Multiple sequence alignment - TraesCS3B01G220200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G220200 chr3B 100.000 4821 0 0 1 4821 268054065 268058885 0.000000e+00 8903.0
1 TraesCS3B01G220200 chr3A 94.806 2753 100 14 2099 4821 239959294 239956555 0.000000e+00 4252.0
2 TraesCS3B01G220200 chr3A 97.029 1481 28 6 595 2062 239960770 239959293 0.000000e+00 2477.0
3 TraesCS3B01G220200 chr3A 94.203 69 4 0 526 594 239960817 239960749 6.600000e-19 106.0
4 TraesCS3B01G220200 chr3D 96.226 2464 56 8 2056 4491 186943957 186946411 0.000000e+00 4000.0
5 TraesCS3B01G220200 chr3D 95.080 1443 39 8 641 2074 186941050 186942469 0.000000e+00 2242.0
6 TraesCS3B01G220200 chr3D 90.634 331 28 2 4493 4821 186946518 186946847 2.060000e-118 436.0
7 TraesCS3B01G220200 chr3D 93.750 80 4 1 573 652 186936472 186936550 8.480000e-23 119.0
8 TraesCS3B01G220200 chrUn 92.944 496 31 4 2 496 362666867 362667359 0.000000e+00 719.0
9 TraesCS3B01G220200 chrUn 92.757 497 31 5 2 496 332644255 332644748 0.000000e+00 713.0
10 TraesCS3B01G220200 chrUn 93.243 444 26 4 2 443 463707236 463707677 0.000000e+00 651.0
11 TraesCS3B01G220200 chr7B 92.369 498 32 5 2 496 611237259 611237753 0.000000e+00 704.0
12 TraesCS3B01G220200 chr5B 87.179 78 10 0 4330 4407 691229856 691229933 6.650000e-14 89.8
13 TraesCS3B01G220200 chr5B 89.062 64 7 0 4344 4407 431784570 431784507 4.000000e-11 80.5
14 TraesCS3B01G220200 chr1D 88.000 75 9 0 4330 4404 349442682 349442756 6.650000e-14 89.8
15 TraesCS3B01G220200 chr6B 87.500 72 8 1 4330 4401 71874563 71874633 1.110000e-11 82.4
16 TraesCS3B01G220200 chr6B 95.652 46 2 0 4544 4589 22644903 22644858 1.860000e-09 75.0
17 TraesCS3B01G220200 chr2A 87.324 71 7 2 4338 4407 102112008 102112077 4.000000e-11 80.5
18 TraesCS3B01G220200 chr2A 88.889 45 5 0 4545 4589 381411548 381411592 6.740000e-04 56.5
19 TraesCS3B01G220200 chr6D 85.714 70 8 2 4338 4407 387629860 387629793 6.690000e-09 73.1
20 TraesCS3B01G220200 chr6A 93.750 48 3 0 4360 4407 593425417 593425464 6.690000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G220200 chr3B 268054065 268058885 4820 False 8903.000000 8903 100.000 1 4821 1 chr3B.!!$F1 4820
1 TraesCS3B01G220200 chr3A 239956555 239960817 4262 True 2278.333333 4252 95.346 526 4821 3 chr3A.!!$R1 4295
2 TraesCS3B01G220200 chr3D 186941050 186946847 5797 False 2226.000000 4000 93.980 641 4821 3 chr3D.!!$F2 4180

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
404 405 0.036294 GACCACGGGAAAGAGAAGGG 60.036 60.000 0.00 0.0 0.00 3.95 F
484 485 0.043334 CAAGGGAGAGAGGGGAAGGA 59.957 60.000 0.00 0.0 0.00 3.36 F
519 520 0.100682 TTGAGTATGACGCGAGCTCC 59.899 55.000 15.93 0.0 0.00 4.70 F
520 521 1.008309 GAGTATGACGCGAGCTCCC 60.008 63.158 15.93 0.0 0.00 4.30 F
2446 3970 0.188587 AGGGTCAGTGACAGGACTCA 59.811 55.000 24.20 0.0 36.97 3.41 F
2528 4052 0.393077 CTTGGGACTGTCTGGTTCGT 59.607 55.000 7.85 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1257 1266 0.039180 TCCTTACCGAGTCCAGCAGA 59.961 55.000 0.00 0.0 0.00 4.26 R
2006 2024 2.962859 ACCAAAGGCAAACTGGAAGAT 58.037 42.857 0.87 0.0 37.43 2.40 R
2446 3970 4.096382 GTGTATCAGGAATGGCGAAAATGT 59.904 41.667 0.00 0.0 0.00 2.71 R
2528 4052 4.738998 CCTTGGCCGCCCATGTCA 62.739 66.667 7.03 0.0 41.78 3.58 R
3543 5084 0.035458 AGTACACCCTGCAAGACAGC 59.965 55.000 0.00 0.0 45.78 4.40 R
4045 5587 0.036306 CATCCCTATACAACCGGCCC 59.964 60.000 0.00 0.0 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.779733 GAGGAGGGCCACCGGAGA 62.780 72.222 9.46 0.00 43.47 3.71
19 20 4.787280 AGGAGGGCCACCGGAGAG 62.787 72.222 9.46 0.00 43.47 3.20
52 53 2.446802 CCCCCTCCCTACCAGAGC 60.447 72.222 0.00 0.00 0.00 4.09
53 54 2.368594 CCCCTCCCTACCAGAGCA 59.631 66.667 0.00 0.00 0.00 4.26
54 55 2.066999 CCCCTCCCTACCAGAGCAC 61.067 68.421 0.00 0.00 0.00 4.40
55 56 1.306141 CCCTCCCTACCAGAGCACA 60.306 63.158 0.00 0.00 0.00 4.57
56 57 1.333636 CCCTCCCTACCAGAGCACAG 61.334 65.000 0.00 0.00 0.00 3.66
57 58 1.519719 CTCCCTACCAGAGCACAGC 59.480 63.158 0.00 0.00 0.00 4.40
58 59 2.185350 CCCTACCAGAGCACAGCG 59.815 66.667 0.00 0.00 0.00 5.18
59 60 2.351244 CCCTACCAGAGCACAGCGA 61.351 63.158 0.00 0.00 0.00 4.93
60 61 1.153745 CCTACCAGAGCACAGCGAC 60.154 63.158 0.00 0.00 0.00 5.19
61 62 1.515088 CTACCAGAGCACAGCGACG 60.515 63.158 0.00 0.00 0.00 5.12
62 63 3.626680 TACCAGAGCACAGCGACGC 62.627 63.158 13.03 13.03 0.00 5.19
87 88 4.742201 GGAGACGAAGCCGCAGCA 62.742 66.667 0.00 0.00 43.56 4.41
88 89 3.482783 GAGACGAAGCCGCAGCAC 61.483 66.667 0.00 0.00 43.56 4.40
131 132 4.864334 CCAGCCATCCGCCTCCAC 62.864 72.222 0.00 0.00 38.78 4.02
132 133 4.864334 CAGCCATCCGCCTCCACC 62.864 72.222 0.00 0.00 38.78 4.61
134 135 4.195334 GCCATCCGCCTCCACCAT 62.195 66.667 0.00 0.00 0.00 3.55
135 136 2.203252 CCATCCGCCTCCACCATG 60.203 66.667 0.00 0.00 0.00 3.66
136 137 2.203252 CATCCGCCTCCACCATGG 60.203 66.667 11.19 11.19 39.43 3.66
137 138 3.492353 ATCCGCCTCCACCATGGG 61.492 66.667 18.09 4.89 38.32 4.00
143 144 4.489771 CTCCACCATGGGCCCGAC 62.490 72.222 19.37 0.00 38.32 4.79
146 147 4.838152 CACCATGGGCCCGACGAG 62.838 72.222 19.37 6.42 0.00 4.18
176 177 2.100991 GCCAGGAGCGAATTTGCG 59.899 61.111 12.05 0.00 40.67 4.85
184 185 2.574212 CGAATTTGCGCTGCCGAC 60.574 61.111 9.73 0.00 36.29 4.79
185 186 2.202479 GAATTTGCGCTGCCGACC 60.202 61.111 9.73 0.00 36.29 4.79
186 187 3.683587 GAATTTGCGCTGCCGACCC 62.684 63.158 9.73 0.00 36.29 4.46
229 230 3.610669 CCTCAGGGATCGGCCGAG 61.611 72.222 33.87 19.36 37.63 4.63
230 231 3.610669 CTCAGGGATCGGCCGAGG 61.611 72.222 33.87 18.91 37.63 4.63
248 249 4.111053 GGGGGAAGGGAACGCCTC 62.111 72.222 0.00 0.00 39.73 4.70
249 250 4.111053 GGGGAAGGGAACGCCTCC 62.111 72.222 0.00 0.00 44.54 4.30
250 251 4.468689 GGGAAGGGAACGCCTCCG 62.469 72.222 0.00 0.00 46.51 4.63
251 252 3.387947 GGAAGGGAACGCCTCCGA 61.388 66.667 0.00 0.00 46.51 4.55
252 253 2.184579 GAAGGGAACGCCTCCGAG 59.815 66.667 0.00 0.00 46.51 4.63
253 254 2.603776 AAGGGAACGCCTCCGAGT 60.604 61.111 0.00 0.00 46.51 4.18
254 255 2.560051 GAAGGGAACGCCTCCGAGTC 62.560 65.000 0.00 0.00 46.51 3.36
255 256 4.144703 GGGAACGCCTCCGAGTCC 62.145 72.222 0.00 0.00 46.51 3.85
256 257 4.493747 GGAACGCCTCCGAGTCCG 62.494 72.222 4.66 4.66 38.29 4.79
257 258 3.437795 GAACGCCTCCGAGTCCGA 61.438 66.667 11.34 0.00 38.22 4.55
258 259 3.680338 GAACGCCTCCGAGTCCGAC 62.680 68.421 11.34 0.00 38.22 4.79
262 263 3.141488 CCTCCGAGTCCGACCCAG 61.141 72.222 0.00 0.00 38.22 4.45
263 264 2.045242 CTCCGAGTCCGACCCAGA 60.045 66.667 0.00 0.00 38.22 3.86
264 265 1.454111 CTCCGAGTCCGACCCAGAT 60.454 63.158 0.00 0.00 38.22 2.90
265 266 1.448922 CTCCGAGTCCGACCCAGATC 61.449 65.000 0.00 0.00 38.22 2.75
266 267 2.491022 CCGAGTCCGACCCAGATCC 61.491 68.421 0.00 0.00 38.22 3.36
267 268 1.753078 CGAGTCCGACCCAGATCCA 60.753 63.158 0.00 0.00 38.22 3.41
268 269 1.109920 CGAGTCCGACCCAGATCCAT 61.110 60.000 0.00 0.00 38.22 3.41
269 270 1.123928 GAGTCCGACCCAGATCCATT 58.876 55.000 0.00 0.00 0.00 3.16
270 271 1.069358 GAGTCCGACCCAGATCCATTC 59.931 57.143 0.00 0.00 0.00 2.67
271 272 0.249489 GTCCGACCCAGATCCATTCG 60.249 60.000 0.00 0.00 0.00 3.34
272 273 0.396556 TCCGACCCAGATCCATTCGA 60.397 55.000 5.46 0.00 0.00 3.71
273 274 0.464036 CCGACCCAGATCCATTCGAA 59.536 55.000 0.00 0.00 0.00 3.71
274 275 1.070758 CCGACCCAGATCCATTCGAAT 59.929 52.381 4.39 4.39 0.00 3.34
275 276 2.408050 CGACCCAGATCCATTCGAATC 58.592 52.381 7.92 0.00 0.00 2.52
276 277 2.408050 GACCCAGATCCATTCGAATCG 58.592 52.381 7.92 1.23 0.00 3.34
277 278 2.035961 GACCCAGATCCATTCGAATCGA 59.964 50.000 7.92 7.93 0.00 3.59
278 279 2.036475 ACCCAGATCCATTCGAATCGAG 59.964 50.000 7.92 0.18 37.14 4.04
279 280 2.064762 CCAGATCCATTCGAATCGAGC 58.935 52.381 12.33 12.33 37.14 5.03
280 281 1.718178 CAGATCCATTCGAATCGAGCG 59.282 52.381 13.97 6.85 37.14 5.03
281 282 0.436531 GATCCATTCGAATCGAGCGC 59.563 55.000 7.92 0.00 37.14 5.92
282 283 0.946221 ATCCATTCGAATCGAGCGCC 60.946 55.000 7.92 0.00 37.14 6.53
283 284 2.598632 CCATTCGAATCGAGCGCCC 61.599 63.158 7.92 0.00 37.14 6.13
284 285 1.882625 CATTCGAATCGAGCGCCCA 60.883 57.895 7.92 0.00 37.14 5.36
285 286 1.153449 ATTCGAATCGAGCGCCCAA 60.153 52.632 4.39 0.00 37.14 4.12
286 287 0.742990 ATTCGAATCGAGCGCCCAAA 60.743 50.000 4.39 0.00 37.14 3.28
287 288 0.951525 TTCGAATCGAGCGCCCAAAA 60.952 50.000 2.29 0.00 37.14 2.44
288 289 1.226018 CGAATCGAGCGCCCAAAAC 60.226 57.895 2.29 0.00 0.00 2.43
289 290 1.136774 GAATCGAGCGCCCAAAACC 59.863 57.895 2.29 0.00 0.00 3.27
290 291 1.303317 AATCGAGCGCCCAAAACCT 60.303 52.632 2.29 0.00 0.00 3.50
291 292 1.586154 AATCGAGCGCCCAAAACCTG 61.586 55.000 2.29 0.00 0.00 4.00
292 293 2.748058 ATCGAGCGCCCAAAACCTGT 62.748 55.000 2.29 0.00 0.00 4.00
293 294 2.551912 CGAGCGCCCAAAACCTGTT 61.552 57.895 2.29 0.00 0.00 3.16
294 295 1.007387 GAGCGCCCAAAACCTGTTG 60.007 57.895 2.29 0.00 0.00 3.33
295 296 2.028925 GCGCCCAAAACCTGTTGG 59.971 61.111 0.00 0.00 46.57 3.77
296 297 2.028925 CGCCCAAAACCTGTTGGC 59.971 61.111 0.00 0.00 45.80 4.52
297 298 2.790791 CGCCCAAAACCTGTTGGCA 61.791 57.895 9.63 0.00 45.80 4.92
298 299 1.227527 GCCCAAAACCTGTTGGCAC 60.228 57.895 5.30 0.00 45.80 5.01
299 300 1.067250 CCCAAAACCTGTTGGCACG 59.933 57.895 0.00 0.00 45.80 5.34
300 301 1.067250 CCAAAACCTGTTGGCACGG 59.933 57.895 0.00 0.00 41.63 4.94
306 307 2.429930 CTGTTGGCACGGGAAGGA 59.570 61.111 0.00 0.00 0.00 3.36
307 308 1.672356 CTGTTGGCACGGGAAGGAG 60.672 63.158 0.00 0.00 0.00 3.69
308 309 3.056328 GTTGGCACGGGAAGGAGC 61.056 66.667 0.00 0.00 0.00 4.70
309 310 4.697756 TTGGCACGGGAAGGAGCG 62.698 66.667 0.00 0.00 0.00 5.03
311 312 4.821589 GGCACGGGAAGGAGCGAG 62.822 72.222 0.00 0.00 0.00 5.03
312 313 4.821589 GCACGGGAAGGAGCGAGG 62.822 72.222 0.00 0.00 0.00 4.63
313 314 3.068691 CACGGGAAGGAGCGAGGA 61.069 66.667 0.00 0.00 0.00 3.71
314 315 2.756283 ACGGGAAGGAGCGAGGAG 60.756 66.667 0.00 0.00 0.00 3.69
315 316 3.532155 CGGGAAGGAGCGAGGAGG 61.532 72.222 0.00 0.00 0.00 4.30
316 317 2.042843 GGGAAGGAGCGAGGAGGA 60.043 66.667 0.00 0.00 0.00 3.71
317 318 2.428085 GGGAAGGAGCGAGGAGGAC 61.428 68.421 0.00 0.00 0.00 3.85
318 319 2.776913 GGAAGGAGCGAGGAGGACG 61.777 68.421 0.00 0.00 0.00 4.79
319 320 2.035940 AAGGAGCGAGGAGGACGT 59.964 61.111 0.00 0.00 0.00 4.34
320 321 0.747283 GAAGGAGCGAGGAGGACGTA 60.747 60.000 0.00 0.00 0.00 3.57
321 322 0.748729 AAGGAGCGAGGAGGACGTAG 60.749 60.000 0.00 0.00 0.00 3.51
322 323 2.716864 GAGCGAGGAGGACGTAGC 59.283 66.667 0.00 0.00 33.93 3.58
323 324 3.170810 GAGCGAGGAGGACGTAGCG 62.171 68.421 0.00 0.00 37.53 4.26
324 325 3.200593 GCGAGGAGGACGTAGCGA 61.201 66.667 0.00 0.00 0.00 4.93
325 326 3.015677 CGAGGAGGACGTAGCGAG 58.984 66.667 0.00 0.00 0.00 5.03
326 327 2.535788 CGAGGAGGACGTAGCGAGG 61.536 68.421 0.00 0.00 0.00 4.63
327 328 2.829458 AGGAGGACGTAGCGAGGC 60.829 66.667 0.00 0.00 0.00 4.70
328 329 4.253257 GGAGGACGTAGCGAGGCG 62.253 72.222 0.00 0.00 0.00 5.52
329 330 3.200593 GAGGACGTAGCGAGGCGA 61.201 66.667 0.00 0.00 0.00 5.54
330 331 3.170810 GAGGACGTAGCGAGGCGAG 62.171 68.421 0.00 0.00 0.00 5.03
331 332 4.253257 GGACGTAGCGAGGCGAGG 62.253 72.222 0.00 0.00 0.00 4.63
332 333 4.908877 GACGTAGCGAGGCGAGGC 62.909 72.222 0.00 0.00 0.00 4.70
343 344 4.785453 GCGAGGCCACAGGGGAAG 62.785 72.222 5.01 0.00 40.01 3.46
344 345 3.003173 CGAGGCCACAGGGGAAGA 61.003 66.667 5.01 0.00 40.01 2.87
345 346 2.993853 GAGGCCACAGGGGAAGAG 59.006 66.667 5.01 0.00 40.01 2.85
346 347 2.612115 AGGCCACAGGGGAAGAGG 60.612 66.667 5.01 0.00 40.01 3.69
347 348 3.732849 GGCCACAGGGGAAGAGGG 61.733 72.222 0.00 0.00 40.01 4.30
348 349 3.732849 GCCACAGGGGAAGAGGGG 61.733 72.222 0.00 0.00 40.01 4.79
349 350 3.017581 CCACAGGGGAAGAGGGGG 61.018 72.222 0.00 0.00 40.01 5.40
350 351 2.124996 CACAGGGGAAGAGGGGGA 59.875 66.667 0.00 0.00 0.00 4.81
351 352 1.541368 CACAGGGGAAGAGGGGGAA 60.541 63.158 0.00 0.00 0.00 3.97
352 353 1.229984 ACAGGGGAAGAGGGGGAAG 60.230 63.158 0.00 0.00 0.00 3.46
353 354 2.286502 AGGGGAAGAGGGGGAAGC 60.287 66.667 0.00 0.00 0.00 3.86
354 355 3.798511 GGGGAAGAGGGGGAAGCG 61.799 72.222 0.00 0.00 0.00 4.68
355 356 3.798511 GGGAAGAGGGGGAAGCGG 61.799 72.222 0.00 0.00 0.00 5.52
356 357 3.798511 GGAAGAGGGGGAAGCGGG 61.799 72.222 0.00 0.00 0.00 6.13
357 358 2.687566 GAAGAGGGGGAAGCGGGA 60.688 66.667 0.00 0.00 0.00 5.14
358 359 3.009714 AAGAGGGGGAAGCGGGAC 61.010 66.667 0.00 0.00 0.00 4.46
383 384 3.083997 CGGGGAGGAACCAGGAGG 61.084 72.222 0.00 0.00 41.20 4.30
384 385 2.454941 GGGGAGGAACCAGGAGGA 59.545 66.667 0.00 0.00 41.20 3.71
385 386 1.690985 GGGGAGGAACCAGGAGGAG 60.691 68.421 0.00 0.00 41.20 3.69
386 387 1.392534 GGGAGGAACCAGGAGGAGA 59.607 63.158 0.00 0.00 41.20 3.71
387 388 0.978667 GGGAGGAACCAGGAGGAGAC 60.979 65.000 0.00 0.00 41.20 3.36
388 389 0.978667 GGAGGAACCAGGAGGAGACC 60.979 65.000 0.00 0.00 38.69 3.85
389 390 0.252284 GAGGAACCAGGAGGAGACCA 60.252 60.000 0.00 0.00 38.69 4.02
390 391 0.545548 AGGAACCAGGAGGAGACCAC 60.546 60.000 0.00 0.00 38.69 4.16
391 392 1.592223 GAACCAGGAGGAGACCACG 59.408 63.158 0.00 0.00 38.69 4.94
392 393 1.889530 GAACCAGGAGGAGACCACGG 61.890 65.000 0.00 0.00 38.69 4.94
393 394 3.077556 CCAGGAGGAGACCACGGG 61.078 72.222 0.00 0.00 36.89 5.28
394 395 2.037367 CAGGAGGAGACCACGGGA 59.963 66.667 0.00 0.00 0.00 5.14
395 396 1.609501 CAGGAGGAGACCACGGGAA 60.610 63.158 0.00 0.00 0.00 3.97
396 397 1.157751 AGGAGGAGACCACGGGAAA 59.842 57.895 0.00 0.00 0.00 3.13
397 398 0.905337 AGGAGGAGACCACGGGAAAG 60.905 60.000 0.00 0.00 0.00 2.62
398 399 0.903454 GGAGGAGACCACGGGAAAGA 60.903 60.000 0.00 0.00 0.00 2.52
399 400 0.533032 GAGGAGACCACGGGAAAGAG 59.467 60.000 0.00 0.00 0.00 2.85
400 401 0.114560 AGGAGACCACGGGAAAGAGA 59.885 55.000 0.00 0.00 0.00 3.10
401 402 0.974383 GGAGACCACGGGAAAGAGAA 59.026 55.000 0.00 0.00 0.00 2.87
402 403 1.066787 GGAGACCACGGGAAAGAGAAG 60.067 57.143 0.00 0.00 0.00 2.85
403 404 0.977395 AGACCACGGGAAAGAGAAGG 59.023 55.000 0.00 0.00 0.00 3.46
404 405 0.036294 GACCACGGGAAAGAGAAGGG 60.036 60.000 0.00 0.00 0.00 3.95
405 406 1.299976 CCACGGGAAAGAGAAGGGG 59.700 63.158 0.00 0.00 0.00 4.79
406 407 1.299976 CACGGGAAAGAGAAGGGGG 59.700 63.158 0.00 0.00 0.00 5.40
407 408 1.160145 ACGGGAAAGAGAAGGGGGA 59.840 57.895 0.00 0.00 0.00 4.81
408 409 0.475048 ACGGGAAAGAGAAGGGGGAA 60.475 55.000 0.00 0.00 0.00 3.97
409 410 0.253327 CGGGAAAGAGAAGGGGGAAG 59.747 60.000 0.00 0.00 0.00 3.46
410 411 1.670059 GGGAAAGAGAAGGGGGAAGA 58.330 55.000 0.00 0.00 0.00 2.87
411 412 1.993301 GGGAAAGAGAAGGGGGAAGAA 59.007 52.381 0.00 0.00 0.00 2.52
412 413 2.025793 GGGAAAGAGAAGGGGGAAGAAG 60.026 54.545 0.00 0.00 0.00 2.85
413 414 2.619332 GGAAAGAGAAGGGGGAAGAAGC 60.619 54.545 0.00 0.00 0.00 3.86
414 415 0.995803 AAGAGAAGGGGGAAGAAGCC 59.004 55.000 0.00 0.00 0.00 4.35
415 416 1.222113 GAGAAGGGGGAAGAAGCCG 59.778 63.158 0.00 0.00 0.00 5.52
416 417 2.438614 GAAGGGGGAAGAAGCCGC 60.439 66.667 0.00 0.00 39.94 6.53
417 418 3.256960 AAGGGGGAAGAAGCCGCA 61.257 61.111 0.00 0.00 42.25 5.69
418 419 3.569200 AAGGGGGAAGAAGCCGCAC 62.569 63.158 0.00 0.00 42.25 5.34
420 421 4.388499 GGGGAAGAAGCCGCACGA 62.388 66.667 0.00 0.00 40.36 4.35
421 422 2.815647 GGGAAGAAGCCGCACGAG 60.816 66.667 0.00 0.00 0.00 4.18
422 423 2.815647 GGAAGAAGCCGCACGAGG 60.816 66.667 0.00 0.00 0.00 4.63
473 474 4.373116 GCGTCGCCACAAGGGAGA 62.373 66.667 5.75 0.00 43.88 3.71
474 475 2.125912 CGTCGCCACAAGGGAGAG 60.126 66.667 0.00 0.00 46.91 3.20
475 476 2.636412 CGTCGCCACAAGGGAGAGA 61.636 63.158 0.00 0.00 46.91 3.10
476 477 1.216710 GTCGCCACAAGGGAGAGAG 59.783 63.158 0.00 0.00 46.91 3.20
477 478 1.984570 TCGCCACAAGGGAGAGAGG 60.985 63.158 0.00 0.00 40.93 3.69
478 479 2.993853 GCCACAAGGGAGAGAGGG 59.006 66.667 0.00 0.00 40.01 4.30
479 480 2.674220 GCCACAAGGGAGAGAGGGG 61.674 68.421 0.00 0.00 40.01 4.79
480 481 1.081092 CCACAAGGGAGAGAGGGGA 59.919 63.158 0.00 0.00 40.01 4.81
481 482 0.547712 CCACAAGGGAGAGAGGGGAA 60.548 60.000 0.00 0.00 40.01 3.97
482 483 0.908198 CACAAGGGAGAGAGGGGAAG 59.092 60.000 0.00 0.00 0.00 3.46
483 484 0.252927 ACAAGGGAGAGAGGGGAAGG 60.253 60.000 0.00 0.00 0.00 3.46
484 485 0.043334 CAAGGGAGAGAGGGGAAGGA 59.957 60.000 0.00 0.00 0.00 3.36
485 486 0.341609 AAGGGAGAGAGGGGAAGGAG 59.658 60.000 0.00 0.00 0.00 3.69
486 487 0.556380 AGGGAGAGAGGGGAAGGAGA 60.556 60.000 0.00 0.00 0.00 3.71
487 488 0.397957 GGGAGAGAGGGGAAGGAGAC 60.398 65.000 0.00 0.00 0.00 3.36
488 489 0.336737 GGAGAGAGGGGAAGGAGACA 59.663 60.000 0.00 0.00 0.00 3.41
489 490 1.062505 GGAGAGAGGGGAAGGAGACAT 60.063 57.143 0.00 0.00 0.00 3.06
490 491 2.316108 GAGAGAGGGGAAGGAGACATC 58.684 57.143 0.00 0.00 0.00 3.06
491 492 1.936631 AGAGAGGGGAAGGAGACATCT 59.063 52.381 0.00 0.00 0.00 2.90
492 493 2.091333 AGAGAGGGGAAGGAGACATCTC 60.091 54.545 0.00 0.00 42.14 2.75
505 506 5.590530 GAGACATCTCCATAGTGTTGAGT 57.409 43.478 0.00 0.00 37.02 3.41
506 507 6.701145 GAGACATCTCCATAGTGTTGAGTA 57.299 41.667 0.00 0.00 37.02 2.59
507 508 7.283625 GAGACATCTCCATAGTGTTGAGTAT 57.716 40.000 0.00 0.00 37.02 2.12
508 509 7.048629 AGACATCTCCATAGTGTTGAGTATG 57.951 40.000 0.00 0.00 35.84 2.39
509 510 6.836007 AGACATCTCCATAGTGTTGAGTATGA 59.164 38.462 0.00 0.00 37.60 2.15
510 511 6.810911 ACATCTCCATAGTGTTGAGTATGAC 58.189 40.000 0.00 0.00 37.60 3.06
511 512 5.500645 TCTCCATAGTGTTGAGTATGACG 57.499 43.478 0.00 0.00 37.60 4.35
512 513 4.041740 TCCATAGTGTTGAGTATGACGC 57.958 45.455 0.00 0.00 37.60 5.19
513 514 2.789339 CCATAGTGTTGAGTATGACGCG 59.211 50.000 3.53 3.53 37.60 6.01
514 515 3.488553 CCATAGTGTTGAGTATGACGCGA 60.489 47.826 15.93 0.00 37.60 5.87
515 516 2.264109 AGTGTTGAGTATGACGCGAG 57.736 50.000 15.93 0.00 0.00 5.03
516 517 0.640768 GTGTTGAGTATGACGCGAGC 59.359 55.000 15.93 4.68 0.00 5.03
517 518 0.526211 TGTTGAGTATGACGCGAGCT 59.474 50.000 15.93 2.40 0.00 4.09
518 519 1.192793 GTTGAGTATGACGCGAGCTC 58.807 55.000 15.93 12.58 0.00 4.09
519 520 0.100682 TTGAGTATGACGCGAGCTCC 59.899 55.000 15.93 0.00 0.00 4.70
520 521 1.008309 GAGTATGACGCGAGCTCCC 60.008 63.158 15.93 0.00 0.00 4.30
521 522 2.027751 GTATGACGCGAGCTCCCC 59.972 66.667 15.93 0.00 0.00 4.81
522 523 2.441348 TATGACGCGAGCTCCCCA 60.441 61.111 15.93 1.28 0.00 4.96
523 524 2.782222 TATGACGCGAGCTCCCCAC 61.782 63.158 15.93 0.00 0.00 4.61
540 541 3.624777 CCCACCTTGCTAGTTCATGAAT 58.375 45.455 12.12 3.70 0.00 2.57
543 544 5.066505 CCCACCTTGCTAGTTCATGAATTAC 59.933 44.000 12.12 7.36 0.00 1.89
558 559 7.618442 TCATGAATTACTCGATTACGCTTTTC 58.382 34.615 0.00 0.00 39.58 2.29
560 561 7.534085 TGAATTACTCGATTACGCTTTTCAT 57.466 32.000 0.00 0.00 39.58 2.57
594 595 9.905713 AGGCATAAACTTGAAGAAGATATTGTA 57.094 29.630 0.00 0.00 32.98 2.41
620 621 9.739276 ATAAACTTGAAGGAGATATTGTGTTGA 57.261 29.630 0.00 0.00 0.00 3.18
621 622 8.641498 AAACTTGAAGGAGATATTGTGTTGAT 57.359 30.769 0.00 0.00 0.00 2.57
622 623 8.641498 AACTTGAAGGAGATATTGTGTTGATT 57.359 30.769 0.00 0.00 0.00 2.57
623 624 8.641498 ACTTGAAGGAGATATTGTGTTGATTT 57.359 30.769 0.00 0.00 0.00 2.17
624 625 9.082313 ACTTGAAGGAGATATTGTGTTGATTTT 57.918 29.630 0.00 0.00 0.00 1.82
625 626 9.918630 CTTGAAGGAGATATTGTGTTGATTTTT 57.081 29.630 0.00 0.00 0.00 1.94
626 627 9.912634 TTGAAGGAGATATTGTGTTGATTTTTC 57.087 29.630 0.00 0.00 0.00 2.29
627 628 9.300681 TGAAGGAGATATTGTGTTGATTTTTCT 57.699 29.630 0.00 0.00 0.00 2.52
637 638 7.504922 TGTGTTGATTTTTCTTTTGACTTCG 57.495 32.000 0.00 0.00 0.00 3.79
638 639 7.087639 TGTGTTGATTTTTCTTTTGACTTCGT 58.912 30.769 0.00 0.00 0.00 3.85
639 640 7.061673 TGTGTTGATTTTTCTTTTGACTTCGTG 59.938 33.333 0.00 0.00 0.00 4.35
684 685 3.072622 GTCCCTCTAAAAAGTGTCCCTGT 59.927 47.826 0.00 0.00 0.00 4.00
707 708 1.741706 AGAAATGCAACGCAGATGAGG 59.258 47.619 0.00 0.00 43.65 3.86
795 796 1.210931 GACACAATCGTCCCGTCGA 59.789 57.895 0.00 0.00 43.86 4.20
833 834 1.991230 CCATTCGTCTTCCCCAGGT 59.009 57.895 0.00 0.00 0.00 4.00
1099 1108 3.760035 GCTCGCCGTCCCAGAGAA 61.760 66.667 0.00 0.00 34.13 2.87
1615 1624 1.051812 ACTCAGGTCTGTGGTTCAGG 58.948 55.000 5.26 0.00 43.76 3.86
1655 1668 3.138884 TGGTTCATACTGTGCACACAT 57.861 42.857 17.42 9.45 41.01 3.21
1896 1913 2.274542 TGGGAATTGGAGAGGTAAGCA 58.725 47.619 0.00 0.00 0.00 3.91
2006 2024 5.301551 AGTTGAACATTTGGTGCATTCTGTA 59.698 36.000 0.00 0.00 34.10 2.74
2083 3607 1.294659 CTGCTCAAGTGCTTCCCGAC 61.295 60.000 0.00 0.00 0.00 4.79
2143 3667 3.755378 GTCCTGTCTGAATTTGCTGTGAT 59.245 43.478 0.00 0.00 0.00 3.06
2446 3970 0.188587 AGGGTCAGTGACAGGACTCA 59.811 55.000 24.20 0.00 36.97 3.41
2528 4052 0.393077 CTTGGGACTGTCTGGTTCGT 59.607 55.000 7.85 0.00 0.00 3.85
2623 4147 8.344831 TGTCTGAATTTGTTGTCTGTTATCTTG 58.655 33.333 0.00 0.00 0.00 3.02
2642 4166 6.145338 TCTTGAAAGGCTTATAGTACTCCG 57.855 41.667 0.00 0.00 0.00 4.63
2753 4277 4.495184 GGAGTAATATTGTCAAAACCGCCG 60.495 45.833 0.00 0.00 0.00 6.46
2996 4520 2.676076 ACAATGGCGATTTCTGCAAAC 58.324 42.857 0.00 0.00 0.00 2.93
3139 4678 6.263168 AGGATCCAGTTTTTGAACTTGTACTG 59.737 38.462 15.82 0.00 34.32 2.74
3417 4956 6.438259 TTTTCTCAGTCTGGTCTATACTCG 57.562 41.667 0.00 0.00 0.00 4.18
3458 4997 3.373130 CCTCGATACGCCGTAATCATCTA 59.627 47.826 0.00 0.00 0.00 1.98
3501 5040 6.366332 CGGTGCACTATAATCTTAGATGTTCC 59.634 42.308 17.98 0.00 0.00 3.62
3543 5084 4.278170 TGCTACCAAAAGGTGATGAACTTG 59.722 41.667 0.00 0.00 0.00 3.16
3672 5213 5.801947 TGATCCTAAACTCTTTACGTTACGC 59.198 40.000 4.09 0.00 0.00 4.42
3854 5396 2.930682 GCTTCTGGTTAACGACTCATCC 59.069 50.000 0.00 0.00 0.00 3.51
3855 5397 3.522553 CTTCTGGTTAACGACTCATCCC 58.477 50.000 0.00 0.00 0.00 3.85
3856 5398 2.531771 TCTGGTTAACGACTCATCCCA 58.468 47.619 0.00 0.00 0.00 4.37
3870 5412 4.215908 CTCATCCCACCTGCTAGTAGTAA 58.784 47.826 7.10 0.00 0.00 2.24
4030 5572 4.994907 TGAAATGGAGCATGAATTGAGG 57.005 40.909 0.00 0.00 0.00 3.86
4036 5578 2.295885 GAGCATGAATTGAGGACAGGG 58.704 52.381 0.00 0.00 0.00 4.45
4038 5580 2.512896 AGCATGAATTGAGGACAGGGAT 59.487 45.455 0.00 0.00 0.00 3.85
4045 5587 3.746949 GAGGACAGGGATGCGCAGG 62.747 68.421 18.32 5.22 0.00 4.85
4131 5673 3.617540 CACGCATAGTGTTTTTGACCA 57.382 42.857 0.00 0.00 45.51 4.02
4426 5975 4.630894 TTCAAGCTTCACGACAATGTTT 57.369 36.364 0.00 0.00 0.00 2.83
4436 5985 4.636648 TCACGACAATGTTTGTTTAGTGGT 59.363 37.500 16.69 0.00 45.52 4.16
4455 6030 5.652891 AGTGGTAGATGTTCTCGTTGACTAT 59.347 40.000 0.00 0.00 0.00 2.12
4461 6036 6.455647 AGATGTTCTCGTTGACTATGAAACA 58.544 36.000 0.00 0.00 32.51 2.83
4462 6037 5.900339 TGTTCTCGTTGACTATGAAACAC 57.100 39.130 0.00 0.00 0.00 3.32
4463 6038 5.353111 TGTTCTCGTTGACTATGAAACACA 58.647 37.500 0.00 0.00 0.00 3.72
4464 6039 5.989168 TGTTCTCGTTGACTATGAAACACAT 59.011 36.000 0.00 0.00 42.39 3.21
4465 6040 6.073819 TGTTCTCGTTGACTATGAAACACATG 60.074 38.462 0.00 0.00 39.77 3.21
4466 6041 5.538118 TCTCGTTGACTATGAAACACATGT 58.462 37.500 0.00 0.00 39.77 3.21
4467 6042 5.405269 TCTCGTTGACTATGAAACACATGTG 59.595 40.000 24.25 24.25 39.77 3.21
4468 6043 4.450757 TCGTTGACTATGAAACACATGTGG 59.549 41.667 28.64 12.06 39.77 4.17
4469 6044 4.213270 CGTTGACTATGAAACACATGTGGT 59.787 41.667 28.64 21.46 39.77 4.16
4470 6045 5.277779 CGTTGACTATGAAACACATGTGGTT 60.278 40.000 28.72 28.72 44.30 3.67
4471 6046 5.687770 TGACTATGAAACACATGTGGTTG 57.312 39.130 32.93 20.20 41.20 3.77
4472 6047 4.023279 TGACTATGAAACACATGTGGTTGC 60.023 41.667 32.93 22.48 41.20 4.17
4473 6048 4.144297 ACTATGAAACACATGTGGTTGCT 58.856 39.130 32.93 20.66 41.20 3.91
4474 6049 4.584325 ACTATGAAACACATGTGGTTGCTT 59.416 37.500 32.93 21.38 41.20 3.91
4475 6050 3.435105 TGAAACACATGTGGTTGCTTC 57.565 42.857 32.93 19.00 41.20 3.86
4476 6051 2.223456 TGAAACACATGTGGTTGCTTCG 60.223 45.455 32.93 2.99 41.20 3.79
4477 6052 1.388547 AACACATGTGGTTGCTTCGT 58.611 45.000 28.64 2.30 34.19 3.85
4478 6053 0.944386 ACACATGTGGTTGCTTCGTC 59.056 50.000 28.64 0.00 34.19 4.20
4479 6054 0.943673 CACATGTGGTTGCTTCGTCA 59.056 50.000 18.51 0.00 0.00 4.35
4480 6055 1.333308 CACATGTGGTTGCTTCGTCAA 59.667 47.619 18.51 0.00 0.00 3.18
4481 6056 2.020720 ACATGTGGTTGCTTCGTCAAA 58.979 42.857 0.00 0.00 0.00 2.69
4482 6057 2.622942 ACATGTGGTTGCTTCGTCAAAT 59.377 40.909 0.00 0.00 0.00 2.32
4483 6058 3.236816 CATGTGGTTGCTTCGTCAAATC 58.763 45.455 0.00 0.00 0.00 2.17
4484 6059 2.571212 TGTGGTTGCTTCGTCAAATCT 58.429 42.857 0.00 0.00 0.00 2.40
4485 6060 3.734463 TGTGGTTGCTTCGTCAAATCTA 58.266 40.909 0.00 0.00 0.00 1.98
4486 6061 4.130857 TGTGGTTGCTTCGTCAAATCTAA 58.869 39.130 0.00 0.00 0.00 2.10
4487 6062 4.576873 TGTGGTTGCTTCGTCAAATCTAAA 59.423 37.500 0.00 0.00 0.00 1.85
4488 6063 5.147162 GTGGTTGCTTCGTCAAATCTAAAG 58.853 41.667 0.00 0.00 0.00 1.85
4489 6064 5.049680 GTGGTTGCTTCGTCAAATCTAAAGA 60.050 40.000 0.00 0.00 0.00 2.52
4490 6065 5.705441 TGGTTGCTTCGTCAAATCTAAAGAT 59.295 36.000 0.00 0.00 36.07 2.40
4491 6066 6.876789 TGGTTGCTTCGTCAAATCTAAAGATA 59.123 34.615 0.00 0.00 33.73 1.98
4513 6223 0.950836 TGTGGTGGCTTCGTCAAATG 59.049 50.000 0.00 0.00 0.00 2.32
4516 6226 2.159627 GTGGTGGCTTCGTCAAATGTAG 59.840 50.000 0.00 0.00 0.00 2.74
4528 6238 6.398095 TCGTCAAATGTAGAGATGTTGTGAT 58.602 36.000 0.00 0.00 0.00 3.06
4530 6240 6.311200 CGTCAAATGTAGAGATGTTGTGATCA 59.689 38.462 0.00 0.00 0.00 2.92
4534 6244 4.986622 TGTAGAGATGTTGTGATCACTCG 58.013 43.478 25.55 0.00 0.00 4.18
4568 6278 1.411612 GCTTATAGGCGTAGGGTGTGT 59.588 52.381 0.00 0.00 0.00 3.72
4572 6282 0.828762 TAGGCGTAGGGTGTGTGTGT 60.829 55.000 0.00 0.00 0.00 3.72
4574 6284 2.604174 GCGTAGGGTGTGTGTGTGC 61.604 63.158 0.00 0.00 0.00 4.57
4582 6294 1.600013 GGTGTGTGTGTGCGTTCATAA 59.400 47.619 0.00 0.00 0.00 1.90
4606 6318 1.535687 ACAGAACCGGTGGCTAGGT 60.536 57.895 8.52 1.13 43.68 3.08
4633 6345 2.033602 TCCTCGTCCTCTCACGCA 59.966 61.111 0.00 0.00 39.74 5.24
4701 6413 1.001503 CTCTCCTCCTGGCACTCCT 59.998 63.158 0.00 0.00 0.00 3.69
4709 6421 2.204291 TGGCACTCCTTCCCCCAT 60.204 61.111 0.00 0.00 0.00 4.00
4776 6488 2.972819 GCGGGGCCTCTTTCCTCTT 61.973 63.158 0.00 0.00 0.00 2.85
4777 6489 1.685820 CGGGGCCTCTTTCCTCTTT 59.314 57.895 0.00 0.00 0.00 2.52
4811 6523 0.107017 CTGGCTTGGGATGATTCCGT 60.107 55.000 0.00 0.00 43.63 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.779733 TCTCCGGTGGCCCTCCTC 62.780 72.222 0.00 0.00 0.00 3.71
2 3 4.787280 CTCTCCGGTGGCCCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
35 36 2.446802 GCTCTGGTAGGGAGGGGG 60.447 72.222 0.00 0.00 0.00 5.40
36 37 2.066999 GTGCTCTGGTAGGGAGGGG 61.067 68.421 0.00 0.00 0.00 4.79
37 38 1.306141 TGTGCTCTGGTAGGGAGGG 60.306 63.158 0.00 0.00 0.00 4.30
38 39 1.965754 GCTGTGCTCTGGTAGGGAGG 61.966 65.000 0.00 0.00 0.00 4.30
39 40 1.519719 GCTGTGCTCTGGTAGGGAG 59.480 63.158 0.00 0.00 0.00 4.30
40 41 2.351244 CGCTGTGCTCTGGTAGGGA 61.351 63.158 0.00 0.00 0.00 4.20
41 42 2.185350 CGCTGTGCTCTGGTAGGG 59.815 66.667 0.00 0.00 0.00 3.53
42 43 1.153745 GTCGCTGTGCTCTGGTAGG 60.154 63.158 0.00 0.00 0.00 3.18
43 44 1.515088 CGTCGCTGTGCTCTGGTAG 60.515 63.158 0.00 0.00 0.00 3.18
44 45 2.566529 CGTCGCTGTGCTCTGGTA 59.433 61.111 0.00 0.00 0.00 3.25
64 65 4.856607 GGCTTCGTCTCCGGCTCG 62.857 72.222 0.00 0.93 33.95 5.03
65 66 4.856607 CGGCTTCGTCTCCGGCTC 62.857 72.222 0.00 0.00 41.82 4.70
70 71 4.742201 TGCTGCGGCTTCGTCTCC 62.742 66.667 20.27 0.00 39.59 3.71
71 72 3.482783 GTGCTGCGGCTTCGTCTC 61.483 66.667 20.27 0.00 39.59 3.36
117 118 4.195334 ATGGTGGAGGCGGATGGC 62.195 66.667 0.00 0.00 42.51 4.40
118 119 2.203252 CATGGTGGAGGCGGATGG 60.203 66.667 0.00 0.00 0.00 3.51
119 120 2.203252 CCATGGTGGAGGCGGATG 60.203 66.667 2.57 0.00 40.96 3.51
120 121 3.492353 CCCATGGTGGAGGCGGAT 61.492 66.667 11.73 0.00 40.96 4.18
126 127 4.489771 GTCGGGCCCATGGTGGAG 62.490 72.222 24.92 1.98 40.96 3.86
129 130 4.838152 CTCGTCGGGCCCATGGTG 62.838 72.222 24.92 4.63 0.00 4.17
159 160 2.100991 CGCAAATTCGCTCCTGGC 59.899 61.111 0.00 0.00 37.64 4.85
167 168 2.574212 GTCGGCAGCGCAAATTCG 60.574 61.111 11.47 6.23 0.00 3.34
168 169 2.202479 GGTCGGCAGCGCAAATTC 60.202 61.111 11.47 0.00 0.00 2.17
169 170 3.747976 GGGTCGGCAGCGCAAATT 61.748 61.111 11.47 0.00 0.00 1.82
212 213 3.610669 CTCGGCCGATCCCTGAGG 61.611 72.222 31.19 10.70 0.00 3.86
213 214 3.610669 CCTCGGCCGATCCCTGAG 61.611 72.222 31.19 15.13 0.00 3.35
231 232 4.111053 GAGGCGTTCCCTTCCCCC 62.111 72.222 0.00 0.00 46.60 5.40
232 233 4.111053 GGAGGCGTTCCCTTCCCC 62.111 72.222 0.00 0.00 46.60 4.81
233 234 4.468689 CGGAGGCGTTCCCTTCCC 62.469 72.222 3.02 0.00 46.60 3.97
234 235 3.372554 CTCGGAGGCGTTCCCTTCC 62.373 68.421 0.00 0.00 46.60 3.46
235 236 2.184579 CTCGGAGGCGTTCCCTTC 59.815 66.667 0.00 0.00 46.60 3.46
236 237 2.603776 ACTCGGAGGCGTTCCCTT 60.604 61.111 10.23 0.00 46.60 3.95
238 239 4.144703 GGACTCGGAGGCGTTCCC 62.145 72.222 10.23 0.00 43.63 3.97
239 240 4.493747 CGGACTCGGAGGCGTTCC 62.494 72.222 10.23 6.16 43.04 3.62
240 241 3.437795 TCGGACTCGGAGGCGTTC 61.438 66.667 10.23 0.00 36.95 3.95
241 242 3.745803 GTCGGACTCGGAGGCGTT 61.746 66.667 10.23 0.00 36.95 4.84
245 246 2.912987 ATCTGGGTCGGACTCGGAGG 62.913 65.000 22.95 4.98 37.41 4.30
246 247 1.448922 GATCTGGGTCGGACTCGGAG 61.449 65.000 22.95 7.30 37.41 4.63
247 248 1.453379 GATCTGGGTCGGACTCGGA 60.453 63.158 21.17 21.17 38.55 4.55
248 249 2.491022 GGATCTGGGTCGGACTCGG 61.491 68.421 10.71 10.71 36.95 4.63
249 250 1.109920 ATGGATCTGGGTCGGACTCG 61.110 60.000 8.23 0.92 37.82 4.18
250 251 1.069358 GAATGGATCTGGGTCGGACTC 59.931 57.143 8.23 4.25 0.00 3.36
251 252 1.123928 GAATGGATCTGGGTCGGACT 58.876 55.000 8.23 0.00 0.00 3.85
252 253 0.249489 CGAATGGATCTGGGTCGGAC 60.249 60.000 0.00 0.00 0.00 4.79
253 254 0.396556 TCGAATGGATCTGGGTCGGA 60.397 55.000 0.00 0.00 32.68 4.55
254 255 0.464036 TTCGAATGGATCTGGGTCGG 59.536 55.000 0.00 0.00 32.68 4.79
255 256 2.408050 GATTCGAATGGATCTGGGTCG 58.592 52.381 16.96 0.00 0.00 4.79
256 257 2.035961 TCGATTCGAATGGATCTGGGTC 59.964 50.000 16.96 0.00 31.06 4.46
257 258 2.036475 CTCGATTCGAATGGATCTGGGT 59.964 50.000 21.07 0.00 34.74 4.51
258 259 2.681706 CTCGATTCGAATGGATCTGGG 58.318 52.381 21.07 7.48 34.74 4.45
259 260 2.064762 GCTCGATTCGAATGGATCTGG 58.935 52.381 21.07 11.82 34.74 3.86
260 261 1.718178 CGCTCGATTCGAATGGATCTG 59.282 52.381 21.07 12.13 34.74 2.90
261 262 1.932604 GCGCTCGATTCGAATGGATCT 60.933 52.381 21.07 0.00 34.74 2.75
262 263 0.436531 GCGCTCGATTCGAATGGATC 59.563 55.000 21.07 16.50 34.74 3.36
263 264 0.946221 GGCGCTCGATTCGAATGGAT 60.946 55.000 21.07 0.00 34.74 3.41
264 265 1.591594 GGCGCTCGATTCGAATGGA 60.592 57.895 16.96 18.68 34.74 3.41
265 266 2.598632 GGGCGCTCGATTCGAATGG 61.599 63.158 16.96 14.99 34.74 3.16
266 267 1.428370 TTGGGCGCTCGATTCGAATG 61.428 55.000 16.96 8.23 34.74 2.67
267 268 0.742990 TTTGGGCGCTCGATTCGAAT 60.743 50.000 11.20 11.20 34.74 3.34
268 269 0.951525 TTTTGGGCGCTCGATTCGAA 60.952 50.000 7.64 0.00 34.74 3.71
269 270 1.374885 TTTTGGGCGCTCGATTCGA 60.375 52.632 7.64 8.70 0.00 3.71
270 271 1.226018 GTTTTGGGCGCTCGATTCG 60.226 57.895 7.64 0.00 0.00 3.34
271 272 1.136774 GGTTTTGGGCGCTCGATTC 59.863 57.895 7.64 0.00 0.00 2.52
272 273 1.303317 AGGTTTTGGGCGCTCGATT 60.303 52.632 7.64 0.00 0.00 3.34
273 274 2.040544 CAGGTTTTGGGCGCTCGAT 61.041 57.895 7.64 0.00 0.00 3.59
274 275 2.668212 CAGGTTTTGGGCGCTCGA 60.668 61.111 7.64 0.00 0.00 4.04
275 276 2.551912 AACAGGTTTTGGGCGCTCG 61.552 57.895 7.64 0.00 0.00 5.03
276 277 1.007387 CAACAGGTTTTGGGCGCTC 60.007 57.895 7.64 2.47 0.00 5.03
277 278 2.498056 CCAACAGGTTTTGGGCGCT 61.498 57.895 7.64 0.00 42.23 5.92
278 279 2.028925 CCAACAGGTTTTGGGCGC 59.971 61.111 0.00 0.00 42.23 6.53
279 280 2.028925 GCCAACAGGTTTTGGGCG 59.971 61.111 4.13 0.00 45.55 6.13
280 281 1.227527 GTGCCAACAGGTTTTGGGC 60.228 57.895 4.13 5.35 45.55 5.36
281 282 1.067250 CGTGCCAACAGGTTTTGGG 59.933 57.895 4.13 0.00 45.55 4.12
283 284 1.067250 CCCGTGCCAACAGGTTTTG 59.933 57.895 0.00 0.00 0.00 2.44
284 285 0.684805 TTCCCGTGCCAACAGGTTTT 60.685 50.000 0.00 0.00 0.00 2.43
285 286 1.076632 TTCCCGTGCCAACAGGTTT 60.077 52.632 0.00 0.00 0.00 3.27
286 287 1.528309 CTTCCCGTGCCAACAGGTT 60.528 57.895 0.00 0.00 0.00 3.50
287 288 2.113139 CTTCCCGTGCCAACAGGT 59.887 61.111 0.00 0.00 0.00 4.00
288 289 2.672996 CCTTCCCGTGCCAACAGG 60.673 66.667 0.00 0.00 0.00 4.00
289 290 1.672356 CTCCTTCCCGTGCCAACAG 60.672 63.158 0.00 0.00 0.00 3.16
290 291 2.429930 CTCCTTCCCGTGCCAACA 59.570 61.111 0.00 0.00 0.00 3.33
291 292 3.056328 GCTCCTTCCCGTGCCAAC 61.056 66.667 0.00 0.00 0.00 3.77
292 293 4.697756 CGCTCCTTCCCGTGCCAA 62.698 66.667 0.00 0.00 0.00 4.52
294 295 4.821589 CTCGCTCCTTCCCGTGCC 62.822 72.222 0.00 0.00 0.00 5.01
295 296 4.821589 CCTCGCTCCTTCCCGTGC 62.822 72.222 0.00 0.00 0.00 5.34
296 297 3.068691 TCCTCGCTCCTTCCCGTG 61.069 66.667 0.00 0.00 0.00 4.94
297 298 2.756283 CTCCTCGCTCCTTCCCGT 60.756 66.667 0.00 0.00 0.00 5.28
298 299 3.532155 CCTCCTCGCTCCTTCCCG 61.532 72.222 0.00 0.00 0.00 5.14
299 300 2.042843 TCCTCCTCGCTCCTTCCC 60.043 66.667 0.00 0.00 0.00 3.97
300 301 2.776913 CGTCCTCCTCGCTCCTTCC 61.777 68.421 0.00 0.00 0.00 3.46
301 302 0.747283 TACGTCCTCCTCGCTCCTTC 60.747 60.000 0.00 0.00 0.00 3.46
302 303 0.748729 CTACGTCCTCCTCGCTCCTT 60.749 60.000 0.00 0.00 0.00 3.36
303 304 1.153127 CTACGTCCTCCTCGCTCCT 60.153 63.158 0.00 0.00 0.00 3.69
304 305 2.836793 GCTACGTCCTCCTCGCTCC 61.837 68.421 0.00 0.00 0.00 4.70
305 306 2.716864 GCTACGTCCTCCTCGCTC 59.283 66.667 0.00 0.00 0.00 5.03
306 307 3.203412 CGCTACGTCCTCCTCGCT 61.203 66.667 0.00 0.00 0.00 4.93
307 308 3.170810 CTCGCTACGTCCTCCTCGC 62.171 68.421 0.00 0.00 0.00 5.03
308 309 2.535788 CCTCGCTACGTCCTCCTCG 61.536 68.421 0.00 0.00 0.00 4.63
309 310 2.836793 GCCTCGCTACGTCCTCCTC 61.837 68.421 0.00 0.00 0.00 3.71
310 311 2.829458 GCCTCGCTACGTCCTCCT 60.829 66.667 0.00 0.00 0.00 3.69
311 312 4.253257 CGCCTCGCTACGTCCTCC 62.253 72.222 0.00 0.00 0.00 4.30
312 313 3.170810 CTCGCCTCGCTACGTCCTC 62.171 68.421 0.00 0.00 0.00 3.71
313 314 3.203412 CTCGCCTCGCTACGTCCT 61.203 66.667 0.00 0.00 0.00 3.85
314 315 4.253257 CCTCGCCTCGCTACGTCC 62.253 72.222 0.00 0.00 0.00 4.79
315 316 4.908877 GCCTCGCCTCGCTACGTC 62.909 72.222 0.00 0.00 0.00 4.34
326 327 4.785453 CTTCCCCTGTGGCCTCGC 62.785 72.222 3.32 0.00 0.00 5.03
327 328 3.003173 TCTTCCCCTGTGGCCTCG 61.003 66.667 3.32 0.00 0.00 4.63
328 329 2.674220 CCTCTTCCCCTGTGGCCTC 61.674 68.421 3.32 0.00 0.00 4.70
329 330 2.612115 CCTCTTCCCCTGTGGCCT 60.612 66.667 3.32 0.00 0.00 5.19
330 331 3.732849 CCCTCTTCCCCTGTGGCC 61.733 72.222 0.00 0.00 0.00 5.36
331 332 3.732849 CCCCTCTTCCCCTGTGGC 61.733 72.222 0.00 0.00 0.00 5.01
332 333 3.017581 CCCCCTCTTCCCCTGTGG 61.018 72.222 0.00 0.00 0.00 4.17
333 334 1.541368 TTCCCCCTCTTCCCCTGTG 60.541 63.158 0.00 0.00 0.00 3.66
334 335 1.229984 CTTCCCCCTCTTCCCCTGT 60.230 63.158 0.00 0.00 0.00 4.00
335 336 2.684499 GCTTCCCCCTCTTCCCCTG 61.684 68.421 0.00 0.00 0.00 4.45
336 337 2.286502 GCTTCCCCCTCTTCCCCT 60.287 66.667 0.00 0.00 0.00 4.79
337 338 3.798511 CGCTTCCCCCTCTTCCCC 61.799 72.222 0.00 0.00 0.00 4.81
338 339 3.798511 CCGCTTCCCCCTCTTCCC 61.799 72.222 0.00 0.00 0.00 3.97
339 340 3.798511 CCCGCTTCCCCCTCTTCC 61.799 72.222 0.00 0.00 0.00 3.46
340 341 2.687566 TCCCGCTTCCCCCTCTTC 60.688 66.667 0.00 0.00 0.00 2.87
341 342 3.009714 GTCCCGCTTCCCCCTCTT 61.010 66.667 0.00 0.00 0.00 2.85
365 366 3.083997 CTCCTGGTTCCTCCCCGG 61.084 72.222 0.00 0.00 34.77 5.73
366 367 3.083997 CCTCCTGGTTCCTCCCCG 61.084 72.222 0.00 0.00 34.77 5.73
367 368 1.690985 CTCCTCCTGGTTCCTCCCC 60.691 68.421 0.00 0.00 34.77 4.81
368 369 0.978667 GTCTCCTCCTGGTTCCTCCC 60.979 65.000 0.00 0.00 34.77 4.30
369 370 0.978667 GGTCTCCTCCTGGTTCCTCC 60.979 65.000 0.00 0.00 34.23 4.30
370 371 0.252284 TGGTCTCCTCCTGGTTCCTC 60.252 60.000 0.00 0.00 34.23 3.71
371 372 0.545548 GTGGTCTCCTCCTGGTTCCT 60.546 60.000 0.00 0.00 34.23 3.36
372 373 1.889530 CGTGGTCTCCTCCTGGTTCC 61.890 65.000 0.00 0.00 34.23 3.62
373 374 1.592223 CGTGGTCTCCTCCTGGTTC 59.408 63.158 0.00 0.00 34.23 3.62
374 375 1.913762 CCGTGGTCTCCTCCTGGTT 60.914 63.158 0.00 0.00 34.23 3.67
375 376 2.283966 CCGTGGTCTCCTCCTGGT 60.284 66.667 0.00 0.00 34.23 4.00
376 377 3.077556 CCCGTGGTCTCCTCCTGG 61.078 72.222 0.00 0.00 0.00 4.45
377 378 1.192146 TTTCCCGTGGTCTCCTCCTG 61.192 60.000 0.00 0.00 0.00 3.86
378 379 0.905337 CTTTCCCGTGGTCTCCTCCT 60.905 60.000 0.00 0.00 0.00 3.69
379 380 0.903454 TCTTTCCCGTGGTCTCCTCC 60.903 60.000 0.00 0.00 0.00 4.30
380 381 0.533032 CTCTTTCCCGTGGTCTCCTC 59.467 60.000 0.00 0.00 0.00 3.71
381 382 0.114560 TCTCTTTCCCGTGGTCTCCT 59.885 55.000 0.00 0.00 0.00 3.69
382 383 0.974383 TTCTCTTTCCCGTGGTCTCC 59.026 55.000 0.00 0.00 0.00 3.71
383 384 1.066787 CCTTCTCTTTCCCGTGGTCTC 60.067 57.143 0.00 0.00 0.00 3.36
384 385 0.977395 CCTTCTCTTTCCCGTGGTCT 59.023 55.000 0.00 0.00 0.00 3.85
385 386 0.036294 CCCTTCTCTTTCCCGTGGTC 60.036 60.000 0.00 0.00 0.00 4.02
386 387 1.489560 CCCCTTCTCTTTCCCGTGGT 61.490 60.000 0.00 0.00 0.00 4.16
387 388 1.299976 CCCCTTCTCTTTCCCGTGG 59.700 63.158 0.00 0.00 0.00 4.94
388 389 1.198759 TCCCCCTTCTCTTTCCCGTG 61.199 60.000 0.00 0.00 0.00 4.94
389 390 0.475048 TTCCCCCTTCTCTTTCCCGT 60.475 55.000 0.00 0.00 0.00 5.28
390 391 0.253327 CTTCCCCCTTCTCTTTCCCG 59.747 60.000 0.00 0.00 0.00 5.14
391 392 1.670059 TCTTCCCCCTTCTCTTTCCC 58.330 55.000 0.00 0.00 0.00 3.97
392 393 2.619332 GCTTCTTCCCCCTTCTCTTTCC 60.619 54.545 0.00 0.00 0.00 3.13
393 394 2.619332 GGCTTCTTCCCCCTTCTCTTTC 60.619 54.545 0.00 0.00 0.00 2.62
394 395 1.356059 GGCTTCTTCCCCCTTCTCTTT 59.644 52.381 0.00 0.00 0.00 2.52
395 396 0.995803 GGCTTCTTCCCCCTTCTCTT 59.004 55.000 0.00 0.00 0.00 2.85
396 397 1.268283 CGGCTTCTTCCCCCTTCTCT 61.268 60.000 0.00 0.00 0.00 3.10
397 398 1.222113 CGGCTTCTTCCCCCTTCTC 59.778 63.158 0.00 0.00 0.00 2.87
398 399 2.972819 GCGGCTTCTTCCCCCTTCT 61.973 63.158 0.00 0.00 0.00 2.85
399 400 2.438614 GCGGCTTCTTCCCCCTTC 60.439 66.667 0.00 0.00 0.00 3.46
400 401 3.256960 TGCGGCTTCTTCCCCCTT 61.257 61.111 0.00 0.00 0.00 3.95
401 402 4.035102 GTGCGGCTTCTTCCCCCT 62.035 66.667 0.00 0.00 0.00 4.79
403 404 4.388499 TCGTGCGGCTTCTTCCCC 62.388 66.667 0.00 0.00 0.00 4.81
404 405 2.815647 CTCGTGCGGCTTCTTCCC 60.816 66.667 0.00 0.00 0.00 3.97
405 406 2.815647 CCTCGTGCGGCTTCTTCC 60.816 66.667 0.00 0.00 0.00 3.46
406 407 3.491652 GCCTCGTGCGGCTTCTTC 61.492 66.667 0.00 0.00 46.63 2.87
456 457 4.373116 TCTCCCTTGTGGCGACGC 62.373 66.667 12.43 12.43 42.66 5.19
457 458 2.125912 CTCTCCCTTGTGGCGACG 60.126 66.667 0.00 0.00 0.00 5.12
458 459 1.216710 CTCTCTCCCTTGTGGCGAC 59.783 63.158 0.00 0.00 0.00 5.19
459 460 1.984570 CCTCTCTCCCTTGTGGCGA 60.985 63.158 0.00 0.00 0.00 5.54
460 461 2.581354 CCTCTCTCCCTTGTGGCG 59.419 66.667 0.00 0.00 0.00 5.69
461 462 2.674220 CCCCTCTCTCCCTTGTGGC 61.674 68.421 0.00 0.00 0.00 5.01
462 463 0.547712 TTCCCCTCTCTCCCTTGTGG 60.548 60.000 0.00 0.00 0.00 4.17
463 464 0.908198 CTTCCCCTCTCTCCCTTGTG 59.092 60.000 0.00 0.00 0.00 3.33
464 465 0.252927 CCTTCCCCTCTCTCCCTTGT 60.253 60.000 0.00 0.00 0.00 3.16
465 466 0.043334 TCCTTCCCCTCTCTCCCTTG 59.957 60.000 0.00 0.00 0.00 3.61
466 467 0.341609 CTCCTTCCCCTCTCTCCCTT 59.658 60.000 0.00 0.00 0.00 3.95
467 468 0.556380 TCTCCTTCCCCTCTCTCCCT 60.556 60.000 0.00 0.00 0.00 4.20
468 469 0.397957 GTCTCCTTCCCCTCTCTCCC 60.398 65.000 0.00 0.00 0.00 4.30
469 470 0.336737 TGTCTCCTTCCCCTCTCTCC 59.663 60.000 0.00 0.00 0.00 3.71
470 471 2.091333 AGATGTCTCCTTCCCCTCTCTC 60.091 54.545 0.00 0.00 0.00 3.20
471 472 1.936631 AGATGTCTCCTTCCCCTCTCT 59.063 52.381 0.00 0.00 0.00 3.10
472 473 2.316108 GAGATGTCTCCTTCCCCTCTC 58.684 57.143 0.00 0.00 37.02 3.20
473 474 2.470057 GAGATGTCTCCTTCCCCTCT 57.530 55.000 0.00 0.00 37.02 3.69
483 484 5.590530 ACTCAACACTATGGAGATGTCTC 57.409 43.478 1.33 1.33 42.14 3.36
484 485 6.836007 TCATACTCAACACTATGGAGATGTCT 59.164 38.462 0.00 0.00 33.00 3.41
485 486 6.920758 GTCATACTCAACACTATGGAGATGTC 59.079 42.308 0.00 0.00 33.00 3.06
486 487 6.460261 CGTCATACTCAACACTATGGAGATGT 60.460 42.308 0.00 0.00 33.00 3.06
487 488 5.917447 CGTCATACTCAACACTATGGAGATG 59.083 44.000 0.00 0.00 33.00 2.90
488 489 5.508153 GCGTCATACTCAACACTATGGAGAT 60.508 44.000 0.00 0.00 33.00 2.75
489 490 4.202020 GCGTCATACTCAACACTATGGAGA 60.202 45.833 0.00 0.00 33.00 3.71
490 491 4.045104 GCGTCATACTCAACACTATGGAG 58.955 47.826 0.00 0.00 34.85 3.86
491 492 3.488553 CGCGTCATACTCAACACTATGGA 60.489 47.826 0.00 0.00 0.00 3.41
492 493 2.789339 CGCGTCATACTCAACACTATGG 59.211 50.000 0.00 0.00 0.00 2.74
493 494 3.691498 TCGCGTCATACTCAACACTATG 58.309 45.455 5.77 0.00 0.00 2.23
494 495 3.792459 GCTCGCGTCATACTCAACACTAT 60.792 47.826 5.77 0.00 0.00 2.12
495 496 2.477357 GCTCGCGTCATACTCAACACTA 60.477 50.000 5.77 0.00 0.00 2.74
496 497 1.732732 GCTCGCGTCATACTCAACACT 60.733 52.381 5.77 0.00 0.00 3.55
497 498 0.640768 GCTCGCGTCATACTCAACAC 59.359 55.000 5.77 0.00 0.00 3.32
498 499 0.526211 AGCTCGCGTCATACTCAACA 59.474 50.000 5.77 0.00 0.00 3.33
499 500 1.192793 GAGCTCGCGTCATACTCAAC 58.807 55.000 5.77 0.00 0.00 3.18
500 501 0.100682 GGAGCTCGCGTCATACTCAA 59.899 55.000 5.77 0.00 0.00 3.02
501 502 1.725557 GGGAGCTCGCGTCATACTCA 61.726 60.000 15.66 0.00 0.00 3.41
502 503 1.008309 GGGAGCTCGCGTCATACTC 60.008 63.158 15.66 7.01 0.00 2.59
503 504 2.491022 GGGGAGCTCGCGTCATACT 61.491 63.158 22.90 0.00 0.00 2.12
504 505 2.027751 GGGGAGCTCGCGTCATAC 59.972 66.667 22.90 5.76 0.00 2.39
505 506 2.441348 TGGGGAGCTCGCGTCATA 60.441 61.111 22.90 5.61 0.00 2.15
506 507 4.148825 GTGGGGAGCTCGCGTCAT 62.149 66.667 22.90 0.00 0.00 3.06
512 513 2.303549 CTAGCAAGGTGGGGAGCTCG 62.304 65.000 7.83 0.00 0.00 5.03
513 514 1.268283 ACTAGCAAGGTGGGGAGCTC 61.268 60.000 4.71 4.71 0.00 4.09
514 515 0.842467 AACTAGCAAGGTGGGGAGCT 60.842 55.000 0.00 0.00 0.00 4.09
515 516 0.393132 GAACTAGCAAGGTGGGGAGC 60.393 60.000 0.00 0.00 0.00 4.70
516 517 0.984230 TGAACTAGCAAGGTGGGGAG 59.016 55.000 0.00 0.00 0.00 4.30
517 518 1.281867 CATGAACTAGCAAGGTGGGGA 59.718 52.381 0.00 0.00 0.00 4.81
518 519 1.281867 TCATGAACTAGCAAGGTGGGG 59.718 52.381 0.00 0.00 0.00 4.96
519 520 2.787473 TCATGAACTAGCAAGGTGGG 57.213 50.000 0.00 0.00 0.00 4.61
520 521 5.882557 AGTAATTCATGAACTAGCAAGGTGG 59.117 40.000 11.07 0.00 0.00 4.61
521 522 6.237942 CGAGTAATTCATGAACTAGCAAGGTG 60.238 42.308 11.07 0.00 0.00 4.00
522 523 5.812642 CGAGTAATTCATGAACTAGCAAGGT 59.187 40.000 11.07 0.00 0.00 3.50
523 524 6.042777 TCGAGTAATTCATGAACTAGCAAGG 58.957 40.000 11.07 0.00 0.00 3.61
524 525 7.706281 ATCGAGTAATTCATGAACTAGCAAG 57.294 36.000 11.07 0.53 0.00 4.01
540 541 7.901377 GCTTAAATGAAAAGCGTAATCGAGTAA 59.099 33.333 0.00 0.00 39.92 2.24
543 544 6.703217 GCTTAAATGAAAAGCGTAATCGAG 57.297 37.500 0.00 0.00 39.92 4.04
558 559 8.677300 TCTTCAAGTTTATGCCTAGCTTAAATG 58.323 33.333 9.86 6.59 39.24 2.32
560 561 8.630054 TTCTTCAAGTTTATGCCTAGCTTAAA 57.370 30.769 0.00 4.17 36.36 1.52
594 595 9.739276 TCAACACAATATCTCCTTCAAGTTTAT 57.261 29.630 0.00 0.00 0.00 1.40
596 597 8.641498 ATCAACACAATATCTCCTTCAAGTTT 57.359 30.769 0.00 0.00 0.00 2.66
597 598 8.641498 AATCAACACAATATCTCCTTCAAGTT 57.359 30.769 0.00 0.00 0.00 2.66
599 600 9.918630 AAAAATCAACACAATATCTCCTTCAAG 57.081 29.630 0.00 0.00 0.00 3.02
611 612 8.594687 CGAAGTCAAAAGAAAAATCAACACAAT 58.405 29.630 0.00 0.00 0.00 2.71
612 613 7.596995 ACGAAGTCAAAAGAAAAATCAACACAA 59.403 29.630 0.00 0.00 29.74 3.33
614 615 7.272515 TCACGAAGTCAAAAGAAAAATCAACAC 59.727 33.333 0.00 0.00 41.61 3.32
615 616 7.272515 GTCACGAAGTCAAAAGAAAAATCAACA 59.727 33.333 0.00 0.00 41.61 3.33
616 617 7.272515 TGTCACGAAGTCAAAAGAAAAATCAAC 59.727 33.333 0.00 0.00 41.61 3.18
617 618 7.309177 TGTCACGAAGTCAAAAGAAAAATCAA 58.691 30.769 0.00 0.00 41.61 2.57
618 619 6.847400 TGTCACGAAGTCAAAAGAAAAATCA 58.153 32.000 0.00 0.00 41.61 2.57
619 620 7.600907 GTTGTCACGAAGTCAAAAGAAAAATC 58.399 34.615 0.00 0.00 41.61 2.17
620 621 7.506296 GTTGTCACGAAGTCAAAAGAAAAAT 57.494 32.000 0.00 0.00 41.61 1.82
621 622 6.921332 GTTGTCACGAAGTCAAAAGAAAAA 57.079 33.333 0.00 0.00 41.61 1.94
637 638 4.307908 GTGCCCGTGCGTTGTCAC 62.308 66.667 0.00 0.00 41.78 3.67
639 640 3.869473 TAGGTGCCCGTGCGTTGTC 62.869 63.158 0.00 0.00 41.78 3.18
668 669 6.693315 TTTCTTCACAGGGACACTTTTTAG 57.307 37.500 0.00 0.00 0.00 1.85
684 685 2.813172 TCATCTGCGTTGCATTTCTTCA 59.187 40.909 0.00 0.00 38.13 3.02
735 736 2.898738 CAGCTCGCCATCTGGACT 59.101 61.111 0.00 0.00 37.39 3.85
1257 1266 0.039180 TCCTTACCGAGTCCAGCAGA 59.961 55.000 0.00 0.00 0.00 4.26
1615 1624 3.451894 CAATGGTTGCTCCCCGGC 61.452 66.667 0.00 0.00 34.77 6.13
1896 1913 9.277783 GCTTGTACAGTAAGGATGATTATCAAT 57.722 33.333 0.00 0.00 34.90 2.57
1962 1980 7.004086 TCAACTTCACCATGAAATTAGGAACT 58.996 34.615 0.00 0.00 38.11 3.01
2006 2024 2.962859 ACCAAAGGCAAACTGGAAGAT 58.037 42.857 0.87 0.00 37.43 2.40
2143 3667 8.048514 GGTACCCCTTATTTTATCACACTAACA 58.951 37.037 0.00 0.00 0.00 2.41
2446 3970 4.096382 GTGTATCAGGAATGGCGAAAATGT 59.904 41.667 0.00 0.00 0.00 2.71
2528 4052 4.738998 CCTTGGCCGCCCATGTCA 62.739 66.667 7.03 0.00 41.78 3.58
2623 4147 4.587584 AGCGGAGTACTATAAGCCTTTC 57.412 45.455 0.00 0.00 0.00 2.62
2642 4166 1.002544 CTAATCCCCGGATCCTCAAGC 59.997 57.143 10.75 0.00 33.08 4.01
2753 4277 2.159240 GCAAGCTATAAGTGCCCAAACC 60.159 50.000 0.00 0.00 31.94 3.27
2996 4520 0.039256 CTGCAATCCAACCACCAACG 60.039 55.000 0.00 0.00 0.00 4.10
3107 4646 7.466804 AGTTCAAAAACTGGATCCTGGTTATA 58.533 34.615 20.99 8.00 44.13 0.98
3166 4705 0.973632 AACAGGTGGACGTGCATAGA 59.026 50.000 14.45 0.00 35.33 1.98
3359 4898 6.326064 TCCCTGACATTTGGAAAAAGATTCAA 59.674 34.615 0.00 0.00 0.00 2.69
3417 4956 5.098893 CGAGGACCGATATCTTGATGATTC 58.901 45.833 0.34 0.00 41.76 2.52
3458 4997 7.878127 AGTGCACCGAAATATTATGCTATAGTT 59.122 33.333 14.63 0.00 37.20 2.24
3477 5016 6.366332 CGGAACATCTAAGATTATAGTGCACC 59.634 42.308 14.63 0.00 0.00 5.01
3501 5040 6.359087 GGTAGCATATTCAGTACGACTTTACG 59.641 42.308 0.00 0.00 39.31 3.18
3543 5084 0.035458 AGTACACCCTGCAAGACAGC 59.965 55.000 0.00 0.00 45.78 4.40
3672 5213 6.249050 CGTGCAATTGACAGTGTAATATGTTG 59.751 38.462 10.34 0.00 0.00 3.33
3831 5373 1.610038 TGAGTCGTTAACCAGAAGCGA 59.390 47.619 0.00 0.00 0.00 4.93
3854 5396 5.290386 GCAGTATTTACTACTAGCAGGTGG 58.710 45.833 0.00 0.00 38.68 4.61
3855 5397 5.290386 GGCAGTATTTACTACTAGCAGGTG 58.710 45.833 0.00 0.00 38.68 4.00
3856 5398 4.344390 GGGCAGTATTTACTACTAGCAGGT 59.656 45.833 0.00 0.00 38.68 4.00
3870 5412 1.999346 GTCCACCCAGGGCAGTATT 59.001 57.895 4.91 0.00 43.39 1.89
4014 5556 2.356432 CCTGTCCTCAATTCATGCTCCA 60.356 50.000 0.00 0.00 0.00 3.86
4030 5572 4.864334 CCCCTGCGCATCCCTGTC 62.864 72.222 12.24 0.00 0.00 3.51
4045 5587 0.036306 CATCCCTATACAACCGGCCC 59.964 60.000 0.00 0.00 0.00 5.80
4131 5673 9.371136 CAAAAAGAAAAAGAAAAGAGGCTTACT 57.629 29.630 0.00 0.00 0.00 2.24
4426 5975 5.717078 ACGAGAACATCTACCACTAAACA 57.283 39.130 0.00 0.00 0.00 2.83
4436 5985 7.541091 GTGTTTCATAGTCAACGAGAACATCTA 59.459 37.037 0.00 0.00 0.00 1.98
4455 6030 2.223456 CGAAGCAACCACATGTGTTTCA 60.223 45.455 23.79 0.00 0.00 2.69
4461 6036 1.674359 TTGACGAAGCAACCACATGT 58.326 45.000 0.00 0.00 0.00 3.21
4462 6037 2.772568 TTTGACGAAGCAACCACATG 57.227 45.000 0.00 0.00 0.00 3.21
4463 6038 3.149196 AGATTTGACGAAGCAACCACAT 58.851 40.909 0.00 0.00 0.00 3.21
4464 6039 2.571212 AGATTTGACGAAGCAACCACA 58.429 42.857 0.00 0.00 0.00 4.17
4465 6040 4.742438 TTAGATTTGACGAAGCAACCAC 57.258 40.909 0.00 0.00 0.00 4.16
4466 6041 5.060506 TCTTTAGATTTGACGAAGCAACCA 58.939 37.500 0.00 0.00 0.00 3.67
4467 6042 5.607119 TCTTTAGATTTGACGAAGCAACC 57.393 39.130 0.00 0.00 0.00 3.77
4468 6043 7.739295 TGTATCTTTAGATTTGACGAAGCAAC 58.261 34.615 0.00 0.00 36.05 4.17
4469 6044 7.899178 TGTATCTTTAGATTTGACGAAGCAA 57.101 32.000 0.00 0.00 36.05 3.91
4470 6045 7.549134 ACATGTATCTTTAGATTTGACGAAGCA 59.451 33.333 0.00 0.00 36.05 3.91
4471 6046 7.848051 CACATGTATCTTTAGATTTGACGAAGC 59.152 37.037 0.00 0.00 36.05 3.86
4472 6047 8.331022 CCACATGTATCTTTAGATTTGACGAAG 58.669 37.037 0.00 0.00 36.05 3.79
4473 6048 7.822334 ACCACATGTATCTTTAGATTTGACGAA 59.178 33.333 0.00 0.00 36.05 3.85
4474 6049 7.277760 CACCACATGTATCTTTAGATTTGACGA 59.722 37.037 0.00 0.00 36.05 4.20
4475 6050 7.401860 CACCACATGTATCTTTAGATTTGACG 58.598 38.462 0.00 0.00 36.05 4.35
4476 6051 7.679638 GCCACCACATGTATCTTTAGATTTGAC 60.680 40.741 0.00 0.00 36.05 3.18
4477 6052 6.318648 GCCACCACATGTATCTTTAGATTTGA 59.681 38.462 0.00 0.00 36.05 2.69
4478 6053 6.319658 AGCCACCACATGTATCTTTAGATTTG 59.680 38.462 0.00 0.00 36.05 2.32
4479 6054 6.426587 AGCCACCACATGTATCTTTAGATTT 58.573 36.000 0.00 0.00 36.05 2.17
4480 6055 6.006275 AGCCACCACATGTATCTTTAGATT 57.994 37.500 0.00 0.00 36.05 2.40
4481 6056 5.636903 AGCCACCACATGTATCTTTAGAT 57.363 39.130 0.00 0.00 38.51 1.98
4482 6057 5.428253 GAAGCCACCACATGTATCTTTAGA 58.572 41.667 0.00 0.00 0.00 2.10
4483 6058 4.271049 CGAAGCCACCACATGTATCTTTAG 59.729 45.833 0.00 0.00 0.00 1.85
4484 6059 4.188462 CGAAGCCACCACATGTATCTTTA 58.812 43.478 0.00 0.00 0.00 1.85
4485 6060 3.009723 CGAAGCCACCACATGTATCTTT 58.990 45.455 0.00 0.00 0.00 2.52
4486 6061 2.027192 ACGAAGCCACCACATGTATCTT 60.027 45.455 0.00 0.00 0.00 2.40
4487 6062 1.555075 ACGAAGCCACCACATGTATCT 59.445 47.619 0.00 0.00 0.00 1.98
4488 6063 1.933853 GACGAAGCCACCACATGTATC 59.066 52.381 0.00 0.00 0.00 2.24
4489 6064 1.277842 TGACGAAGCCACCACATGTAT 59.722 47.619 0.00 0.00 0.00 2.29
4490 6065 0.682292 TGACGAAGCCACCACATGTA 59.318 50.000 0.00 0.00 0.00 2.29
4491 6066 0.179032 TTGACGAAGCCACCACATGT 60.179 50.000 0.00 0.00 0.00 3.21
4513 6223 4.142359 ACCGAGTGATCACAACATCTCTAC 60.142 45.833 27.02 0.00 28.80 2.59
4516 6226 3.238108 ACCGAGTGATCACAACATCTC 57.762 47.619 27.02 13.60 0.00 2.75
4528 6238 2.092323 CACCTCTGTGATACCGAGTGA 58.908 52.381 0.00 0.00 45.76 3.41
4530 6240 0.818296 GCACCTCTGTGATACCGAGT 59.182 55.000 0.00 0.00 45.76 4.18
4534 6244 4.561734 GCCTATAAGCACCTCTGTGATACC 60.562 50.000 0.00 0.00 45.76 2.73
4542 6252 2.240279 CCTACGCCTATAAGCACCTCT 58.760 52.381 0.00 0.00 0.00 3.69
4568 6278 1.070914 TCACCCTTATGAACGCACACA 59.929 47.619 0.00 0.00 0.00 3.72
4572 6282 1.621317 TCTGTCACCCTTATGAACGCA 59.379 47.619 0.00 0.00 0.00 5.24
4574 6284 3.000727 GGTTCTGTCACCCTTATGAACG 58.999 50.000 0.00 0.00 35.88 3.95
4582 6294 2.516888 CCACCGGTTCTGTCACCCT 61.517 63.158 2.97 0.00 32.48 4.34
4701 6413 1.857638 TTGTGATGGCGATGGGGGAA 61.858 55.000 0.00 0.00 0.00 3.97
4740 6452 2.767445 CCGCCACCTACGTCGATCA 61.767 63.158 0.00 0.00 0.00 2.92
4776 6488 1.078214 CAGCCCTTGGATCGAGCAA 60.078 57.895 1.84 0.00 0.00 3.91
4777 6489 2.586245 CAGCCCTTGGATCGAGCA 59.414 61.111 1.84 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.