AutoCloner

Multiple sequence alignment - TraesCS3B01G220800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G220800	chr3B	100.000	1869	0	0	480	2348	271101922	271100054	0.000000e+00	3452.0
1	TraesCS3B01G220800	chr3B	100.000	237	0	0	1	237	271102401	271102165	2.770000e-119	438.0
2	TraesCS3B01G220800	chr5B	96.148	1869	48	4	483	2348	636915925	636914078	0.000000e+00	3031.0
3	TraesCS3B01G220800	chr5B	96.648	1044	33	2	1004	2046	234045228	234046270	0.000000e+00	1733.0
4	TraesCS3B01G220800	chr5B	95.215	209	9	1	1	209	234044440	234044647	1.740000e-86	329.0
5	TraesCS3B01G220800	chr4A	95.595	1294	42	5	480	1758	741610845	741612138	0.000000e+00	2060.0
6	TraesCS3B01G220800	chr4A	97.865	562	9	3	1788	2348	741617654	741618213	0.000000e+00	968.0
7	TraesCS3B01G220800	chr4A	98.230	452	6	2	1899	2348	687009268	687009719	0.000000e+00	789.0
8	TraesCS3B01G220800	chr4A	95.642	413	18	0	483	895	687007748	687008160	0.000000e+00	664.0
9	TraesCS3B01G220800	chr4A	93.671	237	11	2	1	237	687007504	687007736	3.710000e-93	351.0
10	TraesCS3B01G220800	chr2B	96.360	1044	36	2	1004	2046	90148211	90149253	0.000000e+00	1716.0
11	TraesCS3B01G220800	chr4B	96.165	1043	31	2	1004	2046	355187139	355186106	0.000000e+00	1696.0
12	TraesCS3B01G220800	chr4B	95.226	398	19	0	980	1377	1768681	1769078	4.260000e-177	630.0
13	TraesCS3B01G220800	chr4B	94.515	237	10	2	1	237	355187724	355187491	1.720000e-96	363.0
14	TraesCS3B01G220800	chr4B	94.737	76	4	0	1418	1493	1769078	1769153	4.100000e-23	119.0
15	TraesCS3B01G220800	chr7B	94.163	1045	32	13	1004	2046	668435026	668436043	0.000000e+00	1565.0
16	TraesCS3B01G220800	chr7B	95.035	282	14	0	1004	1285	668431216	668431497	5.950000e-121	444.0
17	TraesCS3B01G220800	chr1D	97.476	634	13	3	1718	2348	66930475	66931108	0.000000e+00	1079.0
18	TraesCS3B01G220800	chr1D	97.152	632	14	3	1721	2348	424019968	424019337	0.000000e+00	1064.0
19	TraesCS3B01G220800	chr1D	95.884	413	17	0	483	895	66928843	66929255	0.000000e+00	669.0
20	TraesCS3B01G220800	chr1D	96.624	237	6	1	1	237	66928596	66928830	2.190000e-105	392.0
21	TraesCS3B01G220800	chr1D	97.685	216	4	1	1502	1717	424020709	424020495	1.020000e-98	370.0
22	TraesCS3B01G220800	chr1D	97.235	217	4	2	1502	1717	66929739	66929954	1.330000e-97	366.0
23	TraesCS3B01G220800	chr1D	97.143	70	2	0	826	895	424031880	424031811	4.100000e-23	119.0
24	TraesCS3B01G220800	chr2D	97.464	631	13	2	1721	2348	472762503	472761873	0.000000e+00	1074.0
25	TraesCS3B01G220800	chr2D	95.884	413	17	0	483	895	472764140	472763728	0.000000e+00	669.0
26	TraesCS3B01G220800	chr2D	94.515	237	9	3	1	237	472764384	472764152	1.720000e-96	363.0
27	TraesCS3B01G220800	chr5D	97.147	631	14	4	1721	2348	24441133	24440504	0.000000e+00	1062.0
28	TraesCS3B01G220800	chr5D	94.915	413	21	0	483	895	24442770	24442358	0.000000e+00	647.0
29	TraesCS3B01G220800	chr5D	94.619	223	9	1	1	223	24443025	24442806	2.230000e-90	342.0
30	TraesCS3B01G220800	chr7D	96.682	633	16	3	1721	2348	276087841	276087209	0.000000e+00	1048.0
31	TraesCS3B01G220800	chr7D	94.746	571	23	4	1785	2348	597627418	597626848	0.000000e+00	881.0
32	TraesCS3B01G220800	chr7D	95.642	413	18	0	483	895	276089479	276089067	0.000000e+00	664.0
33	TraesCS3B01G220800	chr7D	98.148	216	3	1	1502	1717	276088583	276088369	2.200000e-100	375.0
34	TraesCS3B01G220800	chr6B	93.462	413	27	0	480	892	56574159	56574571	4.290000e-172	614.0
35	TraesCS3B01G220800	chr1A	94.609	371	20	0	483	853	34428566	34428196	2.020000e-160	575.0
36	TraesCS3B01G220800	chr4D	91.398	372	32	0	980	1351	1326260	1326631	5.790000e-141	510.0
37	TraesCS3B01G220800	chrUn	94.515	237	11	2	1	237	273019032	273018798	4.770000e-97	364.0
38	TraesCS3B01G220800	chr5A	85.950	242	16	14	1	235	689247011	689246781	2.330000e-60	243.0
39	TraesCS3B01G220800	chr5A	97.222	36	1	0	1445	1480	699469999	699469964	7.010000e-06	62.1
40	TraesCS3B01G220800	chr6D	84.836	244	28	8	1	237	150887988	150887747	1.080000e-58	237.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G220800	chr3B	271100054	271102401	2347	True	1945.000000	3452	100.000000	1	2348	2	chr3B.!!$R1	2347
1	TraesCS3B01G220800	chr5B	636914078	636915925	1847	True	3031.000000	3031	96.148000	483	2348	1	chr5B.!!$R1	1865
2	TraesCS3B01G220800	chr5B	234044440	234046270	1830	False	1031.000000	1733	95.931500	1	2046	2	chr5B.!!$F1	2045
3	TraesCS3B01G220800	chr4A	741610845	741612138	1293	False	2060.000000	2060	95.595000	480	1758	1	chr4A.!!$F1	1278
4	TraesCS3B01G220800	chr4A	741617654	741618213	559	False	968.000000	968	97.865000	1788	2348	1	chr4A.!!$F2	560
5	TraesCS3B01G220800	chr4A	687007504	687009719	2215	False	601.333333	789	95.847667	1	2348	3	chr4A.!!$F3	2347
6	TraesCS3B01G220800	chr2B	90148211	90149253	1042	False	1716.000000	1716	96.360000	1004	2046	1	chr2B.!!$F1	1042
7	TraesCS3B01G220800	chr4B	355186106	355187724	1618	True	1029.500000	1696	95.340000	1	2046	2	chr4B.!!$R1	2045
8	TraesCS3B01G220800	chr7B	668431216	668436043	4827	False	1004.500000	1565	94.599000	1004	2046	2	chr7B.!!$F1	1042
9	TraesCS3B01G220800	chr1D	424019337	424020709	1372	True	717.000000	1064	97.418500	1502	2348	2	chr1D.!!$R2	846
10	TraesCS3B01G220800	chr1D	66928596	66931108	2512	False	626.500000	1079	96.804750	1	2348	4	chr1D.!!$F1	2347
11	TraesCS3B01G220800	chr2D	472761873	472764384	2511	True	702.000000	1074	95.954333	1	2348	3	chr2D.!!$R1	2347
12	TraesCS3B01G220800	chr5D	24440504	24443025	2521	True	683.666667	1062	95.560333	1	2348	3	chr5D.!!$R1	2347
13	TraesCS3B01G220800	chr7D	597626848	597627418	570	True	881.000000	881	94.746000	1785	2348	1	chr7D.!!$R1	563
14	TraesCS3B01G220800	chr7D	276087209	276089479	2270	True	695.666667	1048	96.824000	483	2348	3	chr7D.!!$R2	1865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
844	854	0.040958	CTCAAACAGTGCACTTCGCC	60.041	55.0	18.94	0.0	41.33	5.54	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1754	5507	2.75676	CCAATCAACACAAGCTAGCCAT	59.243	45.455	12.13	0.0	0.0	4.4	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
72	73	3.704231	GACATGGCGCCCATCCAGT	62.704	63.158	26.77	13.03	43.15	4.00
84	85	2.554564	CCCATCCAGTCATCCATCCATG	60.555	54.545	0.00	0.00	0.00	3.66
176	177	1.132689	ACCCTAGATCAGATCCCCCAC	60.133	57.143	6.80	0.00	0.00	4.61
561	571	2.133201	TCCCTCCCTCCCCTCTCT	59.867	66.667	0.00	0.00	0.00	3.10
741	751	2.673523	GGGCCAGCAGATGAGTGT	59.326	61.111	4.39	0.00	0.00	3.55
768	778	5.245977	CCCTTCTTCTCTGTTCTCTTCTTCT	59.754	44.000	0.00	0.00	0.00	2.85
770	780	6.015519	CCTTCTTCTCTGTTCTCTTCTTCTCA	60.016	42.308	0.00	0.00	0.00	3.27
784	794	6.397272	TCTTCTTCTCATGCTCTCTTTCTTC	58.603	40.000	0.00	0.00	0.00	2.87
824	834	4.704540	ACACATCTCGATTTCTCTCTCTGT	59.295	41.667	0.00	0.00	0.00	3.41
825	835	5.163663	ACACATCTCGATTTCTCTCTCTGTC	60.164	44.000	0.00	0.00	0.00	3.51
827	837	5.296780	ACATCTCGATTTCTCTCTCTGTCTC	59.703	44.000	0.00	0.00	0.00	3.36
828	838	4.837972	TCTCGATTTCTCTCTCTGTCTCA	58.162	43.478	0.00	0.00	0.00	3.27
829	839	5.249420	TCTCGATTTCTCTCTCTGTCTCAA	58.751	41.667	0.00	0.00	0.00	3.02
830	840	5.707764	TCTCGATTTCTCTCTCTGTCTCAAA	59.292	40.000	0.00	0.00	0.00	2.69
831	841	5.704888	TCGATTTCTCTCTCTGTCTCAAAC	58.295	41.667	0.00	0.00	0.00	2.93
832	842	5.241728	TCGATTTCTCTCTCTGTCTCAAACA	59.758	40.000	0.00	0.00	36.18	2.83
842	852	1.933181	TGTCTCAAACAGTGCACTTCG	59.067	47.619	18.94	9.89	32.81	3.79
843	853	0.937304	TCTCAAACAGTGCACTTCGC	59.063	50.000	18.94	0.00	42.89	4.70
844	854	0.040958	CTCAAACAGTGCACTTCGCC	60.041	55.000	18.94	0.00	41.33	5.54
845	855	1.369209	CAAACAGTGCACTTCGCCG	60.369	57.895	18.94	8.22	41.33	6.46
846	856	3.181169	AAACAGTGCACTTCGCCGC	62.181	57.895	18.94	0.00	41.33	6.53
849	859	4.704833	AGTGCACTTCGCCGCCAT	62.705	61.111	15.25	0.00	41.33	4.40
850	860	4.465512	GTGCACTTCGCCGCCATG	62.466	66.667	10.32	0.00	41.33	3.66
854	864	2.514592	ACTTCGCCGCCATGGATG	60.515	61.111	18.40	6.69	42.00	3.51
855	865	3.957535	CTTCGCCGCCATGGATGC	61.958	66.667	18.40	15.85	42.00	3.91
857	867	4.916293	TCGCCGCCATGGATGCTC	62.916	66.667	18.40	0.00	42.00	4.26
862	872	3.643978	GCCATGGATGCTCGCGTC	61.644	66.667	18.40	2.54	0.00	5.19
903	913	2.126071	CGATGCGAACGGTGGACT	60.126	61.111	0.00	0.00	0.00	3.85
904	914	2.158959	CGATGCGAACGGTGGACTC	61.159	63.158	0.00	0.00	0.00	3.36
905	915	1.810030	GATGCGAACGGTGGACTCC	60.810	63.158	0.00	0.00	0.00	3.85
906	916	2.227089	GATGCGAACGGTGGACTCCT	62.227	60.000	0.00	0.00	0.00	3.69
908	918	1.737008	GCGAACGGTGGACTCCTTC	60.737	63.158	0.00	0.00	0.00	3.46
909	919	1.080025	CGAACGGTGGACTCCTTCC	60.080	63.158	0.00	0.00	46.13	3.46
910	920	1.533469	CGAACGGTGGACTCCTTCCT	61.533	60.000	0.00	0.00	46.10	3.36
911	921	0.246910	GAACGGTGGACTCCTTCCTC	59.753	60.000	0.00	0.00	46.10	3.71
912	922	0.178929	AACGGTGGACTCCTTCCTCT	60.179	55.000	0.00	0.00	46.10	3.69
913	923	0.178929	ACGGTGGACTCCTTCCTCTT	60.179	55.000	0.00	0.00	46.10	2.85
914	924	0.533032	CGGTGGACTCCTTCCTCTTC	59.467	60.000	0.00	0.00	46.10	2.87
916	926	2.261729	GGTGGACTCCTTCCTCTTCTT	58.738	52.381	0.00	0.00	46.10	2.52
917	927	2.027653	GGTGGACTCCTTCCTCTTCTTG	60.028	54.545	0.00	0.00	46.10	3.02
918	928	2.027653	GTGGACTCCTTCCTCTTCTTGG	60.028	54.545	0.00	0.00	46.10	3.61
921	931	3.521531	GGACTCCTTCCTCTTCTTGGAAT	59.478	47.826	0.00	0.00	42.03	3.01
922	932	4.018870	GGACTCCTTCCTCTTCTTGGAATT	60.019	45.833	0.00	0.00	42.03	2.17
923	933	5.172687	ACTCCTTCCTCTTCTTGGAATTC	57.827	43.478	0.00	0.00	42.03	2.17
924	934	4.849235	ACTCCTTCCTCTTCTTGGAATTCT	59.151	41.667	5.23	0.00	42.03	2.40
925	935	5.311913	ACTCCTTCCTCTTCTTGGAATTCTT	59.688	40.000	5.23	0.00	42.03	2.52
926	936	5.810095	TCCTTCCTCTTCTTGGAATTCTTC	58.190	41.667	5.23	0.00	42.03	2.87
927	937	5.549619	TCCTTCCTCTTCTTGGAATTCTTCT	59.450	40.000	5.23	0.00	42.03	2.85
928	938	5.879777	CCTTCCTCTTCTTGGAATTCTTCTC	59.120	44.000	5.23	0.00	42.03	2.87
929	939	5.428184	TCCTCTTCTTGGAATTCTTCTCC	57.572	43.478	5.23	0.00	0.00	3.71
930	940	4.081420	TCCTCTTCTTGGAATTCTTCTCCG	60.081	45.833	5.23	0.00	35.55	4.63
931	941	3.600388	TCTTCTTGGAATTCTTCTCCGC	58.400	45.455	5.23	0.00	35.55	5.54
932	942	2.403252	TCTTGGAATTCTTCTCCGCC	57.597	50.000	5.23	0.00	35.55	6.13
934	944	2.012673	CTTGGAATTCTTCTCCGCCAG	58.987	52.381	5.23	0.00	35.55	4.85
935	945	0.392998	TGGAATTCTTCTCCGCCAGC	60.393	55.000	5.23	0.00	35.55	4.85
936	946	1.098129	GGAATTCTTCTCCGCCAGCC	61.098	60.000	5.23	0.00	0.00	4.85
937	947	1.432270	GAATTCTTCTCCGCCAGCCG	61.432	60.000	0.00	0.00	0.00	5.52
962	972	4.831307	CCTCCGCTTCGTCGTCGG	62.831	72.222	14.01	14.01	44.16	4.79
966	976	4.394078	CGCTTCGTCGTCGGTGGA	62.394	66.667	1.55	0.00	37.69	4.02
969	979	1.411493	GCTTCGTCGTCGGTGGAATC	61.411	60.000	1.55	0.00	37.69	2.52
970	980	0.801067	CTTCGTCGTCGGTGGAATCC	60.801	60.000	1.55	0.00	37.69	3.01
971	981	1.525718	TTCGTCGTCGGTGGAATCCA	61.526	55.000	0.00	0.00	37.69	3.41
973	983	0.459585	CGTCGTCGGTGGAATCCATT	60.460	55.000	4.81	0.00	35.28	3.16
974	984	1.287425	GTCGTCGGTGGAATCCATTC	58.713	55.000	4.81	0.07	35.28	2.67
975	985	0.899019	TCGTCGGTGGAATCCATTCA	59.101	50.000	4.81	0.00	38.53	2.57
976	986	1.484653	TCGTCGGTGGAATCCATTCAT	59.515	47.619	4.81	0.00	38.53	2.57
977	987	1.867233	CGTCGGTGGAATCCATTCATC	59.133	52.381	4.81	0.00	38.53	2.92
978	988	1.867233	GTCGGTGGAATCCATTCATCG	59.133	52.381	4.81	5.53	38.53	3.84
979	989	1.202639	TCGGTGGAATCCATTCATCGG	60.203	52.381	4.81	0.00	38.53	4.18
981	991	2.498167	GGTGGAATCCATTCATCGGAG	58.502	52.381	4.81	0.00	38.53	4.63
982	992	2.104792	GGTGGAATCCATTCATCGGAGA	59.895	50.000	4.81	0.00	38.53	3.71
983	993	3.433598	GGTGGAATCCATTCATCGGAGAA	60.434	47.826	4.81	0.00	36.20	2.87
984	994	3.812053	GTGGAATCCATTCATCGGAGAAG	59.188	47.826	4.81	0.00	36.20	2.85
986	996	4.202295	TGGAATCCATTCATCGGAGAAGAG	60.202	45.833	0.00	0.00	35.03	2.85
987	997	4.039730	GGAATCCATTCATCGGAGAAGAGA	59.960	45.833	0.00	0.00	35.03	3.10
990	1000	4.281657	TCCATTCATCGGAGAAGAGAAGA	58.718	43.478	0.00	0.00	43.58	2.87
991	1001	4.340666	TCCATTCATCGGAGAAGAGAAGAG	59.659	45.833	0.00	0.00	43.58	2.85
992	1002	4.340666	CCATTCATCGGAGAAGAGAAGAGA	59.659	45.833	0.00	0.00	43.58	3.10
993	1003	5.163468	CCATTCATCGGAGAAGAGAAGAGAA	60.163	44.000	0.00	0.00	43.58	2.87
995	1005	4.849518	TCATCGGAGAAGAGAAGAGAAGA	58.150	43.478	0.00	0.00	43.58	2.87
996	1006	5.257262	TCATCGGAGAAGAGAAGAGAAGAA	58.743	41.667	0.00	0.00	43.58	2.52
997	1007	5.712446	TCATCGGAGAAGAGAAGAGAAGAAA	59.288	40.000	0.00	0.00	43.58	2.52
999	1009	6.019779	TCGGAGAAGAGAAGAGAAGAAAAG	57.980	41.667	0.00	0.00	0.00	2.27
1000	1010	5.770663	TCGGAGAAGAGAAGAGAAGAAAAGA	59.229	40.000	0.00	0.00	0.00	2.52
1003	1013	6.313658	GGAGAAGAGAAGAGAAGAAAAGATGC	59.686	42.308	0.00	0.00	0.00	3.91
1004	1014	7.008021	AGAAGAGAAGAGAAGAAAAGATGCT	57.992	36.000	0.00	0.00	0.00	3.79
1005	1015	6.875195	AGAAGAGAAGAGAAGAAAAGATGCTG	59.125	38.462	0.00	0.00	0.00	4.41
1301	4319	2.257371	CTCCGTCCGCAAGTTCGA	59.743	61.111	0.00	0.00	34.43	3.71
1302	4320	1.153823	CTCCGTCCGCAAGTTCGAT	60.154	57.895	0.00	0.00	34.43	3.59
1485	4515	3.251004	CAGGTTCAGTTTCAGTTAGCCAC	59.749	47.826	0.00	0.00	0.00	5.01
1500	4530	8.982723	TCAGTTAGCCACTAAATTCTTCTATCT	58.017	33.333	0.00	0.00	32.76	1.98
1571	4794	6.267014	TGTCTTGTTAACTTCTAGCTACCTGT	59.733	38.462	7.22	0.00	0.00	4.00
1754	5507	3.544684	CAATTAGCTGGGATGTGTAGCA	58.455	45.455	0.00	0.00	39.84	3.49

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
23	24	4.202111	CGTGGGAAGAGTTTTGATTGGTTT	60.202	41.667	0.00	0.00	0.00	3.27
72	73	3.847780	TGGAGATATGCATGGATGGATGA	59.152	43.478	10.16	0.00	39.29	2.92
84	85	1.344438	TGGACGGATGTGGAGATATGC	59.656	52.381	0.00	0.00	0.00	3.14
479	489	2.363018	TGGGAGAGGACTGGAGCG	60.363	66.667	0.00	0.00	0.00	5.03
481	491	1.687493	GGGTGGGAGAGGACTGGAG	60.687	68.421	0.00	0.00	0.00	3.86
741	751	3.850752	AGAGAACAGAGAAGAAGGGTGA	58.149	45.455	0.00	0.00	0.00	4.02
768	778	3.448934	AGGAGGAAGAAAGAGAGCATGA	58.551	45.455	0.00	0.00	0.00	3.07
770	780	4.535692	AGAAAGGAGGAAGAAAGAGAGCAT	59.464	41.667	0.00	0.00	0.00	3.79
784	794	3.161067	TGTGTGAGAGAGAGAAAGGAGG	58.839	50.000	0.00	0.00	0.00	4.30
824	834	0.937304	GCGAAGTGCACTGTTTGAGA	59.063	50.000	22.49	0.00	45.45	3.27
825	835	3.444657	GCGAAGTGCACTGTTTGAG	57.555	52.632	22.49	9.37	45.45	3.02
836	846	2.514592	ATCCATGGCGGCGAAGTG	60.515	61.111	12.98	4.84	33.14	3.16
837	847	2.514592	CATCCATGGCGGCGAAGT	60.515	61.111	12.98	0.00	33.14	3.01
838	848	3.957535	GCATCCATGGCGGCGAAG	61.958	66.667	12.98	0.00	33.14	3.79
839	849	4.488136	AGCATCCATGGCGGCGAA	62.488	61.111	12.98	0.00	36.08	4.70
840	850	4.916293	GAGCATCCATGGCGGCGA	62.916	66.667	12.98	0.00	36.08	5.54
845	855	3.643978	GACGCGAGCATCCATGGC	61.644	66.667	15.93	0.00	0.00	4.40
846	856	2.969238	GGACGCGAGCATCCATGG	60.969	66.667	15.93	4.97	34.87	3.66
847	857	2.969238	GGGACGCGAGCATCCATG	60.969	66.667	15.93	0.00	36.65	3.66
848	858	4.241555	GGGGACGCGAGCATCCAT	62.242	66.667	15.93	0.00	36.65	3.41
887	897	1.810030	GGAGTCCACCGTTCGCATC	60.810	63.158	3.60	0.00	0.00	3.91
889	899	2.430382	GAAGGAGTCCACCGTTCGCA	62.430	60.000	12.86	0.00	34.73	5.10
921	931	4.082523	CCGGCTGGCGGAGAAGAA	62.083	66.667	35.91	0.00	0.00	2.52
949	959	3.884581	TTCCACCGACGACGAAGCG	62.885	63.158	9.28	2.03	42.66	4.68
950	960	1.411493	GATTCCACCGACGACGAAGC	61.411	60.000	9.28	0.00	42.66	3.86
951	961	0.801067	GGATTCCACCGACGACGAAG	60.801	60.000	9.28	0.30	42.66	3.79
954	964	0.459585	AATGGATTCCACCGACGACG	60.460	55.000	7.76	0.00	35.80	5.12
955	965	1.287425	GAATGGATTCCACCGACGAC	58.713	55.000	7.76	0.00	35.80	4.34
956	966	0.899019	TGAATGGATTCCACCGACGA	59.101	50.000	7.76	0.00	35.80	4.20
957	967	1.867233	GATGAATGGATTCCACCGACG	59.133	52.381	7.76	0.00	35.80	5.12
958	968	1.867233	CGATGAATGGATTCCACCGAC	59.133	52.381	7.76	0.80	35.80	4.79
959	969	1.202639	CCGATGAATGGATTCCACCGA	60.203	52.381	7.76	0.00	35.80	4.69
960	970	1.202639	TCCGATGAATGGATTCCACCG	60.203	52.381	7.76	6.88	35.80	4.94
962	972	3.475566	TCTCCGATGAATGGATTCCAC	57.524	47.619	7.76	0.00	35.80	4.02
965	975	5.207110	TCTCTTCTCCGATGAATGGATTC	57.793	43.478	0.00	0.00	34.32	2.52
966	976	5.365025	TCTTCTCTTCTCCGATGAATGGATT	59.635	40.000	0.00	0.00	34.32	3.01
969	979	4.340666	TCTCTTCTCTTCTCCGATGAATGG	59.659	45.833	0.00	0.00	0.00	3.16
970	980	5.512753	TCTCTTCTCTTCTCCGATGAATG	57.487	43.478	0.00	0.00	0.00	2.67
971	981	5.890985	TCTTCTCTTCTCTTCTCCGATGAAT	59.109	40.000	0.00	0.00	0.00	2.57
973	983	4.849518	TCTTCTCTTCTCTTCTCCGATGA	58.150	43.478	0.00	0.00	0.00	2.92
974	984	5.574891	TTCTTCTCTTCTCTTCTCCGATG	57.425	43.478	0.00	0.00	0.00	3.84
975	985	6.435904	TCTTTTCTTCTCTTCTCTTCTCCGAT	59.564	38.462	0.00	0.00	0.00	4.18
976	986	5.770663	TCTTTTCTTCTCTTCTCTTCTCCGA	59.229	40.000	0.00	0.00	0.00	4.55
977	987	6.019779	TCTTTTCTTCTCTTCTCTTCTCCG	57.980	41.667	0.00	0.00	0.00	4.63
978	988	6.313658	GCATCTTTTCTTCTCTTCTCTTCTCC	59.686	42.308	0.00	0.00	0.00	3.71
979	989	7.063780	CAGCATCTTTTCTTCTCTTCTCTTCTC	59.936	40.741	0.00	0.00	0.00	2.87
981	991	6.402442	GCAGCATCTTTTCTTCTCTTCTCTTC	60.402	42.308	0.00	0.00	0.00	2.87
982	992	5.412286	GCAGCATCTTTTCTTCTCTTCTCTT	59.588	40.000	0.00	0.00	0.00	2.85
983	993	4.937015	GCAGCATCTTTTCTTCTCTTCTCT	59.063	41.667	0.00	0.00	0.00	3.10
984	994	4.094739	GGCAGCATCTTTTCTTCTCTTCTC	59.905	45.833	0.00	0.00	0.00	2.87
986	996	4.009002	AGGCAGCATCTTTTCTTCTCTTC	58.991	43.478	0.00	0.00	0.00	2.87
987	997	4.031636	AGGCAGCATCTTTTCTTCTCTT	57.968	40.909	0.00	0.00	0.00	2.85
990	1000	2.824341	CCAAGGCAGCATCTTTTCTTCT	59.176	45.455	0.00	0.00	0.00	2.85
991	1001	2.821969	TCCAAGGCAGCATCTTTTCTTC	59.178	45.455	0.00	0.00	0.00	2.87
992	1002	2.880443	TCCAAGGCAGCATCTTTTCTT	58.120	42.857	0.00	0.00	0.00	2.52
993	1003	2.592102	TCCAAGGCAGCATCTTTTCT	57.408	45.000	0.00	0.00	0.00	2.52
995	1005	3.097342	AGATCCAAGGCAGCATCTTTT	57.903	42.857	0.00	0.00	0.00	2.27
996	1006	2.822707	AGATCCAAGGCAGCATCTTT	57.177	45.000	0.00	0.00	0.00	2.52
997	1007	2.025605	TGAAGATCCAAGGCAGCATCTT	60.026	45.455	4.91	4.91	38.12	2.40
999	1009	1.948145	CTGAAGATCCAAGGCAGCATC	59.052	52.381	0.00	0.00	0.00	3.91
1000	1010	2.054232	CTGAAGATCCAAGGCAGCAT	57.946	50.000	0.00	0.00	0.00	3.79
1003	1013	1.094073	CGGCTGAAGATCCAAGGCAG	61.094	60.000	12.15	0.00	0.00	4.85
1004	1014	1.078214	CGGCTGAAGATCCAAGGCA	60.078	57.895	12.15	0.00	0.00	4.75
1005	1015	1.821332	CCGGCTGAAGATCCAAGGC	60.821	63.158	0.00	4.01	0.00	4.35
1099	4089	1.739035	CGATGCACCCGTGACTATTGT	60.739	52.381	0.00	0.00	0.00	2.71
1174	4164	2.824041	GTTGCGGACGGCCATGAT	60.824	61.111	8.76	0.00	42.61	2.45
1485	4515	5.915758	ACGCACGCTAGATAGAAGAATTTAG	59.084	40.000	0.00	0.00	0.00	1.85
1500	4530	1.208259	CATATTCAGCACGCACGCTA	58.792	50.000	0.00	0.00	41.38	4.26
1571	4794	1.227176	TGCAATGCAACGCAAGCAA	60.227	47.368	5.01	2.44	45.41	3.91
1754	5507	2.756760	CCAATCAACACAAGCTAGCCAT	59.243	45.455	12.13	0.00	0.00	4.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.