00 0.00 0.00 3.01
684 723 1.000938 CTTTTGTGGCTGCTCAGTTCC 60.001 52.381 0.00 0.00 0.00 3.62
689 728 2.358003 GCTGCTCAGTTCCTGCGT 60.358 61.111 0.00 0.00 0.00 5.24
734 775 2.243957 CGCTCGGCAACAAGTGTCA 61.244 57.895 0.00 0.00 0.00 3.58
740 782 0.109723 GGCAACAAGTGTCACCCCTA 59.890 55.000 0.00 0.00 0.00 3.53
991 1033 2.031163 ACGCCTCGCTTCTTTGCT 59.969 55.556 0.00 0.00 0.00 3.91
1548 1602 3.699894 CTGTCCTGCGTCTGCCCT 61.700 66.667 0.00 0.00 41.78 5.19
1915 1970 6.824305 CTGGTTTCCAGTTGAGTTGAATAT 57.176 37.500 7.55 0.00 45.82 1.28
1916 1971 6.573664 TGGTTTCCAGTTGAGTTGAATATG 57.426 37.500 0.00 0.00 0.00 1.78
1917 1972 5.476599 TGGTTTCCAGTTGAGTTGAATATGG 59.523 40.000 0.00 0.00 0.00 2.74
1918 1973 5.402398 GTTTCCAGTTGAGTTGAATATGGC 58.598 41.667 0.00 0.00 0.00 4.40
1919 1974 4.299586 TCCAGTTGAGTTGAATATGGCA 57.700 40.909 0.00 0.00 0.00 4.92
1920 1975 4.661222 TCCAGTTGAGTTGAATATGGCAA 58.339 39.130 0.00 0.00 0.00 4.52
1921 1976 4.701651 TCCAGTTGAGTTGAATATGGCAAG 59.298 41.667 0.00 0.00 0.00 4.01
1922 1977 4.701651 CCAGTTGAGTTGAATATGGCAAGA 59.298 41.667 0.00 0.00 0.00 3.02
1923 1978 5.359009 CCAGTTGAGTTGAATATGGCAAGAT 59.641 40.000 0.00 0.00 0.00 2.40
1924 1979 6.127535 CCAGTTGAGTTGAATATGGCAAGATT 60.128 38.462 0.00 0.00 0.00 2.40
1925 1980 6.750501 CAGTTGAGTTGAATATGGCAAGATTG 59.249 38.462 0.00 0.00 0.00 2.67
2019 2091 6.564873 CGTTTGACAAAGAAATCCTGAGACTC 60.565 42.308 0.00 0.00 0.00 3.36
2121 2193 3.557824 CGTTCCACGCAAGGTACC 58.442 61.111 2.73 2.73 46.39 3.34
2139 2211 5.765182 AGGTACCAAGTTCTGTCTGATTTTG 59.235 40.000 15.94 0.00 0.00 2.44
2140 2212 5.048713 GGTACCAAGTTCTGTCTGATTTTGG 60.049 44.000 7.15 15.39 40.94 3.28
2141 2213 3.319122 ACCAAGTTCTGTCTGATTTTGGC 59.681 43.478 16.27 0.00 39.83 4.52
2142 2214 3.571401 CCAAGTTCTGTCTGATTTTGGCT 59.429 43.478 8.72 0.00 34.24 4.75
2181 2253 4.752101 GCTATATGGTTTCTAGGCACACAG 59.248 45.833 0.00 0.00 0.00 3.66
2202 2279 5.837979 ACAGCTAGTGGAGATGATTCATACT 59.162 40.000 0.00 2.37 44.86 2.12
2208 2285 7.673641 AGTGGAGATGATTCATACTTCTCTT 57.326 36.000 12.45 0.86 38.09 2.85
2211 2288 9.171877 GTGGAGATGATTCATACTTCTCTTTTT 57.828 33.333 12.45 0.00 38.09 1.94
2269 2368 6.734137 TCAAAATAGAAAGCATTTGACGTGT 58.266 32.000 0.00 0.00 39.27 4.49
2407 2506 4.752879 TGAACTACGGCCTGGCGC 62.753 66.667 13.40 0.00 0.00 6.53
2465 2564 2.041620 CCCATATGGTATGTTCCCAGGG 59.958 54.545 20.46 0.00 34.92 4.45
2679 2778 1.745232 TGAGCACTTTTGTCGGTGTT 58.255 45.000 0.00 0.00 36.03 3.32
2857 2956 5.640732 CCTCAAACTCATTTTGGTTATCCG 58.359 41.667 0.00 0.00 44.30 4.18
2898 2997 5.347635 TGTTAGTCCGAAAATGATGACTTCG 59.652 40.000 0.00 0.00 41.18 3.79
2982 3081 1.141881 CTGGTTCATCGTCTCCCCG 59.858 63.158 0.00 0.00 0.00 5.73
3049 3148 7.615582 TTTGAACATAGCTGACATTAGAAGG 57.384 36.000 0.00 0.00 0.00 3.46
3050 3149 5.674525 TGAACATAGCTGACATTAGAAGGG 58.325 41.667 0.00 0.00 0.00 3.95
3051 3150 4.696479 ACATAGCTGACATTAGAAGGGG 57.304 45.455 0.00 0.00 0.00 4.79
3052 3151 4.298626 ACATAGCTGACATTAGAAGGGGA 58.701 43.478 0.00 0.00 0.00 4.81
3053 3152 4.346418 ACATAGCTGACATTAGAAGGGGAG 59.654 45.833 0.00 0.00 0.00 4.30
3054 3153 1.488393 AGCTGACATTAGAAGGGGAGC 59.512 52.381 0.00 0.00 0.00 4.70
3055 3154 1.475930 GCTGACATTAGAAGGGGAGCC 60.476 57.143 0.00 0.00 0.00 4.70
3056 3155 2.122768 CTGACATTAGAAGGGGAGCCT 58.877 52.381 0.00 0.00 0.00 4.58
3057 3156 2.507471 CTGACATTAGAAGGGGAGCCTT 59.493 50.000 0.00 0.00 0.00 4.35
3058 3157 2.239654 TGACATTAGAAGGGGAGCCTTG 59.760 50.000 0.00 0.00 0.00 3.61
3059 3158 1.566231 ACATTAGAAGGGGAGCCTTGG 59.434 52.381 0.00 0.00 0.00 3.61
3060 3159 0.553333 ATTAGAAGGGGAGCCTTGGC 59.447 55.000 2.97 2.97 0.00 4.52
3061 3160 1.910580 TTAGAAGGGGAGCCTTGGCG 61.911 60.000 5.95 0.00 0.00 5.69
3069 3168 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
3070 3169 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
3071 3170 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
3072 3171 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
3073 3172 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
3074 3173 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
3075 3174 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
3080 3179 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
3081 3180 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
3082 3181 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
3083 3182 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
3084 3183 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
3085 3184 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
3086 3185 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
3087 3186 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
3088 3187 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
3089 3188 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
3090 3189 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
3091 3190 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
3092 3191 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
3093 3192 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
3094 3193 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
3104 3203 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
3105 3204 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
3106 3205 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
3107 3206 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
3108 3207 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
3109 3208 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
3110 3209 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
3111 3210 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
3112 3211 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
3113 3212 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
3114 3213 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
3115 3214 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
3116 3215 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
3117 3216 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
3118 3217 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
3132 3231 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
3133 3232 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
3134 3233 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
3135 3234 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
3136 3235 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
3137 3236 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
3138 3237 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
3139 3238 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
3140 3239 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
3141 3240 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
3142 3241 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
3143 3242 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
3144 3243 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
3145 3244 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
3146 3245 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
3147 3246 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
3148 3247 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
3149 3248 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
3150 3249 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
3151 3250 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
3152 3251 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
3153 3252 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
3154 3253 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
3155 3254 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
3156 3255 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
3157 3256 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
3158 3257 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
3159 3258 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
3160 3259 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
3161 3260 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
3162 3261 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
3163 3262 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
3164 3263 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
3165 3264 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
3166 3265 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
3167 3266 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
3168 3267 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
3169 3268 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
3174 3273 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3175 3274 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3176 3275 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3177 3276 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3178 3277 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3179 3278 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3180 3279 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3181 3280 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3182 3281 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
3189 3288 4.735599 GACCCTTCCCCGGACCCT 62.736 72.222 0.73 0.00 0.00 4.34
3216 3315 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
3217 3316 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
3218 3317 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
3219 3318 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
3220 3319 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
3221 3320 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
3229 3328 4.431131 CCGGGCTGCCCTGAACAT 62.431 66.667 33.39 0.00 42.67 2.71
3230 3329 2.589540 CGGGCTGCCCTGAACATA 59.410 61.111 33.39 0.00 42.67 2.29
3231 3330 1.524621 CGGGCTGCCCTGAACATAG 60.525 63.158 33.39 13.08 42.67 2.23
3232 3331 1.825622 GGGCTGCCCTGAACATAGC 60.826 63.158 30.42 0.00 41.34 2.97
3233 3332 1.225704 GGCTGCCCTGAACATAGCT 59.774 57.895 7.66 0.00 34.89 3.32
3234 3333 1.099879 GGCTGCCCTGAACATAGCTG 61.100 60.000 7.66 0.00 34.89 4.24
3235 3334 0.107508 GCTGCCCTGAACATAGCTGA 60.108 55.000 0.00 0.00 0.00 4.26
3236 3335 1.661341 CTGCCCTGAACATAGCTGAC 58.339 55.000 0.00 0.00 0.00 3.51
3237 3336 0.983467 TGCCCTGAACATAGCTGACA 59.017 50.000 0.00 0.00 0.00 3.58
3238 3337 1.561076 TGCCCTGAACATAGCTGACAT 59.439 47.619 0.00 0.00 0.00 3.06
3239 3338 2.025981 TGCCCTGAACATAGCTGACATT 60.026 45.455 0.00 0.00 0.00 2.71
3240 3339 3.199727 TGCCCTGAACATAGCTGACATTA 59.800 43.478 0.00 0.00 0.00 1.90
3247 3346 8.246180 CCTGAACATAGCTGACATTAACATTTT 58.754 33.333 0.00 0.00 0.00 1.82
3355 3454 7.394872 CGATGTGCACTTATTCTCTAAACTTC 58.605 38.462 19.41 0.00 0.00 3.01
3371 3470 0.961753 CTTCCCAACCCTGAACTTGC 59.038 55.000 0.00 0.00 0.00 4.01
3392 3491 3.751698 GCCACTCGGTTTAAGATTCAACT 59.248 43.478 0.00 0.00 33.28 3.16
3452 3587 3.199880 CTCACTGGAGTGGTTTTGACT 57.800 47.619 6.94 0.00 45.65 3.41
3453 3588 2.874701 CTCACTGGAGTGGTTTTGACTG 59.125 50.000 6.94 0.00 45.65 3.51
3455 3590 1.212935 ACTGGAGTGGTTTTGACTGCT 59.787 47.619 0.00 0.00 33.23 4.24
3456 3591 1.605710 CTGGAGTGGTTTTGACTGCTG 59.394 52.381 0.00 0.00 33.23 4.41
3457 3592 1.211703 TGGAGTGGTTTTGACTGCTGA 59.788 47.619 0.00 0.00 33.23 4.26
3458 3593 1.604278 GGAGTGGTTTTGACTGCTGAC 59.396 52.381 0.00 0.00 0.00 3.51
3459 3594 2.565841 GAGTGGTTTTGACTGCTGACT 58.434 47.619 0.00 0.00 0.00 3.41
3460 3595 2.289002 GAGTGGTTTTGACTGCTGACTG 59.711 50.000 0.00 0.00 0.00 3.51
3463 3606 1.476833 GGTTTTGACTGCTGACTGGGA 60.477 52.381 0.00 0.00 0.00 4.37
3480 3623 0.961019 GGACAGTGCCATTTCAGCAA 59.039 50.000 0.00 0.00 43.02 3.91
3494 3637 3.138884 TCAGCAAGTACAAGGAATGCA 57.861 42.857 0.00 0.00 39.42 3.96
3726 3873 8.767478 ATAAATTTTGCCAAACAGATTGAGAG 57.233 30.769 0.00 0.00 41.85 3.20
3727 3874 5.796424 ATTTTGCCAAACAGATTGAGAGT 57.204 34.783 0.00 0.00 41.85 3.24
3772 3919 7.330900 TGCAATTTTTGGTCACAATTTTGAT 57.669 28.000 0.00 0.00 36.29 2.57
3775 3922 7.255208 GCAATTTTTGGTCACAATTTTGATCCT 60.255 33.333 2.47 0.00 36.29 3.24
4121 4268 8.553459 TCTGGACTAATCTGAGAAAATTTCAC 57.447 34.615 8.55 2.26 0.00 3.18
4178 4325 9.303537 CAAATTTTGATTTCTGCAATTTTTGGT 57.696 25.926 2.88 0.00 31.21 3.67
4287 4434 7.281774 CACTATATTTGGCTGAACAGATTGAGT 59.718 37.037 5.97 0.00 0.00 3.41
4298 4445 7.137490 TGAACAGATTGAGTGATTCATCAAC 57.863 36.000 11.29 7.70 38.19 3.18
4300 4447 7.229106 TGAACAGATTGAGTGATTCATCAACAA 59.771 33.333 11.29 10.85 38.19 2.83
4421 4579 3.261981 ACTTCAGTGAGTCAAAACCGT 57.738 42.857 0.00 0.00 0.00 4.83
4467 4646 8.779354 AATGTTGAGGTCAAGTATCTTAGTTC 57.221 34.615 0.00 0.00 36.39 3.01
4641 4820 1.003233 GAGGCAGTCCCTGGTGAAC 60.003 63.158 0.00 0.00 46.60 3.18
4644 4823 2.879233 GCAGTCCCTGGTGAACCGA 61.879 63.158 0.00 0.00 39.43 4.69
4792 4977 0.322546 ATTTCGCCCTTGTGACTCCC 60.323 55.000 0.00 0.00 0.00 4.30
4826 5016 2.276732 AATTGATATGCCTCCCACGG 57.723 50.000 0.00 0.00 0.00 4.94
4844 5034 4.000620 TCAGCCACCCCCTCCGTA 62.001 66.667 0.00 0.00 0.00 4.02
4845 5035 3.006728 CAGCCACCCCCTCCGTAA 61.007 66.667 0.00 0.00 0.00 3.18
4846 5036 2.687566 AGCCACCCCCTCCGTAAG 60.688 66.667 0.00 0.00 0.00 2.34
4847 5037 3.007323 GCCACCCCCTCCGTAAGT 61.007 66.667 0.00 0.00 0.00 2.24
4848 5038 2.599757 GCCACCCCCTCCGTAAGTT 61.600 63.158 0.00 0.00 0.00 2.66
4849 5039 1.298667 CCACCCCCTCCGTAAGTTG 59.701 63.158 0.00 0.00 0.00 3.16
4884 5078 1.184970 CGGGGTGGCAAATTCTGGTT 61.185 55.000 0.00 0.00 0.00 3.67
4980 5176 1.656441 CAGTCTGCGCCTTTTTGCT 59.344 52.632 4.18 0.00 0.00 3.91
4985 5181 0.039256 CTGCGCCTTTTTGCTTGCTA 60.039 50.000 4.18 0.00 0.00 3.49
5164 5544 1.941668 GCCTGAACTGGACACTGTAGC 60.942 57.143 2.01 0.00 0.00 3.58
5185 5565 3.646637 GCCACCTAATATGTGTAGGAGGT 59.353 47.826 13.76 0.00 46.03 3.85
5234 5614 3.703001 TTGAGAGGCAAGGAAAGTAGG 57.297 47.619 0.00 0.00 31.55 3.18
5308 5860 8.567948 AGAATACAAGTTTGTTACAATCAGGTG 58.432 33.333 2.46 6.12 42.35 4.00
5386 5938 1.079405 TTCAATCTGTCGGCCCGTC 60.079 57.895 1.63 0.00 0.00 4.79
5419 5974 5.946377 GGTAAATCCATCAACAACTTCCTCT 59.054 40.000 0.00 0.00 35.97 3.69
5421 5976 4.647564 ATCCATCAACAACTTCCTCTGT 57.352 40.909 0.00 0.00 0.00 3.41
5479 6034 8.262227 TCAACTCTTTCTCTAACAAAGTGGTAA 58.738 33.333 0.00 0.00 33.32 2.85
5498 6054 7.447374 TGGTAATCCACTTCTATGTGTTTTG 57.553 36.000 0.00 0.00 39.03 2.44
5563 6119 7.074366 TCCAATATTATCCCACCATAACCTTGA 59.926 37.037 0.00 0.00 0.00 3.02
5564 6120 7.394359 CCAATATTATCCCACCATAACCTTGAG 59.606 40.741 0.00 0.00 0.00 3.02
5565 6121 7.888514 ATATTATCCCACCATAACCTTGAGA 57.111 36.000 0.00 0.00 0.00 3.27
5566 6122 5.630415 TTATCCCACCATAACCTTGAGAG 57.370 43.478 0.00 0.00 0.00 3.20
5567 6123 3.199442 TCCCACCATAACCTTGAGAGA 57.801 47.619 0.00 0.00 0.00 3.10
5568 6124 3.736094 TCCCACCATAACCTTGAGAGAT 58.264 45.455 0.00 0.00 0.00 2.75
5569 6125 4.111577 TCCCACCATAACCTTGAGAGATT 58.888 43.478 0.00 0.00 0.00 2.40
5570 6126 5.285401 TCCCACCATAACCTTGAGAGATTA 58.715 41.667 0.00 0.00 0.00 1.75
5571 6127 5.366768 TCCCACCATAACCTTGAGAGATTAG 59.633 44.000 0.00 0.00 0.00 1.73
5572 6128 5.366768 CCCACCATAACCTTGAGAGATTAGA 59.633 44.000 0.00 0.00 0.00 2.10
5573 6129 6.043706 CCCACCATAACCTTGAGAGATTAGAT 59.956 42.308 0.00 0.00 0.00 1.98
5574 6130 7.158021 CCACCATAACCTTGAGAGATTAGATC 58.842 42.308 0.00 0.00 0.00 2.75
5575 6131 7.158021 CACCATAACCTTGAGAGATTAGATCC 58.842 42.308 0.00 0.00 0.00 3.36
5576 6132 6.846505 ACCATAACCTTGAGAGATTAGATCCA 59.153 38.462 0.00 0.00 0.00 3.41
5577 6133 7.158021 CCATAACCTTGAGAGATTAGATCCAC 58.842 42.308 0.00 0.00 0.00 4.02
5578 6134 7.202038 CCATAACCTTGAGAGATTAGATCCACA 60.202 40.741 0.00 0.00 0.00 4.17
5579 6135 6.821616 AACCTTGAGAGATTAGATCCACAT 57.178 37.500 0.00 0.00 0.00 3.21
5580 6136 7.921041 AACCTTGAGAGATTAGATCCACATA 57.079 36.000 0.00 0.00 0.00 2.29
5581 6137 7.921041 ACCTTGAGAGATTAGATCCACATAA 57.079 36.000 0.00 0.00 0.00 1.90
5582 6138 7.731054 ACCTTGAGAGATTAGATCCACATAAC 58.269 38.462 0.00 0.00 0.00 1.89
5583 6139 7.566879 ACCTTGAGAGATTAGATCCACATAACT 59.433 37.037 0.00 0.00 0.00 2.24
5584 6140 8.428063 CCTTGAGAGATTAGATCCACATAACTT 58.572 37.037 0.00 0.00 0.00 2.66
5585 6141 9.474920 CTTGAGAGATTAGATCCACATAACTTC 57.525 37.037 0.00 0.00 0.00 3.01
5586 6142 8.774546 TGAGAGATTAGATCCACATAACTTCT 57.225 34.615 0.00 0.00 0.00 2.85
5587 6143 8.637099 TGAGAGATTAGATCCACATAACTTCTG 58.363 37.037 0.00 0.00 0.00 3.02
5588 6144 8.546083 AGAGATTAGATCCACATAACTTCTGT 57.454 34.615 0.00 0.00 0.00 3.41
5589 6145 8.986991 AGAGATTAGATCCACATAACTTCTGTT 58.013 33.333 0.00 0.00 39.98 3.16
5590 6146 8.954950 AGATTAGATCCACATAACTTCTGTTG 57.045 34.615 0.00 0.00 37.59 3.33
5591 6147 8.543774 AGATTAGATCCACATAACTTCTGTTGT 58.456 33.333 0.00 0.00 37.59 3.32
5592 6148 7.905604 TTAGATCCACATAACTTCTGTTGTG 57.094 36.000 4.55 4.55 46.33 3.33
5594 6150 3.146066 TCCACATAACTTCTGTTGTGGC 58.854 45.455 14.51 0.00 46.69 5.01
5595 6151 2.095768 CCACATAACTTCTGTTGTGGCG 60.096 50.000 7.90 2.12 43.69 5.69
5596 6152 2.548057 CACATAACTTCTGTTGTGGCGT 59.452 45.455 9.67 0.00 45.56 5.68
5597 6153 3.003275 CACATAACTTCTGTTGTGGCGTT 59.997 43.478 9.67 0.00 45.56 4.84
5598 6154 3.003275 ACATAACTTCTGTTGTGGCGTTG 59.997 43.478 9.67 0.00 45.56 4.10
5599 6155 0.738389 AACTTCTGTTGTGGCGTTGG 59.262 50.000 0.00 0.00 34.71 3.77
5600 6156 1.008538 CTTCTGTTGTGGCGTTGGC 60.009 57.895 0.00 0.00 38.90 4.52
5610 6166 4.633980 GCGTTGGCCAAGTCTTTG 57.366 55.556 21.21 5.93 0.00 2.77
5611 6167 1.733526 GCGTTGGCCAAGTCTTTGT 59.266 52.632 21.21 0.00 32.21 2.83
5612 6168 0.948678 GCGTTGGCCAAGTCTTTGTA 59.051 50.000 21.21 0.00 32.21 2.41
5613 6169 1.539827 GCGTTGGCCAAGTCTTTGTAT 59.460 47.619 21.21 0.00 32.21 2.29
5614 6170 2.030274 GCGTTGGCCAAGTCTTTGTATT 60.030 45.455 21.21 0.00 32.21 1.89
5615 6171 3.821841 CGTTGGCCAAGTCTTTGTATTC 58.178 45.455 21.21 0.83 32.21 1.75
5616 6172 3.502211 CGTTGGCCAAGTCTTTGTATTCT 59.498 43.478 21.21 0.00 32.21 2.40
5617 6173 4.693566 CGTTGGCCAAGTCTTTGTATTCTA 59.306 41.667 21.21 0.00 32.21 2.10
5618 6174 5.390567 CGTTGGCCAAGTCTTTGTATTCTAC 60.391 44.000 21.21 0.00 32.21 2.59
5619 6175 5.499004 TGGCCAAGTCTTTGTATTCTACT 57.501 39.130 0.61 0.00 32.21 2.57
5620 6176 5.876357 TGGCCAAGTCTTTGTATTCTACTT 58.124 37.500 0.61 0.00 32.21 2.24
5621 6177 5.705441 TGGCCAAGTCTTTGTATTCTACTTG 59.295 40.000 0.61 0.00 44.15 3.16
5622 6178 5.938125 GGCCAAGTCTTTGTATTCTACTTGA 59.062 40.000 13.52 0.00 46.29 3.02
5623 6179 6.128254 GGCCAAGTCTTTGTATTCTACTTGAC 60.128 42.308 13.52 3.66 46.29 3.18
5624 6180 6.651225 GCCAAGTCTTTGTATTCTACTTGACT 59.349 38.462 13.52 0.00 46.29 3.41
5625 6181 7.173390 GCCAAGTCTTTGTATTCTACTTGACTT 59.827 37.037 13.52 0.00 46.29 3.01
5626 6182 8.499162 CCAAGTCTTTGTATTCTACTTGACTTG 58.501 37.037 19.38 19.38 46.29 3.16
5627 6183 7.659652 AGTCTTTGTATTCTACTTGACTTGC 57.340 36.000 0.00 0.00 33.28 4.01
5628 6184 7.217200 AGTCTTTGTATTCTACTTGACTTGCA 58.783 34.615 0.00 0.00 33.28 4.08
5629 6185 7.715249 AGTCTTTGTATTCTACTTGACTTGCAA 59.285 33.333 0.00 0.00 33.28 4.08
5630 6186 8.342634 GTCTTTGTATTCTACTTGACTTGCAAA 58.657 33.333 0.00 0.00 35.74 3.68
5631 6187 9.066892 TCTTTGTATTCTACTTGACTTGCAAAT 57.933 29.630 0.00 0.00 35.74 2.32
5632 6188 9.683069 CTTTGTATTCTACTTGACTTGCAAATT 57.317 29.630 0.00 0.00 35.74 1.82
5633 6189 9.462174 TTTGTATTCTACTTGACTTGCAAATTG 57.538 29.630 0.00 0.00 35.74 2.32
5634 6190 8.165239 TGTATTCTACTTGACTTGCAAATTGT 57.835 30.769 0.00 0.00 35.74 2.71
5635 6191 8.629158 TGTATTCTACTTGACTTGCAAATTGTT 58.371 29.630 0.00 0.00 35.74 2.83
5636 6192 7.935338 ATTCTACTTGACTTGCAAATTGTTG 57.065 32.000 0.00 0.00 35.74 3.33
5649 6205 3.477899 AATTGTTGCTCGCTTTCTAGC 57.522 42.857 0.00 0.00 44.21 3.42
5664 6220 7.911362 GCTTTCTAGCATTCAATGAAATCTC 57.089 36.000 0.00 0.00 46.95 2.75
5665 6221 7.705214 GCTTTCTAGCATTCAATGAAATCTCT 58.295 34.615 0.00 0.00 46.95 3.10
5666 6222 7.856894 GCTTTCTAGCATTCAATGAAATCTCTC 59.143 37.037 0.00 0.00 46.95 3.20
5667 6223 7.798596 TTCTAGCATTCAATGAAATCTCTCC 57.201 36.000 0.00 0.00 0.00 3.71
5668 6224 6.294473 TCTAGCATTCAATGAAATCTCTCCC 58.706 40.000 0.00 0.00 0.00 4.30
5669 6225 5.126699 AGCATTCAATGAAATCTCTCCCT 57.873 39.130 0.00 0.00 0.00 4.20
5670 6226 6.257994 AGCATTCAATGAAATCTCTCCCTA 57.742 37.500 0.00 0.00 0.00 3.53
5671 6227 6.666678 AGCATTCAATGAAATCTCTCCCTAA 58.333 36.000 0.00 0.00 0.00 2.69
5672 6228 7.296098 AGCATTCAATGAAATCTCTCCCTAAT 58.704 34.615 0.00 0.00 0.00 1.73
5673 6229 8.443176 AGCATTCAATGAAATCTCTCCCTAATA 58.557 33.333 0.00 0.00 0.00 0.98
5674 6230 9.071276 GCATTCAATGAAATCTCTCCCTAATAA 57.929 33.333 0.00 0.00 0.00 1.40
5682 6238 9.561069 TGAAATCTCTCCCTAATAATAAAGCAC 57.439 33.333 0.00 0.00 0.00 4.40
5683 6239 8.608844 AAATCTCTCCCTAATAATAAAGCACG 57.391 34.615 0.00 0.00 0.00 5.34
5684 6240 6.097915 TCTCTCCCTAATAATAAAGCACGG 57.902 41.667 0.00 0.00 0.00 4.94
5685 6241 5.836898 TCTCTCCCTAATAATAAAGCACGGA 59.163 40.000 0.00 0.00 0.00 4.69
5686 6242 6.497259 TCTCTCCCTAATAATAAAGCACGGAT 59.503 38.462 0.00 0.00 0.00 4.18
5687 6243 7.016268 TCTCTCCCTAATAATAAAGCACGGATT 59.984 37.037 0.00 0.00 0.00 3.01
5688 6244 6.934645 TCTCCCTAATAATAAAGCACGGATTG 59.065 38.462 0.00 0.00 0.00 2.67
5689 6245 6.001460 TCCCTAATAATAAAGCACGGATTGG 58.999 40.000 0.00 0.00 0.00 3.16
5690 6246 5.183140 CCCTAATAATAAAGCACGGATTGGG 59.817 44.000 0.00 0.00 0.00 4.12
5691 6247 5.768164 CCTAATAATAAAGCACGGATTGGGT 59.232 40.000 0.00 0.00 0.00 4.51
5692 6248 5.767816 AATAATAAAGCACGGATTGGGTC 57.232 39.130 0.00 0.00 0.00 4.46
5693 6249 3.366052 AATAAAGCACGGATTGGGTCT 57.634 42.857 0.00 0.00 0.00 3.85
5694 6250 2.396590 TAAAGCACGGATTGGGTCTC 57.603 50.000 0.00 0.00 0.00 3.36
5695 6251 0.322546 AAAGCACGGATTGGGTCTCC 60.323 55.000 0.00 0.00 0.00 3.71
5701 6257 3.708013 GGATTGGGTCTCCGGATTC 57.292 57.895 3.57 0.25 35.24 2.52
5702 6258 0.837272 GGATTGGGTCTCCGGATTCA 59.163 55.000 3.57 0.00 35.24 2.57
5703 6259 1.475213 GGATTGGGTCTCCGGATTCAC 60.475 57.143 3.57 2.50 35.24 3.18
5704 6260 0.546598 ATTGGGTCTCCGGATTCACC 59.453 55.000 3.57 11.80 35.24 4.02
5720 6276 2.202083 CCGTCGCGGCGTTTTTAC 60.202 61.111 32.48 11.55 41.17 2.01
5721 6277 2.545339 CGTCGCGGCGTTTTTACA 59.455 55.556 27.25 0.00 0.00 2.41
5722 6278 1.785533 CGTCGCGGCGTTTTTACAC 60.786 57.895 27.25 10.05 0.00 2.90
5723 6279 1.276250 GTCGCGGCGTTTTTACACA 59.724 52.632 22.90 0.00 0.00 3.72
5724 6280 0.316032 GTCGCGGCGTTTTTACACAA 60.316 50.000 22.90 0.00 0.00 3.33
5725 6281 0.376152 TCGCGGCGTTTTTACACAAA 59.624 45.000 22.90 0.00 0.00 2.83
5726 6282 0.767687 CGCGGCGTTTTTACACAAAG 59.232 50.000 15.36 0.00 0.00 2.77
5727 6283 1.125270 GCGGCGTTTTTACACAAAGG 58.875 50.000 9.37 0.00 0.00 3.11
5728 6284 1.534385 GCGGCGTTTTTACACAAAGGT 60.534 47.619 9.37 0.00 0.00 3.50
5729 6285 2.377880 CGGCGTTTTTACACAAAGGTC 58.622 47.619 0.00 0.00 0.00 3.85
5730 6286 2.734670 GGCGTTTTTACACAAAGGTCC 58.265 47.619 0.00 0.00 0.00 4.46
5731 6287 2.544277 GGCGTTTTTACACAAAGGTCCC 60.544 50.000 0.00 0.00 0.00 4.46
5732 6288 2.359848 GCGTTTTTACACAAAGGTCCCT 59.640 45.455 0.00 0.00 0.00 4.20
5733 6289 3.181484 GCGTTTTTACACAAAGGTCCCTT 60.181 43.478 0.00 0.00 37.98 3.95
5734 6290 4.678574 GCGTTTTTACACAAAGGTCCCTTT 60.679 41.667 5.47 5.47 45.98 3.11
5735 6291 5.450274 GCGTTTTTACACAAAGGTCCCTTTA 60.450 40.000 10.86 0.00 43.56 1.85
5736 6292 6.736519 GCGTTTTTACACAAAGGTCCCTTTAT 60.737 38.462 10.86 0.00 43.56 1.40
5737 6293 7.204604 CGTTTTTACACAAAGGTCCCTTTATT 58.795 34.615 10.86 0.00 43.56 1.40
5738 6294 7.707464 CGTTTTTACACAAAGGTCCCTTTATTT 59.293 33.333 10.86 0.00 43.56 1.40
5739 6295 9.386010 GTTTTTACACAAAGGTCCCTTTATTTT 57.614 29.630 10.86 0.08 43.56 1.82
5740 6296 9.961264 TTTTTACACAAAGGTCCCTTTATTTTT 57.039 25.926 10.86 0.00 43.56 1.94
5760 6316 5.570234 TTTTTATATTGAACCCGCACTCC 57.430 39.130 0.00 0.00 0.00 3.85
5761 6317 2.922740 TATATTGAACCCGCACTCCC 57.077 50.000 0.00 0.00 0.00 4.30
5762 6318 1.213296 ATATTGAACCCGCACTCCCT 58.787 50.000 0.00 0.00 0.00 4.20
5763 6319 1.868713 TATTGAACCCGCACTCCCTA 58.131 50.000 0.00 0.00 0.00 3.53
5764 6320 0.252197 ATTGAACCCGCACTCCCTAC 59.748 55.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.409371 GGAGAGGATTTTTGTTGATAGGAATTC 58.591 37.037 0.00 0.00 0.00 2.17
60 61 1.130678 GGGGCCAATAGAGAGAGGGG 61.131 65.000 4.39 0.00 0.00 4.79
499 536 5.154418 AGGGATCTTGGAAGGAGATAAGAG 58.846 45.833 0.00 0.00 34.13 2.85
500 537 5.163259 AGGGATCTTGGAAGGAGATAAGA 57.837 43.478 0.00 0.00 34.13 2.10
501 538 5.903198 AAGGGATCTTGGAAGGAGATAAG 57.097 43.478 0.00 0.00 34.13 1.73
502 539 6.658555 AAAAGGGATCTTGGAAGGAGATAA 57.341 37.500 0.00 0.00 34.13 1.75
553 590 3.077484 TGGAGCCAAGGAAAGATCAAG 57.923 47.619 0.00 0.00 0.00 3.02
664 703 1.000938 GGAACTGAGCAGCCACAAAAG 60.001 52.381 0.00 0.00 0.00 2.27
665 704 1.032014 GGAACTGAGCAGCCACAAAA 58.968 50.000 0.00 0.00 0.00 2.44
689 728 0.173481 CTCGGATTGAAGCGGAGACA 59.827 55.000 11.89 0.00 35.47 3.41
734 775 2.365237 GCCCGGAGAAGTAGGGGT 60.365 66.667 0.73 0.00 45.18 4.95
740 782 0.175989 GAATCGAAGCCCGGAGAAGT 59.824 55.000 0.73 0.00 39.14 3.01
1340 1394 1.002134 CACCTTTCCCGCATGGACT 60.002 57.895 0.00 0.00 45.11 3.85
1548 1602 2.347114 CGCATCCAGGACACCACA 59.653 61.111 0.00 0.00 0.00 4.17
1918 1973 5.066117 ACATGAACAGCTATCTGCAATCTTG 59.934 40.000 0.00 2.28 44.10 3.02
1919 1974 5.191426 ACATGAACAGCTATCTGCAATCTT 58.809 37.500 0.00 0.00 44.10 2.40
1920 1975 4.778579 ACATGAACAGCTATCTGCAATCT 58.221 39.130 0.00 0.00 44.10 2.40
1921 1976 5.496133 AACATGAACAGCTATCTGCAATC 57.504 39.130 0.00 0.00 44.10 2.67
1922 1977 4.337555 GGAACATGAACAGCTATCTGCAAT 59.662 41.667 0.00 0.00 44.10 3.56
1923 1978 3.691118 GGAACATGAACAGCTATCTGCAA 59.309 43.478 0.00 0.00 44.10 4.08
1924 1979 3.054875 AGGAACATGAACAGCTATCTGCA 60.055 43.478 0.00 0.00 44.10 4.41
1925 1980 3.539604 AGGAACATGAACAGCTATCTGC 58.460 45.455 0.00 0.00 44.10 4.26
1926 1981 4.809958 CAGAGGAACATGAACAGCTATCTG 59.190 45.833 0.00 0.00 45.71 2.90
1927 1982 4.141756 CCAGAGGAACATGAACAGCTATCT 60.142 45.833 0.00 0.00 0.00 1.98
1928 1983 4.125703 CCAGAGGAACATGAACAGCTATC 58.874 47.826 0.00 0.00 0.00 2.08
1929 1984 3.118112 CCCAGAGGAACATGAACAGCTAT 60.118 47.826 0.00 0.00 33.47 2.97
1930 1985 2.237143 CCCAGAGGAACATGAACAGCTA 59.763 50.000 0.00 0.00 33.47 3.32
1931 1986 1.004044 CCCAGAGGAACATGAACAGCT 59.996 52.381 0.00 0.00 33.47 4.24
1932 1987 1.457346 CCCAGAGGAACATGAACAGC 58.543 55.000 0.00 0.00 33.47 4.40
1933 1988 1.004044 AGCCCAGAGGAACATGAACAG 59.996 52.381 0.00 0.00 33.47 3.16
2019 2091 3.185594 CCATGCTGCAAAACAAACATGAG 59.814 43.478 6.36 0.00 41.91 2.90
2121 2193 4.843220 AGCCAAAATCAGACAGAACTTG 57.157 40.909 0.00 0.00 0.00 3.16
2139 2211 6.867662 ATAGCATGTTCACAGTTTATAGCC 57.132 37.500 0.00 0.00 0.00 3.93
2140 2212 8.446273 CCATATAGCATGTTCACAGTTTATAGC 58.554 37.037 0.00 0.00 0.00 2.97
2141 2213 9.494271 ACCATATAGCATGTTCACAGTTTATAG 57.506 33.333 0.00 0.00 0.00 1.31
2142 2214 9.845740 AACCATATAGCATGTTCACAGTTTATA 57.154 29.630 0.00 0.00 0.00 0.98
2181 2253 6.991938 AGAAGTATGAATCATCTCCACTAGC 58.008 40.000 0.00 0.00 0.00 3.42
2212 2289 7.879677 TCAGATAGAGAACTTGAGATGCAAAAA 59.120 33.333 0.00 0.00 35.74 1.94
2407 2506 6.538021 CCTTCTCCACTGAATCTCAATGTTAG 59.462 42.308 0.00 0.00 0.00 2.34
2465 2564 0.106521 AAACACTGCATTGTTGGGCC 59.893 50.000 21.48 0.00 39.70 5.80
2545 2644 9.540538 AGCAGTATAATACTCCTCATCACTATT 57.459 33.333 0.00 0.00 36.76 1.73
2857 2956 7.908601 CGGACTAACACTTTCCATTTAATAAGC 59.091 37.037 0.00 0.00 0.00 3.09
2982 3081 5.583854 CAGTATCCCAGCATAATGTATGAGC 59.416 44.000 0.00 0.00 38.45 4.26
3051 3150 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
3052 3151 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
3053 3152 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
3054 3153 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
3055 3154 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
3056 3155 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
3057 3156 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
3058 3157 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
3062 3161 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
3063 3162 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
3064 3163 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
3065 3164 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
3066 3165 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
3067 3166 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
3068 3167 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
3069 3168 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
3070 3169 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
3071 3170 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
3072 3171 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
3073 3172 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
3074 3173 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
3075 3174 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
3076 3175 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
3077 3176 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
3088 3187 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
3089 3188 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
3090 3189 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
3091 3190 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
3092 3191 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
3093 3192 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
3094 3193 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
3095 3194 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
3096 3195 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
3097 3196 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
3098 3197 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
3099 3198 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
3100 3199 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
3101 3200 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
3102 3201 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
3103 3202 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
3104 3203 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
3105 3204 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
3106 3205 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
3107 3206 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
3108 3207 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
3109 3208 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
3110 3209 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
3122 3221 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
3123 3222 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
3124 3223 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
3125 3224 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
3126 3225 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
3127 3226 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
3128 3227 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
3129 3228 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
3130 3229 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
3131 3230 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
3132 3231 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
3133 3232 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
3134 3233 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
3135 3234 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
3136 3235 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
3137 3236 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
3138 3237 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
3139 3238 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
3140 3239 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
3141 3240 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
3142 3241 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
3143 3242 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
3144 3243 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
3145 3244 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
3146 3245 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
3147 3246 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
3148 3247 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
3158 3257 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3159 3258 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3160 3259 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3161 3260 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3162 3261 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3163 3262 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3164 3263 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3165 3264 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
3172 3271 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
3188 3287 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3191 3290 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3192 3291 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3193 3292 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3194 3293 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3200 3299 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
3201 3300 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
3202 3301 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
3203 3302 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
3204 3303 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
3214 3313 1.825622 GCTATGTTCAGGGCAGCCC 60.826 63.158 24.90 24.90 45.90 5.19
3215 3314 1.099879 CAGCTATGTTCAGGGCAGCC 61.100 60.000 1.26 1.26 32.58 4.85
3216 3315 0.107508 TCAGCTATGTTCAGGGCAGC 60.108 55.000 0.00 0.00 0.00 5.25
3217 3316 1.065926 TGTCAGCTATGTTCAGGGCAG 60.066 52.381 0.00 0.00 0.00 4.85
3218 3317 0.983467 TGTCAGCTATGTTCAGGGCA 59.017 50.000 0.00 0.00 0.00 5.36
3219 3318 2.338577 ATGTCAGCTATGTTCAGGGC 57.661 50.000 0.00 0.00 0.00 5.19
3220 3319 5.185454 TGTTAATGTCAGCTATGTTCAGGG 58.815 41.667 0.00 0.00 0.00 4.45
3221 3320 6.932356 ATGTTAATGTCAGCTATGTTCAGG 57.068 37.500 0.00 0.00 0.00 3.86
3222 3321 9.630098 AAAAATGTTAATGTCAGCTATGTTCAG 57.370 29.630 0.00 0.00 0.00 3.02
3223 3322 9.409312 CAAAAATGTTAATGTCAGCTATGTTCA 57.591 29.630 0.00 0.00 0.00 3.18
3224 3323 9.410556 ACAAAAATGTTAATGTCAGCTATGTTC 57.589 29.630 0.00 0.00 0.00 3.18
3225 3324 9.195411 CACAAAAATGTTAATGTCAGCTATGTT 57.805 29.630 0.00 0.00 0.00 2.71
3226 3325 8.575589 TCACAAAAATGTTAATGTCAGCTATGT 58.424 29.630 0.00 0.00 0.00 2.29
3227 3326 8.969121 TCACAAAAATGTTAATGTCAGCTATG 57.031 30.769 0.00 0.00 0.00 2.23
3228 3327 8.796475 ACTCACAAAAATGTTAATGTCAGCTAT 58.204 29.630 0.00 0.00 0.00 2.97
3229 3328 8.075574 CACTCACAAAAATGTTAATGTCAGCTA 58.924 33.333 0.00 0.00 0.00 3.32
3230 3329 6.919662 CACTCACAAAAATGTTAATGTCAGCT 59.080 34.615 0.00 0.00 0.00 4.24
3231 3330 6.346040 GCACTCACAAAAATGTTAATGTCAGC 60.346 38.462 0.00 0.00 0.00 4.26
3232 3331 6.919662 AGCACTCACAAAAATGTTAATGTCAG 59.080 34.615 0.00 0.00 0.00 3.51
3233 3332 6.804677 AGCACTCACAAAAATGTTAATGTCA 58.195 32.000 0.00 0.00 0.00 3.58
3234 3333 7.222611 ACAAGCACTCACAAAAATGTTAATGTC 59.777 33.333 0.00 0.00 0.00 3.06
3235 3334 7.041107 ACAAGCACTCACAAAAATGTTAATGT 58.959 30.769 0.00 0.00 0.00 2.71
3236 3335 7.467557 ACAAGCACTCACAAAAATGTTAATG 57.532 32.000 0.00 0.00 0.00 1.90
3237 3336 7.224557 GGAACAAGCACTCACAAAAATGTTAAT 59.775 33.333 0.00 0.00 30.58 1.40
3238 3337 6.533367 GGAACAAGCACTCACAAAAATGTTAA 59.467 34.615 0.00 0.00 30.58 2.01
3239 3338 6.039616 GGAACAAGCACTCACAAAAATGTTA 58.960 36.000 0.00 0.00 30.58 2.41
3240 3339 4.869861 GGAACAAGCACTCACAAAAATGTT 59.130 37.500 0.00 0.00 32.89 2.71
3317 3416 6.539649 AGTGCACATCGCGTATAATAAAAT 57.460 33.333 21.04 0.00 46.97 1.82
3329 3428 5.292101 AGTTTAGAGAATAAGTGCACATCGC 59.708 40.000 21.04 12.75 42.89 4.58
3355 3454 1.152567 TGGCAAGTTCAGGGTTGGG 60.153 57.895 0.00 0.00 0.00 4.12
3371 3470 4.392138 GGAGTTGAATCTTAAACCGAGTGG 59.608 45.833 0.00 0.00 42.84 4.00
3392 3491 3.611970 TCGACTGGTTTTGAAGTTTGGA 58.388 40.909 0.00 0.00 0.00 3.53
3452 3587 2.427320 GCACTGTCCCAGTCAGCA 59.573 61.111 0.00 0.00 43.43 4.41
3453 3588 2.359230 GGCACTGTCCCAGTCAGC 60.359 66.667 0.00 0.00 43.43 4.26
3455 3590 0.478072 AAATGGCACTGTCCCAGTCA 59.522 50.000 0.00 0.00 43.43 3.41
3456 3591 1.168714 GAAATGGCACTGTCCCAGTC 58.831 55.000 0.00 0.00 43.43 3.51
3457 3592 0.478072 TGAAATGGCACTGTCCCAGT 59.522 50.000 0.00 0.00 46.51 4.00
3458 3593 1.171308 CTGAAATGGCACTGTCCCAG 58.829 55.000 0.00 0.00 35.48 4.45
3459 3594 0.895100 GCTGAAATGGCACTGTCCCA 60.895 55.000 0.00 0.00 36.66 4.37
3460 3595 0.895100 TGCTGAAATGGCACTGTCCC 60.895 55.000 0.00 0.00 34.56 4.46
3463 3606 1.696063 ACTTGCTGAAATGGCACTGT 58.304 45.000 0.00 0.00 39.55 3.55
3473 3616 3.485394 TGCATTCCTTGTACTTGCTGAA 58.515 40.909 0.00 0.00 34.47 3.02
3480 3623 6.899393 TTCAGATTTTGCATTCCTTGTACT 57.101 33.333 0.00 0.00 0.00 2.73
3494 3637 9.350357 CGATGATCTGTGAAAATTTCAGATTTT 57.650 29.630 17.34 10.74 45.21 1.82
3650 3794 7.028962 TGCTATGCTTAATGTTGTGTCATTTC 58.971 34.615 0.00 0.00 38.68 2.17
3653 3797 6.095860 ACATGCTATGCTTAATGTTGTGTCAT 59.904 34.615 0.00 0.00 28.99 3.06
3655 3799 5.883661 ACATGCTATGCTTAATGTTGTGTC 58.116 37.500 0.00 0.00 28.99 3.67
3726 3873 7.863666 TGCAGGAATTGAATTTTTGATGAAAC 58.136 30.769 6.74 0.00 0.00 2.78
3727 3874 8.447924 TTGCAGGAATTGAATTTTTGATGAAA 57.552 26.923 6.74 0.00 0.00 2.69
4072 4219 8.092687 AGATGCTATGTTTGATTTTCAGCTTTT 58.907 29.630 0.00 0.00 0.00 2.27
4073 4220 7.544566 CAGATGCTATGTTTGATTTTCAGCTTT 59.455 33.333 0.00 0.00 0.00 3.51
4074 4221 7.033791 CAGATGCTATGTTTGATTTTCAGCTT 58.966 34.615 0.00 0.00 0.00 3.74
4075 4222 6.405508 CCAGATGCTATGTTTGATTTTCAGCT 60.406 38.462 0.00 0.00 0.00 4.24
4076 4223 5.747197 CCAGATGCTATGTTTGATTTTCAGC 59.253 40.000 0.00 0.00 0.00 4.26
4121 4268 5.818136 ACCAATCTGTTCGACAAATATGG 57.182 39.130 0.00 0.00 0.00 2.74
4203 4350 7.990541 TGATGTTGTGTGAAATTTTCTGAAG 57.009 32.000 10.33 0.00 0.00 3.02
4287 4434 9.708092 TGCAGAAATTAAATTGTTGATGAATCA 57.292 25.926 0.00 0.00 34.44 2.57
4421 4579 2.922955 TCCACATGAATTAACCCCCTCA 59.077 45.455 0.00 0.00 0.00 3.86
4641 4820 1.618837 TCTTCTCTGTGGTCCTTTCGG 59.381 52.381 0.00 0.00 0.00 4.30
4644 4823 2.224646 GCCTTCTTCTCTGTGGTCCTTT 60.225 50.000 0.00 0.00 0.00 3.11
4656 4835 1.964223 TCACTCTCGTTGCCTTCTTCT 59.036 47.619 0.00 0.00 0.00 2.85
4677 4856 4.291792 TCCTTATTCCACCGTAGAATCCA 58.708 43.478 0.00 0.00 35.59 3.41
4792 4977 6.732154 CATATCAATTAGCCAACTTGACTGG 58.268 40.000 0.00 0.00 36.99 4.00
4844 5034 4.232221 CGTGTTCTATCCGTGTACAACTT 58.768 43.478 0.00 0.00 0.00 2.66
4845 5035 3.366679 CCGTGTTCTATCCGTGTACAACT 60.367 47.826 0.00 0.00 0.00 3.16
4846 5036 2.919229 CCGTGTTCTATCCGTGTACAAC 59.081 50.000 0.00 0.00 0.00 3.32
4847 5037 2.094597 CCCGTGTTCTATCCGTGTACAA 60.095 50.000 0.00 0.00 0.00 2.41
4848 5038 1.473677 CCCGTGTTCTATCCGTGTACA 59.526 52.381 0.00 0.00 0.00 2.90
4849 5039 1.202336 CCCCGTGTTCTATCCGTGTAC 60.202 57.143 0.00 0.00 0.00 2.90
4884 5078 1.134340 AGTTTACAACCGTGTCCAGCA 60.134 47.619 0.00 0.00 39.30 4.41
4980 5176 5.201243 TCTGCTCTAGGACTACAATAGCAA 58.799 41.667 0.00 0.00 37.97 3.91
4985 5181 6.609212 TGATCTTTCTGCTCTAGGACTACAAT 59.391 38.462 0.00 0.00 0.00 2.71
5056 5253 2.016096 GCAGCAATGGAGGGAGAGAAC 61.016 57.143 0.00 0.00 0.00 3.01
5185 5565 4.584874 TCTGAAAAGCCGATCCAATGTAA 58.415 39.130 0.00 0.00 0.00 2.41
5234 5614 8.348285 AGAGGCATTAGAGATAGAGATGTAAC 57.652 38.462 0.00 0.00 0.00 2.50
5308 5860 5.246203 TGGTTGTGATAGGATCATAGGCTAC 59.754 44.000 0.00 0.00 42.04 3.58
5380 5932 2.180159 TTACCAAGGCTCTGACGGGC 62.180 60.000 0.00 0.00 0.00 6.13
5451 6006 7.065923 ACCACTTTGTTAGAGAAAGAGTTGAAC 59.934 37.037 4.80 0.00 34.94 3.18
5453 6008 6.650120 ACCACTTTGTTAGAGAAAGAGTTGA 58.350 36.000 4.80 0.00 34.94 3.18
5479 6034 7.209475 CCAAAACAAAACACATAGAAGTGGAT 58.791 34.615 0.00 0.00 43.72 3.41
5491 6046 5.085390 GTGTTTCATGCCAAAACAAAACAC 58.915 37.500 15.41 15.41 45.35 3.32
5498 6054 3.451141 TCCTGTGTTTCATGCCAAAAC 57.549 42.857 2.38 2.38 37.18 2.43
5563 6119 8.546083 ACAGAAGTTATGTGGATCTAATCTCT 57.454 34.615 1.52 0.00 0.00 3.10
5564 6120 9.039870 CAACAGAAGTTATGTGGATCTAATCTC 57.960 37.037 3.46 0.00 35.85 2.75
5565 6121 8.543774 ACAACAGAAGTTATGTGGATCTAATCT 58.456 33.333 11.98 0.00 35.85 2.40
5566 6122 8.607459 CACAACAGAAGTTATGTGGATCTAATC 58.393 37.037 11.98 0.00 35.85 1.75
5567 6123 7.554118 CCACAACAGAAGTTATGTGGATCTAAT 59.446 37.037 16.68 0.00 46.74 1.73
5568 6124 6.878923 CCACAACAGAAGTTATGTGGATCTAA 59.121 38.462 16.68 0.00 46.74 2.10
5569 6125 6.406370 CCACAACAGAAGTTATGTGGATCTA 58.594 40.000 16.68 0.00 46.74 1.98
5570 6126 5.248640 CCACAACAGAAGTTATGTGGATCT 58.751 41.667 16.68 0.00 46.74 2.75
5571 6127 4.142600 GCCACAACAGAAGTTATGTGGATC 60.143 45.833 23.78 6.78 46.74 3.36
5572 6128 3.758554 GCCACAACAGAAGTTATGTGGAT 59.241 43.478 23.78 5.20 46.74 3.41
5573 6129 3.146066 GCCACAACAGAAGTTATGTGGA 58.854 45.455 23.78 0.00 46.74 4.02
5574 6130 2.095768 CGCCACAACAGAAGTTATGTGG 60.096 50.000 17.19 17.19 46.62 4.17
5575 6131 2.548057 ACGCCACAACAGAAGTTATGTG 59.452 45.455 3.46 4.07 35.85 3.21
5576 6132 2.846193 ACGCCACAACAGAAGTTATGT 58.154 42.857 0.00 0.00 35.85 2.29
5577 6133 3.554524 CAACGCCACAACAGAAGTTATG 58.445 45.455 0.00 0.00 35.85 1.90
5578 6134 2.552315 CCAACGCCACAACAGAAGTTAT 59.448 45.455 0.00 0.00 35.85 1.89
5579 6135 1.944024 CCAACGCCACAACAGAAGTTA 59.056 47.619 0.00 0.00 35.85 2.24
5580 6136 0.738389 CCAACGCCACAACAGAAGTT 59.262 50.000 0.00 0.00 38.88 2.66
5581 6137 1.724582 GCCAACGCCACAACAGAAGT 61.725 55.000 0.00 0.00 0.00 3.01
5582 6138 1.008538 GCCAACGCCACAACAGAAG 60.009 57.895 0.00 0.00 0.00 2.85
5583 6139 3.115556 GCCAACGCCACAACAGAA 58.884 55.556 0.00 0.00 0.00 3.02
5593 6149 0.948678 TACAAAGACTTGGCCAACGC 59.051 50.000 16.05 9.50 36.82 4.84
5594 6150 3.502211 AGAATACAAAGACTTGGCCAACG 59.498 43.478 16.05 13.46 36.82 4.10
5595 6151 5.705905 AGTAGAATACAAAGACTTGGCCAAC 59.294 40.000 16.05 5.95 46.26 3.77
5596 6152 5.876357 AGTAGAATACAAAGACTTGGCCAA 58.124 37.500 19.25 19.25 46.26 4.52
5597 6153 5.499004 AGTAGAATACAAAGACTTGGCCA 57.501 39.130 0.00 0.00 46.26 5.36
5598 6154 5.938125 TCAAGTAGAATACAAAGACTTGGCC 59.062 40.000 11.86 0.00 46.26 5.36
5599 6155 6.832804 GTCAAGTAGAATACAAAGACTTGGC 58.167 40.000 11.86 7.43 46.26 4.52
5600 6156 8.608844 AAGTCAAGTAGAATACAAAGACTTGG 57.391 34.615 11.86 0.00 46.86 3.61
5603 6159 7.217200 TGCAAGTCAAGTAGAATACAAAGACT 58.783 34.615 0.00 0.00 46.26 3.24
5604 6160 7.421530 TGCAAGTCAAGTAGAATACAAAGAC 57.578 36.000 0.00 0.00 46.26 3.01
5605 6161 8.445275 TTTGCAAGTCAAGTAGAATACAAAGA 57.555 30.769 0.00 0.00 46.26 2.52
5606 6162 9.683069 AATTTGCAAGTCAAGTAGAATACAAAG 57.317 29.630 0.00 0.00 46.26 2.77
5607 6163 9.462174 CAATTTGCAAGTCAAGTAGAATACAAA 57.538 29.630 0.00 0.00 46.26 2.83
5608 6164 8.629158 ACAATTTGCAAGTCAAGTAGAATACAA 58.371 29.630 0.00 0.00 46.26 2.41
5609 6165 8.165239 ACAATTTGCAAGTCAAGTAGAATACA 57.835 30.769 0.00 0.00 46.26 2.29
5610 6166 8.905702 CAACAATTTGCAAGTCAAGTAGAATAC 58.094 33.333 0.00 0.00 43.47 1.89
5612 6168 7.935338 CAACAATTTGCAAGTCAAGTAGAAT 57.065 32.000 0.00 0.00 35.84 2.40
5627 6183 3.605486 GCTAGAAAGCGAGCAACAATTTG 59.395 43.478 0.00 0.00 41.70 2.32
5628 6184 3.826466 GCTAGAAAGCGAGCAACAATTT 58.174 40.909 0.00 0.00 41.70 1.82
5629 6185 3.477899 GCTAGAAAGCGAGCAACAATT 57.522 42.857 0.00 0.00 41.70 2.32
5641 6197 8.344098 GGAGAGATTTCATTGAATGCTAGAAAG 58.656 37.037 0.00 0.00 32.45 2.62
5642 6198 7.284034 GGGAGAGATTTCATTGAATGCTAGAAA 59.716 37.037 0.00 0.00 33.33 2.52
5643 6199 6.769822 GGGAGAGATTTCATTGAATGCTAGAA 59.230 38.462 0.00 0.00 0.00 2.10
5644 6200 6.100859 AGGGAGAGATTTCATTGAATGCTAGA 59.899 38.462 0.00 0.00 0.00 2.43
5645 6201 6.297582 AGGGAGAGATTTCATTGAATGCTAG 58.702 40.000 0.00 0.00 0.00 3.42
5646 6202 6.257994 AGGGAGAGATTTCATTGAATGCTA 57.742 37.500 0.00 0.00 0.00 3.49
5647 6203 5.126699 AGGGAGAGATTTCATTGAATGCT 57.873 39.130 0.00 0.87 0.00 3.79
5648 6204 6.949352 TTAGGGAGAGATTTCATTGAATGC 57.051 37.500 0.00 0.00 0.00 3.56
5656 6212 9.561069 GTGCTTTATTATTAGGGAGAGATTTCA 57.439 33.333 0.00 0.00 0.00 2.69
5657 6213 8.713271 CGTGCTTTATTATTAGGGAGAGATTTC 58.287 37.037 0.00 0.00 0.00 2.17
5658 6214 7.661847 CCGTGCTTTATTATTAGGGAGAGATTT 59.338 37.037 0.00 0.00 0.00 2.17
5659 6215 7.016268 TCCGTGCTTTATTATTAGGGAGAGATT 59.984 37.037 0.00 0.00 0.00 2.40
5660 6216 6.497259 TCCGTGCTTTATTATTAGGGAGAGAT 59.503 38.462 0.00 0.00 0.00 2.75
5661 6217 5.836898 TCCGTGCTTTATTATTAGGGAGAGA 59.163 40.000 0.00 0.00 0.00 3.10
5662 6218 6.097915 TCCGTGCTTTATTATTAGGGAGAG 57.902 41.667 0.00 0.00 0.00 3.20
5663 6219 6.681729 ATCCGTGCTTTATTATTAGGGAGA 57.318 37.500 0.00 0.00 0.00 3.71
5664 6220 6.149474 CCAATCCGTGCTTTATTATTAGGGAG 59.851 42.308 0.00 0.00 0.00 4.30
5665 6221 6.001460 CCAATCCGTGCTTTATTATTAGGGA 58.999 40.000 0.00 0.00 0.00 4.20
5666 6222 5.183140 CCCAATCCGTGCTTTATTATTAGGG 59.817 44.000 0.00 0.00 0.00 3.53
5667 6223 5.768164 ACCCAATCCGTGCTTTATTATTAGG 59.232 40.000 0.00 0.00 0.00 2.69
5668 6224 6.710744 AGACCCAATCCGTGCTTTATTATTAG 59.289 38.462 0.00 0.00 0.00 1.73
5669 6225 6.597562 AGACCCAATCCGTGCTTTATTATTA 58.402 36.000 0.00 0.00 0.00 0.98
5670 6226 5.445964 AGACCCAATCCGTGCTTTATTATT 58.554 37.500 0.00 0.00 0.00 1.40
5671 6227 5.048846 AGACCCAATCCGTGCTTTATTAT 57.951 39.130 0.00 0.00 0.00 1.28
5672 6228 4.448210 GAGACCCAATCCGTGCTTTATTA 58.552 43.478 0.00 0.00 0.00 0.98
5673 6229 3.279434 GAGACCCAATCCGTGCTTTATT 58.721 45.455 0.00 0.00 0.00 1.40
5674 6230 2.421529 GGAGACCCAATCCGTGCTTTAT 60.422 50.000 0.00 0.00 0.00 1.40
5675 6231 1.065709 GGAGACCCAATCCGTGCTTTA 60.066 52.381 0.00 0.00 0.00 1.85
5676 6232 0.322546 GGAGACCCAATCCGTGCTTT 60.323 55.000 0.00 0.00 0.00 3.51
5677 6233 1.299976 GGAGACCCAATCCGTGCTT 59.700 57.895 0.00 0.00 0.00 3.91
5678 6234 2.990479 GGAGACCCAATCCGTGCT 59.010 61.111 0.00 0.00 0.00 4.40
5683 6239 0.837272 TGAATCCGGAGACCCAATCC 59.163 55.000 11.34 0.00 0.00 3.01
5684 6240 1.475213 GGTGAATCCGGAGACCCAATC 60.475 57.143 11.34 0.03 0.00 2.67
5685 6241 0.546598 GGTGAATCCGGAGACCCAAT 59.453 55.000 11.34 0.00 0.00 3.16
5686 6242 1.988015 GGTGAATCCGGAGACCCAA 59.012 57.895 11.34 0.00 0.00 4.12
5687 6243 3.721868 GGTGAATCCGGAGACCCA 58.278 61.111 11.34 1.77 0.00 4.51
5704 6260 1.785533 GTGTAAAAACGCCGCGACG 60.786 57.895 21.79 14.75 39.50 5.12
5705 6261 0.316032 TTGTGTAAAAACGCCGCGAC 60.316 50.000 21.79 7.22 0.00 5.19
5706 6262 0.376152 TTTGTGTAAAAACGCCGCGA 59.624 45.000 21.79 0.00 0.00 5.87
5707 6263 0.767687 CTTTGTGTAAAAACGCCGCG 59.232 50.000 12.14 12.14 0.00 6.46
5708 6264 1.125270 CCTTTGTGTAAAAACGCCGC 58.875 50.000 0.00 0.00 0.00 6.53
5709 6265 2.377880 GACCTTTGTGTAAAAACGCCG 58.622 47.619 0.00 0.00 0.00 6.46
5710 6266 2.544277 GGGACCTTTGTGTAAAAACGCC 60.544 50.000 0.00 0.00 0.00 5.68
5711 6267 2.359848 AGGGACCTTTGTGTAAAAACGC 59.640 45.455 0.00 0.00 0.00 4.84
5712 6268 4.642445 AAGGGACCTTTGTGTAAAAACG 57.358 40.909 0.00 0.00 31.29 3.60
5713 6269 8.951787 AAATAAAGGGACCTTTGTGTAAAAAC 57.048 30.769 23.09 0.00 44.84 2.43
5714 6270 9.961264 AAAAATAAAGGGACCTTTGTGTAAAAA 57.039 25.926 23.09 4.21 44.84 1.94
5738 6294 4.399934 GGGAGTGCGGGTTCAATATAAAAA 59.600 41.667 0.00 0.00 0.00 1.94
5739 6295 3.949113 GGGAGTGCGGGTTCAATATAAAA 59.051 43.478 0.00 0.00 0.00 1.52
5740 6296 3.201266 AGGGAGTGCGGGTTCAATATAAA 59.799 43.478 0.00 0.00 0.00 1.40
5741 6297 2.775384 AGGGAGTGCGGGTTCAATATAA 59.225 45.455 0.00 0.00 0.00 0.98
5742 6298 2.404559 AGGGAGTGCGGGTTCAATATA 58.595 47.619 0.00 0.00 0.00 0.86
5743 6299 1.213296 AGGGAGTGCGGGTTCAATAT 58.787 50.000 0.00 0.00 0.00 1.28
5744 6300 1.483415 GTAGGGAGTGCGGGTTCAATA 59.517 52.381 0.00 0.00 0.00 1.90
5745 6301 0.252197 GTAGGGAGTGCGGGTTCAAT 59.748 55.000 0.00 0.00 0.00 2.57
5746 6302 1.675219 GTAGGGAGTGCGGGTTCAA 59.325 57.895 0.00 0.00 0.00 2.69
5747 6303 3.384348 GTAGGGAGTGCGGGTTCA 58.616 61.111 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.