Multiple sequence alignment - TraesCS3B01G219400
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G219400
chr3B
100.000
3171
0
0
1
3171
263786893
263790063
0.000000e+00
5856
1
TraesCS3B01G219400
chr3D
90.895
3240
132
39
43
3171
185067052
185070239
0.000000e+00
4198
2
TraesCS3B01G219400
chr3A
89.911
2914
136
38
350
3171
243869938
243872785
0.000000e+00
3607
3
TraesCS3B01G219400
chr3A
92.416
356
24
3
1
353
243867861
243868216
3.650000e-139
505
4
TraesCS3B01G219400
chr7D
79.275
193
32
6
28
217
449079275
449079088
9.230000e-26
128
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G219400
chr3B
263786893
263790063
3170
False
5856
5856
100.0000
1
3171
1
chr3B.!!$F1
3170
1
TraesCS3B01G219400
chr3D
185067052
185070239
3187
False
4198
4198
90.8950
43
3171
1
chr3D.!!$F1
3128
2
TraesCS3B01G219400
chr3A
243867861
243872785
4924
False
2056
3607
91.1635
1
3171
2
chr3A.!!$F1
3170
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
358
2087
0.327924
TACCTCGGGGTAAGTCGTCA
59.672
55.0
13.1
0.0
45.32
4.35
F
1132
2910
0.463654
CGGTAAGCTGCCCTTATGCA
60.464
55.0
0.0
0.0
38.25
3.96
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2104
3905
1.153469
CTTCCTCAGCCGCCTCTTC
60.153
63.158
0.0
0.0
0.0
2.87
R
2734
4579
0.029700
GGGGTGTACGTTGTTGTTGC
59.970
55.000
0.0
0.0
0.0
4.17
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
19
20
0.899019
TCGATCCAACGGAACATCCA
59.101
50.000
0.00
0.00
35.91
3.41
81
83
2.687935
GTGGCCTTCTGTTCTGTTTTGA
59.312
45.455
3.32
0.00
0.00
2.69
201
203
2.540101
GCGTCCATGATTTTACTCTCGG
59.460
50.000
0.00
0.00
0.00
4.63
202
204
3.737047
GCGTCCATGATTTTACTCTCGGA
60.737
47.826
0.00
0.00
0.00
4.55
203
205
3.797256
CGTCCATGATTTTACTCTCGGAC
59.203
47.826
0.00
0.00
35.53
4.79
204
206
4.440250
CGTCCATGATTTTACTCTCGGACT
60.440
45.833
0.00
0.00
36.15
3.85
205
207
5.044558
GTCCATGATTTTACTCTCGGACTC
58.955
45.833
0.00
0.00
35.77
3.36
211
215
4.602340
TTTTACTCTCGGACTCAAGCTT
57.398
40.909
0.00
0.00
0.00
3.74
264
268
5.949354
GCTCTACTAGTGGATCCATCTACAT
59.051
44.000
19.62
11.63
40.31
2.29
289
293
7.268212
AGAATGTGAATCCTATGCCATCTAT
57.732
36.000
0.00
0.00
0.00
1.98
298
302
6.968263
TCCTATGCCATCTATATGAGCTAC
57.032
41.667
0.00
0.00
34.84
3.58
326
330
9.678941
AGCTGCTAAACTAAATTTACAAGAAAC
57.321
29.630
0.00
0.00
0.00
2.78
358
2087
0.327924
TACCTCGGGGTAAGTCGTCA
59.672
55.000
13.10
0.00
45.32
4.35
397
2126
2.432628
GGAAGGAGTGGCACGACG
60.433
66.667
12.71
0.00
0.00
5.12
417
2146
1.129437
GAGATGGCGAGAAACAGTTGC
59.871
52.381
0.00
0.00
0.00
4.17
423
2152
2.966309
GAGAAACAGTTGCGGGGCG
61.966
63.158
0.00
0.00
0.00
6.13
506
2245
3.075148
GGCTAAAGAAAGTGTGTCTCCC
58.925
50.000
0.00
0.00
0.00
4.30
507
2246
3.496160
GGCTAAAGAAAGTGTGTCTCCCA
60.496
47.826
0.00
0.00
0.00
4.37
696
2451
3.951775
TTGGTCATATTTGTGCAACCC
57.048
42.857
0.00
0.00
34.36
4.11
794
2557
8.927721
TGTAAAATGAAATCAAATGCTGTGATG
58.072
29.630
0.00
0.00
35.87
3.07
850
2613
5.180492
TGGCTTTATGTTTTCTTACGTGAGG
59.820
40.000
7.57
0.00
0.00
3.86
851
2614
5.410439
GGCTTTATGTTTTCTTACGTGAGGA
59.590
40.000
7.57
0.00
0.00
3.71
852
2615
6.402226
GGCTTTATGTTTTCTTACGTGAGGAG
60.402
42.308
7.57
0.00
0.00
3.69
853
2616
6.476243
TTTATGTTTTCTTACGTGAGGAGC
57.524
37.500
7.57
0.17
0.00
4.70
854
2617
3.462483
TGTTTTCTTACGTGAGGAGCA
57.538
42.857
7.57
2.73
0.00
4.26
1100
2878
0.678366
TCCGCCGCCAACAATAATGT
60.678
50.000
0.00
0.00
43.14
2.71
1102
2880
0.588730
CGCCGCCAACAATAATGTCG
60.589
55.000
0.00
0.00
39.40
4.35
1125
2903
1.902556
TTACCTCGGTAAGCTGCCC
59.097
57.895
4.47
0.00
35.88
5.36
1132
2910
0.463654
CGGTAAGCTGCCCTTATGCA
60.464
55.000
0.00
0.00
38.25
3.96
1139
2917
1.547223
GCTGCCCTTATGCATCATCCT
60.547
52.381
0.19
0.00
41.16
3.24
1147
2925
0.679505
ATGCATCATCCTGCCATTGC
59.320
50.000
0.00
0.00
41.58
3.56
1164
2942
2.090524
GCCCCGTACGTTCGTTGAG
61.091
63.158
15.21
0.00
0.00
3.02
1180
2958
3.369052
CGTTGAGGTTCCATGGCTAAGTA
60.369
47.826
6.96
0.00
0.00
2.24
1181
2959
4.192317
GTTGAGGTTCCATGGCTAAGTAG
58.808
47.826
6.96
0.00
0.00
2.57
1182
2960
3.450904
TGAGGTTCCATGGCTAAGTAGT
58.549
45.455
6.96
0.00
0.00
2.73
1183
2961
4.616553
TGAGGTTCCATGGCTAAGTAGTA
58.383
43.478
6.96
0.00
0.00
1.82
1184
2962
4.404715
TGAGGTTCCATGGCTAAGTAGTAC
59.595
45.833
6.96
0.00
0.00
2.73
1185
2963
4.621769
AGGTTCCATGGCTAAGTAGTACT
58.378
43.478
6.96
0.00
0.00
2.73
1186
2964
4.406003
AGGTTCCATGGCTAAGTAGTACTG
59.594
45.833
6.96
0.00
0.00
2.74
1187
2965
4.161754
GGTTCCATGGCTAAGTAGTACTGT
59.838
45.833
6.96
0.00
0.00
3.55
1188
2966
5.361857
GGTTCCATGGCTAAGTAGTACTGTA
59.638
44.000
6.96
0.00
0.00
2.74
1189
2967
6.041751
GGTTCCATGGCTAAGTAGTACTGTAT
59.958
42.308
6.96
0.00
0.00
2.29
1190
2968
7.418712
GGTTCCATGGCTAAGTAGTACTGTATT
60.419
40.741
6.96
0.00
0.00
1.89
1191
2969
8.636213
GTTCCATGGCTAAGTAGTACTGTATTA
58.364
37.037
6.96
1.23
0.00
0.98
1192
2970
8.405418
TCCATGGCTAAGTAGTACTGTATTAG
57.595
38.462
6.96
11.49
0.00
1.73
1193
2971
8.003044
TCCATGGCTAAGTAGTACTGTATTAGT
58.997
37.037
6.96
1.23
43.56
2.24
1321
3099
0.463833
ATGGCTCGTCCGGGAATTTC
60.464
55.000
0.00
0.00
37.80
2.17
1322
3100
1.078708
GGCTCGTCCGGGAATTTCA
60.079
57.895
0.00
0.00
0.00
2.69
1323
3101
0.675522
GGCTCGTCCGGGAATTTCAA
60.676
55.000
0.00
0.00
0.00
2.69
1324
3102
1.379527
GCTCGTCCGGGAATTTCAAT
58.620
50.000
0.00
0.00
0.00
2.57
1325
3103
1.743394
GCTCGTCCGGGAATTTCAATT
59.257
47.619
0.00
0.00
0.00
2.32
1326
3104
2.163613
GCTCGTCCGGGAATTTCAATTT
59.836
45.455
0.00
0.00
0.00
1.82
1327
3105
3.730963
GCTCGTCCGGGAATTTCAATTTC
60.731
47.826
0.00
0.00
0.00
2.17
1376
3154
9.097257
GTTTCTTGGAAGAATGTTCATTTTTCA
57.903
29.630
21.55
11.35
43.92
2.69
1393
3171
7.609918
TCATTTTTCACTGCTAGCCTACATTTA
59.390
33.333
13.29
0.00
0.00
1.40
1394
3172
6.737254
TTTTCACTGCTAGCCTACATTTAC
57.263
37.500
13.29
0.00
0.00
2.01
1395
3173
5.677319
TTCACTGCTAGCCTACATTTACT
57.323
39.130
13.29
0.00
0.00
2.24
1405
3183
6.712179
AGCCTACATTTACTACTACCTCAC
57.288
41.667
0.00
0.00
0.00
3.51
1469
3269
2.092211
CGCTACGGACACTTGATGAAAC
59.908
50.000
0.00
0.00
0.00
2.78
1471
3271
2.930826
ACGGACACTTGATGAAACCT
57.069
45.000
0.00
0.00
0.00
3.50
1520
3320
1.605712
GCAGGTTGCTACAGACGAGTT
60.606
52.381
0.00
0.00
40.96
3.01
1641
3441
1.688197
TGTGACACACATGAGCTCAGA
59.312
47.619
22.96
0.00
39.62
3.27
1707
3507
8.268850
TCTTTTCTGTAGCAATTCCATCTAAC
57.731
34.615
0.00
0.00
0.00
2.34
1769
3569
4.681483
ACATATGCTACGAATCATGTGACG
59.319
41.667
1.58
0.00
35.99
4.35
1891
3692
3.626924
AAGACCGGCGCCTCAGTT
61.627
61.111
26.68
10.06
0.00
3.16
1999
3800
2.564721
GCCAAAACCAGCGGCTTCT
61.565
57.895
0.00
0.00
42.78
2.85
2084
3885
1.002868
GCCAAGAAGCTGAGGCAGA
60.003
57.895
12.49
0.00
46.26
4.26
2185
3986
0.324614
TCTGACCGGCACATGATGTT
59.675
50.000
0.00
0.00
0.00
2.71
2186
3987
1.552792
TCTGACCGGCACATGATGTTA
59.447
47.619
0.00
0.00
0.00
2.41
2187
3988
2.027653
TCTGACCGGCACATGATGTTAA
60.028
45.455
0.00
0.00
0.00
2.01
2190
3991
1.466950
ACCGGCACATGATGTTAAACG
59.533
47.619
0.00
0.00
0.00
3.60
2198
3999
2.851263
TGATGTTAAACGGCTGGTCT
57.149
45.000
0.00
0.00
0.00
3.85
2199
4000
3.134574
TGATGTTAAACGGCTGGTCTT
57.865
42.857
0.00
0.00
0.00
3.01
2207
4021
2.180432
ACGGCTGGTCTTTAAACCTC
57.820
50.000
0.00
0.00
40.20
3.85
2237
4051
3.063997
CGTTCCTCTAATGCATTGGTGTC
59.936
47.826
22.27
10.76
0.00
3.67
2286
4100
9.093970
TGTTCTGAAACACATAATCGGTTATAG
57.906
33.333
0.00
0.00
40.45
1.31
2291
4105
6.844696
AACACATAATCGGTTATAGTGCAG
57.155
37.500
21.01
5.63
35.30
4.41
2296
4110
8.273557
CACATAATCGGTTATAGTGCAGTTAAC
58.726
37.037
14.03
8.45
30.34
2.01
2298
4112
9.687210
CATAATCGGTTATAGTGCAGTTAACTA
57.313
33.333
8.04
5.40
34.73
2.24
2343
4157
1.634757
TTTGCGTGTCCATAGCAGCG
61.635
55.000
0.00
0.00
42.19
5.18
2356
4170
0.679002
AGCAGCGGATTGATGTGCTT
60.679
50.000
0.00
0.00
41.72
3.91
2360
4174
3.673052
GCAGCGGATTGATGTGCTTTTAA
60.673
43.478
0.00
0.00
36.02
1.52
2362
4176
3.119495
AGCGGATTGATGTGCTTTTAACC
60.119
43.478
0.00
0.00
32.89
2.85
2363
4177
3.366883
GCGGATTGATGTGCTTTTAACCA
60.367
43.478
0.00
0.00
0.00
3.67
2364
4178
4.804108
CGGATTGATGTGCTTTTAACCAA
58.196
39.130
0.00
0.00
0.00
3.67
2365
4179
5.410067
CGGATTGATGTGCTTTTAACCAAT
58.590
37.500
0.00
0.00
0.00
3.16
2366
4180
5.868801
CGGATTGATGTGCTTTTAACCAATT
59.131
36.000
0.00
0.00
0.00
2.32
2401
4215
2.555199
ACAACTGTCTGTCTGAAGCAC
58.445
47.619
0.00
0.00
0.00
4.40
2511
4347
3.665745
ATGCAGTGGCTTAAAACTTGG
57.334
42.857
0.00
0.00
41.91
3.61
2607
4443
1.865865
TTCAGACGAGTTTCCACTGC
58.134
50.000
0.00
0.00
31.22
4.40
2732
4577
5.125417
TCAAGGAAGGAACAACAAGAACAAG
59.875
40.000
0.00
0.00
0.00
3.16
2734
4579
4.884164
AGGAAGGAACAACAAGAACAAGAG
59.116
41.667
0.00
0.00
0.00
2.85
2744
4589
4.485163
ACAAGAACAAGAGCAACAACAAC
58.515
39.130
0.00
0.00
0.00
3.32
2749
4594
3.004171
ACAAGAGCAACAACAACGTACA
58.996
40.909
0.00
0.00
0.00
2.90
2783
4628
9.915629
AAACTCTTTACAGTCATCTACTACTTG
57.084
33.333
0.00
0.00
35.76
3.16
2851
4696
8.084684
TCTATAACATTCATCGTCTGGATCTTG
58.915
37.037
0.00
0.00
31.28
3.02
2983
4835
1.218230
GCAGGCGGAATAGCGAGAAG
61.218
60.000
0.00
0.00
38.18
2.85
3056
4909
6.260936
CACTTGACACTCTTAAACCTCACATT
59.739
38.462
0.00
0.00
0.00
2.71
3058
4911
5.305585
TGACACTCTTAAACCTCACATTCC
58.694
41.667
0.00
0.00
0.00
3.01
3059
4912
5.071788
TGACACTCTTAAACCTCACATTCCT
59.928
40.000
0.00
0.00
0.00
3.36
3060
4913
5.552178
ACACTCTTAAACCTCACATTCCTC
58.448
41.667
0.00
0.00
0.00
3.71
3061
4914
4.938226
CACTCTTAAACCTCACATTCCTCC
59.062
45.833
0.00
0.00
0.00
4.30
3062
4915
4.019231
ACTCTTAAACCTCACATTCCTCCC
60.019
45.833
0.00
0.00
0.00
4.30
3063
4916
4.175962
TCTTAAACCTCACATTCCTCCCT
58.824
43.478
0.00
0.00
0.00
4.20
3064
4917
4.601857
TCTTAAACCTCACATTCCTCCCTT
59.398
41.667
0.00
0.00
0.00
3.95
3065
4918
2.887151
AACCTCACATTCCTCCCTTG
57.113
50.000
0.00
0.00
0.00
3.61
3066
4919
1.747444
ACCTCACATTCCTCCCTTGT
58.253
50.000
0.00
0.00
0.00
3.16
3067
4920
2.915869
ACCTCACATTCCTCCCTTGTA
58.084
47.619
0.00
0.00
0.00
2.41
3068
4921
2.572104
ACCTCACATTCCTCCCTTGTAC
59.428
50.000
0.00
0.00
0.00
2.90
3069
4922
2.840651
CCTCACATTCCTCCCTTGTACT
59.159
50.000
0.00
0.00
0.00
2.73
3070
4923
3.264450
CCTCACATTCCTCCCTTGTACTT
59.736
47.826
0.00
0.00
0.00
2.24
3071
4924
4.263506
CCTCACATTCCTCCCTTGTACTTT
60.264
45.833
0.00
0.00
0.00
2.66
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
7
8
2.556622
GTTGTTCCATGGATGTTCCGTT
59.443
45.455
17.06
0.00
40.17
4.44
19
20
2.158667
ACTTTCTGTCGGGTTGTTCCAT
60.159
45.455
0.00
0.00
38.11
3.41
47
49
1.078848
GGCCACGAGAAGCTCATGT
60.079
57.895
0.00
0.00
0.00
3.21
81
83
1.196808
GTTGGTCGTGCGACATTTCAT
59.803
47.619
23.33
0.00
46.20
2.57
201
203
5.356190
TCATCATTGGATTCAAGCTTGAGTC
59.644
40.000
32.77
32.77
41.53
3.36
202
204
5.258841
TCATCATTGGATTCAAGCTTGAGT
58.741
37.500
27.02
25.01
38.61
3.41
203
205
5.830000
TCATCATTGGATTCAAGCTTGAG
57.170
39.130
27.02
14.99
38.61
3.02
204
206
6.785337
ATTCATCATTGGATTCAAGCTTGA
57.215
33.333
25.16
25.16
36.19
3.02
205
207
6.816640
ACAATTCATCATTGGATTCAAGCTTG
59.183
34.615
20.81
20.81
46.06
4.01
211
215
6.854091
TTGGACAATTCATCATTGGATTCA
57.146
33.333
0.00
0.00
46.06
2.57
264
268
6.692849
AGATGGCATAGGATTCACATTCTA
57.307
37.500
0.00
0.00
0.00
2.10
298
302
7.739295
TCTTGTAAATTTAGTTTAGCAGCTCG
58.261
34.615
0.00
0.00
33.11
5.03
326
330
0.921347
CGAGGTAGATTTCGCCAACG
59.079
55.000
0.00
0.00
42.01
4.10
358
2087
1.673033
CCGCTCGATCTCAAGGTGTTT
60.673
52.381
0.00
0.00
0.00
2.83
397
2126
1.129437
GCAACTGTTTCTCGCCATCTC
59.871
52.381
0.00
0.00
0.00
2.75
417
2146
1.525995
ATACTTCATTGCCGCCCCG
60.526
57.895
0.00
0.00
0.00
5.73
423
2152
2.952310
GGACTTCCCATACTTCATTGCC
59.048
50.000
0.00
0.00
34.14
4.52
427
2156
3.736094
TCCTGGACTTCCCATACTTCAT
58.264
45.455
0.00
0.00
45.57
2.57
428
2157
3.199442
TCCTGGACTTCCCATACTTCA
57.801
47.619
0.00
0.00
45.57
3.02
506
2245
6.817765
AGTATTGGTACCACAGACATTTTG
57.182
37.500
16.04
0.00
0.00
2.44
507
2246
7.214467
CAAGTATTGGTACCACAGACATTTT
57.786
36.000
16.04
1.10
43.94
1.82
681
2436
4.244862
GGTTTCTGGGTTGCACAAATATG
58.755
43.478
0.00
0.00
0.00
1.78
696
2451
6.924111
ACATGCTATTGTTTTAGGGTTTCTG
58.076
36.000
0.00
0.00
0.00
3.02
762
2525
8.316214
AGCATTTGATTTCATTTTACAGTGGAT
58.684
29.630
0.00
0.00
0.00
3.41
811
2574
7.651808
ACATAAAGCCACAGCATTTCATATAC
58.348
34.615
0.00
0.00
43.56
1.47
828
2591
6.476243
TCCTCACGTAAGAAAACATAAAGC
57.524
37.500
0.00
0.00
43.62
3.51
829
2592
6.147164
TGCTCCTCACGTAAGAAAACATAAAG
59.853
38.462
0.00
0.00
43.62
1.85
833
2596
3.997021
CTGCTCCTCACGTAAGAAAACAT
59.003
43.478
0.00
0.00
43.62
2.71
852
2615
0.394080
AAAGGGCTGAGATGCTCTGC
60.394
55.000
15.25
15.25
43.99
4.26
853
2616
2.015587
GAAAAGGGCTGAGATGCTCTG
58.984
52.381
0.00
0.00
43.99
3.35
944
2707
1.302832
GAACACCACCTCTGCTGGG
60.303
63.158
0.00
0.00
32.45
4.45
1084
2847
3.234368
CGACATTATTGTTGGCGGC
57.766
52.632
0.00
0.00
41.91
6.53
1091
2854
4.441079
CGAGGTAAGGGACGACATTATTGT
60.441
45.833
0.00
0.00
39.32
2.71
1100
2878
3.976704
TTACCGAGGTAAGGGACGA
57.023
52.632
10.43
0.00
35.88
4.20
1132
2910
1.152398
GGGGCAATGGCAGGATGAT
60.152
57.895
9.51
0.00
43.71
2.45
1139
2917
3.554696
AACGTACGGGGCAATGGCA
62.555
57.895
21.06
0.00
43.71
4.92
1147
2925
1.444895
CCTCAACGAACGTACGGGG
60.445
63.158
21.06
10.40
37.61
5.73
1164
2942
4.161754
ACAGTACTACTTAGCCATGGAACC
59.838
45.833
18.40
0.00
0.00
3.62
1182
2960
7.224765
TCCCCCAGTAAGTACTAATACAGTA
57.775
40.000
0.00
0.00
38.80
2.74
1183
2961
6.096164
TCCCCCAGTAAGTACTAATACAGT
57.904
41.667
0.00
0.00
41.62
3.55
1184
2962
6.210984
GGATCCCCCAGTAAGTACTAATACAG
59.789
46.154
0.00
0.00
34.13
2.74
1185
2963
6.080009
GGATCCCCCAGTAAGTACTAATACA
58.920
44.000
0.00
0.00
34.13
2.29
1186
2964
6.602410
GGATCCCCCAGTAAGTACTAATAC
57.398
45.833
0.00
0.00
34.13
1.89
1218
2996
2.979006
CGATTTCGTCATCGGACTTG
57.021
50.000
10.08
0.00
42.03
3.16
1321
3099
6.698329
TGCAGACAGATTGTTTGAAGAAATTG
59.302
34.615
4.16
0.00
34.75
2.32
1322
3100
6.698766
GTGCAGACAGATTGTTTGAAGAAATT
59.301
34.615
4.16
0.00
34.75
1.82
1323
3101
6.211515
GTGCAGACAGATTGTTTGAAGAAAT
58.788
36.000
4.16
0.00
34.75
2.17
1324
3102
5.450412
GGTGCAGACAGATTGTTTGAAGAAA
60.450
40.000
4.16
0.00
34.75
2.52
1325
3103
4.036734
GGTGCAGACAGATTGTTTGAAGAA
59.963
41.667
4.16
0.00
34.75
2.52
1326
3104
3.565482
GGTGCAGACAGATTGTTTGAAGA
59.435
43.478
4.16
0.00
34.75
2.87
1327
3105
3.316029
TGGTGCAGACAGATTGTTTGAAG
59.684
43.478
4.16
0.00
34.75
3.02
1376
3154
6.264970
GGTAGTAGTAAATGTAGGCTAGCAGT
59.735
42.308
18.24
5.49
0.00
4.40
1469
3269
2.325082
GCCACGGTGTGCTTACAGG
61.325
63.158
7.45
0.00
31.34
4.00
1471
3271
1.596752
CTGCCACGGTGTGCTTACA
60.597
57.895
18.07
3.26
31.34
2.41
1628
3428
4.395231
ACATTGACATTCTGAGCTCATGTG
59.605
41.667
22.76
19.55
31.10
3.21
1641
3441
7.361201
GCTTACACTGATGTACACATTGACATT
60.361
37.037
16.73
3.91
41.12
2.71
1717
3517
7.029563
GTGCAGTAGCTAAATTTATTGTGCTT
58.970
34.615
13.09
0.00
42.74
3.91
1769
3569
7.081526
ACATTGAAATTCTGAGCTCATGTAC
57.918
36.000
18.63
7.72
0.00
2.90
1891
3692
2.877097
TGGCAAGAGAAACATGGCTA
57.123
45.000
0.00
0.00
42.00
3.93
1999
3800
1.660355
GAGCGGCATGTCCTCGATA
59.340
57.895
1.45
0.00
0.00
2.92
2104
3905
1.153469
CTTCCTCAGCCGCCTCTTC
60.153
63.158
0.00
0.00
0.00
2.87
2185
3986
4.067192
GAGGTTTAAAGACCAGCCGTTTA
58.933
43.478
0.00
0.00
42.35
2.01
2186
3987
2.882761
GAGGTTTAAAGACCAGCCGTTT
59.117
45.455
0.00
0.00
42.35
3.60
2187
3988
2.501261
GAGGTTTAAAGACCAGCCGTT
58.499
47.619
0.00
0.00
42.35
4.44
2190
3991
1.271217
ACGGAGGTTTAAAGACCAGCC
60.271
52.381
0.00
0.00
42.35
4.85
2237
4051
8.250538
ACAGAAAAATTGTACAAACCAAACAG
57.749
30.769
13.23
2.70
0.00
3.16
2302
4116
9.213799
GCAAAAAGGTTTCATTTCATTATGGTA
57.786
29.630
0.00
0.00
0.00
3.25
2303
4117
7.095271
CGCAAAAAGGTTTCATTTCATTATGGT
60.095
33.333
0.00
0.00
0.00
3.55
2305
4119
7.741216
CACGCAAAAAGGTTTCATTTCATTATG
59.259
33.333
0.00
0.00
0.00
1.90
2306
4120
7.440856
ACACGCAAAAAGGTTTCATTTCATTAT
59.559
29.630
0.00
0.00
0.00
1.28
2307
4121
6.758886
ACACGCAAAAAGGTTTCATTTCATTA
59.241
30.769
0.00
0.00
0.00
1.90
2308
4122
5.584251
ACACGCAAAAAGGTTTCATTTCATT
59.416
32.000
0.00
0.00
0.00
2.57
2309
4123
5.115480
ACACGCAAAAAGGTTTCATTTCAT
58.885
33.333
0.00
0.00
0.00
2.57
2310
4124
4.499183
ACACGCAAAAAGGTTTCATTTCA
58.501
34.783
0.00
0.00
0.00
2.69
2311
4125
4.026062
GGACACGCAAAAAGGTTTCATTTC
60.026
41.667
0.00
0.00
0.00
2.17
2312
4126
3.868661
GGACACGCAAAAAGGTTTCATTT
59.131
39.130
0.00
0.00
0.00
2.32
2343
4157
7.671495
AAATTGGTTAAAAGCACATCAATCC
57.329
32.000
0.00
0.00
35.94
3.01
2360
4174
9.569122
AGTTGTACAACATAGACTAAAATTGGT
57.431
29.630
33.93
9.86
43.47
3.67
2364
4178
9.998106
AGACAGTTGTACAACATAGACTAAAAT
57.002
29.630
33.93
11.39
43.47
1.82
2365
4179
9.256477
CAGACAGTTGTACAACATAGACTAAAA
57.744
33.333
33.93
0.00
43.47
1.52
2366
4180
8.418662
ACAGACAGTTGTACAACATAGACTAAA
58.581
33.333
33.93
0.00
43.47
1.85
2401
4215
7.707774
ATTTTACAGAAAACATCCCAAAACG
57.292
32.000
0.00
0.00
37.37
3.60
2442
4278
5.240891
ACTAGTCGGCATTCCAATATCATG
58.759
41.667
0.00
0.00
0.00
3.07
2446
4282
3.904339
AGGACTAGTCGGCATTCCAATAT
59.096
43.478
16.56
0.00
0.00
1.28
2511
4347
3.120304
CGAAAAAGGACCGATGTTCCTTC
60.120
47.826
4.14
0.00
42.47
3.46
2732
4577
1.003223
GGGTGTACGTTGTTGTTGCTC
60.003
52.381
0.00
0.00
0.00
4.26
2734
4579
0.029700
GGGGTGTACGTTGTTGTTGC
59.970
55.000
0.00
0.00
0.00
4.17
2744
4589
0.974383
AGAGTTTGAGGGGGTGTACG
59.026
55.000
0.00
0.00
0.00
3.67
2749
4594
3.053826
ACTGTAAAGAGTTTGAGGGGGT
58.946
45.455
0.00
0.00
0.00
4.95
2826
4671
7.330454
CCAAGATCCAGACGATGAATGTTATAG
59.670
40.741
0.00
0.00
0.00
1.31
2983
4835
0.248743
CATGACAATGCCGCATCCAC
60.249
55.000
6.27
1.87
0.00
4.02
3056
4909
2.113777
AGGGAGAAAGTACAAGGGAGGA
59.886
50.000
0.00
0.00
0.00
3.71
3058
4911
4.327680
CAAAGGGAGAAAGTACAAGGGAG
58.672
47.826
0.00
0.00
0.00
4.30
3059
4912
3.497942
GCAAAGGGAGAAAGTACAAGGGA
60.498
47.826
0.00
0.00
0.00
4.20
3060
4913
2.820197
GCAAAGGGAGAAAGTACAAGGG
59.180
50.000
0.00
0.00
0.00
3.95
3061
4914
3.753797
GAGCAAAGGGAGAAAGTACAAGG
59.246
47.826
0.00
0.00
0.00
3.61
3062
4915
3.753797
GGAGCAAAGGGAGAAAGTACAAG
59.246
47.826
0.00
0.00
0.00
3.16
3063
4916
3.497942
GGGAGCAAAGGGAGAAAGTACAA
60.498
47.826
0.00
0.00
0.00
2.41
3064
4917
2.039879
GGGAGCAAAGGGAGAAAGTACA
59.960
50.000
0.00
0.00
0.00
2.90
3065
4918
2.618302
GGGGAGCAAAGGGAGAAAGTAC
60.618
54.545
0.00
0.00
0.00
2.73
3066
4919
1.633945
GGGGAGCAAAGGGAGAAAGTA
59.366
52.381
0.00
0.00
0.00
2.24
3067
4920
0.405973
GGGGAGCAAAGGGAGAAAGT
59.594
55.000
0.00
0.00
0.00
2.66
3068
4921
0.405585
TGGGGAGCAAAGGGAGAAAG
59.594
55.000
0.00
0.00
0.00
2.62
3069
4922
0.112412
GTGGGGAGCAAAGGGAGAAA
59.888
55.000
0.00
0.00
0.00
2.52
3070
4923
1.767692
GTGGGGAGCAAAGGGAGAA
59.232
57.895
0.00
0.00
0.00
2.87
3071
4924
2.231380
GGTGGGGAGCAAAGGGAGA
61.231
63.158
0.00
0.00
0.00
3.71
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.