Multiple sequence alignment - TraesCS3B01G219600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G219600 chr3B 100.000 3855 0 0 1 3855 264007265 264011119 0.000000e+00 7119.0
1 TraesCS3B01G219600 chr3B 95.785 688 27 2 3169 3855 256360413 256361099 0.000000e+00 1109.0
2 TraesCS3B01G219600 chr3B 82.578 287 40 7 3 288 197467 197190 1.070000e-60 244.0
3 TraesCS3B01G219600 chr3B 82.937 252 31 9 1 249 403113425 403113183 2.330000e-52 217.0
4 TraesCS3B01G219600 chr3B 91.837 49 3 1 1312 1359 627212394 627212442 2.490000e-07 67.6
5 TraesCS3B01G219600 chr3D 95.620 1370 26 7 1689 3030 185236084 185237447 0.000000e+00 2167.0
6 TraesCS3B01G219600 chr3D 90.202 1041 35 28 289 1311 185234614 185235605 0.000000e+00 1295.0
7 TraesCS3B01G219600 chr3D 99.673 306 1 0 1406 1711 185235769 185236074 9.350000e-156 560.0
8 TraesCS3B01G219600 chr3D 92.683 82 6 0 3061 3142 185251681 185251762 6.770000e-23 119.0
9 TraesCS3B01G219600 chr3D 91.667 48 3 1 1312 1358 70929805 70929852 8.940000e-07 65.8
10 TraesCS3B01G219600 chr3A 95.683 973 30 3 2067 3030 244352757 244353726 0.000000e+00 1554.0
11 TraesCS3B01G219600 chr3A 88.970 961 54 20 368 1311 244350415 244351340 0.000000e+00 1140.0
12 TraesCS3B01G219600 chr3A 96.185 367 13 1 1689 2055 244351721 244352086 1.980000e-167 599.0
13 TraesCS3B01G219600 chr3A 96.438 365 8 4 1351 1711 244351342 244351705 7.130000e-167 597.0
14 TraesCS3B01G219600 chr3A 90.244 287 20 4 2 288 482474857 482475135 6.080000e-98 368.0
15 TraesCS3B01G219600 chr3A 91.753 97 8 0 3046 3142 244354084 244354180 6.720000e-28 135.0
16 TraesCS3B01G219600 chr3A 93.333 90 6 0 289 378 244307499 244307588 2.420000e-27 134.0
17 TraesCS3B01G219600 chr2B 96.557 697 24 0 3159 3855 235579799 235579103 0.000000e+00 1155.0
18 TraesCS3B01G219600 chr2B 95.182 685 33 0 3171 3855 232451682 232452366 0.000000e+00 1083.0
19 TraesCS3B01G219600 chr6B 97.293 665 16 2 3191 3855 674952325 674951663 0.000000e+00 1127.0
20 TraesCS3B01G219600 chr6B 95.827 695 29 0 3161 3855 620698108 620698802 0.000000e+00 1123.0
21 TraesCS3B01G219600 chr6B 95.719 654 24 2 3202 3855 663170665 663170016 0.000000e+00 1050.0
22 TraesCS3B01G219600 chr7B 96.274 671 25 0 3185 3855 697163966 697164636 0.000000e+00 1101.0
23 TraesCS3B01G219600 chr7B 95.315 683 31 1 3174 3855 28973085 28972403 0.000000e+00 1083.0
24 TraesCS3B01G219600 chr7B 94.215 242 6 5 35 276 122697449 122697682 2.830000e-96 363.0
25 TraesCS3B01G219600 chr7B 92.308 52 1 3 1312 1361 40703480 40703430 1.920000e-08 71.3
26 TraesCS3B01G219600 chr4B 95.864 677 26 2 3179 3855 37870591 37869917 0.000000e+00 1094.0
27 TraesCS3B01G219600 chr4B 91.638 287 14 5 1 286 651083470 651083747 4.670000e-104 388.0
28 TraesCS3B01G219600 chr4B 83.660 153 19 6 1894 2043 147330426 147330277 5.190000e-29 139.0
29 TraesCS3B01G219600 chr1B 95.058 688 33 1 3169 3855 629922529 629923216 0.000000e+00 1081.0
30 TraesCS3B01G219600 chr1B 91.837 49 2 2 1312 1358 113565789 113565741 2.490000e-07 67.6
31 TraesCS3B01G219600 chrUn 83.275 287 38 7 3 288 36424654 36424377 4.940000e-64 255.0
32 TraesCS3B01G219600 chr1D 83.162 291 35 10 1 288 62923342 62923063 1.780000e-63 254.0
33 TraesCS3B01G219600 chr4D 83.660 153 19 6 1894 2043 102874219 102874070 5.190000e-29 139.0
34 TraesCS3B01G219600 chr4D 84.071 113 18 0 2298 2410 102872288 102872176 4.070000e-20 110.0
35 TraesCS3B01G219600 chr4A 83.007 153 20 6 1894 2043 472194922 472195071 2.420000e-27 134.0
36 TraesCS3B01G219600 chr4A 84.071 113 18 0 2298 2410 472197187 472197299 4.070000e-20 110.0
37 TraesCS3B01G219600 chr5A 82.857 140 23 1 1917 2055 311676126 311675987 1.450000e-24 124.0
38 TraesCS3B01G219600 chr5D 84.677 124 18 1 1933 2055 241846366 241846243 5.230000e-24 122.0
39 TraesCS3B01G219600 chr5B 84.677 124 18 1 1933 2055 256616250 256616127 5.230000e-24 122.0
40 TraesCS3B01G219600 chr2A 93.617 47 1 2 1309 1353 617666231 617666277 6.910000e-08 69.4
41 TraesCS3B01G219600 chr7D 91.667 48 3 1 1312 1358 431130104 431130151 8.940000e-07 65.8
42 TraesCS3B01G219600 chr7A 91.667 48 3 1 1312 1358 355242199 355242246 8.940000e-07 65.8
43 TraesCS3B01G219600 chr2D 91.667 48 3 1 1312 1358 426844855 426844808 8.940000e-07 65.8
44 TraesCS3B01G219600 chr2D 91.667 48 3 1 1312 1358 452294136 452294089 8.940000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G219600 chr3B 264007265 264011119 3854 False 7119.000000 7119 100.0000 1 3855 1 chr3B.!!$F2 3854
1 TraesCS3B01G219600 chr3B 256360413 256361099 686 False 1109.000000 1109 95.7850 3169 3855 1 chr3B.!!$F1 686
2 TraesCS3B01G219600 chr3D 185234614 185237447 2833 False 1340.666667 2167 95.1650 289 3030 3 chr3D.!!$F3 2741
3 TraesCS3B01G219600 chr3A 244350415 244354180 3765 False 805.000000 1554 93.8058 368 3142 5 chr3A.!!$F3 2774
4 TraesCS3B01G219600 chr2B 235579103 235579799 696 True 1155.000000 1155 96.5570 3159 3855 1 chr2B.!!$R1 696
5 TraesCS3B01G219600 chr2B 232451682 232452366 684 False 1083.000000 1083 95.1820 3171 3855 1 chr2B.!!$F1 684
6 TraesCS3B01G219600 chr6B 674951663 674952325 662 True 1127.000000 1127 97.2930 3191 3855 1 chr6B.!!$R2 664
7 TraesCS3B01G219600 chr6B 620698108 620698802 694 False 1123.000000 1123 95.8270 3161 3855 1 chr6B.!!$F1 694
8 TraesCS3B01G219600 chr6B 663170016 663170665 649 True 1050.000000 1050 95.7190 3202 3855 1 chr6B.!!$R1 653
9 TraesCS3B01G219600 chr7B 697163966 697164636 670 False 1101.000000 1101 96.2740 3185 3855 1 chr7B.!!$F2 670
10 TraesCS3B01G219600 chr7B 28972403 28973085 682 True 1083.000000 1083 95.3150 3174 3855 1 chr7B.!!$R1 681
11 TraesCS3B01G219600 chr4B 37869917 37870591 674 True 1094.000000 1094 95.8640 3179 3855 1 chr4B.!!$R1 676
12 TraesCS3B01G219600 chr1B 629922529 629923216 687 False 1081.000000 1081 95.0580 3169 3855 1 chr1B.!!$F1 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
778 783 0.034767 TCATTGCCTTGGCAGAGAGG 60.035 55.0 14.33 2.45 36.09 3.69 F
1082 1101 0.037882 TGCTGCTCTTCGTCTTCCTG 60.038 55.0 0.00 0.00 0.00 3.86 F
1349 1387 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.0 13.64 0.00 46.06 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2085 2930 0.240945 CCAGTCGTTGGTGGCAAATC 59.759 55.0 0.00 0.00 42.41 2.17 R
2664 3518 0.796312 CTTGACGTGCACACCCATAC 59.204 55.0 18.64 0.21 0.00 2.39 R
3147 4346 0.963355 TTGTAACGCATGGAAGGGGC 60.963 55.0 0.00 0.00 31.93 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.501610 GGGCCGTTGGAGAGCTAG 59.498 66.667 0.00 0.00 0.00 3.42
18 19 2.501610 GGCCGTTGGAGAGCTAGG 59.498 66.667 0.00 0.00 0.00 3.02
19 20 2.501610 GCCGTTGGAGAGCTAGGG 59.498 66.667 0.00 0.00 0.00 3.53
20 21 2.501610 CCGTTGGAGAGCTAGGGC 59.498 66.667 0.00 0.00 39.06 5.19
21 22 2.359169 CCGTTGGAGAGCTAGGGCA 61.359 63.158 0.00 0.00 41.70 5.36
22 23 1.153549 CGTTGGAGAGCTAGGGCAC 60.154 63.158 0.00 0.00 41.70 5.01
23 24 1.888436 CGTTGGAGAGCTAGGGCACA 61.888 60.000 0.00 0.00 41.70 4.57
24 25 0.391793 GTTGGAGAGCTAGGGCACAC 60.392 60.000 0.00 0.00 41.70 3.82
25 26 1.888436 TTGGAGAGCTAGGGCACACG 61.888 60.000 0.00 0.00 41.70 4.49
26 27 2.352032 GGAGAGCTAGGGCACACGT 61.352 63.158 0.00 0.00 41.70 4.49
27 28 1.139947 GAGAGCTAGGGCACACGTC 59.860 63.158 0.00 0.00 41.70 4.34
28 29 2.184579 GAGCTAGGGCACACGTCC 59.815 66.667 0.00 0.00 41.70 4.79
29 30 3.701604 GAGCTAGGGCACACGTCCG 62.702 68.421 0.00 0.00 43.99 4.79
31 32 4.814294 CTAGGGCACACGTCCGCC 62.814 72.222 15.07 15.07 43.99 6.13
49 50 3.818787 GAAGGGCCAGCGCACATG 61.819 66.667 11.47 0.00 42.77 3.21
72 73 4.785453 CCAAGCGGGACCAGGCTC 62.785 72.222 9.47 0.00 38.88 4.70
73 74 4.785453 CAAGCGGGACCAGGCTCC 62.785 72.222 9.47 0.00 38.88 4.70
76 77 4.864334 GCGGGACCAGGCTCCATG 62.864 72.222 9.54 0.00 30.97 3.66
77 78 4.181010 CGGGACCAGGCTCCATGG 62.181 72.222 4.97 4.97 43.87 3.66
78 79 4.512914 GGGACCAGGCTCCATGGC 62.513 72.222 6.96 0.00 41.87 4.40
79 80 4.864334 GGACCAGGCTCCATGGCG 62.864 72.222 6.96 0.71 46.88 5.69
80 81 4.864334 GACCAGGCTCCATGGCGG 62.864 72.222 6.96 3.34 46.88 6.13
86 87 4.783621 GCTCCATGGCGGCACAGA 62.784 66.667 16.34 13.41 33.14 3.41
87 88 2.191375 CTCCATGGCGGCACAGAT 59.809 61.111 16.34 0.00 33.14 2.90
88 89 1.452651 CTCCATGGCGGCACAGATT 60.453 57.895 16.34 0.00 33.14 2.40
89 90 1.721664 CTCCATGGCGGCACAGATTG 61.722 60.000 16.34 8.36 33.14 2.67
90 91 1.750018 CCATGGCGGCACAGATTGA 60.750 57.895 16.34 0.00 0.00 2.57
91 92 1.314534 CCATGGCGGCACAGATTGAA 61.315 55.000 16.34 0.00 0.00 2.69
92 93 0.179156 CATGGCGGCACAGATTGAAC 60.179 55.000 16.34 0.00 0.00 3.18
93 94 0.608856 ATGGCGGCACAGATTGAACA 60.609 50.000 16.34 0.00 0.00 3.18
94 95 0.608856 TGGCGGCACAGATTGAACAT 60.609 50.000 7.97 0.00 0.00 2.71
95 96 0.179156 GGCGGCACAGATTGAACATG 60.179 55.000 3.07 0.00 0.00 3.21
96 97 0.804364 GCGGCACAGATTGAACATGA 59.196 50.000 0.00 0.00 0.00 3.07
97 98 1.402968 GCGGCACAGATTGAACATGAT 59.597 47.619 0.00 0.00 0.00 2.45
98 99 2.540361 GCGGCACAGATTGAACATGATC 60.540 50.000 0.00 0.00 0.00 2.92
99 100 2.941064 CGGCACAGATTGAACATGATCT 59.059 45.455 0.00 0.00 33.01 2.75
106 107 5.888105 CAGATTGAACATGATCTGGTTTCC 58.112 41.667 12.26 0.00 43.43 3.13
107 108 5.651139 CAGATTGAACATGATCTGGTTTCCT 59.349 40.000 12.26 0.00 43.43 3.36
108 109 6.152323 CAGATTGAACATGATCTGGTTTCCTT 59.848 38.462 12.26 0.00 43.43 3.36
109 110 6.723052 AGATTGAACATGATCTGGTTTCCTTT 59.277 34.615 0.00 0.00 31.65 3.11
110 111 6.729690 TTGAACATGATCTGGTTTCCTTTT 57.270 33.333 0.00 0.00 0.00 2.27
111 112 6.729690 TGAACATGATCTGGTTTCCTTTTT 57.270 33.333 0.00 0.00 0.00 1.94
128 129 1.715785 TTTTTAGCCCTTGCCAAGCT 58.284 45.000 0.00 0.00 40.66 3.74
129 130 2.595750 TTTTAGCCCTTGCCAAGCTA 57.404 45.000 0.00 0.00 38.06 3.32
130 131 1.834188 TTTAGCCCTTGCCAAGCTAC 58.166 50.000 0.00 0.00 38.77 3.58
131 132 0.695924 TTAGCCCTTGCCAAGCTACA 59.304 50.000 0.00 0.00 38.77 2.74
132 133 0.035439 TAGCCCTTGCCAAGCTACAC 60.035 55.000 0.00 0.00 38.06 2.90
133 134 2.690778 GCCCTTGCCAAGCTACACG 61.691 63.158 0.00 0.00 0.00 4.49
134 135 1.302511 CCCTTGCCAAGCTACACGT 60.303 57.895 0.00 0.00 0.00 4.49
135 136 0.036765 CCCTTGCCAAGCTACACGTA 60.037 55.000 0.00 0.00 0.00 3.57
136 137 1.076332 CCTTGCCAAGCTACACGTAC 58.924 55.000 0.00 0.00 0.00 3.67
137 138 0.713883 CTTGCCAAGCTACACGTACG 59.286 55.000 15.01 15.01 0.00 3.67
138 139 0.314618 TTGCCAAGCTACACGTACGA 59.685 50.000 24.41 0.00 0.00 3.43
139 140 0.387622 TGCCAAGCTACACGTACGAC 60.388 55.000 24.41 5.62 0.00 4.34
140 141 0.109412 GCCAAGCTACACGTACGACT 60.109 55.000 24.41 8.48 0.00 4.18
141 142 1.614385 CCAAGCTACACGTACGACTG 58.386 55.000 24.41 13.47 0.00 3.51
142 143 1.068748 CCAAGCTACACGTACGACTGT 60.069 52.381 24.41 18.82 0.00 3.55
143 144 2.160219 CCAAGCTACACGTACGACTGTA 59.840 50.000 24.41 18.94 0.00 2.74
144 145 3.159026 CAAGCTACACGTACGACTGTAC 58.841 50.000 24.41 14.20 46.09 2.90
151 152 3.600493 GTACGACTGTACGAGCAGG 57.400 57.895 13.53 2.30 41.41 4.85
152 153 0.098376 GTACGACTGTACGAGCAGGG 59.902 60.000 13.53 8.52 41.41 4.45
153 154 1.028330 TACGACTGTACGAGCAGGGG 61.028 60.000 13.53 8.25 40.59 4.79
154 155 2.044555 CGACTGTACGAGCAGGGGA 61.045 63.158 13.53 0.00 40.59 4.81
155 156 1.384989 CGACTGTACGAGCAGGGGAT 61.385 60.000 13.53 0.00 40.59 3.85
156 157 0.824759 GACTGTACGAGCAGGGGATT 59.175 55.000 13.53 0.00 40.59 3.01
157 158 1.207329 GACTGTACGAGCAGGGGATTT 59.793 52.381 13.53 0.00 40.59 2.17
158 159 1.628846 ACTGTACGAGCAGGGGATTTT 59.371 47.619 13.53 0.00 40.59 1.82
159 160 2.039879 ACTGTACGAGCAGGGGATTTTT 59.960 45.455 13.53 0.00 40.59 1.94
160 161 2.678336 CTGTACGAGCAGGGGATTTTTC 59.322 50.000 0.00 0.00 33.11 2.29
161 162 1.664151 GTACGAGCAGGGGATTTTTCG 59.336 52.381 0.00 0.00 0.00 3.46
162 163 0.676782 ACGAGCAGGGGATTTTTCGG 60.677 55.000 0.00 0.00 32.77 4.30
163 164 0.392461 CGAGCAGGGGATTTTTCGGA 60.392 55.000 0.00 0.00 0.00 4.55
164 165 1.834188 GAGCAGGGGATTTTTCGGAA 58.166 50.000 0.00 0.00 0.00 4.30
165 166 2.167662 GAGCAGGGGATTTTTCGGAAA 58.832 47.619 0.00 0.00 0.00 3.13
166 167 2.560981 GAGCAGGGGATTTTTCGGAAAA 59.439 45.455 11.68 11.68 38.96 2.29
167 168 2.299013 AGCAGGGGATTTTTCGGAAAAC 59.701 45.455 15.06 5.48 37.56 2.43
168 169 2.299013 GCAGGGGATTTTTCGGAAAACT 59.701 45.455 15.06 10.33 37.56 2.66
169 170 3.860754 GCAGGGGATTTTTCGGAAAACTG 60.861 47.826 15.06 17.35 37.56 3.16
170 171 3.320826 CAGGGGATTTTTCGGAAAACTGT 59.679 43.478 15.06 5.23 37.56 3.55
171 172 3.320826 AGGGGATTTTTCGGAAAACTGTG 59.679 43.478 15.06 0.00 37.56 3.66
172 173 3.554129 GGGGATTTTTCGGAAAACTGTGG 60.554 47.826 15.06 0.00 37.56 4.17
173 174 3.069016 GGGATTTTTCGGAAAACTGTGGT 59.931 43.478 15.06 0.00 37.56 4.16
174 175 4.442332 GGGATTTTTCGGAAAACTGTGGTT 60.442 41.667 15.06 0.00 37.56 3.67
175 176 5.221283 GGGATTTTTCGGAAAACTGTGGTTA 60.221 40.000 15.06 0.00 37.56 2.85
176 177 6.274579 GGATTTTTCGGAAAACTGTGGTTAA 58.725 36.000 15.06 0.00 37.56 2.01
177 178 6.419710 GGATTTTTCGGAAAACTGTGGTTAAG 59.580 38.462 15.06 0.00 37.56 1.85
178 179 3.974871 TTCGGAAAACTGTGGTTAAGC 57.025 42.857 0.00 0.00 34.90 3.09
179 180 1.868498 TCGGAAAACTGTGGTTAAGCG 59.132 47.619 0.00 0.00 34.90 4.68
180 181 1.069500 CGGAAAACTGTGGTTAAGCGG 60.069 52.381 0.00 0.00 34.90 5.52
181 182 1.335597 GGAAAACTGTGGTTAAGCGGC 60.336 52.381 0.00 0.00 34.90 6.53
182 183 1.607148 GAAAACTGTGGTTAAGCGGCT 59.393 47.619 0.00 0.00 34.90 5.52
183 184 0.951558 AAACTGTGGTTAAGCGGCTG 59.048 50.000 1.81 2.85 34.90 4.85
184 185 0.889186 AACTGTGGTTAAGCGGCTGG 60.889 55.000 1.81 0.00 33.39 4.85
185 186 1.302511 CTGTGGTTAAGCGGCTGGT 60.303 57.895 1.81 0.00 0.00 4.00
186 187 1.577328 CTGTGGTTAAGCGGCTGGTG 61.577 60.000 1.81 0.00 0.00 4.17
187 188 2.033448 TGGTTAAGCGGCTGGTGG 59.967 61.111 1.81 0.00 0.00 4.61
188 189 2.750237 GGTTAAGCGGCTGGTGGG 60.750 66.667 1.81 0.00 0.00 4.61
189 190 2.349755 GTTAAGCGGCTGGTGGGA 59.650 61.111 1.81 0.00 0.00 4.37
190 191 1.077716 GTTAAGCGGCTGGTGGGAT 60.078 57.895 1.81 0.00 0.00 3.85
191 192 0.679960 GTTAAGCGGCTGGTGGGATT 60.680 55.000 1.81 0.00 0.00 3.01
192 193 0.393808 TTAAGCGGCTGGTGGGATTC 60.394 55.000 1.81 0.00 0.00 2.52
193 194 2.265467 TAAGCGGCTGGTGGGATTCC 62.265 60.000 1.81 0.00 0.00 3.01
194 195 4.424711 GCGGCTGGTGGGATTCCA 62.425 66.667 4.80 0.00 41.58 3.53
204 205 2.575921 TGGGATTCCACCTCTGATCT 57.424 50.000 4.80 0.00 38.32 2.75
205 206 2.121948 TGGGATTCCACCTCTGATCTG 58.878 52.381 4.80 0.00 38.32 2.90
206 207 2.122768 GGGATTCCACCTCTGATCTGT 58.877 52.381 4.80 0.00 0.00 3.41
207 208 3.309296 GGGATTCCACCTCTGATCTGTA 58.691 50.000 4.80 0.00 0.00 2.74
208 209 3.070302 GGGATTCCACCTCTGATCTGTAC 59.930 52.174 4.80 0.00 0.00 2.90
209 210 3.964031 GGATTCCACCTCTGATCTGTACT 59.036 47.826 0.00 0.00 0.00 2.73
210 211 5.141182 GGATTCCACCTCTGATCTGTACTA 58.859 45.833 0.00 0.00 0.00 1.82
211 212 5.777732 GGATTCCACCTCTGATCTGTACTAT 59.222 44.000 0.00 0.00 0.00 2.12
212 213 6.948886 GGATTCCACCTCTGATCTGTACTATA 59.051 42.308 0.00 0.00 0.00 1.31
213 214 7.617723 GGATTCCACCTCTGATCTGTACTATAT 59.382 40.741 0.00 0.00 0.00 0.86
214 215 9.688091 GATTCCACCTCTGATCTGTACTATATA 57.312 37.037 0.00 0.00 0.00 0.86
217 218 9.688091 TCCACCTCTGATCTGTACTATATATTC 57.312 37.037 0.00 0.00 0.00 1.75
218 219 9.467796 CCACCTCTGATCTGTACTATATATTCA 57.532 37.037 0.00 0.00 0.00 2.57
220 221 9.168451 ACCTCTGATCTGTACTATATATTCACG 57.832 37.037 0.00 0.00 0.00 4.35
221 222 9.384764 CCTCTGATCTGTACTATATATTCACGA 57.615 37.037 0.00 0.00 0.00 4.35
225 226 8.827677 TGATCTGTACTATATATTCACGATCCG 58.172 37.037 0.00 0.00 0.00 4.18
226 227 8.959705 ATCTGTACTATATATTCACGATCCGA 57.040 34.615 0.00 0.00 0.00 4.55
227 228 8.959705 TCTGTACTATATATTCACGATCCGAT 57.040 34.615 0.00 0.00 0.00 4.18
228 229 8.827677 TCTGTACTATATATTCACGATCCGATG 58.172 37.037 0.00 0.00 0.00 3.84
229 230 7.927048 TGTACTATATATTCACGATCCGATGG 58.073 38.462 0.00 0.00 0.00 3.51
230 231 5.833082 ACTATATATTCACGATCCGATGGC 58.167 41.667 0.00 0.00 0.00 4.40
231 232 2.386661 ATATTCACGATCCGATGGCC 57.613 50.000 0.00 0.00 0.00 5.36
232 233 0.320374 TATTCACGATCCGATGGCCC 59.680 55.000 0.00 0.00 0.00 5.80
233 234 1.695114 ATTCACGATCCGATGGCCCA 61.695 55.000 0.00 0.00 0.00 5.36
234 235 2.587322 TTCACGATCCGATGGCCCAC 62.587 60.000 0.00 0.00 0.00 4.61
235 236 4.221422 ACGATCCGATGGCCCACG 62.221 66.667 0.00 5.92 0.00 4.94
236 237 3.911698 CGATCCGATGGCCCACGA 61.912 66.667 18.01 1.09 0.00 4.35
237 238 2.029666 GATCCGATGGCCCACGAG 59.970 66.667 18.01 9.59 0.00 4.18
238 239 3.521529 GATCCGATGGCCCACGAGG 62.522 68.421 18.01 6.84 39.47 4.63
239 240 4.770362 TCCGATGGCCCACGAGGA 62.770 66.667 18.01 8.97 38.24 3.71
240 241 3.781307 CCGATGGCCCACGAGGAA 61.781 66.667 18.01 0.00 38.24 3.36
241 242 2.267642 CGATGGCCCACGAGGAAA 59.732 61.111 12.32 0.00 38.24 3.13
242 243 1.815421 CGATGGCCCACGAGGAAAG 60.815 63.158 12.32 0.00 38.24 2.62
243 244 1.299976 GATGGCCCACGAGGAAAGT 59.700 57.895 0.00 0.00 38.24 2.66
244 245 0.322546 GATGGCCCACGAGGAAAGTT 60.323 55.000 0.00 0.00 38.24 2.66
245 246 0.112412 ATGGCCCACGAGGAAAGTTT 59.888 50.000 0.00 0.00 38.24 2.66
246 247 0.106419 TGGCCCACGAGGAAAGTTTT 60.106 50.000 0.00 0.00 38.24 2.43
247 248 0.596577 GGCCCACGAGGAAAGTTTTC 59.403 55.000 0.00 0.00 38.24 2.29
248 249 1.314730 GCCCACGAGGAAAGTTTTCA 58.685 50.000 0.00 0.00 38.92 2.69
249 250 1.679153 GCCCACGAGGAAAGTTTTCAA 59.321 47.619 0.00 0.00 38.92 2.69
250 251 2.287608 GCCCACGAGGAAAGTTTTCAAG 60.288 50.000 0.00 0.00 38.92 3.02
251 252 2.949644 CCCACGAGGAAAGTTTTCAAGT 59.050 45.455 0.00 0.00 38.92 3.16
252 253 3.380320 CCCACGAGGAAAGTTTTCAAGTT 59.620 43.478 0.00 0.00 38.92 2.66
253 254 4.142249 CCCACGAGGAAAGTTTTCAAGTTT 60.142 41.667 0.00 0.00 38.92 2.66
254 255 5.407502 CCACGAGGAAAGTTTTCAAGTTTT 58.592 37.500 6.90 0.00 38.92 2.43
255 256 5.515270 CCACGAGGAAAGTTTTCAAGTTTTC 59.485 40.000 6.90 0.00 38.92 2.29
256 257 6.090129 CACGAGGAAAGTTTTCAAGTTTTCA 58.910 36.000 6.90 0.00 38.92 2.69
257 258 6.033513 CACGAGGAAAGTTTTCAAGTTTTCAC 59.966 38.462 6.90 0.00 38.92 3.18
258 259 5.515270 CGAGGAAAGTTTTCAAGTTTTCACC 59.485 40.000 6.90 0.00 38.92 4.02
259 260 5.407502 AGGAAAGTTTTCAAGTTTTCACCG 58.592 37.500 6.90 0.00 38.92 4.94
260 261 5.184287 AGGAAAGTTTTCAAGTTTTCACCGA 59.816 36.000 6.90 0.00 38.92 4.69
261 262 5.865013 GGAAAGTTTTCAAGTTTTCACCGAA 59.135 36.000 6.90 0.00 38.92 4.30
262 263 6.533723 GGAAAGTTTTCAAGTTTTCACCGAAT 59.466 34.615 6.90 0.00 38.92 3.34
263 264 7.064134 GGAAAGTTTTCAAGTTTTCACCGAATT 59.936 33.333 6.90 0.00 38.92 2.17
264 265 6.885735 AGTTTTCAAGTTTTCACCGAATTG 57.114 33.333 0.00 0.00 0.00 2.32
265 266 5.810074 AGTTTTCAAGTTTTCACCGAATTGG 59.190 36.000 0.00 0.00 46.41 3.16
266 267 3.363341 TCAAGTTTTCACCGAATTGGC 57.637 42.857 0.00 0.00 43.94 4.52
267 268 2.690497 TCAAGTTTTCACCGAATTGGCA 59.310 40.909 0.00 0.00 43.94 4.92
268 269 3.320541 TCAAGTTTTCACCGAATTGGCAT 59.679 39.130 0.00 0.00 43.94 4.40
269 270 4.057432 CAAGTTTTCACCGAATTGGCATT 58.943 39.130 0.00 0.00 43.94 3.56
270 271 4.335400 AGTTTTCACCGAATTGGCATTT 57.665 36.364 0.00 0.00 43.94 2.32
271 272 4.702831 AGTTTTCACCGAATTGGCATTTT 58.297 34.783 0.00 0.00 43.94 1.82
272 273 4.749598 AGTTTTCACCGAATTGGCATTTTC 59.250 37.500 0.00 0.00 43.94 2.29
273 274 4.327982 TTTCACCGAATTGGCATTTTCA 57.672 36.364 10.23 0.00 43.94 2.69
274 275 3.296322 TCACCGAATTGGCATTTTCAC 57.704 42.857 10.23 0.00 43.94 3.18
275 276 2.890311 TCACCGAATTGGCATTTTCACT 59.110 40.909 10.23 0.00 43.94 3.41
276 277 3.320541 TCACCGAATTGGCATTTTCACTT 59.679 39.130 10.23 0.00 43.94 3.16
277 278 3.429543 CACCGAATTGGCATTTTCACTTG 59.570 43.478 10.23 2.07 43.94 3.16
278 279 3.320541 ACCGAATTGGCATTTTCACTTGA 59.679 39.130 10.23 0.00 43.94 3.02
279 280 4.021192 ACCGAATTGGCATTTTCACTTGAT 60.021 37.500 10.23 0.00 43.94 2.57
280 281 5.184864 ACCGAATTGGCATTTTCACTTGATA 59.815 36.000 10.23 0.00 43.94 2.15
281 282 5.516339 CCGAATTGGCATTTTCACTTGATAC 59.484 40.000 10.23 0.00 0.00 2.24
282 283 6.324819 CGAATTGGCATTTTCACTTGATACT 58.675 36.000 10.23 0.00 0.00 2.12
283 284 6.808212 CGAATTGGCATTTTCACTTGATACTT 59.192 34.615 10.23 0.00 0.00 2.24
284 285 7.201376 CGAATTGGCATTTTCACTTGATACTTG 60.201 37.037 10.23 0.00 0.00 3.16
285 286 5.389859 TGGCATTTTCACTTGATACTTGG 57.610 39.130 0.00 0.00 0.00 3.61
286 287 4.176271 GGCATTTTCACTTGATACTTGGC 58.824 43.478 0.00 0.00 0.00 4.52
287 288 4.176271 GCATTTTCACTTGATACTTGGCC 58.824 43.478 0.00 0.00 0.00 5.36
305 306 3.317711 TGGCCCATATTTTATCACAAGCG 59.682 43.478 0.00 0.00 0.00 4.68
711 716 2.125106 CTACAACTGGCGCCCTCC 60.125 66.667 26.77 0.00 0.00 4.30
712 717 3.682292 CTACAACTGGCGCCCTCCC 62.682 68.421 26.77 0.00 0.00 4.30
714 719 4.785453 CAACTGGCGCCCTCCCTC 62.785 72.222 26.77 0.00 0.00 4.30
772 777 0.040058 AGATGGTCATTGCCTTGGCA 59.960 50.000 10.65 10.65 0.00 4.92
773 778 0.458669 GATGGTCATTGCCTTGGCAG 59.541 55.000 14.33 4.59 0.00 4.85
774 779 0.040058 ATGGTCATTGCCTTGGCAGA 59.960 50.000 14.33 6.94 0.00 4.26
777 782 1.093159 GTCATTGCCTTGGCAGAGAG 58.907 55.000 14.33 6.43 0.00 3.20
778 783 0.034767 TCATTGCCTTGGCAGAGAGG 60.035 55.000 14.33 2.45 36.09 3.69
783 788 2.511145 CTTGGCAGAGAGGCGAGC 60.511 66.667 0.00 0.00 46.08 5.03
786 791 4.567385 GGCAGAGAGGCGAGCGAG 62.567 72.222 0.00 0.00 33.57 5.03
787 792 4.567385 GCAGAGAGGCGAGCGAGG 62.567 72.222 0.00 0.00 0.00 4.63
788 793 2.826287 CAGAGAGGCGAGCGAGGA 60.826 66.667 0.00 0.00 0.00 3.71
789 794 2.515991 AGAGAGGCGAGCGAGGAG 60.516 66.667 0.00 0.00 0.00 3.69
823 842 0.444260 GAGAAAAAGAAGAGCGGCCG 59.556 55.000 24.05 24.05 0.00 6.13
871 890 3.735029 GCCTCGTCGTCGGTCACT 61.735 66.667 1.55 0.00 37.69 3.41
918 937 4.767255 CGCAGGACAGGACCAGCC 62.767 72.222 0.00 0.00 38.87 4.85
919 938 4.767255 GCAGGACAGGACCAGCCG 62.767 72.222 0.00 0.00 43.43 5.52
920 939 4.767255 CAGGACAGGACCAGCCGC 62.767 72.222 0.00 0.00 43.43 6.53
984 1003 4.084888 CGCGCCGTTTGGAGGAAC 62.085 66.667 0.00 0.00 37.49 3.62
992 1011 1.002468 CGTTTGGAGGAACAAGCAGTG 60.002 52.381 0.00 0.00 31.98 3.66
1066 1085 2.936498 GGAAGCAATGTACGTACATGCT 59.064 45.455 34.71 34.71 45.55 3.79
1074 1093 1.846782 GTACGTACATGCTGCTCTTCG 59.153 52.381 20.67 2.54 0.00 3.79
1082 1101 0.037882 TGCTGCTCTTCGTCTTCCTG 60.038 55.000 0.00 0.00 0.00 3.86
1097 1116 4.038642 GTCTTCCTGTCTCTCTTGTCAAGT 59.961 45.833 12.30 0.00 0.00 3.16
1098 1117 5.241949 GTCTTCCTGTCTCTCTTGTCAAGTA 59.758 44.000 12.30 1.92 0.00 2.24
1099 1118 5.475220 TCTTCCTGTCTCTCTTGTCAAGTAG 59.525 44.000 12.30 10.92 0.00 2.57
1100 1119 4.730966 TCCTGTCTCTCTTGTCAAGTAGT 58.269 43.478 12.30 0.00 0.00 2.73
1101 1120 5.877491 TCCTGTCTCTCTTGTCAAGTAGTA 58.123 41.667 12.30 5.36 0.00 1.82
1102 1121 5.706369 TCCTGTCTCTCTTGTCAAGTAGTAC 59.294 44.000 12.30 7.87 0.00 2.73
1156 1191 5.978919 TGTGTGCTTGAATCTTTTAGCAAAG 59.021 36.000 0.00 0.00 44.39 2.77
1164 1199 8.831715 TTGAATCTTTTAGCAAAGGAAAATCC 57.168 30.769 0.00 0.00 40.08 3.01
1171 1206 4.326504 AGCAAAGGAAAATCCAGTGTTG 57.673 40.909 0.00 0.00 39.61 3.33
1173 1208 4.038402 AGCAAAGGAAAATCCAGTGTTGAG 59.962 41.667 0.00 0.00 39.61 3.02
1222 1260 6.043411 CCGGTCCTCTGTATAAGAAAAGAAG 58.957 44.000 0.00 0.00 33.37 2.85
1228 1266 9.284968 TCCTCTGTATAAGAAAAGAAGGTTTTG 57.715 33.333 0.00 0.00 33.37 2.44
1284 1322 7.008992 GCAAAGGAAAATCTCAAGAAATGATCG 59.991 37.037 0.00 0.00 37.44 3.69
1341 1379 9.712305 ATCTAGTTTGATGATAAGTATTTCCGG 57.288 33.333 0.00 0.00 0.00 5.14
1342 1380 8.920174 TCTAGTTTGATGATAAGTATTTCCGGA 58.080 33.333 0.00 0.00 0.00 5.14
1343 1381 7.787725 AGTTTGATGATAAGTATTTCCGGAC 57.212 36.000 1.83 0.00 0.00 4.79
1344 1382 6.479001 AGTTTGATGATAAGTATTTCCGGACG 59.521 38.462 1.83 0.00 0.00 4.79
1345 1383 4.878439 TGATGATAAGTATTTCCGGACGG 58.122 43.478 1.83 3.96 0.00 4.79
1346 1384 4.585581 TGATGATAAGTATTTCCGGACGGA 59.414 41.667 1.83 9.76 43.52 4.69
1347 1385 4.579454 TGATAAGTATTTCCGGACGGAG 57.421 45.455 13.64 0.00 46.06 4.63
1348 1386 3.319972 TGATAAGTATTTCCGGACGGAGG 59.680 47.826 13.64 0.00 46.06 4.30
1349 1387 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1354 1392 2.445492 TTTCCGGACGGAGGGGTAGT 62.445 60.000 13.64 0.00 46.06 2.73
1375 1413 4.080863 AGTTGTTAGCCATTAGACTCCCTG 60.081 45.833 0.00 0.00 0.00 4.45
1379 1417 1.918957 AGCCATTAGACTCCCTGCTTT 59.081 47.619 0.00 0.00 0.00 3.51
2054 2237 1.448540 CATCGGCCTGGTCAGTCAC 60.449 63.158 0.00 0.00 0.00 3.67
2085 2930 5.123936 TGCATCATCAATCCTTCTCTCTTG 58.876 41.667 0.00 0.00 0.00 3.02
2260 3105 2.572284 GAGTACGGCGGCTCACTT 59.428 61.111 22.49 0.00 0.00 3.16
2554 3408 2.026879 GGCGTGCTCTCTCCGATC 59.973 66.667 0.00 0.00 0.00 3.69
2632 3486 4.918201 CCGGCGATCCTTCAGGGC 62.918 72.222 9.30 0.00 35.41 5.19
2664 3518 1.000827 CGAGATGGAGAAGATGGACGG 60.001 57.143 0.00 0.00 0.00 4.79
2666 3520 3.223435 GAGATGGAGAAGATGGACGGTA 58.777 50.000 0.00 0.00 0.00 4.02
2686 3540 1.302511 GGGTGTGCACGTCAAGGAT 60.303 57.895 13.13 0.00 0.00 3.24
2770 3624 4.465446 TGCGGAGGAGGAGGAGGG 62.465 72.222 0.00 0.00 0.00 4.30
2955 3812 8.176814 TCGACTGAACTGTAAATTTTATACGG 57.823 34.615 0.00 0.00 36.04 4.02
3004 3861 4.436451 GGGTCCGTAATTTCGCTTAGTTTG 60.436 45.833 0.00 0.00 0.00 2.93
3030 3887 9.750125 GTTTTTCTGTACTTCATTTGGAGAATT 57.250 29.630 0.00 0.00 0.00 2.17
3058 4257 5.627735 GCATCTCTAAGAACACCCTCATTCA 60.628 44.000 0.00 0.00 0.00 2.57
3060 4259 6.227298 TCTCTAAGAACACCCTCATTCATC 57.773 41.667 0.00 0.00 0.00 2.92
3074 4273 4.641396 TCATTCATCCATGGATACGTTCC 58.359 43.478 26.87 1.02 45.69 3.62
3142 4341 8.698973 TTGTCACCCAAATAAATTCTACTTGA 57.301 30.769 0.00 0.00 0.00 3.02
3143 4342 8.698973 TGTCACCCAAATAAATTCTACTTGAA 57.301 30.769 0.00 0.00 39.24 2.69
3144 4343 9.308000 TGTCACCCAAATAAATTCTACTTGAAT 57.692 29.630 0.00 0.00 46.49 2.57
3145 4344 9.573133 GTCACCCAAATAAATTCTACTTGAATG 57.427 33.333 0.00 0.00 43.99 2.67
3146 4345 9.308000 TCACCCAAATAAATTCTACTTGAATGT 57.692 29.630 0.00 0.00 43.99 2.71
3147 4346 9.357652 CACCCAAATAAATTCTACTTGAATGTG 57.642 33.333 0.00 0.00 43.99 3.21
3148 4347 8.034804 ACCCAAATAAATTCTACTTGAATGTGC 58.965 33.333 0.00 0.00 43.99 4.57
3149 4348 7.492344 CCCAAATAAATTCTACTTGAATGTGCC 59.508 37.037 0.00 0.00 43.99 5.01
3150 4349 7.492344 CCAAATAAATTCTACTTGAATGTGCCC 59.508 37.037 0.00 0.00 43.99 5.36
3151 4350 6.715347 ATAAATTCTACTTGAATGTGCCCC 57.285 37.500 0.00 0.00 43.99 5.80
3152 4351 4.322057 AATTCTACTTGAATGTGCCCCT 57.678 40.909 0.00 0.00 43.99 4.79
3153 4352 3.806949 TTCTACTTGAATGTGCCCCTT 57.193 42.857 0.00 0.00 0.00 3.95
3154 4353 3.350219 TCTACTTGAATGTGCCCCTTC 57.650 47.619 0.00 0.00 0.00 3.46
3155 4354 2.026262 TCTACTTGAATGTGCCCCTTCC 60.026 50.000 0.00 0.00 0.00 3.46
3156 4355 0.482446 ACTTGAATGTGCCCCTTCCA 59.518 50.000 0.00 0.00 0.00 3.53
3157 4356 1.077663 ACTTGAATGTGCCCCTTCCAT 59.922 47.619 0.00 0.00 0.00 3.41
3393 4594 2.250939 CGTCTTTGCTTCGGTGGCA 61.251 57.895 0.00 0.00 37.97 4.92
3476 4677 3.114606 GGTTGGGGATGGATTTGGAAAT 58.885 45.455 0.00 0.00 0.00 2.17
3632 4833 1.131126 GATTGTGGTCTGCATCAACGG 59.869 52.381 0.00 0.00 0.00 4.44
3666 4867 2.046988 CATGTGCTGGGCTCGTGA 60.047 61.111 7.70 0.00 40.20 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.501610 CTAGCTCTCCAACGGCCC 59.498 66.667 0.00 0.00 0.00 5.80
1 2 2.501610 CCTAGCTCTCCAACGGCC 59.498 66.667 0.00 0.00 0.00 6.13
2 3 2.501610 CCCTAGCTCTCCAACGGC 59.498 66.667 0.00 0.00 0.00 5.68
4 5 1.153549 GTGCCCTAGCTCTCCAACG 60.154 63.158 0.00 0.00 40.80 4.10
5 6 0.391793 GTGTGCCCTAGCTCTCCAAC 60.392 60.000 0.00 0.00 40.80 3.77
6 7 1.888436 CGTGTGCCCTAGCTCTCCAA 61.888 60.000 0.00 0.00 40.80 3.53
7 8 2.351244 CGTGTGCCCTAGCTCTCCA 61.351 63.158 0.00 0.00 40.80 3.86
8 9 2.286127 GACGTGTGCCCTAGCTCTCC 62.286 65.000 0.00 0.00 40.80 3.71
9 10 1.139947 GACGTGTGCCCTAGCTCTC 59.860 63.158 0.00 0.00 40.80 3.20
10 11 2.352032 GGACGTGTGCCCTAGCTCT 61.352 63.158 0.00 0.00 40.80 4.09
11 12 2.184579 GGACGTGTGCCCTAGCTC 59.815 66.667 0.00 0.00 40.80 4.09
12 13 3.760035 CGGACGTGTGCCCTAGCT 61.760 66.667 0.00 0.00 40.80 3.32
14 15 4.814294 GGCGGACGTGTGCCCTAG 62.814 72.222 15.16 0.00 45.73 3.02
32 33 3.818787 CATGTGCGCTGGCCCTTC 61.819 66.667 9.73 0.00 38.85 3.46
43 44 2.410469 GCTTGGATCGCCATGTGC 59.590 61.111 0.00 0.00 45.46 4.57
44 45 2.711311 CGCTTGGATCGCCATGTG 59.289 61.111 0.00 0.00 45.46 3.21
45 46 2.514592 CCGCTTGGATCGCCATGT 60.515 61.111 0.00 0.00 45.46 3.21
46 47 3.282157 CCCGCTTGGATCGCCATG 61.282 66.667 0.00 0.00 45.46 3.66
47 48 3.479203 TCCCGCTTGGATCGCCAT 61.479 61.111 0.00 0.00 45.46 4.40
55 56 4.785453 GAGCCTGGTCCCGCTTGG 62.785 72.222 2.26 0.00 34.84 3.61
56 57 4.785453 GGAGCCTGGTCCCGCTTG 62.785 72.222 3.98 0.00 34.84 4.01
59 60 4.864334 CATGGAGCCTGGTCCCGC 62.864 72.222 12.54 0.00 35.49 6.13
60 61 4.181010 CCATGGAGCCTGGTCCCG 62.181 72.222 5.56 4.25 35.49 5.14
61 62 4.512914 GCCATGGAGCCTGGTCCC 62.513 72.222 18.40 6.28 35.49 4.46
62 63 4.864334 CGCCATGGAGCCTGGTCC 62.864 72.222 18.40 8.43 36.10 4.46
63 64 4.864334 CCGCCATGGAGCCTGGTC 62.864 72.222 18.40 0.00 42.00 4.02
69 70 4.783621 TCTGTGCCGCCATGGAGC 62.784 66.667 18.40 18.06 42.00 4.70
70 71 1.452651 AATCTGTGCCGCCATGGAG 60.453 57.895 18.40 13.36 42.00 3.86
71 72 1.750018 CAATCTGTGCCGCCATGGA 60.750 57.895 18.40 0.00 42.00 3.41
72 73 1.314534 TTCAATCTGTGCCGCCATGG 61.315 55.000 7.63 7.63 42.50 3.66
73 74 0.179156 GTTCAATCTGTGCCGCCATG 60.179 55.000 0.00 0.00 0.00 3.66
74 75 0.608856 TGTTCAATCTGTGCCGCCAT 60.609 50.000 0.00 0.00 0.00 4.40
75 76 0.608856 ATGTTCAATCTGTGCCGCCA 60.609 50.000 0.00 0.00 0.00 5.69
76 77 0.179156 CATGTTCAATCTGTGCCGCC 60.179 55.000 0.00 0.00 0.00 6.13
77 78 0.804364 TCATGTTCAATCTGTGCCGC 59.196 50.000 0.00 0.00 0.00 6.53
78 79 2.941064 AGATCATGTTCAATCTGTGCCG 59.059 45.455 6.55 0.00 31.09 5.69
79 80 3.066342 CCAGATCATGTTCAATCTGTGCC 59.934 47.826 16.65 0.00 44.82 5.01
80 81 3.693085 ACCAGATCATGTTCAATCTGTGC 59.307 43.478 16.65 0.00 44.82 4.57
81 82 5.892160 AACCAGATCATGTTCAATCTGTG 57.108 39.130 16.65 12.07 44.82 3.66
82 83 5.416952 GGAAACCAGATCATGTTCAATCTGT 59.583 40.000 16.65 6.46 44.82 3.41
83 84 5.651139 AGGAAACCAGATCATGTTCAATCTG 59.349 40.000 12.89 12.89 45.52 2.90
84 85 5.824421 AGGAAACCAGATCATGTTCAATCT 58.176 37.500 6.55 0.00 32.44 2.40
85 86 6.521151 AAGGAAACCAGATCATGTTCAATC 57.479 37.500 6.55 0.00 0.00 2.67
86 87 6.923199 AAAGGAAACCAGATCATGTTCAAT 57.077 33.333 6.55 0.00 0.00 2.57
87 88 6.729690 AAAAGGAAACCAGATCATGTTCAA 57.270 33.333 6.55 0.00 0.00 2.69
88 89 6.729690 AAAAAGGAAACCAGATCATGTTCA 57.270 33.333 6.55 0.00 0.00 3.18
109 110 1.715785 AGCTTGGCAAGGGCTAAAAA 58.284 45.000 27.25 0.00 40.18 1.94
110 111 2.167662 GTAGCTTGGCAAGGGCTAAAA 58.832 47.619 27.25 4.04 40.18 1.52
111 112 1.074727 TGTAGCTTGGCAAGGGCTAAA 59.925 47.619 27.25 16.70 40.18 1.85
112 113 0.695924 TGTAGCTTGGCAAGGGCTAA 59.304 50.000 27.25 12.41 39.74 3.09
113 114 0.035439 GTGTAGCTTGGCAAGGGCTA 60.035 55.000 27.25 20.70 40.87 3.93
114 115 1.303643 GTGTAGCTTGGCAAGGGCT 60.304 57.895 27.25 21.71 40.87 5.19
115 116 2.690778 CGTGTAGCTTGGCAAGGGC 61.691 63.158 27.25 15.76 40.13 5.19
116 117 0.036765 TACGTGTAGCTTGGCAAGGG 60.037 55.000 27.25 5.72 0.00 3.95
117 118 1.076332 GTACGTGTAGCTTGGCAAGG 58.924 55.000 27.25 12.65 0.00 3.61
118 119 0.713883 CGTACGTGTAGCTTGGCAAG 59.286 55.000 22.75 22.75 0.00 4.01
119 120 0.314618 TCGTACGTGTAGCTTGGCAA 59.685 50.000 16.05 0.00 0.00 4.52
120 121 0.387622 GTCGTACGTGTAGCTTGGCA 60.388 55.000 16.05 0.00 0.00 4.92
121 122 0.109412 AGTCGTACGTGTAGCTTGGC 60.109 55.000 16.05 0.00 0.00 4.52
122 123 1.068748 ACAGTCGTACGTGTAGCTTGG 60.069 52.381 16.05 0.00 0.00 3.61
123 124 2.327081 ACAGTCGTACGTGTAGCTTG 57.673 50.000 16.05 6.93 0.00 4.01
124 125 3.461946 GTACAGTCGTACGTGTAGCTT 57.538 47.619 16.05 0.00 38.77 3.74
133 134 0.098376 CCCTGCTCGTACAGTCGTAC 59.902 60.000 6.68 0.00 43.91 3.67
134 135 1.028330 CCCCTGCTCGTACAGTCGTA 61.028 60.000 6.68 0.00 35.83 3.43
135 136 2.341101 CCCCTGCTCGTACAGTCGT 61.341 63.158 6.68 0.00 35.83 4.34
136 137 1.384989 ATCCCCTGCTCGTACAGTCG 61.385 60.000 6.68 0.00 35.83 4.18
137 138 0.824759 AATCCCCTGCTCGTACAGTC 59.175 55.000 6.68 0.00 35.83 3.51
138 139 1.276622 AAATCCCCTGCTCGTACAGT 58.723 50.000 6.68 0.00 35.83 3.55
139 140 2.403252 AAAATCCCCTGCTCGTACAG 57.597 50.000 0.00 1.16 37.42 2.74
140 141 2.706890 GAAAAATCCCCTGCTCGTACA 58.293 47.619 0.00 0.00 0.00 2.90
141 142 1.664151 CGAAAAATCCCCTGCTCGTAC 59.336 52.381 0.00 0.00 0.00 3.67
142 143 1.406341 CCGAAAAATCCCCTGCTCGTA 60.406 52.381 0.00 0.00 0.00 3.43
143 144 0.676782 CCGAAAAATCCCCTGCTCGT 60.677 55.000 0.00 0.00 0.00 4.18
144 145 0.392461 TCCGAAAAATCCCCTGCTCG 60.392 55.000 0.00 0.00 0.00 5.03
145 146 1.834188 TTCCGAAAAATCCCCTGCTC 58.166 50.000 0.00 0.00 0.00 4.26
146 147 2.299013 GTTTTCCGAAAAATCCCCTGCT 59.701 45.455 7.88 0.00 36.77 4.24
147 148 2.299013 AGTTTTCCGAAAAATCCCCTGC 59.701 45.455 7.88 0.00 36.77 4.85
148 149 3.320826 ACAGTTTTCCGAAAAATCCCCTG 59.679 43.478 7.88 12.15 36.77 4.45
149 150 3.320826 CACAGTTTTCCGAAAAATCCCCT 59.679 43.478 7.88 0.00 36.77 4.79
150 151 3.554129 CCACAGTTTTCCGAAAAATCCCC 60.554 47.826 7.88 0.00 36.77 4.81
151 152 3.069016 ACCACAGTTTTCCGAAAAATCCC 59.931 43.478 7.88 0.00 36.77 3.85
152 153 4.316205 ACCACAGTTTTCCGAAAAATCC 57.684 40.909 7.88 0.00 36.77 3.01
153 154 6.074516 GCTTAACCACAGTTTTCCGAAAAATC 60.075 38.462 7.88 0.00 36.77 2.17
154 155 5.751509 GCTTAACCACAGTTTTCCGAAAAAT 59.248 36.000 7.88 4.30 36.77 1.82
155 156 5.103687 GCTTAACCACAGTTTTCCGAAAAA 58.896 37.500 7.88 0.00 37.42 1.94
156 157 4.674475 GCTTAACCACAGTTTTCCGAAAA 58.326 39.130 2.01 2.01 37.42 2.29
157 158 3.242804 CGCTTAACCACAGTTTTCCGAAA 60.243 43.478 0.00 0.00 37.42 3.46
158 159 2.288458 CGCTTAACCACAGTTTTCCGAA 59.712 45.455 0.00 0.00 37.42 4.30
159 160 1.868498 CGCTTAACCACAGTTTTCCGA 59.132 47.619 0.00 0.00 37.42 4.55
160 161 1.069500 CCGCTTAACCACAGTTTTCCG 60.069 52.381 0.00 0.00 37.42 4.30
161 162 1.335597 GCCGCTTAACCACAGTTTTCC 60.336 52.381 0.00 0.00 37.42 3.13
162 163 1.607148 AGCCGCTTAACCACAGTTTTC 59.393 47.619 0.00 0.00 37.42 2.29
163 164 1.336755 CAGCCGCTTAACCACAGTTTT 59.663 47.619 0.00 0.00 37.42 2.43
164 165 0.951558 CAGCCGCTTAACCACAGTTT 59.048 50.000 0.00 0.00 37.42 2.66
165 166 0.889186 CCAGCCGCTTAACCACAGTT 60.889 55.000 0.00 0.00 40.15 3.16
166 167 1.302511 CCAGCCGCTTAACCACAGT 60.303 57.895 0.00 0.00 0.00 3.55
167 168 1.302511 ACCAGCCGCTTAACCACAG 60.303 57.895 0.00 0.00 0.00 3.66
168 169 1.599518 CACCAGCCGCTTAACCACA 60.600 57.895 0.00 0.00 0.00 4.17
169 170 2.332654 CCACCAGCCGCTTAACCAC 61.333 63.158 0.00 0.00 0.00 4.16
170 171 2.033448 CCACCAGCCGCTTAACCA 59.967 61.111 0.00 0.00 0.00 3.67
171 172 2.552231 ATCCCACCAGCCGCTTAACC 62.552 60.000 0.00 0.00 0.00 2.85
172 173 0.679960 AATCCCACCAGCCGCTTAAC 60.680 55.000 0.00 0.00 0.00 2.01
173 174 0.393808 GAATCCCACCAGCCGCTTAA 60.394 55.000 0.00 0.00 0.00 1.85
174 175 1.223487 GAATCCCACCAGCCGCTTA 59.777 57.895 0.00 0.00 0.00 3.09
175 176 2.044946 GAATCCCACCAGCCGCTT 60.045 61.111 0.00 0.00 0.00 4.68
176 177 4.115199 GGAATCCCACCAGCCGCT 62.115 66.667 0.00 0.00 0.00 5.52
177 178 4.424711 TGGAATCCCACCAGCCGC 62.425 66.667 0.00 0.00 37.58 6.53
185 186 2.121948 CAGATCAGAGGTGGAATCCCA 58.878 52.381 0.00 0.00 40.95 4.37
186 187 2.122768 ACAGATCAGAGGTGGAATCCC 58.877 52.381 0.00 0.00 0.00 3.85
187 188 3.964031 AGTACAGATCAGAGGTGGAATCC 59.036 47.826 0.00 0.00 0.00 3.01
188 189 6.909550 ATAGTACAGATCAGAGGTGGAATC 57.090 41.667 0.00 0.00 0.00 2.52
191 192 9.688091 GAATATATAGTACAGATCAGAGGTGGA 57.312 37.037 0.00 0.00 0.00 4.02
192 193 9.467796 TGAATATATAGTACAGATCAGAGGTGG 57.532 37.037 0.00 0.00 0.00 4.61
194 195 9.168451 CGTGAATATATAGTACAGATCAGAGGT 57.832 37.037 0.00 0.00 0.00 3.85
195 196 9.384764 TCGTGAATATATAGTACAGATCAGAGG 57.615 37.037 0.00 0.00 0.00 3.69
199 200 8.827677 CGGATCGTGAATATATAGTACAGATCA 58.172 37.037 16.17 4.50 34.25 2.92
200 201 9.043079 TCGGATCGTGAATATATAGTACAGATC 57.957 37.037 0.00 10.34 0.00 2.75
201 202 8.959705 TCGGATCGTGAATATATAGTACAGAT 57.040 34.615 0.00 0.00 0.00 2.90
202 203 8.827677 CATCGGATCGTGAATATATAGTACAGA 58.172 37.037 0.00 0.00 0.00 3.41
203 204 8.070769 CCATCGGATCGTGAATATATAGTACAG 58.929 40.741 0.00 0.00 0.00 2.74
204 205 7.468220 GCCATCGGATCGTGAATATATAGTACA 60.468 40.741 0.00 0.00 0.00 2.90
205 206 6.856938 GCCATCGGATCGTGAATATATAGTAC 59.143 42.308 0.00 0.00 0.00 2.73
206 207 6.016527 GGCCATCGGATCGTGAATATATAGTA 60.017 42.308 0.00 0.00 0.00 1.82
207 208 5.221263 GGCCATCGGATCGTGAATATATAGT 60.221 44.000 0.00 0.00 0.00 2.12
208 209 5.223382 GGCCATCGGATCGTGAATATATAG 58.777 45.833 0.00 0.00 0.00 1.31
209 210 4.038763 GGGCCATCGGATCGTGAATATATA 59.961 45.833 4.39 0.00 0.00 0.86
210 211 3.181465 GGGCCATCGGATCGTGAATATAT 60.181 47.826 4.39 0.00 0.00 0.86
211 212 2.167693 GGGCCATCGGATCGTGAATATA 59.832 50.000 4.39 0.00 0.00 0.86
212 213 1.066143 GGGCCATCGGATCGTGAATAT 60.066 52.381 4.39 0.00 0.00 1.28
213 214 0.320374 GGGCCATCGGATCGTGAATA 59.680 55.000 4.39 0.00 0.00 1.75
214 215 1.071471 GGGCCATCGGATCGTGAAT 59.929 57.895 4.39 0.00 0.00 2.57
215 216 2.363172 TGGGCCATCGGATCGTGAA 61.363 57.895 0.00 0.00 0.00 3.18
216 217 2.762043 TGGGCCATCGGATCGTGA 60.762 61.111 0.00 0.00 0.00 4.35
217 218 2.588877 GTGGGCCATCGGATCGTG 60.589 66.667 10.70 0.00 0.00 4.35
218 219 4.221422 CGTGGGCCATCGGATCGT 62.221 66.667 10.70 0.00 0.00 3.73
219 220 3.848347 CTCGTGGGCCATCGGATCG 62.848 68.421 22.21 15.14 0.00 3.69
220 221 2.029666 CTCGTGGGCCATCGGATC 59.970 66.667 22.21 4.36 0.00 3.36
221 222 3.550431 CCTCGTGGGCCATCGGAT 61.550 66.667 22.21 0.00 0.00 4.18
222 223 4.770362 TCCTCGTGGGCCATCGGA 62.770 66.667 22.21 18.73 34.39 4.55
223 224 3.323758 TTTCCTCGTGGGCCATCGG 62.324 63.158 22.21 17.07 34.39 4.18
224 225 1.815421 CTTTCCTCGTGGGCCATCG 60.815 63.158 10.70 15.72 34.39 3.84
225 226 0.322546 AACTTTCCTCGTGGGCCATC 60.323 55.000 10.70 2.34 34.39 3.51
226 227 0.112412 AAACTTTCCTCGTGGGCCAT 59.888 50.000 10.70 0.00 34.39 4.40
227 228 0.106419 AAAACTTTCCTCGTGGGCCA 60.106 50.000 0.00 0.00 34.39 5.36
228 229 0.596577 GAAAACTTTCCTCGTGGGCC 59.403 55.000 3.23 0.00 34.39 5.80
229 230 1.314730 TGAAAACTTTCCTCGTGGGC 58.685 50.000 3.23 0.00 36.36 5.36
230 231 2.949644 ACTTGAAAACTTTCCTCGTGGG 59.050 45.455 3.23 0.00 36.36 4.61
231 232 4.632538 AACTTGAAAACTTTCCTCGTGG 57.367 40.909 0.00 0.00 36.36 4.94
232 233 6.033513 GTGAAAACTTGAAAACTTTCCTCGTG 59.966 38.462 0.00 0.00 36.36 4.35
233 234 6.090783 GTGAAAACTTGAAAACTTTCCTCGT 58.909 36.000 0.00 0.00 36.36 4.18
234 235 5.515270 GGTGAAAACTTGAAAACTTTCCTCG 59.485 40.000 0.00 0.00 36.36 4.63
235 236 5.515270 CGGTGAAAACTTGAAAACTTTCCTC 59.485 40.000 0.00 0.00 36.36 3.71
236 237 5.184287 TCGGTGAAAACTTGAAAACTTTCCT 59.816 36.000 0.00 0.00 36.36 3.36
237 238 5.404096 TCGGTGAAAACTTGAAAACTTTCC 58.596 37.500 0.00 0.00 36.36 3.13
238 239 6.937886 TTCGGTGAAAACTTGAAAACTTTC 57.062 33.333 0.00 0.00 37.69 2.62
239 240 7.148490 CCAATTCGGTGAAAACTTGAAAACTTT 60.148 33.333 0.00 0.00 0.00 2.66
240 241 6.312672 CCAATTCGGTGAAAACTTGAAAACTT 59.687 34.615 0.00 0.00 0.00 2.66
241 242 5.810074 CCAATTCGGTGAAAACTTGAAAACT 59.190 36.000 0.00 0.00 0.00 2.66
242 243 5.501736 GCCAATTCGGTGAAAACTTGAAAAC 60.502 40.000 0.00 0.00 36.97 2.43
243 244 4.568760 GCCAATTCGGTGAAAACTTGAAAA 59.431 37.500 0.00 0.00 36.97 2.29
244 245 4.116238 GCCAATTCGGTGAAAACTTGAAA 58.884 39.130 0.00 0.00 36.97 2.69
245 246 3.131223 TGCCAATTCGGTGAAAACTTGAA 59.869 39.130 0.00 0.00 36.97 2.69
246 247 2.690497 TGCCAATTCGGTGAAAACTTGA 59.310 40.909 0.00 0.00 36.97 3.02
247 248 3.090952 TGCCAATTCGGTGAAAACTTG 57.909 42.857 0.00 0.00 36.97 3.16
248 249 4.335400 AATGCCAATTCGGTGAAAACTT 57.665 36.364 0.00 0.00 36.97 2.66
249 250 4.335400 AAATGCCAATTCGGTGAAAACT 57.665 36.364 0.00 0.00 36.97 2.66
250 251 4.509600 TGAAAATGCCAATTCGGTGAAAAC 59.490 37.500 0.00 0.00 36.97 2.43
251 252 4.509600 GTGAAAATGCCAATTCGGTGAAAA 59.490 37.500 0.00 0.00 36.97 2.29
252 253 4.054671 GTGAAAATGCCAATTCGGTGAAA 58.945 39.130 0.00 0.00 36.97 2.69
253 254 3.320541 AGTGAAAATGCCAATTCGGTGAA 59.679 39.130 0.00 0.00 36.97 3.18
254 255 2.890311 AGTGAAAATGCCAATTCGGTGA 59.110 40.909 0.00 0.00 36.97 4.02
255 256 3.302365 AGTGAAAATGCCAATTCGGTG 57.698 42.857 0.00 0.00 36.97 4.94
256 257 3.320541 TCAAGTGAAAATGCCAATTCGGT 59.679 39.130 0.00 0.00 36.97 4.69
257 258 3.911868 TCAAGTGAAAATGCCAATTCGG 58.088 40.909 0.00 0.00 38.11 4.30
258 259 6.324819 AGTATCAAGTGAAAATGCCAATTCG 58.675 36.000 0.00 0.00 0.00 3.34
259 260 7.063780 CCAAGTATCAAGTGAAAATGCCAATTC 59.936 37.037 0.00 0.00 0.00 2.17
260 261 6.875195 CCAAGTATCAAGTGAAAATGCCAATT 59.125 34.615 0.00 0.00 0.00 2.32
261 262 6.400568 CCAAGTATCAAGTGAAAATGCCAAT 58.599 36.000 0.00 0.00 0.00 3.16
262 263 5.782047 CCAAGTATCAAGTGAAAATGCCAA 58.218 37.500 0.00 0.00 0.00 4.52
263 264 4.321899 GCCAAGTATCAAGTGAAAATGCCA 60.322 41.667 0.00 0.00 0.00 4.92
264 265 4.176271 GCCAAGTATCAAGTGAAAATGCC 58.824 43.478 0.00 0.00 0.00 4.40
265 266 4.176271 GGCCAAGTATCAAGTGAAAATGC 58.824 43.478 0.00 0.00 0.00 3.56
266 267 4.220382 TGGGCCAAGTATCAAGTGAAAATG 59.780 41.667 2.13 0.00 0.00 2.32
267 268 4.415596 TGGGCCAAGTATCAAGTGAAAAT 58.584 39.130 2.13 0.00 0.00 1.82
268 269 3.838565 TGGGCCAAGTATCAAGTGAAAA 58.161 40.909 2.13 0.00 0.00 2.29
269 270 3.517296 TGGGCCAAGTATCAAGTGAAA 57.483 42.857 2.13 0.00 0.00 2.69
270 271 3.737559 ATGGGCCAAGTATCAAGTGAA 57.262 42.857 11.89 0.00 0.00 3.18
271 272 5.387113 AATATGGGCCAAGTATCAAGTGA 57.613 39.130 11.89 0.00 0.00 3.41
272 273 6.469782 AAAATATGGGCCAAGTATCAAGTG 57.530 37.500 11.89 0.00 0.00 3.16
273 274 8.004215 TGATAAAATATGGGCCAAGTATCAAGT 58.996 33.333 11.89 0.00 0.00 3.16
274 275 8.299570 GTGATAAAATATGGGCCAAGTATCAAG 58.700 37.037 11.89 0.00 30.75 3.02
275 276 7.782168 TGTGATAAAATATGGGCCAAGTATCAA 59.218 33.333 11.89 7.80 30.75 2.57
276 277 7.293828 TGTGATAAAATATGGGCCAAGTATCA 58.706 34.615 11.89 15.56 0.00 2.15
277 278 7.759489 TGTGATAAAATATGGGCCAAGTATC 57.241 36.000 11.89 13.26 0.00 2.24
278 279 7.255942 GCTTGTGATAAAATATGGGCCAAGTAT 60.256 37.037 11.89 1.15 31.73 2.12
279 280 6.040391 GCTTGTGATAAAATATGGGCCAAGTA 59.960 38.462 11.89 0.00 31.73 2.24
280 281 5.163416 GCTTGTGATAAAATATGGGCCAAGT 60.163 40.000 11.89 0.00 31.73 3.16
281 282 5.291971 GCTTGTGATAAAATATGGGCCAAG 58.708 41.667 11.89 0.00 0.00 3.61
282 283 4.202101 CGCTTGTGATAAAATATGGGCCAA 60.202 41.667 11.89 0.00 0.00 4.52
283 284 3.317711 CGCTTGTGATAAAATATGGGCCA 59.682 43.478 9.61 9.61 0.00 5.36
284 285 3.305335 CCGCTTGTGATAAAATATGGGCC 60.305 47.826 0.00 0.00 0.00 5.80
285 286 3.568007 TCCGCTTGTGATAAAATATGGGC 59.432 43.478 0.00 0.00 0.00 5.36
286 287 5.063204 TCTCCGCTTGTGATAAAATATGGG 58.937 41.667 0.00 0.00 0.00 4.00
287 288 6.618287 TTCTCCGCTTGTGATAAAATATGG 57.382 37.500 0.00 0.00 0.00 2.74
343 344 9.598517 GGGCATCATTTATTTGAAGTAATTTCA 57.401 29.630 0.00 0.00 43.92 2.69
416 417 7.713750 TCTTAGGATTGTATTTCGGTCTACAG 58.286 38.462 0.00 0.00 0.00 2.74
418 419 8.937634 TTTCTTAGGATTGTATTTCGGTCTAC 57.062 34.615 0.00 0.00 0.00 2.59
517 518 8.138712 GGACTCATGTTCTATTATTCTCTTCGT 58.861 37.037 0.00 0.00 0.00 3.85
711 716 2.829003 TCTCTAGGCGTGGCGAGG 60.829 66.667 3.87 0.00 0.00 4.63
712 717 1.781025 CTCTCTCTAGGCGTGGCGAG 61.781 65.000 3.63 3.63 0.00 5.03
713 718 1.820056 CTCTCTCTAGGCGTGGCGA 60.820 63.158 0.00 0.00 0.00 5.54
714 719 1.377366 TTCTCTCTCTAGGCGTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
772 777 2.515991 CTCCTCGCTCGCCTCTCT 60.516 66.667 0.00 0.00 0.00 3.10
773 778 4.264638 GCTCCTCGCTCGCCTCTC 62.265 72.222 0.00 0.00 35.14 3.20
778 783 4.484258 AGTTCGCTCCTCGCTCGC 62.484 66.667 0.00 0.00 38.27 5.03
779 784 2.578178 CAGTTCGCTCCTCGCTCG 60.578 66.667 0.00 0.00 38.27 5.03
780 785 2.202676 CCAGTTCGCTCCTCGCTC 60.203 66.667 0.00 0.00 38.27 5.03
781 786 3.764466 CCCAGTTCGCTCCTCGCT 61.764 66.667 0.00 0.00 38.27 4.93
782 787 3.708220 CTCCCAGTTCGCTCCTCGC 62.708 68.421 0.00 0.00 38.27 5.03
783 788 1.999071 CTCTCCCAGTTCGCTCCTCG 61.999 65.000 0.00 0.00 40.15 4.63
784 789 1.813192 CTCTCCCAGTTCGCTCCTC 59.187 63.158 0.00 0.00 0.00 3.71
785 790 2.355193 GCTCTCCCAGTTCGCTCCT 61.355 63.158 0.00 0.00 0.00 3.69
786 791 2.185608 GCTCTCCCAGTTCGCTCC 59.814 66.667 0.00 0.00 0.00 4.70
787 792 2.202676 CGCTCTCCCAGTTCGCTC 60.203 66.667 0.00 0.00 0.00 5.03
788 793 2.676822 TCGCTCTCCCAGTTCGCT 60.677 61.111 0.00 0.00 0.00 4.93
789 794 2.202676 CTCGCTCTCCCAGTTCGC 60.203 66.667 0.00 0.00 0.00 4.70
823 842 1.609555 CCGATCAGACCTACAGCTACC 59.390 57.143 0.00 0.00 0.00 3.18
833 852 4.899239 CCGCCTGCCGATCAGACC 62.899 72.222 6.27 0.00 45.72 3.85
905 924 4.767255 CAGCGGCTGGTCCTGTCC 62.767 72.222 22.11 0.00 0.00 4.02
906 925 4.008933 ACAGCGGCTGGTCCTGTC 62.009 66.667 31.38 0.00 34.99 3.51
907 926 4.320456 CACAGCGGCTGGTCCTGT 62.320 66.667 31.38 9.64 40.22 4.00
908 927 3.947132 CTCACAGCGGCTGGTCCTG 62.947 68.421 31.38 20.82 35.51 3.86
909 928 3.699894 CTCACAGCGGCTGGTCCT 61.700 66.667 31.38 9.94 35.51 3.85
911 930 4.687215 TGCTCACAGCGGCTGGTC 62.687 66.667 31.38 17.66 46.26 4.02
912 931 4.254709 TTGCTCACAGCGGCTGGT 62.255 61.111 31.38 15.75 46.26 4.00
913 932 3.730761 GTTGCTCACAGCGGCTGG 61.731 66.667 31.38 20.58 46.26 4.85
914 933 2.667536 AGTTGCTCACAGCGGCTG 60.668 61.111 27.43 27.43 46.26 4.85
915 934 2.667536 CAGTTGCTCACAGCGGCT 60.668 61.111 0.00 0.00 46.26 5.52
916 935 3.730761 CCAGTTGCTCACAGCGGC 61.731 66.667 0.00 0.00 46.26 6.53
917 936 3.052082 CCCAGTTGCTCACAGCGG 61.052 66.667 0.00 0.00 46.26 5.52
918 937 3.730761 GCCCAGTTGCTCACAGCG 61.731 66.667 0.00 0.00 46.26 5.18
919 938 3.368571 GGCCCAGTTGCTCACAGC 61.369 66.667 0.00 0.00 42.82 4.40
920 939 1.228367 AAGGCCCAGTTGCTCACAG 60.228 57.895 0.00 0.00 0.00 3.66
984 1003 0.809385 CCATCCTGCTTCACTGCTTG 59.191 55.000 0.00 0.00 0.00 4.01
992 1011 2.287769 GCTCTTCTTCCATCCTGCTTC 58.712 52.381 0.00 0.00 0.00 3.86
1066 1085 1.542030 GAGACAGGAAGACGAAGAGCA 59.458 52.381 0.00 0.00 0.00 4.26
1074 1093 4.038642 ACTTGACAAGAGAGACAGGAAGAC 59.961 45.833 21.95 0.00 0.00 3.01
1082 1101 7.910441 AGTAGTACTACTTGACAAGAGAGAC 57.090 40.000 26.61 12.98 43.35 3.36
1101 1120 8.135529 GCAGAGTATTTTTCACCAAAAAGTAGT 58.864 33.333 0.00 0.00 43.22 2.73
1102 1121 8.352942 AGCAGAGTATTTTTCACCAAAAAGTAG 58.647 33.333 0.00 0.00 43.22 2.57
1119 1138 3.692257 AGCACACAAGAAGCAGAGTAT 57.308 42.857 0.00 0.00 0.00 2.12
1122 1141 2.216046 TCAAGCACACAAGAAGCAGAG 58.784 47.619 0.00 0.00 0.00 3.35
1123 1142 2.330440 TCAAGCACACAAGAAGCAGA 57.670 45.000 0.00 0.00 0.00 4.26
1124 1143 3.252701 AGATTCAAGCACACAAGAAGCAG 59.747 43.478 0.00 0.00 0.00 4.24
1156 1191 4.525912 AATGCTCAACACTGGATTTTCC 57.474 40.909 0.00 0.00 36.96 3.13
1164 1199 3.316029 TGACCAGAAAATGCTCAACACTG 59.684 43.478 0.00 0.00 0.00 3.66
1171 1206 6.869913 TGAATCAATTTGACCAGAAAATGCTC 59.130 34.615 0.15 0.00 0.00 4.26
1173 1208 7.293018 GTTGAATCAATTTGACCAGAAAATGC 58.707 34.615 0.15 0.00 0.00 3.56
1222 1260 3.680458 GTCAGCTGCTAGAGTACAAAACC 59.320 47.826 9.47 0.00 0.00 3.27
1228 1266 4.520874 TCCATATGTCAGCTGCTAGAGTAC 59.479 45.833 9.47 0.04 0.00 2.73
1230 1268 3.320541 GTCCATATGTCAGCTGCTAGAGT 59.679 47.826 9.47 0.00 0.00 3.24
1231 1269 3.320256 TGTCCATATGTCAGCTGCTAGAG 59.680 47.826 9.47 0.00 0.00 2.43
1232 1270 3.299503 TGTCCATATGTCAGCTGCTAGA 58.700 45.455 9.47 0.00 0.00 2.43
1233 1271 3.740631 TGTCCATATGTCAGCTGCTAG 57.259 47.619 9.47 0.00 0.00 3.42
1315 1353 9.712305 CCGGAAATACTTATCATCAAACTAGAT 57.288 33.333 0.00 0.00 0.00 1.98
1316 1354 8.920174 TCCGGAAATACTTATCATCAAACTAGA 58.080 33.333 0.00 0.00 0.00 2.43
1317 1355 8.979574 GTCCGGAAATACTTATCATCAAACTAG 58.020 37.037 5.23 0.00 0.00 2.57
1318 1356 7.650504 CGTCCGGAAATACTTATCATCAAACTA 59.349 37.037 5.23 0.00 0.00 2.24
1319 1357 6.479001 CGTCCGGAAATACTTATCATCAAACT 59.521 38.462 5.23 0.00 0.00 2.66
1320 1358 6.292703 CCGTCCGGAAATACTTATCATCAAAC 60.293 42.308 5.23 0.00 37.50 2.93
1321 1359 5.756347 CCGTCCGGAAATACTTATCATCAAA 59.244 40.000 5.23 0.00 37.50 2.69
1322 1360 5.069383 TCCGTCCGGAAATACTTATCATCAA 59.931 40.000 5.23 0.00 42.05 2.57
1323 1361 4.585581 TCCGTCCGGAAATACTTATCATCA 59.414 41.667 5.23 0.00 42.05 3.07
1324 1362 5.130292 TCCGTCCGGAAATACTTATCATC 57.870 43.478 5.23 0.00 42.05 2.92
1325 1363 4.021368 CCTCCGTCCGGAAATACTTATCAT 60.021 45.833 5.23 0.00 44.66 2.45
1326 1364 3.319972 CCTCCGTCCGGAAATACTTATCA 59.680 47.826 5.23 0.00 44.66 2.15
1327 1365 3.305881 CCCTCCGTCCGGAAATACTTATC 60.306 52.174 5.23 0.00 44.66 1.75
1328 1366 2.631545 CCCTCCGTCCGGAAATACTTAT 59.368 50.000 5.23 0.00 44.66 1.73
1329 1367 2.034124 CCCTCCGTCCGGAAATACTTA 58.966 52.381 5.23 0.00 44.66 2.24
1330 1368 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1331 1369 1.047034 CCCCTCCGTCCGGAAATACT 61.047 60.000 5.23 0.00 44.66 2.12
1332 1370 1.332889 ACCCCTCCGTCCGGAAATAC 61.333 60.000 5.23 0.00 44.66 1.89
1333 1371 0.261402 TACCCCTCCGTCCGGAAATA 59.739 55.000 5.23 0.00 44.66 1.40
1334 1372 1.002017 TACCCCTCCGTCCGGAAAT 59.998 57.895 5.23 0.00 44.66 2.17
1335 1373 1.683365 CTACCCCTCCGTCCGGAAA 60.683 63.158 5.23 0.00 44.66 3.13
1336 1374 2.043652 CTACCCCTCCGTCCGGAA 60.044 66.667 5.23 0.00 44.66 4.30
1337 1375 2.922704 AACTACCCCTCCGTCCGGA 61.923 63.158 0.00 0.00 42.90 5.14
1338 1376 2.363406 AACTACCCCTCCGTCCGG 60.363 66.667 0.00 0.00 0.00 5.14
1339 1377 1.538687 AACAACTACCCCTCCGTCCG 61.539 60.000 0.00 0.00 0.00 4.79
1340 1378 1.479730 CTAACAACTACCCCTCCGTCC 59.520 57.143 0.00 0.00 0.00 4.79
1341 1379 1.134877 GCTAACAACTACCCCTCCGTC 60.135 57.143 0.00 0.00 0.00 4.79
1342 1380 0.900421 GCTAACAACTACCCCTCCGT 59.100 55.000 0.00 0.00 0.00 4.69
1343 1381 0.177373 GGCTAACAACTACCCCTCCG 59.823 60.000 0.00 0.00 0.00 4.63
1344 1382 1.282382 TGGCTAACAACTACCCCTCC 58.718 55.000 0.00 0.00 0.00 4.30
1345 1383 3.646736 AATGGCTAACAACTACCCCTC 57.353 47.619 0.00 0.00 0.00 4.30
1346 1384 4.163649 GTCTAATGGCTAACAACTACCCCT 59.836 45.833 0.00 0.00 0.00 4.79
1347 1385 4.163649 AGTCTAATGGCTAACAACTACCCC 59.836 45.833 0.00 0.00 0.00 4.95
1348 1386 5.354842 AGTCTAATGGCTAACAACTACCC 57.645 43.478 0.00 0.00 0.00 3.69
1349 1387 5.358090 GGAGTCTAATGGCTAACAACTACC 58.642 45.833 0.00 0.00 0.00 3.18
1354 1392 3.370527 GCAGGGAGTCTAATGGCTAACAA 60.371 47.826 0.00 0.00 0.00 2.83
1391 1429 2.789213 TGGAACTTGGAATCGAATGCA 58.211 42.857 0.00 0.00 0.00 3.96
2054 2237 4.375272 AGGATTGATGATGCAGTTACTCG 58.625 43.478 0.00 0.00 0.00 4.18
2085 2930 0.240945 CCAGTCGTTGGTGGCAAATC 59.759 55.000 0.00 0.00 42.41 2.17
2113 2958 8.375493 ACAAAAGGACACCAGAATCTATACTA 57.625 34.615 0.00 0.00 0.00 1.82
2114 2959 7.259088 ACAAAAGGACACCAGAATCTATACT 57.741 36.000 0.00 0.00 0.00 2.12
2115 2960 6.255887 CGACAAAAGGACACCAGAATCTATAC 59.744 42.308 0.00 0.00 0.00 1.47
2260 3105 1.453745 GCCGCCCATGGATTTCAGA 60.454 57.895 15.22 0.00 0.00 3.27
2287 3132 1.064296 GACGATGAGCACGACGGAT 59.936 57.895 0.00 0.00 34.70 4.18
2345 3190 3.515502 CTCATGAGGTAGAGGTGGAACAA 59.484 47.826 15.38 0.00 44.16 2.83
2632 3486 3.006217 TCTCCATCTCGCTGTAATCCATG 59.994 47.826 0.00 0.00 0.00 3.66
2664 3518 0.796312 CTTGACGTGCACACCCATAC 59.204 55.000 18.64 0.21 0.00 2.39
2666 3520 1.600636 CCTTGACGTGCACACCCAT 60.601 57.895 18.64 0.00 0.00 4.00
2770 3624 1.521141 GGGGCTACGTTCTCCTTCC 59.479 63.158 0.00 0.00 0.00 3.46
2955 3812 2.257676 GCAACTCTGCTGCTTGCC 59.742 61.111 11.87 0.00 45.74 4.52
3004 3861 9.750125 AATTCTCCAAATGAAGTACAGAAAAAC 57.250 29.630 0.00 0.00 0.00 2.43
3030 3887 3.039011 GGGTGTTCTTAGAGATGCCCTA 58.961 50.000 0.00 0.00 31.42 3.53
3031 3888 1.840635 GGGTGTTCTTAGAGATGCCCT 59.159 52.381 0.00 0.00 31.42 5.19
3074 4273 2.026445 TGTTCCACCGTCACGTCG 59.974 61.111 0.00 0.00 0.00 5.12
3106 4305 1.004277 TGGGTGACAAGATTAGGTGCC 59.996 52.381 0.00 0.00 0.00 5.01
3107 4306 2.489938 TGGGTGACAAGATTAGGTGC 57.510 50.000 0.00 0.00 0.00 5.01
3142 4341 2.053865 CGCATGGAAGGGGCACATT 61.054 57.895 0.00 0.00 0.00 2.71
3143 4342 2.440796 CGCATGGAAGGGGCACAT 60.441 61.111 0.00 0.00 0.00 3.21
3144 4343 2.130821 TAACGCATGGAAGGGGCACA 62.131 55.000 0.00 0.00 31.93 4.57
3145 4344 1.377987 TAACGCATGGAAGGGGCAC 60.378 57.895 0.00 0.00 31.93 5.01
3146 4345 1.377987 GTAACGCATGGAAGGGGCA 60.378 57.895 0.00 0.00 31.93 5.36
3147 4346 0.963355 TTGTAACGCATGGAAGGGGC 60.963 55.000 0.00 0.00 31.93 5.80
3148 4347 1.762708 ATTGTAACGCATGGAAGGGG 58.237 50.000 0.00 0.00 36.29 4.79
3149 4348 3.804036 TCTATTGTAACGCATGGAAGGG 58.196 45.455 0.00 0.00 0.00 3.95
3150 4349 4.150627 CGATCTATTGTAACGCATGGAAGG 59.849 45.833 0.00 0.00 0.00 3.46
3151 4350 4.745125 ACGATCTATTGTAACGCATGGAAG 59.255 41.667 0.00 0.00 0.00 3.46
3152 4351 4.689071 ACGATCTATTGTAACGCATGGAA 58.311 39.130 0.00 0.00 0.00 3.53
3153 4352 4.316205 ACGATCTATTGTAACGCATGGA 57.684 40.909 0.00 0.00 0.00 3.41
3154 4353 5.403897 AAACGATCTATTGTAACGCATGG 57.596 39.130 0.00 0.00 0.00 3.66
3155 4354 5.901884 GGAAAACGATCTATTGTAACGCATG 59.098 40.000 0.00 0.00 0.00 4.06
3156 4355 5.815740 AGGAAAACGATCTATTGTAACGCAT 59.184 36.000 0.00 0.00 0.00 4.73
3157 4356 5.172934 AGGAAAACGATCTATTGTAACGCA 58.827 37.500 0.00 0.00 0.00 5.24
3393 4594 4.688879 TCTTTATTCAGCGTTGTCATCGTT 59.311 37.500 0.00 0.00 0.00 3.85
3476 4677 3.405831 CATCCTTGCTTGAACAGACTGA 58.594 45.455 10.08 0.00 0.00 3.41
3632 4833 0.179062 ATGCTCCGTCTTCCAGATGC 60.179 55.000 0.00 0.00 29.93 3.91
3666 4867 2.448194 ACCATATCTGCCATCCACCAAT 59.552 45.455 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.