Multiple sequence alignment - TraesCS3B01G218800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G218800 chr3B 100.000 8340 0 0 1 8340 262205182 262196843 0.000000e+00 15402.0
1 TraesCS3B01G218800 chr3B 93.151 146 9 1 3364 3508 276481755 276481900 6.560000e-51 213.0
2 TraesCS3B01G218800 chr3D 96.521 5807 100 27 888 6637 183749998 183744237 0.000000e+00 9511.0
3 TraesCS3B01G218800 chr3D 95.836 1537 48 7 6640 8169 183744184 183742657 0.000000e+00 2470.0
4 TraesCS3B01G218800 chr3D 87.179 702 77 7 1 690 535551749 535552449 0.000000e+00 785.0
5 TraesCS3B01G218800 chr3D 85.914 717 73 20 1 697 569841638 569842346 0.000000e+00 739.0
6 TraesCS3B01G218800 chr3D 95.614 114 4 1 8227 8340 183742530 183742418 1.850000e-41 182.0
7 TraesCS3B01G218800 chr3D 97.917 96 2 0 8131 8226 183742659 183742564 5.180000e-37 167.0
8 TraesCS3B01G218800 chr3A 97.904 2338 44 3 907 3243 234224425 234222092 0.000000e+00 4041.0
9 TraesCS3B01G218800 chr3A 97.129 1602 37 7 5047 6642 234217598 234216000 0.000000e+00 2695.0
10 TraesCS3B01G218800 chr3A 95.723 1590 52 5 6640 8226 234215952 234214376 0.000000e+00 2545.0
11 TraesCS3B01G218800 chr3A 98.642 810 11 0 4231 5040 234218646 234217837 0.000000e+00 1435.0
12 TraesCS3B01G218800 chr3A 91.720 157 13 0 3364 3520 267045062 267044906 1.410000e-52 219.0
13 TraesCS3B01G218800 chr3A 91.772 158 10 2 3364 3521 675873174 675873020 5.070000e-52 217.0
14 TraesCS3B01G218800 chr3A 96.396 111 3 1 8230 8340 234214339 234214230 1.850000e-41 182.0
15 TraesCS3B01G218800 chr3A 100.000 28 0 0 888 915 234224634 234224607 1.500000e-02 52.8
16 TraesCS3B01G218800 chr1B 86.299 708 77 14 1 690 640568452 640567747 0.000000e+00 752.0
17 TraesCS3B01G218800 chr1B 87.261 628 74 5 1 625 618186587 618187211 0.000000e+00 712.0
18 TraesCS3B01G218800 chr5D 86.475 695 80 13 1 688 527721746 527722433 0.000000e+00 750.0
19 TraesCS3B01G218800 chr5D 86.037 709 77 15 1 690 515100630 515101335 0.000000e+00 741.0
20 TraesCS3B01G218800 chr5D 94.304 158 9 0 3364 3521 399614528 399614685 8.360000e-60 243.0
21 TraesCS3B01G218800 chr7D 86.017 708 76 15 1 690 581268974 581269676 0.000000e+00 737.0
22 TraesCS3B01G218800 chr4A 86.060 703 77 13 7 690 641514909 641514209 0.000000e+00 736.0
23 TraesCS3B01G218800 chr4A 97.222 36 1 0 4157 4192 25026411 25026446 2.510000e-05 62.1
24 TraesCS3B01G218800 chr4A 94.872 39 2 0 4157 4195 56270136 56270098 2.510000e-05 62.1
25 TraesCS3B01G218800 chr4B 85.431 707 84 11 1 690 629712368 629713072 0.000000e+00 717.0
26 TraesCS3B01G218800 chr4B 86.695 233 20 4 466 687 402098305 402098537 1.800000e-61 248.0
27 TraesCS3B01G218800 chr4B 94.872 39 2 0 4157 4195 669693854 669693816 2.510000e-05 62.1
28 TraesCS3B01G218800 chr6B 85.449 701 83 11 7 690 55687483 55686785 0.000000e+00 712.0
29 TraesCS3B01G218800 chr6B 79.916 239 28 11 469 690 55691814 55691579 3.120000e-34 158.0
30 TraesCS3B01G218800 chr6B 92.537 67 4 1 3944 4009 446845468 446845402 2.480000e-15 95.3
31 TraesCS3B01G218800 chr5B 94.304 158 9 0 3364 3521 479726841 479726998 8.360000e-60 243.0
32 TraesCS3B01G218800 chr6A 91.824 159 10 2 3364 3522 47466796 47466951 1.410000e-52 219.0
33 TraesCS3B01G218800 chr2D 91.026 156 14 0 3366 3521 122866867 122866712 2.360000e-50 211.0
34 TraesCS3B01G218800 chr6D 91.139 158 8 3 3361 3518 346453900 346454051 8.480000e-50 209.0
35 TraesCS3B01G218800 chr6D 89.552 67 6 1 3944 4009 285879148 285879082 5.360000e-12 84.2
36 TraesCS3B01G218800 chr2B 95.238 42 2 0 4154 4195 104254201 104254160 5.400000e-07 67.6
37 TraesCS3B01G218800 chr1D 91.667 48 4 0 4148 4195 418242518 418242471 5.400000e-07 67.6
38 TraesCS3B01G218800 chr7B 93.023 43 3 0 4149 4191 482484943 482484985 6.990000e-06 63.9
39 TraesCS3B01G218800 chr7A 94.872 39 2 0 4157 4195 190473065 190473027 2.510000e-05 62.1
40 TraesCS3B01G218800 chr1A 92.683 41 3 0 4152 4192 558255380 558255420 9.040000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G218800 chr3B 262196843 262205182 8339 True 15402.000000 15402 100.000000 1 8340 1 chr3B.!!$R1 8339
1 TraesCS3B01G218800 chr3D 183742418 183749998 7580 True 3082.500000 9511 96.472000 888 8340 4 chr3D.!!$R1 7452
2 TraesCS3B01G218800 chr3D 535551749 535552449 700 False 785.000000 785 87.179000 1 690 1 chr3D.!!$F1 689
3 TraesCS3B01G218800 chr3D 569841638 569842346 708 False 739.000000 739 85.914000 1 697 1 chr3D.!!$F2 696
4 TraesCS3B01G218800 chr3A 234214230 234224634 10404 True 1825.133333 4041 97.632333 888 8340 6 chr3A.!!$R3 7452
5 TraesCS3B01G218800 chr1B 640567747 640568452 705 True 752.000000 752 86.299000 1 690 1 chr1B.!!$R1 689
6 TraesCS3B01G218800 chr1B 618186587 618187211 624 False 712.000000 712 87.261000 1 625 1 chr1B.!!$F1 624
7 TraesCS3B01G218800 chr5D 527721746 527722433 687 False 750.000000 750 86.475000 1 688 1 chr5D.!!$F3 687
8 TraesCS3B01G218800 chr5D 515100630 515101335 705 False 741.000000 741 86.037000 1 690 1 chr5D.!!$F2 689
9 TraesCS3B01G218800 chr7D 581268974 581269676 702 False 737.000000 737 86.017000 1 690 1 chr7D.!!$F1 689
10 TraesCS3B01G218800 chr4A 641514209 641514909 700 True 736.000000 736 86.060000 7 690 1 chr4A.!!$R2 683
11 TraesCS3B01G218800 chr4B 629712368 629713072 704 False 717.000000 717 85.431000 1 690 1 chr4B.!!$F2 689
12 TraesCS3B01G218800 chr6B 55686785 55687483 698 True 712.000000 712 85.449000 7 690 1 chr6B.!!$R1 683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
508 511 0.035152 CCTAGCAGGGACACATTGCA 60.035 55.000 0.00 0.0 40.22 4.08 F
1132 1362 0.108615 CTGACCACCCGCTAGTTCTG 60.109 60.000 0.00 0.0 0.00 3.02 F
2233 2463 0.322008 GGGAGCTTGAGTTCACCCAG 60.322 60.000 0.00 0.0 37.50 4.45 F
3485 3728 0.117340 AGGACCTCTAGGCCACAAGT 59.883 55.000 5.01 0.0 39.32 3.16 F
3486 3729 0.250513 GGACCTCTAGGCCACAAGTG 59.749 60.000 5.01 0.0 39.32 3.16 F
3806 4078 1.811266 CCCGGTGATGCTGAACTCG 60.811 63.158 0.00 0.0 0.00 4.18 F
4831 7756 1.326852 GCTGCTGACGAATGACATGAG 59.673 52.381 0.00 0.0 0.00 2.90 F
6443 9606 1.729586 TGGGTAAGTGCTTCACCTCT 58.270 50.000 6.45 0.0 34.49 3.69 F
6689 9902 1.782201 AACAGGCAGCATCTCACCCA 61.782 55.000 0.00 0.0 0.00 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2116 2346 1.338200 ACTGTCTCCCGATTCAACTGC 60.338 52.381 0.0 0.00 0.00 4.40 R
3122 3352 1.759445 CCCTCCACTCCTAGTCACATG 59.241 57.143 0.0 0.00 0.00 3.21 R
3793 4065 0.174389 GGAGAGCGAGTTCAGCATCA 59.826 55.000 0.0 0.00 37.01 3.07 R
4386 7311 1.577736 ACAGTCTTATCAGGGCAGCT 58.422 50.000 0.0 0.00 0.00 4.24 R
4563 7488 2.629617 CCAACTGCCACTCCTCAAATTT 59.370 45.455 0.0 0.00 0.00 1.82 R
5018 7943 4.833380 ACTACCTCTTCTTGCAACTCTGTA 59.167 41.667 0.0 0.00 0.00 2.74 R
6572 9735 2.034124 ACATGTTGCAGGAAACTTGCT 58.966 42.857 0.0 0.00 40.21 3.91 R
7337 10553 0.037046 CCAGGGCACAAATTCTTGGC 60.037 55.000 0.0 4.65 36.82 4.52 R
7823 11043 0.099436 GTGCATCGAAATGGTCAGCC 59.901 55.000 0.0 0.00 33.19 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.737735 CAGCCATCGTCGAGTTGCA 60.738 57.895 13.66 0.00 0.00 4.08
30 31 1.527311 GTCGAGTTGCACTTCTTGGTC 59.473 52.381 0.00 0.00 0.00 4.02
31 32 1.138069 TCGAGTTGCACTTCTTGGTCA 59.862 47.619 0.00 0.00 0.00 4.02
48 49 1.043816 TCATGGAGAGGGCGATTCTC 58.956 55.000 0.00 4.32 40.25 2.87
56 57 0.537188 AGGGCGATTCTCGTGTTGAT 59.463 50.000 0.00 0.00 42.81 2.57
89 91 6.551227 GCTTGGGTTTGGGAGATAAAGATATT 59.449 38.462 0.00 0.00 0.00 1.28
103 105 0.602638 GATATTCGTGATGGCGGCCA 60.603 55.000 26.11 26.11 38.19 5.36
138 140 1.031235 TGTCACATTGTGCAACCTGG 58.969 50.000 12.04 0.00 34.36 4.45
206 208 0.179184 GAGTCTCGAGCCTTGTCGAC 60.179 60.000 9.11 9.11 43.91 4.20
213 215 0.792356 GAGCCTTGTCGACGTCGTAC 60.792 60.000 34.40 28.50 40.80 3.67
299 301 2.983192 TCTCTGGATCGAGGTAGGAGAT 59.017 50.000 4.78 0.00 0.00 2.75
360 362 1.672356 CACCAGGAAGTTGGAGCGG 60.672 63.158 0.00 0.00 40.87 5.52
369 371 2.599281 TTGGAGCGGTGGAGTCGA 60.599 61.111 0.00 0.00 0.00 4.20
373 375 2.437895 AGCGGTGGAGTCGATCGA 60.438 61.111 15.15 15.15 0.00 3.59
385 387 1.080501 CGATCGACGATGGGGATGG 60.081 63.158 16.49 0.00 45.77 3.51
467 470 6.011185 AGAGGAGATAGGCTCTGAATACCATA 60.011 42.308 0.00 0.00 43.43 2.74
475 478 7.141758 AGGCTCTGAATACCATAAAAGATGA 57.858 36.000 0.00 0.00 0.00 2.92
477 480 6.767902 GGCTCTGAATACCATAAAAGATGACA 59.232 38.462 0.00 0.00 0.00 3.58
484 487 8.523915 AATACCATAAAAGATGACATGAAGCA 57.476 30.769 0.00 0.00 0.00 3.91
503 506 1.417517 CATATGCCTAGCAGGGACACA 59.582 52.381 4.65 0.00 43.65 3.72
508 511 0.035152 CCTAGCAGGGACACATTGCA 60.035 55.000 0.00 0.00 40.22 4.08
516 519 4.498009 GCAGGGACACATTGCATGTTATAC 60.498 45.833 0.00 0.00 42.70 1.47
527 530 4.318332 TGCATGTTATACATAGCCAGAGC 58.682 43.478 0.00 0.00 36.53 4.09
533 536 3.835478 ATACATAGCCAGAGCCTAGGA 57.165 47.619 14.75 0.00 41.25 2.94
557 561 8.416329 GGATTTACAGATTCGGTAGTTAGGTTA 58.584 37.037 0.00 0.00 0.00 2.85
617 625 3.152400 CCGCCGGCCTAACTACCT 61.152 66.667 23.46 0.00 0.00 3.08
626 634 4.117685 CGGCCTAACTACCTGATTACAAC 58.882 47.826 0.00 0.00 0.00 3.32
627 635 4.142004 CGGCCTAACTACCTGATTACAACT 60.142 45.833 0.00 0.00 0.00 3.16
695 720 8.278482 ACGTACAATATATTCTAACAAGACGC 57.722 34.615 0.00 0.00 0.00 5.19
696 721 7.916977 ACGTACAATATATTCTAACAAGACGCA 59.083 33.333 0.00 0.00 0.00 5.24
697 722 8.205948 CGTACAATATATTCTAACAAGACGCAC 58.794 37.037 0.00 0.00 0.00 5.34
698 723 7.478520 ACAATATATTCTAACAAGACGCACC 57.521 36.000 0.00 0.00 0.00 5.01
699 724 7.272978 ACAATATATTCTAACAAGACGCACCT 58.727 34.615 0.00 0.00 0.00 4.00
700 725 8.418662 ACAATATATTCTAACAAGACGCACCTA 58.581 33.333 0.00 0.00 0.00 3.08
701 726 8.916654 CAATATATTCTAACAAGACGCACCTAG 58.083 37.037 0.00 0.00 0.00 3.02
702 727 2.649331 TCTAACAAGACGCACCTAGC 57.351 50.000 0.00 0.00 40.87 3.42
703 728 1.890489 TCTAACAAGACGCACCTAGCA 59.110 47.619 0.00 0.00 46.13 3.49
704 729 1.993370 CTAACAAGACGCACCTAGCAC 59.007 52.381 0.00 0.00 46.13 4.40
705 730 0.393077 AACAAGACGCACCTAGCACT 59.607 50.000 0.00 0.00 46.13 4.40
706 731 1.254026 ACAAGACGCACCTAGCACTA 58.746 50.000 0.00 0.00 46.13 2.74
707 732 1.825474 ACAAGACGCACCTAGCACTAT 59.175 47.619 0.00 0.00 46.13 2.12
708 733 2.196749 CAAGACGCACCTAGCACTATG 58.803 52.381 0.00 0.00 46.13 2.23
709 734 1.763968 AGACGCACCTAGCACTATGA 58.236 50.000 0.00 0.00 46.13 2.15
710 735 1.405821 AGACGCACCTAGCACTATGAC 59.594 52.381 0.00 0.00 46.13 3.06
711 736 1.405821 GACGCACCTAGCACTATGACT 59.594 52.381 0.00 0.00 46.13 3.41
712 737 1.825474 ACGCACCTAGCACTATGACTT 59.175 47.619 0.00 0.00 46.13 3.01
713 738 2.233922 ACGCACCTAGCACTATGACTTT 59.766 45.455 0.00 0.00 46.13 2.66
714 739 3.262420 CGCACCTAGCACTATGACTTTT 58.738 45.455 0.00 0.00 46.13 2.27
715 740 3.307242 CGCACCTAGCACTATGACTTTTC 59.693 47.826 0.00 0.00 46.13 2.29
716 741 3.307242 GCACCTAGCACTATGACTTTTCG 59.693 47.826 0.00 0.00 44.79 3.46
717 742 4.744570 CACCTAGCACTATGACTTTTCGA 58.255 43.478 0.00 0.00 0.00 3.71
718 743 4.563184 CACCTAGCACTATGACTTTTCGAC 59.437 45.833 0.00 0.00 0.00 4.20
719 744 4.463186 ACCTAGCACTATGACTTTTCGACT 59.537 41.667 0.00 0.00 0.00 4.18
720 745 4.800993 CCTAGCACTATGACTTTTCGACTG 59.199 45.833 0.00 0.00 0.00 3.51
721 746 4.258702 AGCACTATGACTTTTCGACTGT 57.741 40.909 0.00 0.00 0.00 3.55
722 747 4.238514 AGCACTATGACTTTTCGACTGTC 58.761 43.478 0.00 0.00 0.00 3.51
723 748 4.021894 AGCACTATGACTTTTCGACTGTCT 60.022 41.667 6.21 0.00 0.00 3.41
724 749 4.090642 GCACTATGACTTTTCGACTGTCTG 59.909 45.833 6.21 0.01 0.00 3.51
725 750 4.090642 CACTATGACTTTTCGACTGTCTGC 59.909 45.833 6.21 0.00 0.00 4.26
726 751 2.890808 TGACTTTTCGACTGTCTGCT 57.109 45.000 6.21 0.00 0.00 4.24
727 752 4.521130 ATGACTTTTCGACTGTCTGCTA 57.479 40.909 6.21 0.00 0.00 3.49
728 753 3.639538 TGACTTTTCGACTGTCTGCTAC 58.360 45.455 6.21 0.00 0.00 3.58
729 754 2.657372 GACTTTTCGACTGTCTGCTACG 59.343 50.000 6.21 0.00 0.00 3.51
730 755 2.292569 ACTTTTCGACTGTCTGCTACGA 59.707 45.455 6.21 0.00 0.00 3.43
731 756 3.057456 ACTTTTCGACTGTCTGCTACGAT 60.057 43.478 6.21 0.00 33.25 3.73
732 757 4.155462 ACTTTTCGACTGTCTGCTACGATA 59.845 41.667 6.21 0.00 33.25 2.92
733 758 4.690184 TTTCGACTGTCTGCTACGATAA 57.310 40.909 6.21 0.00 33.25 1.75
734 759 3.946308 TCGACTGTCTGCTACGATAAG 57.054 47.619 6.21 0.00 0.00 1.73
735 760 2.612672 TCGACTGTCTGCTACGATAAGG 59.387 50.000 6.21 0.00 0.00 2.69
736 761 2.355132 CGACTGTCTGCTACGATAAGGT 59.645 50.000 6.21 0.00 0.00 3.50
737 762 3.181499 CGACTGTCTGCTACGATAAGGTT 60.181 47.826 6.21 0.00 0.00 3.50
738 763 4.674623 CGACTGTCTGCTACGATAAGGTTT 60.675 45.833 6.21 0.00 0.00 3.27
739 764 4.495422 ACTGTCTGCTACGATAAGGTTTG 58.505 43.478 0.00 0.00 0.00 2.93
740 765 4.021368 ACTGTCTGCTACGATAAGGTTTGT 60.021 41.667 0.00 0.00 0.00 2.83
741 766 4.491676 TGTCTGCTACGATAAGGTTTGTC 58.508 43.478 0.00 0.00 0.00 3.18
742 767 4.219944 TGTCTGCTACGATAAGGTTTGTCT 59.780 41.667 0.00 0.00 0.00 3.41
743 768 4.563184 GTCTGCTACGATAAGGTTTGTCTG 59.437 45.833 0.00 0.00 0.00 3.51
744 769 4.461431 TCTGCTACGATAAGGTTTGTCTGA 59.539 41.667 0.00 0.00 0.00 3.27
745 770 5.127194 TCTGCTACGATAAGGTTTGTCTGAT 59.873 40.000 0.00 0.00 0.00 2.90
746 771 5.730550 TGCTACGATAAGGTTTGTCTGATT 58.269 37.500 0.00 0.00 0.00 2.57
747 772 5.810587 TGCTACGATAAGGTTTGTCTGATTC 59.189 40.000 0.00 0.00 0.00 2.52
748 773 5.234543 GCTACGATAAGGTTTGTCTGATTCC 59.765 44.000 0.00 0.00 0.00 3.01
749 774 4.181578 ACGATAAGGTTTGTCTGATTCCG 58.818 43.478 0.00 0.00 0.00 4.30
750 775 4.081862 ACGATAAGGTTTGTCTGATTCCGA 60.082 41.667 0.00 0.00 0.00 4.55
751 776 4.868171 CGATAAGGTTTGTCTGATTCCGAA 59.132 41.667 0.00 0.00 0.00 4.30
752 777 5.005779 CGATAAGGTTTGTCTGATTCCGAAG 59.994 44.000 0.00 0.00 0.00 3.79
753 778 2.427506 AGGTTTGTCTGATTCCGAAGC 58.572 47.619 0.00 0.00 0.00 3.86
754 779 2.039084 AGGTTTGTCTGATTCCGAAGCT 59.961 45.455 0.00 0.00 0.00 3.74
755 780 2.160417 GGTTTGTCTGATTCCGAAGCTG 59.840 50.000 0.00 0.00 0.00 4.24
756 781 1.442769 TTGTCTGATTCCGAAGCTGC 58.557 50.000 0.00 0.00 0.00 5.25
757 782 0.737367 TGTCTGATTCCGAAGCTGCG 60.737 55.000 7.28 7.28 0.00 5.18
758 783 1.811266 TCTGATTCCGAAGCTGCGC 60.811 57.895 9.19 0.00 0.00 6.09
759 784 3.147889 CTGATTCCGAAGCTGCGCG 62.148 63.158 9.19 0.00 0.00 6.86
760 785 4.581648 GATTCCGAAGCTGCGCGC 62.582 66.667 27.26 27.26 39.57 6.86
769 794 2.050985 GCTGCGCGCTTTCAACTT 60.051 55.556 33.29 0.00 35.14 2.66
770 795 2.359791 GCTGCGCGCTTTCAACTTG 61.360 57.895 33.29 11.22 35.14 3.16
771 796 2.353376 TGCGCGCTTTCAACTTGC 60.353 55.556 33.29 0.00 0.00 4.01
772 797 2.050985 GCGCGCTTTCAACTTGCT 60.051 55.556 26.67 0.00 0.00 3.91
773 798 1.658409 GCGCGCTTTCAACTTGCTT 60.658 52.632 26.67 0.00 0.00 3.91
774 799 1.600284 GCGCGCTTTCAACTTGCTTC 61.600 55.000 26.67 0.00 0.00 3.86
775 800 0.316937 CGCGCTTTCAACTTGCTTCA 60.317 50.000 5.56 0.00 0.00 3.02
776 801 1.664016 CGCGCTTTCAACTTGCTTCAT 60.664 47.619 5.56 0.00 0.00 2.57
777 802 2.397549 GCGCTTTCAACTTGCTTCATT 58.602 42.857 0.00 0.00 0.00 2.57
778 803 2.154389 GCGCTTTCAACTTGCTTCATTG 59.846 45.455 0.00 0.00 0.00 2.82
779 804 3.374745 CGCTTTCAACTTGCTTCATTGT 58.625 40.909 0.00 0.00 0.00 2.71
780 805 4.536065 CGCTTTCAACTTGCTTCATTGTA 58.464 39.130 0.00 0.00 0.00 2.41
781 806 4.614284 CGCTTTCAACTTGCTTCATTGTAG 59.386 41.667 0.00 0.00 0.00 2.74
782 807 5.523369 GCTTTCAACTTGCTTCATTGTAGT 58.477 37.500 0.00 0.00 0.00 2.73
783 808 5.979517 GCTTTCAACTTGCTTCATTGTAGTT 59.020 36.000 0.00 0.00 0.00 2.24
784 809 6.074676 GCTTTCAACTTGCTTCATTGTAGTTG 60.075 38.462 0.00 0.00 44.27 3.16
785 810 6.449635 TTCAACTTGCTTCATTGTAGTTGT 57.550 33.333 11.61 0.00 43.68 3.32
786 811 6.060028 TCAACTTGCTTCATTGTAGTTGTC 57.940 37.500 11.61 0.00 43.68 3.18
787 812 4.732285 ACTTGCTTCATTGTAGTTGTCG 57.268 40.909 0.00 0.00 0.00 4.35
788 813 3.058914 ACTTGCTTCATTGTAGTTGTCGC 60.059 43.478 0.00 0.00 0.00 5.19
789 814 2.766313 TGCTTCATTGTAGTTGTCGCT 58.234 42.857 0.00 0.00 0.00 4.93
790 815 3.920446 TGCTTCATTGTAGTTGTCGCTA 58.080 40.909 0.00 0.00 0.00 4.26
791 816 3.926527 TGCTTCATTGTAGTTGTCGCTAG 59.073 43.478 0.00 0.00 0.00 3.42
792 817 3.307242 GCTTCATTGTAGTTGTCGCTAGG 59.693 47.826 0.00 0.00 0.00 3.02
793 818 4.495422 CTTCATTGTAGTTGTCGCTAGGT 58.505 43.478 0.00 0.00 0.00 3.08
794 819 3.845178 TCATTGTAGTTGTCGCTAGGTG 58.155 45.455 0.00 0.00 0.00 4.00
795 820 3.257375 TCATTGTAGTTGTCGCTAGGTGT 59.743 43.478 0.00 0.00 0.00 4.16
796 821 3.293311 TTGTAGTTGTCGCTAGGTGTC 57.707 47.619 0.00 0.00 0.00 3.67
797 822 2.511659 TGTAGTTGTCGCTAGGTGTCT 58.488 47.619 0.00 0.00 0.00 3.41
798 823 3.678289 TGTAGTTGTCGCTAGGTGTCTA 58.322 45.455 0.00 0.00 0.00 2.59
799 824 3.438087 TGTAGTTGTCGCTAGGTGTCTAC 59.562 47.826 0.00 0.00 0.00 2.59
800 825 1.467734 AGTTGTCGCTAGGTGTCTACG 59.532 52.381 0.00 0.00 0.00 3.51
801 826 1.466167 GTTGTCGCTAGGTGTCTACGA 59.534 52.381 0.00 0.00 31.65 3.43
802 827 1.812235 TGTCGCTAGGTGTCTACGAA 58.188 50.000 0.00 0.00 33.95 3.85
803 828 2.362736 TGTCGCTAGGTGTCTACGAAT 58.637 47.619 0.00 0.00 33.95 3.34
804 829 2.751259 TGTCGCTAGGTGTCTACGAATT 59.249 45.455 0.00 0.00 33.95 2.17
805 830 3.192001 TGTCGCTAGGTGTCTACGAATTT 59.808 43.478 0.00 0.00 33.95 1.82
806 831 3.546670 GTCGCTAGGTGTCTACGAATTTG 59.453 47.826 0.00 0.00 33.95 2.32
807 832 2.858344 CGCTAGGTGTCTACGAATTTGG 59.142 50.000 0.00 0.00 0.00 3.28
808 833 3.428452 CGCTAGGTGTCTACGAATTTGGA 60.428 47.826 0.00 0.00 0.00 3.53
809 834 4.694339 GCTAGGTGTCTACGAATTTGGAT 58.306 43.478 0.00 0.00 0.00 3.41
810 835 4.508124 GCTAGGTGTCTACGAATTTGGATG 59.492 45.833 0.00 0.00 0.00 3.51
811 836 3.270877 AGGTGTCTACGAATTTGGATGC 58.729 45.455 0.00 0.00 0.00 3.91
812 837 3.006940 GGTGTCTACGAATTTGGATGCA 58.993 45.455 0.00 0.00 0.00 3.96
813 838 3.438781 GGTGTCTACGAATTTGGATGCAA 59.561 43.478 0.00 0.00 0.00 4.08
814 839 4.096382 GGTGTCTACGAATTTGGATGCAAT 59.904 41.667 0.00 0.00 0.00 3.56
815 840 5.393027 GGTGTCTACGAATTTGGATGCAATT 60.393 40.000 0.00 0.00 0.00 2.32
816 841 6.092748 GTGTCTACGAATTTGGATGCAATTT 58.907 36.000 0.00 3.43 0.00 1.82
817 842 6.251376 GTGTCTACGAATTTGGATGCAATTTC 59.749 38.462 19.00 19.00 0.00 2.17
818 843 6.150976 TGTCTACGAATTTGGATGCAATTTCT 59.849 34.615 23.41 16.12 0.00 2.52
819 844 6.470235 GTCTACGAATTTGGATGCAATTTCTG 59.530 38.462 23.41 19.73 0.00 3.02
820 845 5.138125 ACGAATTTGGATGCAATTTCTGT 57.862 34.783 23.41 20.16 0.00 3.41
821 846 5.540911 ACGAATTTGGATGCAATTTCTGTT 58.459 33.333 23.41 11.22 0.00 3.16
822 847 5.990996 ACGAATTTGGATGCAATTTCTGTTT 59.009 32.000 23.41 9.46 0.00 2.83
823 848 6.146021 ACGAATTTGGATGCAATTTCTGTTTC 59.854 34.615 23.41 9.55 0.00 2.78
824 849 6.366877 CGAATTTGGATGCAATTTCTGTTTCT 59.633 34.615 23.41 0.00 0.00 2.52
825 850 7.095523 CGAATTTGGATGCAATTTCTGTTTCTT 60.096 33.333 23.41 0.00 0.00 2.52
826 851 7.662604 ATTTGGATGCAATTTCTGTTTCTTC 57.337 32.000 0.00 0.00 0.00 2.87
827 852 5.787953 TGGATGCAATTTCTGTTTCTTCA 57.212 34.783 0.00 0.00 0.00 3.02
828 853 6.349243 TGGATGCAATTTCTGTTTCTTCAT 57.651 33.333 0.00 0.00 0.00 2.57
829 854 6.160684 TGGATGCAATTTCTGTTTCTTCATG 58.839 36.000 0.00 0.00 0.00 3.07
830 855 6.161381 GGATGCAATTTCTGTTTCTTCATGT 58.839 36.000 0.00 0.00 0.00 3.21
831 856 6.090358 GGATGCAATTTCTGTTTCTTCATGTG 59.910 38.462 0.00 0.00 0.00 3.21
832 857 5.904941 TGCAATTTCTGTTTCTTCATGTGT 58.095 33.333 0.00 0.00 0.00 3.72
833 858 6.339730 TGCAATTTCTGTTTCTTCATGTGTT 58.660 32.000 0.00 0.00 0.00 3.32
834 859 6.817641 TGCAATTTCTGTTTCTTCATGTGTTT 59.182 30.769 0.00 0.00 0.00 2.83
835 860 7.978414 TGCAATTTCTGTTTCTTCATGTGTTTA 59.022 29.630 0.00 0.00 0.00 2.01
836 861 8.981647 GCAATTTCTGTTTCTTCATGTGTTTAT 58.018 29.630 0.00 0.00 0.00 1.40
843 868 8.795786 TGTTTCTTCATGTGTTTATTTACTGC 57.204 30.769 0.00 0.00 0.00 4.40
844 869 7.865385 TGTTTCTTCATGTGTTTATTTACTGCC 59.135 33.333 0.00 0.00 0.00 4.85
845 870 7.517614 TTCTTCATGTGTTTATTTACTGCCA 57.482 32.000 0.00 0.00 0.00 4.92
846 871 7.701539 TCTTCATGTGTTTATTTACTGCCAT 57.298 32.000 0.00 0.00 0.00 4.40
847 872 7.537715 TCTTCATGTGTTTATTTACTGCCATG 58.462 34.615 0.00 0.00 0.00 3.66
848 873 7.392953 TCTTCATGTGTTTATTTACTGCCATGA 59.607 33.333 0.00 0.00 0.00 3.07
849 874 6.851609 TCATGTGTTTATTTACTGCCATGAC 58.148 36.000 0.00 0.00 0.00 3.06
850 875 6.432472 TCATGTGTTTATTTACTGCCATGACA 59.568 34.615 0.00 0.00 0.00 3.58
851 876 6.641169 TGTGTTTATTTACTGCCATGACAA 57.359 33.333 0.00 0.00 0.00 3.18
852 877 7.225784 TGTGTTTATTTACTGCCATGACAAT 57.774 32.000 0.00 0.00 0.00 2.71
853 878 7.665690 TGTGTTTATTTACTGCCATGACAATT 58.334 30.769 0.00 0.00 0.00 2.32
854 879 8.797438 TGTGTTTATTTACTGCCATGACAATTA 58.203 29.630 0.00 0.00 0.00 1.40
855 880 9.632807 GTGTTTATTTACTGCCATGACAATTAA 57.367 29.630 0.00 0.00 0.00 1.40
859 884 9.800433 TTATTTACTGCCATGACAATTAATGTG 57.200 29.630 0.00 0.00 44.12 3.21
860 885 7.459795 TTTACTGCCATGACAATTAATGTGA 57.540 32.000 0.00 0.00 44.12 3.58
861 886 7.643569 TTACTGCCATGACAATTAATGTGAT 57.356 32.000 0.00 0.00 44.12 3.06
939 1158 2.159043 TGGCAATTAGAGGAGAAGCTCG 60.159 50.000 0.00 0.00 0.00 5.03
1025 1245 1.449070 CGAACCCGTAAAGGCTCCC 60.449 63.158 0.00 0.00 39.21 4.30
1039 1259 0.988063 GCTCCCCTTCTTCTCCAAGT 59.012 55.000 0.00 0.00 0.00 3.16
1087 1317 3.131478 CGGCGTCCACCCAAATCC 61.131 66.667 0.00 0.00 0.00 3.01
1088 1318 3.131478 GGCGTCCACCCAAATCCG 61.131 66.667 0.00 0.00 0.00 4.18
1089 1319 3.810896 GCGTCCACCCAAATCCGC 61.811 66.667 0.00 0.00 0.00 5.54
1090 1320 3.131478 CGTCCACCCAAATCCGCC 61.131 66.667 0.00 0.00 0.00 6.13
1091 1321 2.355115 GTCCACCCAAATCCGCCT 59.645 61.111 0.00 0.00 0.00 5.52
1092 1322 1.749258 GTCCACCCAAATCCGCCTC 60.749 63.158 0.00 0.00 0.00 4.70
1093 1323 2.824041 CCACCCAAATCCGCCTCG 60.824 66.667 0.00 0.00 0.00 4.63
1094 1324 3.508840 CACCCAAATCCGCCTCGC 61.509 66.667 0.00 0.00 0.00 5.03
1095 1325 4.796495 ACCCAAATCCGCCTCGCC 62.796 66.667 0.00 0.00 0.00 5.54
1123 1353 2.124983 CATGGCTCTGACCACCCG 60.125 66.667 1.87 0.00 44.17 5.28
1132 1362 0.108615 CTGACCACCCGCTAGTTCTG 60.109 60.000 0.00 0.00 0.00 3.02
1862 2092 3.123620 CCAAGCAGGAGACGCAGC 61.124 66.667 0.00 0.00 41.22 5.25
2050 2280 0.542805 TAGGGGTCGTGGTTTATGCC 59.457 55.000 0.00 0.00 0.00 4.40
2206 2436 0.529378 CAGGGATTTGGCTGCTGAAC 59.471 55.000 0.00 0.00 0.00 3.18
2233 2463 0.322008 GGGAGCTTGAGTTCACCCAG 60.322 60.000 0.00 0.00 37.50 4.45
2341 2571 4.501571 GCCGTCATAGTGTATCAGGTCATT 60.502 45.833 0.00 0.00 0.00 2.57
2702 2932 6.015940 GGTTTTGGTCAGTTGATGATCTTCTT 60.016 38.462 9.75 0.00 40.00 2.52
2856 3086 3.766591 ACTTGTCCTGGACACTAGAGATG 59.233 47.826 28.35 12.95 42.60 2.90
3004 3234 5.519808 TGGTGACAGACAGAGGTAAGATAT 58.480 41.667 0.00 0.00 35.01 1.63
3044 3274 6.596309 TGTGACCATTGTATTTGGCAATAA 57.404 33.333 0.00 0.00 37.81 1.40
3155 3385 1.341531 GTGGAGGGACACTATGATCCG 59.658 57.143 0.00 0.00 38.32 4.18
3279 3509 5.160641 CGGCTAGCACAAATGTTTTTATGT 58.839 37.500 18.24 0.00 0.00 2.29
3459 3702 2.119801 TTCTGCAAGGAGGCTGATTC 57.880 50.000 0.00 0.00 40.67 2.52
3460 3703 0.986527 TCTGCAAGGAGGCTGATTCA 59.013 50.000 0.00 0.00 36.91 2.57
3469 3712 1.004745 GAGGCTGATTCAAACCCAGGA 59.995 52.381 0.00 0.00 0.00 3.86
3470 3713 1.177401 GGCTGATTCAAACCCAGGAC 58.823 55.000 0.00 0.00 0.00 3.85
3471 3714 1.177401 GCTGATTCAAACCCAGGACC 58.823 55.000 0.00 0.00 0.00 4.46
3472 3715 1.272147 GCTGATTCAAACCCAGGACCT 60.272 52.381 0.00 0.00 0.00 3.85
3473 3716 2.716217 CTGATTCAAACCCAGGACCTC 58.284 52.381 0.00 0.00 0.00 3.85
3474 3717 2.307098 CTGATTCAAACCCAGGACCTCT 59.693 50.000 0.00 0.00 0.00 3.69
3475 3718 3.519510 CTGATTCAAACCCAGGACCTCTA 59.480 47.826 0.00 0.00 0.00 2.43
3477 3720 1.952621 TCAAACCCAGGACCTCTAGG 58.047 55.000 0.00 0.00 42.17 3.02
3478 3721 0.253327 CAAACCCAGGACCTCTAGGC 59.747 60.000 0.00 0.00 39.32 3.93
3479 3722 0.914902 AAACCCAGGACCTCTAGGCC 60.915 60.000 0.00 0.00 39.32 5.19
3480 3723 2.119847 AACCCAGGACCTCTAGGCCA 62.120 60.000 5.01 0.00 39.32 5.36
3481 3724 2.066999 CCCAGGACCTCTAGGCCAC 61.067 68.421 5.01 0.00 39.32 5.01
3482 3725 1.306141 CCAGGACCTCTAGGCCACA 60.306 63.158 5.01 0.00 39.32 4.17
3483 3726 0.909610 CCAGGACCTCTAGGCCACAA 60.910 60.000 5.01 0.00 39.32 3.33
3484 3727 0.539051 CAGGACCTCTAGGCCACAAG 59.461 60.000 5.01 0.00 39.32 3.16
3485 3728 0.117340 AGGACCTCTAGGCCACAAGT 59.883 55.000 5.01 0.00 39.32 3.16
3486 3729 0.250513 GGACCTCTAGGCCACAAGTG 59.749 60.000 5.01 0.00 39.32 3.16
3567 3810 5.534654 TCCAAATTTGAACAGTGGTAGGAAG 59.465 40.000 19.86 0.00 0.00 3.46
3715 3987 5.063880 AGTTATCTCCATTACCAATTCGGC 58.936 41.667 0.00 0.00 39.03 5.54
3734 4006 3.413558 GGCGTGTCAAATTGTATTCGTC 58.586 45.455 0.00 0.00 0.00 4.20
3806 4078 1.811266 CCCGGTGATGCTGAACTCG 60.811 63.158 0.00 0.00 0.00 4.18
3866 4138 7.767261 TGCTGTATTTCCGTTATTTGCTTAAT 58.233 30.769 0.00 0.00 0.00 1.40
4121 4401 8.766994 AGGGAGTAATATATTTTGCAACATGT 57.233 30.769 8.36 4.26 0.00 3.21
4201 4481 7.810766 ATTGTTGCTGGTTTATTAATTGTCG 57.189 32.000 0.00 0.00 0.00 4.35
4291 7216 4.209538 TCATTAGCATGCTTGGCTTACAT 58.790 39.130 28.02 0.00 42.62 2.29
4386 7311 4.897509 AAGAGGATGTCTGTCATTGTCA 57.102 40.909 0.00 0.00 36.83 3.58
4563 7488 3.394674 TGCGTGAATTGAGTCAACCTA 57.605 42.857 7.96 0.00 0.00 3.08
4831 7756 1.326852 GCTGCTGACGAATGACATGAG 59.673 52.381 0.00 0.00 0.00 2.90
5018 7943 7.120726 GGTAACAGCCTTGTTTACATACTTGAT 59.879 37.037 0.00 0.00 45.01 2.57
5040 7965 4.264460 ACAGAGTTGCAAGAAGAGGTAG 57.736 45.455 0.00 0.00 0.00 3.18
5050 8207 2.903798 AGAAGAGGTAGTACTCGTCCG 58.096 52.381 0.00 0.00 43.93 4.79
5057 8214 5.023533 AGGTAGTACTCGTCCGTATGTAA 57.976 43.478 0.00 0.00 0.00 2.41
5093 8251 9.344772 TGCTGTACTAATTTTCTTTTGTCCTTA 57.655 29.630 0.00 0.00 0.00 2.69
5303 8461 2.561209 TGGTATACCCTCCTGCTTCA 57.439 50.000 19.42 0.00 34.29 3.02
5347 8505 3.120321 AGGAGACAACGTGTGCATTAA 57.880 42.857 0.00 0.00 0.00 1.40
5762 8923 9.909644 CTAGTGTTACATATAAGATGTGTACCC 57.090 37.037 0.00 0.00 36.73 3.69
5779 8940 8.228035 TGTGTACCCTGGCATTATAAATTTAC 57.772 34.615 0.00 0.00 0.00 2.01
5964 9127 7.539710 CCCAAAATAATGCTTATGATGTGATCG 59.460 37.037 0.00 0.00 0.00 3.69
6443 9606 1.729586 TGGGTAAGTGCTTCACCTCT 58.270 50.000 6.45 0.00 34.49 3.69
6445 9608 1.903183 GGGTAAGTGCTTCACCTCTCT 59.097 52.381 0.00 0.00 34.49 3.10
6480 9643 7.202526 ACTGATGCCATTATTTTTGTATTCCG 58.797 34.615 0.00 0.00 0.00 4.30
6569 9732 6.127168 ACTGTTTTCTCCATCGGACATATACA 60.127 38.462 0.00 0.00 0.00 2.29
6572 9735 8.425703 TGTTTTCTCCATCGGACATATACAATA 58.574 33.333 0.00 0.00 0.00 1.90
6689 9902 1.782201 AACAGGCAGCATCTCACCCA 61.782 55.000 0.00 0.00 0.00 4.51
6811 10024 2.574006 TCTTTGCAAGCATCTCTGGT 57.426 45.000 0.00 0.00 33.62 4.00
6876 10089 7.394016 TGAGTAGGATTTCTGATAAGTGCAAA 58.606 34.615 0.00 0.00 0.00 3.68
6877 10090 7.334421 TGAGTAGGATTTCTGATAAGTGCAAAC 59.666 37.037 0.00 0.00 0.00 2.93
6879 10092 5.574188 AGGATTTCTGATAAGTGCAAACCT 58.426 37.500 0.00 0.00 0.00 3.50
6880 10093 5.416952 AGGATTTCTGATAAGTGCAAACCTG 59.583 40.000 0.00 0.00 0.00 4.00
7250 10466 6.547880 TGTATACGGGCCATTCATTTGTTAAT 59.452 34.615 4.39 0.00 0.00 1.40
7337 10553 7.865385 TGAAAAGGAAATAGAAATTGTTGACGG 59.135 33.333 0.00 0.00 0.00 4.79
7397 10613 4.589908 AGTCATAAGGTGAATGGGTGAAC 58.410 43.478 0.00 0.00 38.90 3.18
7419 10635 8.573035 TGAACACTGCGATGTATATTATCACTA 58.427 33.333 0.00 0.00 30.75 2.74
7534 10754 2.737544 TGTTGAGCATACAATGGGCAT 58.262 42.857 0.00 0.00 32.36 4.40
7612 10832 1.068816 GTTGGTTCCATTTCGGTTCCG 60.069 52.381 4.74 4.74 35.57 4.30
7636 10856 6.101997 GGAATTAAGCATTTGGAGAAGGTTG 58.898 40.000 0.00 0.00 0.00 3.77
7682 10902 6.752351 ACTTGAGAACATGTTAGCTACATACG 59.248 38.462 11.95 3.15 45.71 3.06
7683 10903 5.041287 TGAGAACATGTTAGCTACATACGC 58.959 41.667 11.95 0.00 45.71 4.42
7718 10938 4.530946 TCAATCCTCCTAAAACGGAAGAGT 59.469 41.667 0.00 0.00 31.44 3.24
7793 11013 1.217511 CAGATGGAGCACGCTCTGT 59.782 57.895 17.99 7.58 42.38 3.41
7804 11024 0.176680 ACGCTCTGTATTCCAGCAGG 59.823 55.000 0.00 0.00 41.25 4.85
7923 11143 2.849294 ACTCCCTGAAGAAGCAGAAC 57.151 50.000 0.00 0.00 38.14 3.01
8133 11353 6.418057 TGGCATTGGTTAGAAACAAAAGAT 57.582 33.333 0.00 0.00 0.00 2.40
8211 11467 0.175302 CCTGCAGAGCCTGTGTAGAG 59.825 60.000 17.39 0.00 33.43 2.43
8285 11574 0.182775 ACCGAACTCTTTGTGGCCTT 59.817 50.000 3.32 0.00 0.00 4.35
8304 11593 3.881688 CCTTAGCTGGGTCATCAATTCTG 59.118 47.826 0.00 0.00 0.00 3.02
8305 11594 4.384537 CCTTAGCTGGGTCATCAATTCTGA 60.385 45.833 0.00 0.00 35.56 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.738099 GTGCAACTCGACGATGGCT 60.738 57.895 14.05 0.00 0.00 4.75
20 21 1.912043 CCCTCTCCATGACCAAGAAGT 59.088 52.381 0.00 0.00 0.00 3.01
30 31 3.603144 GAGAATCGCCCTCTCCATG 57.397 57.895 0.00 0.00 34.42 3.66
48 49 0.581529 AAGCACACGTCATCAACACG 59.418 50.000 0.00 0.00 43.13 4.49
56 57 1.380403 CCAAACCCAAGCACACGTCA 61.380 55.000 0.00 0.00 0.00 4.35
89 91 2.823593 CATTGGCCGCCATCACGA 60.824 61.111 14.30 0.00 31.53 4.35
113 115 2.603247 GCACAATGTGACACGGCGA 61.603 57.895 18.66 0.00 35.23 5.54
138 140 1.189752 TCTCAGCTCCTGTCATGGTC 58.810 55.000 0.00 0.00 32.61 4.02
206 208 2.807895 CCAACCCTGCGTACGACG 60.808 66.667 21.65 8.40 45.88 5.12
253 255 3.482783 GCCGACGCAGAAGCTCAC 61.483 66.667 0.00 0.00 39.10 3.51
277 279 2.778270 TCTCCTACCTCGATCCAGAGAA 59.222 50.000 0.00 0.00 40.57 2.87
369 371 2.217038 CCCCATCCCCATCGTCGAT 61.217 63.158 0.75 0.75 0.00 3.59
467 470 5.597182 AGGCATATGCTTCATGTCATCTTTT 59.403 36.000 26.12 0.00 41.70 2.27
475 478 3.409570 CTGCTAGGCATATGCTTCATGT 58.590 45.455 26.12 7.81 38.13 3.21
477 480 2.290768 CCCTGCTAGGCATATGCTTCAT 60.291 50.000 26.12 12.84 38.13 2.57
484 487 1.806496 TGTGTCCCTGCTAGGCATAT 58.194 50.000 0.00 0.00 38.13 1.78
503 506 5.413833 GCTCTGGCTATGTATAACATGCAAT 59.586 40.000 2.83 0.00 39.53 3.56
508 511 5.423610 CCTAGGCTCTGGCTATGTATAACAT 59.576 44.000 0.00 0.00 39.87 2.71
516 519 4.284490 TGTAAATCCTAGGCTCTGGCTATG 59.716 45.833 2.96 0.00 39.87 2.23
527 530 6.651975 ACTACCGAATCTGTAAATCCTAGG 57.348 41.667 0.82 0.82 0.00 3.02
533 536 9.760077 CATAACCTAACTACCGAATCTGTAAAT 57.240 33.333 0.00 0.00 0.00 1.40
582 587 2.286654 GCGGCTGATCTTTATCTTGTGC 60.287 50.000 0.00 0.00 32.93 4.57
617 625 6.203915 ACATTAACTTGCGTGAGTTGTAATCA 59.796 34.615 13.51 0.00 39.99 2.57
626 634 6.639686 ACCGTATATACATTAACTTGCGTGAG 59.360 38.462 13.22 0.00 0.00 3.51
627 635 6.506147 ACCGTATATACATTAACTTGCGTGA 58.494 36.000 13.22 0.00 0.00 4.35
693 718 2.586258 AAGTCATAGTGCTAGGTGCG 57.414 50.000 0.00 0.00 46.63 5.34
694 719 3.307242 CGAAAAGTCATAGTGCTAGGTGC 59.693 47.826 0.00 0.00 43.25 5.01
695 720 4.563184 GTCGAAAAGTCATAGTGCTAGGTG 59.437 45.833 0.00 0.00 0.00 4.00
696 721 4.463186 AGTCGAAAAGTCATAGTGCTAGGT 59.537 41.667 0.00 0.00 0.00 3.08
697 722 4.800993 CAGTCGAAAAGTCATAGTGCTAGG 59.199 45.833 0.00 0.00 0.00 3.02
698 723 5.403246 ACAGTCGAAAAGTCATAGTGCTAG 58.597 41.667 0.00 0.00 0.00 3.42
699 724 5.183331 AGACAGTCGAAAAGTCATAGTGCTA 59.817 40.000 13.49 0.00 34.80 3.49
700 725 4.021894 AGACAGTCGAAAAGTCATAGTGCT 60.022 41.667 13.49 0.00 34.80 4.40
701 726 4.090642 CAGACAGTCGAAAAGTCATAGTGC 59.909 45.833 13.49 0.00 34.80 4.40
702 727 4.090642 GCAGACAGTCGAAAAGTCATAGTG 59.909 45.833 13.49 6.07 34.80 2.74
703 728 4.021894 AGCAGACAGTCGAAAAGTCATAGT 60.022 41.667 13.49 0.00 34.80 2.12
704 729 4.489810 AGCAGACAGTCGAAAAGTCATAG 58.510 43.478 13.49 6.13 34.80 2.23
705 730 4.521130 AGCAGACAGTCGAAAAGTCATA 57.479 40.909 13.49 0.00 34.80 2.15
706 731 3.393089 AGCAGACAGTCGAAAAGTCAT 57.607 42.857 13.49 0.06 34.80 3.06
707 732 2.890808 AGCAGACAGTCGAAAAGTCA 57.109 45.000 13.49 0.00 34.80 3.41
708 733 2.657372 CGTAGCAGACAGTCGAAAAGTC 59.343 50.000 5.32 5.32 0.00 3.01
709 734 2.292569 TCGTAGCAGACAGTCGAAAAGT 59.707 45.455 0.00 0.00 0.00 2.66
710 735 2.929960 TCGTAGCAGACAGTCGAAAAG 58.070 47.619 0.00 0.00 0.00 2.27
711 736 3.570926 ATCGTAGCAGACAGTCGAAAA 57.429 42.857 0.00 0.00 34.38 2.29
712 737 4.438336 CCTTATCGTAGCAGACAGTCGAAA 60.438 45.833 0.00 0.00 34.38 3.46
713 738 3.064958 CCTTATCGTAGCAGACAGTCGAA 59.935 47.826 0.00 0.00 34.38 3.71
714 739 2.612672 CCTTATCGTAGCAGACAGTCGA 59.387 50.000 0.00 0.00 35.14 4.20
715 740 2.355132 ACCTTATCGTAGCAGACAGTCG 59.645 50.000 0.00 0.00 0.00 4.18
716 741 4.373348 AACCTTATCGTAGCAGACAGTC 57.627 45.455 0.00 0.00 0.00 3.51
717 742 4.021368 ACAAACCTTATCGTAGCAGACAGT 60.021 41.667 0.00 0.00 0.00 3.55
718 743 4.495422 ACAAACCTTATCGTAGCAGACAG 58.505 43.478 0.00 0.00 0.00 3.51
719 744 4.219944 AGACAAACCTTATCGTAGCAGACA 59.780 41.667 0.00 0.00 0.00 3.41
720 745 4.563184 CAGACAAACCTTATCGTAGCAGAC 59.437 45.833 0.00 0.00 0.00 3.51
721 746 4.461431 TCAGACAAACCTTATCGTAGCAGA 59.539 41.667 0.00 0.00 0.00 4.26
722 747 4.744570 TCAGACAAACCTTATCGTAGCAG 58.255 43.478 0.00 0.00 0.00 4.24
723 748 4.794278 TCAGACAAACCTTATCGTAGCA 57.206 40.909 0.00 0.00 0.00 3.49
724 749 5.234543 GGAATCAGACAAACCTTATCGTAGC 59.765 44.000 0.00 0.00 0.00 3.58
725 750 5.459107 CGGAATCAGACAAACCTTATCGTAG 59.541 44.000 0.00 0.00 0.00 3.51
726 751 5.125900 TCGGAATCAGACAAACCTTATCGTA 59.874 40.000 0.00 0.00 0.00 3.43
727 752 4.081862 TCGGAATCAGACAAACCTTATCGT 60.082 41.667 0.00 0.00 0.00 3.73
728 753 4.430007 TCGGAATCAGACAAACCTTATCG 58.570 43.478 0.00 0.00 0.00 2.92
729 754 5.220681 GCTTCGGAATCAGACAAACCTTATC 60.221 44.000 0.00 0.00 0.00 1.75
730 755 4.636206 GCTTCGGAATCAGACAAACCTTAT 59.364 41.667 0.00 0.00 0.00 1.73
731 756 4.000988 GCTTCGGAATCAGACAAACCTTA 58.999 43.478 0.00 0.00 0.00 2.69
732 757 2.814336 GCTTCGGAATCAGACAAACCTT 59.186 45.455 0.00 0.00 0.00 3.50
733 758 2.039084 AGCTTCGGAATCAGACAAACCT 59.961 45.455 0.00 0.00 0.00 3.50
734 759 2.160417 CAGCTTCGGAATCAGACAAACC 59.840 50.000 0.00 0.00 0.00 3.27
735 760 2.413371 GCAGCTTCGGAATCAGACAAAC 60.413 50.000 0.00 0.00 0.00 2.93
736 761 1.806542 GCAGCTTCGGAATCAGACAAA 59.193 47.619 0.00 0.00 0.00 2.83
737 762 1.442769 GCAGCTTCGGAATCAGACAA 58.557 50.000 0.00 0.00 0.00 3.18
738 763 0.737367 CGCAGCTTCGGAATCAGACA 60.737 55.000 0.00 0.00 0.00 3.41
739 764 2.002127 CGCAGCTTCGGAATCAGAC 58.998 57.895 0.00 0.00 0.00 3.51
740 765 4.502263 CGCAGCTTCGGAATCAGA 57.498 55.556 0.00 0.00 0.00 3.27
753 778 2.359791 GCAAGTTGAAAGCGCGCAG 61.360 57.895 35.10 11.53 0.00 5.18
754 779 2.335052 AAGCAAGTTGAAAGCGCGCA 62.335 50.000 35.10 9.85 0.00 6.09
755 780 1.600284 GAAGCAAGTTGAAAGCGCGC 61.600 55.000 26.66 26.66 0.00 6.86
756 781 0.316937 TGAAGCAAGTTGAAAGCGCG 60.317 50.000 7.16 0.00 0.00 6.86
757 782 2.056094 ATGAAGCAAGTTGAAAGCGC 57.944 45.000 7.16 0.00 0.00 5.92
758 783 3.374745 ACAATGAAGCAAGTTGAAAGCG 58.625 40.909 7.16 0.00 0.00 4.68
759 784 5.523369 ACTACAATGAAGCAAGTTGAAAGC 58.477 37.500 7.16 0.00 0.00 3.51
760 785 6.974622 ACAACTACAATGAAGCAAGTTGAAAG 59.025 34.615 17.61 3.25 46.29 2.62
761 786 6.862209 ACAACTACAATGAAGCAAGTTGAAA 58.138 32.000 17.61 0.00 46.29 2.69
762 787 6.449635 ACAACTACAATGAAGCAAGTTGAA 57.550 33.333 17.61 0.00 46.29 2.69
763 788 5.277297 CGACAACTACAATGAAGCAAGTTGA 60.277 40.000 17.61 0.00 46.29 3.18
765 790 4.554723 GCGACAACTACAATGAAGCAAGTT 60.555 41.667 0.00 0.00 0.00 2.66
766 791 3.058914 GCGACAACTACAATGAAGCAAGT 60.059 43.478 0.00 0.00 0.00 3.16
767 792 3.187227 AGCGACAACTACAATGAAGCAAG 59.813 43.478 0.00 0.00 0.00 4.01
768 793 3.138304 AGCGACAACTACAATGAAGCAA 58.862 40.909 0.00 0.00 0.00 3.91
769 794 2.766313 AGCGACAACTACAATGAAGCA 58.234 42.857 0.00 0.00 0.00 3.91
770 795 3.307242 CCTAGCGACAACTACAATGAAGC 59.693 47.826 0.00 0.00 0.00 3.86
771 796 4.327357 CACCTAGCGACAACTACAATGAAG 59.673 45.833 0.00 0.00 0.00 3.02
772 797 4.242475 CACCTAGCGACAACTACAATGAA 58.758 43.478 0.00 0.00 0.00 2.57
773 798 3.257375 ACACCTAGCGACAACTACAATGA 59.743 43.478 0.00 0.00 0.00 2.57
774 799 3.585862 ACACCTAGCGACAACTACAATG 58.414 45.455 0.00 0.00 0.00 2.82
775 800 3.510360 AGACACCTAGCGACAACTACAAT 59.490 43.478 0.00 0.00 0.00 2.71
776 801 2.889045 AGACACCTAGCGACAACTACAA 59.111 45.455 0.00 0.00 0.00 2.41
777 802 2.511659 AGACACCTAGCGACAACTACA 58.488 47.619 0.00 0.00 0.00 2.74
778 803 3.484886 CGTAGACACCTAGCGACAACTAC 60.485 52.174 0.00 0.00 0.00 2.73
779 804 2.674852 CGTAGACACCTAGCGACAACTA 59.325 50.000 0.00 0.00 0.00 2.24
780 805 1.467734 CGTAGACACCTAGCGACAACT 59.532 52.381 0.00 0.00 0.00 3.16
781 806 1.466167 TCGTAGACACCTAGCGACAAC 59.534 52.381 0.00 0.00 0.00 3.32
782 807 1.812235 TCGTAGACACCTAGCGACAA 58.188 50.000 0.00 0.00 0.00 3.18
783 808 1.812235 TTCGTAGACACCTAGCGACA 58.188 50.000 0.00 0.00 34.32 4.35
784 809 3.417690 AATTCGTAGACACCTAGCGAC 57.582 47.619 0.00 0.00 34.32 5.19
785 810 3.428452 CCAAATTCGTAGACACCTAGCGA 60.428 47.826 0.00 0.00 34.32 4.93
786 811 2.858344 CCAAATTCGTAGACACCTAGCG 59.142 50.000 0.00 0.00 34.32 4.26
787 812 4.119442 TCCAAATTCGTAGACACCTAGC 57.881 45.455 0.00 0.00 34.32 3.42
788 813 4.508124 GCATCCAAATTCGTAGACACCTAG 59.492 45.833 0.00 0.00 34.32 3.02
789 814 4.081365 TGCATCCAAATTCGTAGACACCTA 60.081 41.667 0.00 0.00 34.32 3.08
790 815 3.270877 GCATCCAAATTCGTAGACACCT 58.729 45.455 0.00 0.00 34.32 4.00
791 816 3.006940 TGCATCCAAATTCGTAGACACC 58.993 45.455 0.00 0.00 34.32 4.16
792 817 4.678509 TTGCATCCAAATTCGTAGACAC 57.321 40.909 0.00 0.00 34.32 3.67
793 818 5.895636 AATTGCATCCAAATTCGTAGACA 57.104 34.783 0.00 0.00 32.05 3.41
794 819 6.470235 CAGAAATTGCATCCAAATTCGTAGAC 59.530 38.462 0.00 0.00 42.79 2.59
795 820 6.150976 ACAGAAATTGCATCCAAATTCGTAGA 59.849 34.615 0.00 0.00 42.79 2.59
796 821 6.324819 ACAGAAATTGCATCCAAATTCGTAG 58.675 36.000 0.00 0.00 42.79 3.51
797 822 6.266168 ACAGAAATTGCATCCAAATTCGTA 57.734 33.333 0.00 0.00 42.79 3.43
798 823 5.138125 ACAGAAATTGCATCCAAATTCGT 57.862 34.783 0.00 0.00 42.79 3.85
799 824 6.366877 AGAAACAGAAATTGCATCCAAATTCG 59.633 34.615 0.00 0.00 42.79 3.34
800 825 7.662604 AGAAACAGAAATTGCATCCAAATTC 57.337 32.000 0.00 0.00 39.86 2.17
801 826 7.716123 TGAAGAAACAGAAATTGCATCCAAATT 59.284 29.630 0.00 0.00 34.05 1.82
802 827 7.218614 TGAAGAAACAGAAATTGCATCCAAAT 58.781 30.769 0.00 0.00 34.05 2.32
803 828 6.580788 TGAAGAAACAGAAATTGCATCCAAA 58.419 32.000 0.00 0.00 34.05 3.28
804 829 6.159299 TGAAGAAACAGAAATTGCATCCAA 57.841 33.333 0.00 0.00 35.01 3.53
805 830 5.787953 TGAAGAAACAGAAATTGCATCCA 57.212 34.783 0.00 0.00 0.00 3.41
806 831 6.090358 CACATGAAGAAACAGAAATTGCATCC 59.910 38.462 0.00 0.00 0.00 3.51
807 832 6.643770 ACACATGAAGAAACAGAAATTGCATC 59.356 34.615 0.00 0.00 0.00 3.91
808 833 6.518493 ACACATGAAGAAACAGAAATTGCAT 58.482 32.000 0.00 0.00 0.00 3.96
809 834 5.904941 ACACATGAAGAAACAGAAATTGCA 58.095 33.333 0.00 0.00 0.00 4.08
810 835 6.833342 AACACATGAAGAAACAGAAATTGC 57.167 33.333 0.00 0.00 0.00 3.56
817 842 8.905702 GCAGTAAATAAACACATGAAGAAACAG 58.094 33.333 0.00 0.00 0.00 3.16
818 843 7.865385 GGCAGTAAATAAACACATGAAGAAACA 59.135 33.333 0.00 0.00 0.00 2.83
819 844 7.865385 TGGCAGTAAATAAACACATGAAGAAAC 59.135 33.333 0.00 0.00 0.00 2.78
820 845 7.946207 TGGCAGTAAATAAACACATGAAGAAA 58.054 30.769 0.00 0.00 0.00 2.52
821 846 7.517614 TGGCAGTAAATAAACACATGAAGAA 57.482 32.000 0.00 0.00 0.00 2.52
822 847 7.392953 TCATGGCAGTAAATAAACACATGAAGA 59.607 33.333 0.00 0.00 40.06 2.87
823 848 7.485913 GTCATGGCAGTAAATAAACACATGAAG 59.514 37.037 0.00 0.00 43.22 3.02
824 849 7.040132 TGTCATGGCAGTAAATAAACACATGAA 60.040 33.333 0.00 0.00 43.22 2.57
825 850 6.432472 TGTCATGGCAGTAAATAAACACATGA 59.568 34.615 0.00 0.00 40.54 3.07
826 851 6.619744 TGTCATGGCAGTAAATAAACACATG 58.380 36.000 0.00 0.00 36.66 3.21
827 852 6.832520 TGTCATGGCAGTAAATAAACACAT 57.167 33.333 0.00 0.00 0.00 3.21
828 853 6.641169 TTGTCATGGCAGTAAATAAACACA 57.359 33.333 0.00 0.00 0.00 3.72
829 854 9.632807 TTAATTGTCATGGCAGTAAATAAACAC 57.367 29.630 0.00 0.00 0.00 3.32
833 858 9.800433 CACATTAATTGTCATGGCAGTAAATAA 57.200 29.630 0.00 0.00 36.00 1.40
834 859 9.183368 TCACATTAATTGTCATGGCAGTAAATA 57.817 29.630 0.00 0.00 36.00 1.40
835 860 8.065473 TCACATTAATTGTCATGGCAGTAAAT 57.935 30.769 0.00 0.00 36.00 1.40
836 861 7.459795 TCACATTAATTGTCATGGCAGTAAA 57.540 32.000 0.00 0.00 36.00 2.01
837 862 7.338957 TCATCACATTAATTGTCATGGCAGTAA 59.661 33.333 0.00 4.07 37.41 2.24
838 863 6.827762 TCATCACATTAATTGTCATGGCAGTA 59.172 34.615 0.00 0.00 37.41 2.74
839 864 5.653330 TCATCACATTAATTGTCATGGCAGT 59.347 36.000 0.00 0.00 37.41 4.40
840 865 6.139048 TCATCACATTAATTGTCATGGCAG 57.861 37.500 0.00 0.00 37.41 4.85
841 866 6.527057 TTCATCACATTAATTGTCATGGCA 57.473 33.333 0.00 0.00 37.41 4.92
842 867 8.570488 TCTATTCATCACATTAATTGTCATGGC 58.430 33.333 0.00 0.00 37.41 4.40
875 900 9.613428 TCTCTCAAATTTCCGTCATGTAAATAT 57.387 29.630 0.00 0.00 0.00 1.28
876 901 9.613428 ATCTCTCAAATTTCCGTCATGTAAATA 57.387 29.630 0.00 0.00 0.00 1.40
877 902 7.921786 TCTCTCAAATTTCCGTCATGTAAAT 57.078 32.000 0.00 0.00 0.00 1.40
878 903 7.921786 ATCTCTCAAATTTCCGTCATGTAAA 57.078 32.000 0.00 0.00 0.00 2.01
879 904 7.148255 CCAATCTCTCAAATTTCCGTCATGTAA 60.148 37.037 0.00 0.00 0.00 2.41
880 905 6.316140 CCAATCTCTCAAATTTCCGTCATGTA 59.684 38.462 0.00 0.00 0.00 2.29
881 906 5.124457 CCAATCTCTCAAATTTCCGTCATGT 59.876 40.000 0.00 0.00 0.00 3.21
882 907 5.355071 TCCAATCTCTCAAATTTCCGTCATG 59.645 40.000 0.00 0.00 0.00 3.07
883 908 5.500234 TCCAATCTCTCAAATTTCCGTCAT 58.500 37.500 0.00 0.00 0.00 3.06
884 909 4.905429 TCCAATCTCTCAAATTTCCGTCA 58.095 39.130 0.00 0.00 0.00 4.35
885 910 5.880054 TTCCAATCTCTCAAATTTCCGTC 57.120 39.130 0.00 0.00 0.00 4.79
886 911 6.840780 AATTCCAATCTCTCAAATTTCCGT 57.159 33.333 0.00 0.00 0.00 4.69
939 1158 1.542328 GGGTTGGTGGCAAATTTGGAC 60.542 52.381 19.47 3.91 0.00 4.02
966 1185 2.897350 GGCGCGATTTGGGGAGAG 60.897 66.667 12.10 0.00 0.00 3.20
1025 1245 3.558109 GGTGAGGAACTTGGAGAAGAAGG 60.558 52.174 0.00 0.00 41.55 3.46
1039 1259 2.525629 TGGCGGTGAGGTGAGGAA 60.526 61.111 0.00 0.00 0.00 3.36
1114 1344 1.541310 CCAGAACTAGCGGGTGGTCA 61.541 60.000 0.00 0.00 0.00 4.02
1123 1353 1.222113 GGAGGTGGCCAGAACTAGC 59.778 63.158 5.11 0.00 0.00 3.42
1132 1362 4.129148 GTCATGGGGGAGGTGGCC 62.129 72.222 0.00 0.00 0.00 5.36
2050 2280 3.786635 CATGACCTTAGTCTCCTTTCCG 58.213 50.000 0.00 0.00 43.91 4.30
2106 2336 2.688507 GATTCAACTGCGTCTCCAAGA 58.311 47.619 0.00 0.00 0.00 3.02
2116 2346 1.338200 ACTGTCTCCCGATTCAACTGC 60.338 52.381 0.00 0.00 0.00 4.40
2233 2463 9.880064 GTTGTGTAATCCTTTTCTCTAAAGAAC 57.120 33.333 0.00 0.00 45.00 3.01
2702 2932 2.114616 ACTGCCATTTTTGGTGTCCAA 58.885 42.857 0.00 0.00 42.29 3.53
3004 3234 3.555956 GTCACAAAGCGAAAGTTGAGAGA 59.444 43.478 0.00 0.00 0.00 3.10
3044 3274 7.490962 TTCTAACGAAAACACACTCATGAAT 57.509 32.000 0.00 0.00 0.00 2.57
3122 3352 1.759445 CCCTCCACTCCTAGTCACATG 59.241 57.143 0.00 0.00 0.00 3.21
3249 3479 3.623060 ACATTTGTGCTAGCCGTAATCAG 59.377 43.478 13.29 0.00 0.00 2.90
3279 3509 8.629158 ACATCAGTAACATTACAAAGCAAAAGA 58.371 29.630 4.67 0.00 36.12 2.52
3312 3542 4.529716 ACCTTAGGTTCTTTTTGGGTCA 57.470 40.909 0.00 0.00 27.29 4.02
3318 3548 9.341078 TCACGTTAATAACCTTAGGTTCTTTTT 57.659 29.630 21.00 12.19 43.05 1.94
3325 3568 7.983484 CCTAATGTCACGTTAATAACCTTAGGT 59.017 37.037 0.00 0.00 36.27 3.08
3399 3642 3.201045 GCTGTCTAGAAATTCCCTTCCCT 59.799 47.826 0.00 0.00 0.00 4.20
3459 3702 0.253327 GCCTAGAGGTCCTGGGTTTG 59.747 60.000 0.00 0.00 44.66 2.93
3460 3703 0.914902 GGCCTAGAGGTCCTGGGTTT 60.915 60.000 0.00 0.00 44.66 3.27
3469 3712 0.178903 TCCACTTGTGGCCTAGAGGT 60.179 55.000 14.49 0.00 37.57 3.85
3470 3713 0.539051 CTCCACTTGTGGCCTAGAGG 59.461 60.000 14.49 7.24 38.53 3.69
3471 3714 1.480137 CTCTCCACTTGTGGCCTAGAG 59.520 57.143 17.04 17.04 0.00 2.43
3472 3715 1.077169 TCTCTCCACTTGTGGCCTAGA 59.923 52.381 14.49 12.82 0.00 2.43
3473 3716 1.205893 GTCTCTCCACTTGTGGCCTAG 59.794 57.143 14.49 11.00 0.00 3.02
3474 3717 1.203187 AGTCTCTCCACTTGTGGCCTA 60.203 52.381 14.49 2.37 0.00 3.93
3475 3718 0.472734 AGTCTCTCCACTTGTGGCCT 60.473 55.000 14.49 3.21 0.00 5.19
3477 3720 0.972883 AGAGTCTCTCCACTTGTGGC 59.027 55.000 14.49 1.07 0.00 5.01
3478 3721 3.426615 AGTAGAGTCTCTCCACTTGTGG 58.573 50.000 13.24 13.24 28.78 4.17
3479 3722 5.123186 CAGTAGTAGAGTCTCTCCACTTGTG 59.877 48.000 5.39 3.25 34.59 3.33
3480 3723 5.221966 ACAGTAGTAGAGTCTCTCCACTTGT 60.222 44.000 5.39 5.15 34.59 3.16
3481 3724 5.123186 CACAGTAGTAGAGTCTCTCCACTTG 59.877 48.000 5.39 4.56 34.59 3.16
3482 3725 5.250200 CACAGTAGTAGAGTCTCTCCACTT 58.750 45.833 5.39 0.00 34.59 3.16
3483 3726 4.839121 CACAGTAGTAGAGTCTCTCCACT 58.161 47.826 5.39 8.03 36.52 4.00
3484 3727 3.375922 GCACAGTAGTAGAGTCTCTCCAC 59.624 52.174 5.39 0.00 0.00 4.02
3485 3728 3.611970 GCACAGTAGTAGAGTCTCTCCA 58.388 50.000 5.39 0.00 0.00 3.86
3486 3729 2.946990 GGCACAGTAGTAGAGTCTCTCC 59.053 54.545 5.39 0.00 0.00 3.71
3487 3730 3.625764 CAGGCACAGTAGTAGAGTCTCTC 59.374 52.174 5.39 0.00 0.00 3.20
3488 3731 3.616219 CAGGCACAGTAGTAGAGTCTCT 58.384 50.000 7.68 7.68 0.00 3.10
3489 3732 2.685897 CCAGGCACAGTAGTAGAGTCTC 59.314 54.545 0.00 0.00 0.00 3.36
3490 3733 2.729194 CCAGGCACAGTAGTAGAGTCT 58.271 52.381 0.00 0.00 0.00 3.24
3713 3985 3.413558 GACGAATACAATTTGACACGCC 58.586 45.455 2.79 0.00 0.00 5.68
3715 3987 3.482923 CCCGACGAATACAATTTGACACG 60.483 47.826 2.79 6.06 0.00 4.49
3793 4065 0.174389 GGAGAGCGAGTTCAGCATCA 59.826 55.000 0.00 0.00 37.01 3.07
3806 4078 1.911471 CAGAGGGAAAGGGGAGAGC 59.089 63.158 0.00 0.00 0.00 4.09
3896 4169 6.998074 TGACTTAAGACATGTCCAAAATGACT 59.002 34.615 22.21 0.00 36.21 3.41
4014 4294 7.424803 TGACCGCTAATTATGGAAAATCATTG 58.575 34.615 10.10 0.00 0.00 2.82
4278 7203 4.081406 ACATCAGAAATGTAAGCCAAGCA 58.919 39.130 0.00 0.00 0.00 3.91
4291 7216 1.837439 ACCGGCAGGATACATCAGAAA 59.163 47.619 10.86 0.00 41.02 2.52
4386 7311 1.577736 ACAGTCTTATCAGGGCAGCT 58.422 50.000 0.00 0.00 0.00 4.24
4563 7488 2.629617 CCAACTGCCACTCCTCAAATTT 59.370 45.455 0.00 0.00 0.00 1.82
5018 7943 4.833380 ACTACCTCTTCTTGCAACTCTGTA 59.167 41.667 0.00 0.00 0.00 2.74
5040 7965 7.800767 TGATAGAATTACATACGGACGAGTAC 58.199 38.462 0.00 0.00 0.00 2.73
5940 9103 7.592164 TGCGATCACATCATAAGCATTATTTTG 59.408 33.333 0.00 0.00 39.78 2.44
5964 9127 6.808008 ATGATGTATAAAGCACATACCTGC 57.192 37.500 0.00 0.00 36.76 4.85
6480 9643 3.250762 TGTCAACTTCACAGCTATTGCAC 59.749 43.478 1.12 0.00 42.74 4.57
6569 9732 4.281688 ACATGTTGCAGGAAACTTGCTATT 59.718 37.500 0.00 0.00 40.21 1.73
6572 9735 2.034124 ACATGTTGCAGGAAACTTGCT 58.966 42.857 0.00 0.00 40.21 3.91
6876 10089 3.423539 TCATAAACAAGAGCAGCAGGT 57.576 42.857 0.00 0.00 0.00 4.00
6877 10090 4.978083 AATCATAAACAAGAGCAGCAGG 57.022 40.909 0.00 0.00 0.00 4.85
7337 10553 0.037046 CCAGGGCACAAATTCTTGGC 60.037 55.000 0.00 4.65 36.82 4.52
7374 10590 4.487714 TCACCCATTCACCTTATGACTC 57.512 45.455 0.00 0.00 36.92 3.36
7459 10675 1.156736 GTACGAGCAACAATGGCACT 58.843 50.000 0.00 0.00 0.00 4.40
7503 10722 6.036577 TGTATGCTCAACATGTCTAAGTGA 57.963 37.500 0.00 0.00 40.06 3.41
7512 10731 2.427812 TGCCCATTGTATGCTCAACATG 59.572 45.455 0.00 0.00 40.06 3.21
7534 10754 1.632920 TGTGAACCATGGGTGCTCATA 59.367 47.619 18.09 8.52 35.34 2.15
7612 10832 5.921962 ACCTTCTCCAAATGCTTAATTCC 57.078 39.130 0.00 0.00 0.00 3.01
7636 10856 9.585099 TCAAGTTTATGAAATGATTGTTATGCC 57.415 29.630 0.00 0.00 0.00 4.40
7682 10902 2.548904 GAGGATTGATGCTCTGATGTGC 59.451 50.000 5.38 0.00 41.42 4.57
7683 10903 3.139850 GGAGGATTGATGCTCTGATGTG 58.860 50.000 11.50 0.00 43.75 3.21
7718 10938 9.194972 TGGAGCCAAAATGTTAATTATGATGTA 57.805 29.630 0.00 0.00 0.00 2.29
7793 11013 3.048600 AGAACTATGGCCTGCTGGAATA 58.951 45.455 14.77 9.20 34.57 1.75
7823 11043 0.099436 GTGCATCGAAATGGTCAGCC 59.901 55.000 0.00 0.00 33.19 4.85
7923 11143 3.417069 TTGTGTAGGTTGGTCAGATGG 57.583 47.619 0.00 0.00 0.00 3.51
7968 11188 9.708222 CAACTCAAATCAATTAAAGATCTACCG 57.292 33.333 0.00 0.00 0.00 4.02
8083 11303 3.243501 CCACCAATGAGTGTTGTCCAAAG 60.244 47.826 2.24 0.00 35.93 2.77
8133 11353 2.564947 GGAGAGGACTTGAGAAGCTTGA 59.435 50.000 2.10 0.00 0.00 3.02
8207 11463 3.238788 TGGACAAGACACCAGACTCTA 57.761 47.619 0.00 0.00 0.00 2.43
8211 11467 1.160137 GCATGGACAAGACACCAGAC 58.840 55.000 0.00 0.00 39.62 3.51
8285 11574 4.471025 TCTTCAGAATTGATGACCCAGCTA 59.529 41.667 0.00 0.00 33.86 3.32
8304 11593 4.021632 ACGTACAGGTCCCTAAAACTCTTC 60.022 45.833 0.00 0.00 0.00 2.87
8305 11594 3.899980 ACGTACAGGTCCCTAAAACTCTT 59.100 43.478 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.