Multiple sequence alignment - TraesCS3B01G218700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G218700 chr3B 100.000 2417 0 0 1 2417 262079991 262077575 0.000000e+00 4464.0
1 TraesCS3B01G218700 chr3D 93.883 1602 82 10 550 2148 183136219 183134631 0.000000e+00 2401.0
2 TraesCS3B01G218700 chr3D 90.813 283 23 3 2135 2417 183134614 183134335 2.270000e-100 375.0
3 TraesCS3B01G218700 chr3D 92.899 169 11 1 1 168 70280477 70280645 6.670000e-61 244.0
4 TraesCS3B01G218700 chr3A 92.830 1604 78 27 550 2142 233023596 233022019 0.000000e+00 2290.0
5 TraesCS3B01G218700 chr3A 91.166 283 21 3 2135 2417 233021996 233021718 4.880000e-102 381.0
6 TraesCS3B01G218700 chr7D 90.764 314 25 3 237 549 49806903 49806593 1.340000e-112 416.0
7 TraesCS3B01G218700 chr7D 91.111 45 3 1 1573 1616 395082314 395082358 2.600000e-05 60.2
8 TraesCS3B01G218700 chr4D 91.089 303 24 2 248 549 21890502 21890202 8.040000e-110 407.0
9 TraesCS3B01G218700 chr1B 91.060 302 26 1 248 548 484457856 484457555 8.040000e-110 407.0
10 TraesCS3B01G218700 chr1B 94.012 167 10 0 1 167 504951679 504951845 1.110000e-63 254.0
11 TraesCS3B01G218700 chr4B 90.759 303 26 2 250 550 814407 814105 1.040000e-108 403.0
12 TraesCS3B01G218700 chr2D 90.759 303 27 1 248 549 618294475 618294777 1.040000e-108 403.0
13 TraesCS3B01G218700 chr2B 90.492 305 27 2 248 550 798707257 798707561 3.740000e-108 401.0
14 TraesCS3B01G218700 chr2B 94.083 169 8 1 1 167 27547970 27548138 3.080000e-64 255.0
15 TraesCS3B01G218700 chr5D 90.429 303 28 1 248 549 521864290 521863988 4.840000e-107 398.0
16 TraesCS3B01G218700 chr5A 90.228 307 26 3 247 551 170855600 170855296 4.840000e-107 398.0
17 TraesCS3B01G218700 chr6B 90.164 305 28 2 248 550 680182605 680182301 1.740000e-106 396.0
18 TraesCS3B01G218700 chr6B 94.872 39 2 0 1577 1615 507405871 507405833 7.220000e-06 62.1
19 TraesCS3B01G218700 chr1D 93.529 170 11 0 1 170 71764272 71764441 1.110000e-63 254.0
20 TraesCS3B01G218700 chr7A 93.529 170 10 1 1 169 91513465 91513634 3.990000e-63 252.0
21 TraesCS3B01G218700 chr7A 92.899 169 11 1 1 168 303434258 303434426 6.670000e-61 244.0
22 TraesCS3B01G218700 chr5B 93.529 170 10 1 1 169 622202998 622202829 3.990000e-63 252.0
23 TraesCS3B01G218700 chr5B 92.941 170 10 1 1 168 711859386 711859555 1.860000e-61 246.0
24 TraesCS3B01G218700 chr6A 92.529 174 8 4 1 170 384090241 384090069 6.670000e-61 244.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G218700 chr3B 262077575 262079991 2416 True 4464.0 4464 100.000 1 2417 1 chr3B.!!$R1 2416
1 TraesCS3B01G218700 chr3D 183134335 183136219 1884 True 1388.0 2401 92.348 550 2417 2 chr3D.!!$R1 1867
2 TraesCS3B01G218700 chr3A 233021718 233023596 1878 True 1335.5 2290 91.998 550 2417 2 chr3A.!!$R1 1867

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
790 794 0.030638 GGCGCTCAGTGCAAAAGAAA 59.969 50.0 13.36 0.0 41.25 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1974 1992 1.522668 ACCACATGTGTCATGTTCGG 58.477 50.0 23.79 13.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.825377 TCCCGCATACGTGACATG 57.175 55.556 0.00 0.00 37.70 3.21
18 19 2.194460 TCCCGCATACGTGACATGA 58.806 52.632 0.00 0.00 37.70 3.07
19 20 0.750249 TCCCGCATACGTGACATGAT 59.250 50.000 0.00 0.00 37.70 2.45
20 21 1.138069 TCCCGCATACGTGACATGATT 59.862 47.619 0.00 0.00 37.70 2.57
21 22 1.939934 CCCGCATACGTGACATGATTT 59.060 47.619 0.00 0.00 37.70 2.17
22 23 3.127589 CCCGCATACGTGACATGATTTA 58.872 45.455 0.00 0.00 37.70 1.40
23 24 3.558006 CCCGCATACGTGACATGATTTAA 59.442 43.478 0.00 0.00 37.70 1.52
24 25 4.213270 CCCGCATACGTGACATGATTTAAT 59.787 41.667 0.00 0.00 37.70 1.40
25 26 5.277779 CCCGCATACGTGACATGATTTAATT 60.278 40.000 0.00 0.00 37.70 1.40
26 27 5.620822 CCGCATACGTGACATGATTTAATTG 59.379 40.000 0.00 0.00 37.70 2.32
27 28 5.620822 CGCATACGTGACATGATTTAATTGG 59.379 40.000 0.00 0.00 33.53 3.16
28 29 6.510960 CGCATACGTGACATGATTTAATTGGA 60.511 38.462 0.00 0.00 33.53 3.53
29 30 7.192913 GCATACGTGACATGATTTAATTGGAA 58.807 34.615 0.00 0.00 0.00 3.53
30 31 7.165812 GCATACGTGACATGATTTAATTGGAAC 59.834 37.037 0.00 0.00 0.00 3.62
31 32 6.567687 ACGTGACATGATTTAATTGGAACA 57.432 33.333 0.00 0.00 0.00 3.18
45 46 1.273886 TGGAACAAAATAAAGCCCGGC 59.726 47.619 0.00 0.00 31.92 6.13
46 47 1.404986 GGAACAAAATAAAGCCCGGCC 60.405 52.381 5.55 0.00 0.00 6.13
47 48 0.611200 AACAAAATAAAGCCCGGCCC 59.389 50.000 5.55 0.00 0.00 5.80
48 49 1.261938 ACAAAATAAAGCCCGGCCCC 61.262 55.000 5.55 0.00 0.00 5.80
49 50 1.079438 AAAATAAAGCCCGGCCCCA 59.921 52.632 5.55 0.00 0.00 4.96
50 51 1.261938 AAAATAAAGCCCGGCCCCAC 61.262 55.000 5.55 0.00 0.00 4.61
51 52 3.672338 AATAAAGCCCGGCCCCACC 62.672 63.158 5.55 0.00 0.00 4.61
59 60 3.663806 CGGCCCCACCCCCTTAAA 61.664 66.667 0.00 0.00 33.26 1.52
60 61 2.863275 GGCCCCACCCCCTTAAAA 59.137 61.111 0.00 0.00 0.00 1.52
61 62 1.394557 GGCCCCACCCCCTTAAAAT 59.605 57.895 0.00 0.00 0.00 1.82
62 63 0.689745 GGCCCCACCCCCTTAAAATC 60.690 60.000 0.00 0.00 0.00 2.17
63 64 0.041982 GCCCCACCCCCTTAAAATCA 59.958 55.000 0.00 0.00 0.00 2.57
64 65 1.964830 GCCCCACCCCCTTAAAATCAG 60.965 57.143 0.00 0.00 0.00 2.90
65 66 1.342975 CCCCACCCCCTTAAAATCAGG 60.343 57.143 0.00 0.00 0.00 3.86
73 74 3.837355 CCCTTAAAATCAGGGGGAGATG 58.163 50.000 0.00 0.00 46.90 2.90
74 75 3.463329 CCCTTAAAATCAGGGGGAGATGA 59.537 47.826 0.00 0.00 46.90 2.92
75 76 4.106987 CCCTTAAAATCAGGGGGAGATGAT 59.893 45.833 0.00 0.00 46.90 2.45
76 77 5.400653 CCCTTAAAATCAGGGGGAGATGATT 60.401 44.000 0.00 0.00 46.90 2.57
77 78 6.183361 CCCTTAAAATCAGGGGGAGATGATTA 60.183 42.308 1.20 0.00 46.90 1.75
78 79 6.944862 CCTTAAAATCAGGGGGAGATGATTAG 59.055 42.308 1.20 0.00 43.56 1.73
79 80 7.202223 CCTTAAAATCAGGGGGAGATGATTAGA 60.202 40.741 1.20 0.00 43.56 2.10
80 81 6.793518 AAAATCAGGGGGAGATGATTAGAT 57.206 37.500 1.20 0.00 43.56 1.98
81 82 6.793518 AAATCAGGGGGAGATGATTAGATT 57.206 37.500 1.20 0.00 43.56 2.40
82 83 7.895144 AAATCAGGGGGAGATGATTAGATTA 57.105 36.000 1.20 0.00 43.56 1.75
83 84 7.507797 AATCAGGGGGAGATGATTAGATTAG 57.492 40.000 0.00 0.00 42.77 1.73
84 85 6.233045 TCAGGGGGAGATGATTAGATTAGA 57.767 41.667 0.00 0.00 0.00 2.10
85 86 6.634041 TCAGGGGGAGATGATTAGATTAGAA 58.366 40.000 0.00 0.00 0.00 2.10
86 87 7.082316 TCAGGGGGAGATGATTAGATTAGAAA 58.918 38.462 0.00 0.00 0.00 2.52
87 88 7.236432 TCAGGGGGAGATGATTAGATTAGAAAG 59.764 40.741 0.00 0.00 0.00 2.62
88 89 6.503570 AGGGGGAGATGATTAGATTAGAAAGG 59.496 42.308 0.00 0.00 0.00 3.11
89 90 6.502158 GGGGGAGATGATTAGATTAGAAAGGA 59.498 42.308 0.00 0.00 0.00 3.36
90 91 7.017651 GGGGGAGATGATTAGATTAGAAAGGAA 59.982 40.741 0.00 0.00 0.00 3.36
91 92 8.440771 GGGGAGATGATTAGATTAGAAAGGAAA 58.559 37.037 0.00 0.00 0.00 3.13
92 93 9.853177 GGGAGATGATTAGATTAGAAAGGAAAA 57.147 33.333 0.00 0.00 0.00 2.29
119 120 4.749245 AAAAGACAACCGTAGCATGAAG 57.251 40.909 0.00 0.00 0.00 3.02
120 121 3.402628 AAGACAACCGTAGCATGAAGT 57.597 42.857 0.00 0.00 0.00 3.01
121 122 2.688507 AGACAACCGTAGCATGAAGTG 58.311 47.619 0.00 0.00 0.00 3.16
122 123 1.732259 GACAACCGTAGCATGAAGTGG 59.268 52.381 0.00 0.00 0.00 4.00
123 124 1.086696 CAACCGTAGCATGAAGTGGG 58.913 55.000 0.00 0.00 0.00 4.61
124 125 0.981183 AACCGTAGCATGAAGTGGGA 59.019 50.000 0.00 0.00 0.00 4.37
125 126 0.537188 ACCGTAGCATGAAGTGGGAG 59.463 55.000 0.00 0.00 0.00 4.30
126 127 0.811616 CCGTAGCATGAAGTGGGAGC 60.812 60.000 0.00 0.00 0.00 4.70
127 128 0.108186 CGTAGCATGAAGTGGGAGCA 60.108 55.000 0.00 0.00 0.00 4.26
128 129 1.373570 GTAGCATGAAGTGGGAGCAC 58.626 55.000 0.00 0.00 0.00 4.40
129 130 0.108186 TAGCATGAAGTGGGAGCACG 60.108 55.000 0.00 0.00 0.00 5.34
130 131 2.401766 GCATGAAGTGGGAGCACGG 61.402 63.158 0.00 0.00 0.00 4.94
131 132 1.296392 CATGAAGTGGGAGCACGGA 59.704 57.895 0.00 0.00 0.00 4.69
132 133 0.107508 CATGAAGTGGGAGCACGGAT 60.108 55.000 0.00 0.00 0.00 4.18
133 134 0.107508 ATGAAGTGGGAGCACGGATG 60.108 55.000 0.00 0.00 0.00 3.51
134 135 1.450312 GAAGTGGGAGCACGGATGG 60.450 63.158 0.00 0.00 0.00 3.51
135 136 2.876368 GAAGTGGGAGCACGGATGGG 62.876 65.000 0.00 0.00 0.00 4.00
136 137 3.399181 GTGGGAGCACGGATGGGA 61.399 66.667 0.00 0.00 0.00 4.37
137 138 3.083349 TGGGAGCACGGATGGGAG 61.083 66.667 0.00 0.00 0.00 4.30
138 139 4.554036 GGGAGCACGGATGGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
139 140 3.785859 GGAGCACGGATGGGAGCA 61.786 66.667 0.00 0.00 0.00 4.26
140 141 2.507944 GAGCACGGATGGGAGCAT 59.492 61.111 0.00 0.00 0.00 3.79
141 142 1.748403 GAGCACGGATGGGAGCATA 59.252 57.895 0.00 0.00 0.00 3.14
142 143 0.320247 GAGCACGGATGGGAGCATAG 60.320 60.000 0.00 0.00 0.00 2.23
143 144 1.302033 GCACGGATGGGAGCATAGG 60.302 63.158 0.00 0.00 0.00 2.57
144 145 1.758440 GCACGGATGGGAGCATAGGA 61.758 60.000 0.00 0.00 0.00 2.94
145 146 0.758734 CACGGATGGGAGCATAGGAA 59.241 55.000 0.00 0.00 0.00 3.36
146 147 1.051812 ACGGATGGGAGCATAGGAAG 58.948 55.000 0.00 0.00 0.00 3.46
147 148 0.322975 CGGATGGGAGCATAGGAAGG 59.677 60.000 0.00 0.00 0.00 3.46
148 149 0.695347 GGATGGGAGCATAGGAAGGG 59.305 60.000 0.00 0.00 0.00 3.95
149 150 1.734655 GATGGGAGCATAGGAAGGGA 58.265 55.000 0.00 0.00 0.00 4.20
150 151 1.627834 GATGGGAGCATAGGAAGGGAG 59.372 57.143 0.00 0.00 0.00 4.30
151 152 1.056700 TGGGAGCATAGGAAGGGAGC 61.057 60.000 0.00 0.00 0.00 4.70
152 153 1.056700 GGGAGCATAGGAAGGGAGCA 61.057 60.000 0.00 0.00 0.00 4.26
153 154 0.396060 GGAGCATAGGAAGGGAGCAG 59.604 60.000 0.00 0.00 0.00 4.24
154 155 0.396060 GAGCATAGGAAGGGAGCAGG 59.604 60.000 0.00 0.00 0.00 4.85
155 156 1.228094 GCATAGGAAGGGAGCAGGC 60.228 63.158 0.00 0.00 0.00 4.85
156 157 1.987807 GCATAGGAAGGGAGCAGGCA 61.988 60.000 0.00 0.00 0.00 4.75
157 158 0.548031 CATAGGAAGGGAGCAGGCAA 59.452 55.000 0.00 0.00 0.00 4.52
158 159 0.842635 ATAGGAAGGGAGCAGGCAAG 59.157 55.000 0.00 0.00 0.00 4.01
159 160 1.915078 TAGGAAGGGAGCAGGCAAGC 61.915 60.000 0.00 0.00 0.00 4.01
160 161 2.753446 GAAGGGAGCAGGCAAGCC 60.753 66.667 2.02 2.02 34.23 4.35
161 162 4.729918 AAGGGAGCAGGCAAGCCG 62.730 66.667 5.28 2.12 41.95 5.52
164 165 4.496336 GGAGCAGGCAAGCCGGAT 62.496 66.667 15.46 8.74 41.95 4.18
165 166 2.899339 GAGCAGGCAAGCCGGATC 60.899 66.667 15.46 14.32 39.23 3.36
166 167 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
168 169 4.113815 CAGGCAAGCCGGATCCCA 62.114 66.667 5.05 0.00 41.95 4.37
169 170 3.801997 AGGCAAGCCGGATCCCAG 61.802 66.667 5.05 0.00 41.95 4.45
170 171 3.797353 GGCAAGCCGGATCCCAGA 61.797 66.667 5.05 0.00 0.00 3.86
171 172 2.512896 GCAAGCCGGATCCCAGAT 59.487 61.111 5.05 0.00 0.00 2.90
172 173 1.599240 GCAAGCCGGATCCCAGATC 60.599 63.158 5.05 0.00 0.00 2.75
173 174 2.049627 GCAAGCCGGATCCCAGATCT 62.050 60.000 5.05 0.00 0.00 2.75
174 175 0.250209 CAAGCCGGATCCCAGATCTG 60.250 60.000 16.24 16.24 0.00 2.90
175 176 0.692419 AAGCCGGATCCCAGATCTGT 60.692 55.000 21.11 2.79 0.00 3.41
176 177 1.070445 GCCGGATCCCAGATCTGTG 59.930 63.158 21.11 10.57 0.00 3.66
177 178 1.690219 GCCGGATCCCAGATCTGTGT 61.690 60.000 21.11 6.70 0.00 3.72
178 179 0.105593 CCGGATCCCAGATCTGTGTG 59.894 60.000 21.11 9.53 0.00 3.82
179 180 0.531532 CGGATCCCAGATCTGTGTGC 60.532 60.000 21.11 10.57 0.00 4.57
180 181 0.179034 GGATCCCAGATCTGTGTGCC 60.179 60.000 21.11 12.90 0.00 5.01
181 182 0.531532 GATCCCAGATCTGTGTGCCG 60.532 60.000 21.11 4.80 0.00 5.69
182 183 0.977627 ATCCCAGATCTGTGTGCCGA 60.978 55.000 21.11 7.06 0.00 5.54
183 184 1.191489 TCCCAGATCTGTGTGCCGAA 61.191 55.000 21.11 0.00 0.00 4.30
184 185 0.107508 CCCAGATCTGTGTGCCGAAT 60.108 55.000 21.11 0.00 0.00 3.34
185 186 1.293924 CCAGATCTGTGTGCCGAATC 58.706 55.000 21.11 0.00 0.00 2.52
186 187 1.134580 CCAGATCTGTGTGCCGAATCT 60.135 52.381 21.11 0.00 0.00 2.40
187 188 2.200067 CAGATCTGTGTGCCGAATCTC 58.800 52.381 14.95 0.00 0.00 2.75
188 189 1.827344 AGATCTGTGTGCCGAATCTCA 59.173 47.619 0.00 0.00 0.00 3.27
189 190 1.929836 GATCTGTGTGCCGAATCTCAC 59.070 52.381 0.00 0.00 0.00 3.51
190 191 0.678950 TCTGTGTGCCGAATCTCACA 59.321 50.000 2.02 2.02 40.50 3.58
192 193 4.693532 TGTGCCGAATCTCACACC 57.306 55.556 2.02 0.00 38.18 4.16
193 194 1.003839 TGTGCCGAATCTCACACCC 60.004 57.895 2.02 0.00 38.18 4.61
194 195 1.745489 GTGCCGAATCTCACACCCC 60.745 63.158 0.00 0.00 33.63 4.95
195 196 2.220586 TGCCGAATCTCACACCCCA 61.221 57.895 0.00 0.00 0.00 4.96
196 197 1.745489 GCCGAATCTCACACCCCAC 60.745 63.158 0.00 0.00 0.00 4.61
197 198 1.676968 CCGAATCTCACACCCCACA 59.323 57.895 0.00 0.00 0.00 4.17
198 199 0.036164 CCGAATCTCACACCCCACAA 59.964 55.000 0.00 0.00 0.00 3.33
199 200 1.544537 CCGAATCTCACACCCCACAAA 60.545 52.381 0.00 0.00 0.00 2.83
200 201 2.226330 CGAATCTCACACCCCACAAAA 58.774 47.619 0.00 0.00 0.00 2.44
201 202 2.621055 CGAATCTCACACCCCACAAAAA 59.379 45.455 0.00 0.00 0.00 1.94
221 222 4.647424 AAAAATCTCACGCTCCACAAAA 57.353 36.364 0.00 0.00 0.00 2.44
222 223 3.626028 AAATCTCACGCTCCACAAAAC 57.374 42.857 0.00 0.00 0.00 2.43
223 224 1.148310 ATCTCACGCTCCACAAAACG 58.852 50.000 0.00 0.00 0.00 3.60
224 225 0.103390 TCTCACGCTCCACAAAACGA 59.897 50.000 0.00 0.00 0.00 3.85
225 226 0.508641 CTCACGCTCCACAAAACGAG 59.491 55.000 0.00 0.00 0.00 4.18
226 227 0.103390 TCACGCTCCACAAAACGAGA 59.897 50.000 0.00 0.00 0.00 4.04
227 228 1.148310 CACGCTCCACAAAACGAGAT 58.852 50.000 0.00 0.00 0.00 2.75
228 229 1.531149 CACGCTCCACAAAACGAGATT 59.469 47.619 0.00 0.00 0.00 2.40
229 230 2.032030 CACGCTCCACAAAACGAGATTT 60.032 45.455 0.00 0.00 0.00 2.17
230 231 2.223377 ACGCTCCACAAAACGAGATTTC 59.777 45.455 0.00 0.00 0.00 2.17
231 232 2.223144 CGCTCCACAAAACGAGATTTCA 59.777 45.455 0.00 0.00 0.00 2.69
232 233 3.665323 CGCTCCACAAAACGAGATTTCAG 60.665 47.826 0.00 0.00 0.00 3.02
233 234 3.814945 CTCCACAAAACGAGATTTCAGC 58.185 45.455 0.00 0.00 0.00 4.26
234 235 3.476552 TCCACAAAACGAGATTTCAGCT 58.523 40.909 0.00 0.00 0.00 4.24
235 236 3.498397 TCCACAAAACGAGATTTCAGCTC 59.502 43.478 0.00 0.00 0.00 4.09
247 248 1.428448 TTCAGCTCGATGAAACGTGG 58.572 50.000 0.00 0.00 36.28 4.94
248 249 1.014044 TCAGCTCGATGAAACGTGGC 61.014 55.000 0.00 0.00 35.21 5.01
249 250 2.094659 AGCTCGATGAAACGTGGCG 61.095 57.895 0.00 0.00 37.78 5.69
250 251 2.092291 GCTCGATGAAACGTGGCGA 61.092 57.895 0.00 0.00 34.70 5.54
251 252 1.623081 GCTCGATGAAACGTGGCGAA 61.623 55.000 0.00 0.00 34.70 4.70
252 253 0.093026 CTCGATGAAACGTGGCGAAC 59.907 55.000 0.00 0.00 34.70 3.95
253 254 1.131826 CGATGAAACGTGGCGAACC 59.868 57.895 0.00 0.00 0.00 3.62
254 255 1.561717 CGATGAAACGTGGCGAACCA 61.562 55.000 0.00 0.00 46.51 3.67
274 275 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
275 276 2.344592 ACCTGTGGTTGGATGGTTAGA 58.655 47.619 0.00 0.00 27.29 2.10
276 277 2.305927 ACCTGTGGTTGGATGGTTAGAG 59.694 50.000 0.00 0.00 27.29 2.43
277 278 2.356125 CCTGTGGTTGGATGGTTAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
278 279 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
279 280 1.913419 GTGGTTGGATGGTTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
280 281 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
282 283 2.092914 GGTTGGATGGTTAGAGGGACTG 60.093 54.545 0.00 0.00 41.55 3.51
283 284 2.572104 GTTGGATGGTTAGAGGGACTGT 59.428 50.000 0.00 0.00 41.55 3.55
284 285 3.769189 TGGATGGTTAGAGGGACTGTA 57.231 47.619 0.00 0.00 41.55 2.74
285 286 3.643237 TGGATGGTTAGAGGGACTGTAG 58.357 50.000 0.00 0.00 41.55 2.74
286 287 3.012502 TGGATGGTTAGAGGGACTGTAGT 59.987 47.826 0.00 0.00 41.55 2.73
287 288 4.231195 TGGATGGTTAGAGGGACTGTAGTA 59.769 45.833 0.00 0.00 41.55 1.82
288 289 5.103215 TGGATGGTTAGAGGGACTGTAGTAT 60.103 44.000 0.00 0.00 41.55 2.12
289 290 5.839606 GGATGGTTAGAGGGACTGTAGTATT 59.160 44.000 0.00 0.00 41.55 1.89
290 291 6.015265 GGATGGTTAGAGGGACTGTAGTATTC 60.015 46.154 0.00 0.00 41.55 1.75
291 292 5.206587 TGGTTAGAGGGACTGTAGTATTCC 58.793 45.833 0.00 0.00 41.55 3.01
292 293 4.588106 GGTTAGAGGGACTGTAGTATTCCC 59.412 50.000 6.41 6.41 46.22 3.97
295 296 2.912690 GGGACTGTAGTATTCCCAGC 57.087 55.000 8.82 0.00 45.40 4.85
296 297 1.416772 GGGACTGTAGTATTCCCAGCC 59.583 57.143 8.82 0.00 45.40 4.85
297 298 2.116238 GGACTGTAGTATTCCCAGCCA 58.884 52.381 0.00 0.00 0.00 4.75
298 299 2.158943 GGACTGTAGTATTCCCAGCCAC 60.159 54.545 0.00 0.00 0.00 5.01
299 300 1.838077 ACTGTAGTATTCCCAGCCACC 59.162 52.381 0.00 0.00 0.00 4.61
300 301 1.837439 CTGTAGTATTCCCAGCCACCA 59.163 52.381 0.00 0.00 0.00 4.17
301 302 1.837439 TGTAGTATTCCCAGCCACCAG 59.163 52.381 0.00 0.00 0.00 4.00
302 303 1.141053 GTAGTATTCCCAGCCACCAGG 59.859 57.143 0.00 0.00 38.23 4.45
303 304 1.227383 GTATTCCCAGCCACCAGGG 59.773 63.158 0.00 0.00 46.90 4.45
305 306 0.849094 TATTCCCAGCCACCAGGGTT 60.849 55.000 0.00 0.00 45.14 4.11
306 307 2.155197 ATTCCCAGCCACCAGGGTTC 62.155 60.000 0.00 0.00 45.14 3.62
307 308 3.579302 CCCAGCCACCAGGGTTCA 61.579 66.667 0.00 0.00 45.14 3.18
308 309 2.520458 CCAGCCACCAGGGTTCAA 59.480 61.111 0.00 0.00 45.14 2.69
309 310 1.604593 CCAGCCACCAGGGTTCAAG 60.605 63.158 0.00 0.00 45.14 3.02
310 311 1.151450 CAGCCACCAGGGTTCAAGT 59.849 57.895 0.00 0.00 45.14 3.16
311 312 0.890996 CAGCCACCAGGGTTCAAGTC 60.891 60.000 0.00 0.00 45.14 3.01
312 313 1.603739 GCCACCAGGGTTCAAGTCC 60.604 63.158 0.00 0.00 39.65 3.85
313 314 1.074951 CCACCAGGGTTCAAGTCCC 59.925 63.158 0.00 0.00 44.90 4.46
318 319 2.671963 GGGTTCAAGTCCCGGTGC 60.672 66.667 0.00 0.00 35.27 5.01
319 320 2.430367 GGTTCAAGTCCCGGTGCT 59.570 61.111 0.00 0.00 0.00 4.40
320 321 1.671379 GGTTCAAGTCCCGGTGCTC 60.671 63.158 0.00 0.00 0.00 4.26
321 322 2.027625 GTTCAAGTCCCGGTGCTCG 61.028 63.158 0.00 0.00 38.88 5.03
322 323 3.876589 TTCAAGTCCCGGTGCTCGC 62.877 63.158 0.00 0.00 37.59 5.03
323 324 4.680237 CAAGTCCCGGTGCTCGCA 62.680 66.667 0.00 0.00 37.59 5.10
324 325 3.706373 AAGTCCCGGTGCTCGCAT 61.706 61.111 0.00 0.00 37.59 4.73
325 326 3.254024 AAGTCCCGGTGCTCGCATT 62.254 57.895 0.00 0.00 37.59 3.56
326 327 2.746277 GTCCCGGTGCTCGCATTT 60.746 61.111 0.00 0.00 37.59 2.32
327 328 1.448893 GTCCCGGTGCTCGCATTTA 60.449 57.895 0.00 0.00 37.59 1.40
328 329 0.814010 GTCCCGGTGCTCGCATTTAT 60.814 55.000 0.00 0.00 37.59 1.40
329 330 0.107410 TCCCGGTGCTCGCATTTATT 60.107 50.000 0.00 0.00 37.59 1.40
330 331 0.307760 CCCGGTGCTCGCATTTATTC 59.692 55.000 0.00 0.00 37.59 1.75
331 332 0.307760 CCGGTGCTCGCATTTATTCC 59.692 55.000 0.00 0.00 37.59 3.01
332 333 1.299541 CGGTGCTCGCATTTATTCCT 58.700 50.000 0.00 0.00 0.00 3.36
333 334 1.003545 CGGTGCTCGCATTTATTCCTG 60.004 52.381 0.00 0.00 0.00 3.86
334 335 1.334869 GGTGCTCGCATTTATTCCTGG 59.665 52.381 0.00 0.00 0.00 4.45
335 336 2.288666 GTGCTCGCATTTATTCCTGGA 58.711 47.619 0.00 0.00 0.00 3.86
336 337 2.880890 GTGCTCGCATTTATTCCTGGAT 59.119 45.455 0.00 0.00 0.00 3.41
337 338 3.316308 GTGCTCGCATTTATTCCTGGATT 59.684 43.478 0.00 0.00 0.00 3.01
338 339 3.953612 TGCTCGCATTTATTCCTGGATTT 59.046 39.130 0.00 0.00 0.00 2.17
339 340 5.008613 GTGCTCGCATTTATTCCTGGATTTA 59.991 40.000 0.00 0.00 0.00 1.40
340 341 5.769662 TGCTCGCATTTATTCCTGGATTTAT 59.230 36.000 0.00 0.00 0.00 1.40
341 342 6.265196 TGCTCGCATTTATTCCTGGATTTATT 59.735 34.615 0.00 0.00 0.00 1.40
342 343 7.147976 GCTCGCATTTATTCCTGGATTTATTT 58.852 34.615 0.00 0.00 0.00 1.40
343 344 7.327032 GCTCGCATTTATTCCTGGATTTATTTC 59.673 37.037 0.00 0.00 0.00 2.17
344 345 7.359595 TCGCATTTATTCCTGGATTTATTTCG 58.640 34.615 0.00 0.00 0.00 3.46
345 346 6.582295 CGCATTTATTCCTGGATTTATTTCGG 59.418 38.462 0.00 0.00 0.00 4.30
346 347 6.868339 GCATTTATTCCTGGATTTATTTCGGG 59.132 38.462 0.00 0.00 0.00 5.14
347 348 7.255801 GCATTTATTCCTGGATTTATTTCGGGA 60.256 37.037 0.00 0.00 0.00 5.14
348 349 8.806146 CATTTATTCCTGGATTTATTTCGGGAT 58.194 33.333 0.00 0.00 0.00 3.85
349 350 8.776061 TTTATTCCTGGATTTATTTCGGGATT 57.224 30.769 0.00 0.00 0.00 3.01
350 351 8.776061 TTATTCCTGGATTTATTTCGGGATTT 57.224 30.769 0.00 0.00 0.00 2.17
351 352 6.709018 TTCCTGGATTTATTTCGGGATTTC 57.291 37.500 0.00 0.00 0.00 2.17
352 353 6.013554 TCCTGGATTTATTTCGGGATTTCT 57.986 37.500 0.00 0.00 0.00 2.52
353 354 5.827797 TCCTGGATTTATTTCGGGATTTCTG 59.172 40.000 0.00 0.00 0.00 3.02
354 355 5.010012 CCTGGATTTATTTCGGGATTTCTGG 59.990 44.000 0.00 0.00 0.00 3.86
355 356 4.340950 TGGATTTATTTCGGGATTTCTGGC 59.659 41.667 0.00 0.00 0.00 4.85
356 357 4.340950 GGATTTATTTCGGGATTTCTGGCA 59.659 41.667 0.00 0.00 0.00 4.92
357 358 5.163457 GGATTTATTTCGGGATTTCTGGCAA 60.163 40.000 0.00 0.00 0.00 4.52
358 359 5.930837 TTTATTTCGGGATTTCTGGCAAT 57.069 34.783 0.00 0.00 0.00 3.56
359 360 3.806625 ATTTCGGGATTTCTGGCAATG 57.193 42.857 0.00 0.00 0.00 2.82
360 361 0.817013 TTCGGGATTTCTGGCAATGC 59.183 50.000 0.00 0.00 0.00 3.56
361 362 1.064621 CGGGATTTCTGGCAATGCG 59.935 57.895 0.00 0.00 0.00 4.73
362 363 1.227060 GGGATTTCTGGCAATGCGC 60.227 57.895 0.00 0.00 41.28 6.09
363 364 1.512230 GGATTTCTGGCAATGCGCA 59.488 52.632 14.96 14.96 45.17 6.09
364 365 0.103572 GGATTTCTGGCAATGCGCAT 59.896 50.000 19.28 19.28 45.17 4.73
365 366 1.472026 GGATTTCTGGCAATGCGCATT 60.472 47.619 29.36 29.36 45.17 3.56
366 367 1.856597 GATTTCTGGCAATGCGCATTC 59.143 47.619 31.88 23.96 45.17 2.67
367 368 0.602060 TTTCTGGCAATGCGCATTCA 59.398 45.000 31.88 24.97 45.17 2.57
368 369 0.171679 TTCTGGCAATGCGCATTCAG 59.828 50.000 31.24 31.24 45.17 3.02
369 370 0.961857 TCTGGCAATGCGCATTCAGT 60.962 50.000 33.31 16.64 45.17 3.41
370 371 0.800683 CTGGCAATGCGCATTCAGTG 60.801 55.000 31.88 22.40 45.17 3.66
371 372 1.517694 GGCAATGCGCATTCAGTGG 60.518 57.895 31.88 20.95 45.17 4.00
372 373 1.517694 GCAATGCGCATTCAGTGGG 60.518 57.895 31.88 20.24 43.21 4.61
373 374 1.936436 GCAATGCGCATTCAGTGGGA 61.936 55.000 31.88 0.00 43.02 4.37
374 375 0.099968 CAATGCGCATTCAGTGGGAG 59.900 55.000 31.88 14.87 43.02 4.30
375 376 1.033746 AATGCGCATTCAGTGGGAGG 61.034 55.000 29.36 0.00 43.02 4.30
376 377 1.913951 ATGCGCATTCAGTGGGAGGA 61.914 55.000 19.28 0.00 43.02 3.71
377 378 1.817099 GCGCATTCAGTGGGAGGAG 60.817 63.158 0.30 0.00 43.02 3.69
378 379 1.900351 CGCATTCAGTGGGAGGAGA 59.100 57.895 0.00 0.00 43.02 3.71
379 380 0.460987 CGCATTCAGTGGGAGGAGAC 60.461 60.000 0.00 0.00 43.02 3.36
380 381 0.615331 GCATTCAGTGGGAGGAGACA 59.385 55.000 0.00 0.00 0.00 3.41
381 382 1.211457 GCATTCAGTGGGAGGAGACAT 59.789 52.381 0.00 0.00 0.00 3.06
382 383 2.356535 GCATTCAGTGGGAGGAGACATT 60.357 50.000 0.00 0.00 0.00 2.71
383 384 3.539604 CATTCAGTGGGAGGAGACATTC 58.460 50.000 0.00 0.00 0.00 2.67
395 396 2.638329 GACATTCCTGTCGACGACG 58.362 57.895 22.06 16.12 42.24 5.12
396 397 0.167470 GACATTCCTGTCGACGACGA 59.833 55.000 22.06 11.96 42.24 4.20
404 405 4.526770 TCGACGACGAGATGCCTA 57.473 55.556 5.75 0.00 43.81 3.93
405 406 2.012237 TCGACGACGAGATGCCTAC 58.988 57.895 5.75 0.00 43.81 3.18
406 407 1.367782 CGACGACGAGATGCCTACG 60.368 63.158 0.00 0.00 42.66 3.51
407 408 1.009900 GACGACGAGATGCCTACGG 60.010 63.158 0.00 0.00 0.00 4.02
408 409 1.712977 GACGACGAGATGCCTACGGT 61.713 60.000 0.00 0.00 0.00 4.83
409 410 1.298413 CGACGAGATGCCTACGGTG 60.298 63.158 0.00 0.00 0.00 4.94
410 411 1.712018 CGACGAGATGCCTACGGTGA 61.712 60.000 0.00 0.00 0.00 4.02
411 412 0.248539 GACGAGATGCCTACGGTGAC 60.249 60.000 0.00 0.00 0.00 3.67
412 413 0.680280 ACGAGATGCCTACGGTGACT 60.680 55.000 0.00 0.00 0.00 3.41
413 414 0.456221 CGAGATGCCTACGGTGACTT 59.544 55.000 0.00 0.00 0.00 3.01
414 415 1.534175 CGAGATGCCTACGGTGACTTC 60.534 57.143 0.00 0.00 0.00 3.01
415 416 0.456221 AGATGCCTACGGTGACTTCG 59.544 55.000 0.00 0.00 0.00 3.79
416 417 0.172803 GATGCCTACGGTGACTTCGT 59.827 55.000 0.00 0.00 43.64 3.85
417 418 1.402968 GATGCCTACGGTGACTTCGTA 59.597 52.381 0.00 0.00 41.38 3.43
418 419 1.246649 TGCCTACGGTGACTTCGTAA 58.753 50.000 0.00 0.00 41.62 3.18
419 420 1.612950 TGCCTACGGTGACTTCGTAAA 59.387 47.619 0.00 0.00 41.62 2.01
420 421 2.231964 TGCCTACGGTGACTTCGTAAAT 59.768 45.455 0.00 0.00 41.62 1.40
421 422 3.256558 GCCTACGGTGACTTCGTAAATT 58.743 45.455 0.00 0.00 41.62 1.82
422 423 3.681417 GCCTACGGTGACTTCGTAAATTT 59.319 43.478 0.00 0.00 41.62 1.82
423 424 4.152938 GCCTACGGTGACTTCGTAAATTTT 59.847 41.667 0.00 0.00 41.62 1.82
424 425 5.348451 GCCTACGGTGACTTCGTAAATTTTA 59.652 40.000 0.00 0.00 41.62 1.52
425 426 6.128580 GCCTACGGTGACTTCGTAAATTTTAA 60.129 38.462 0.00 0.00 41.62 1.52
426 427 7.571059 GCCTACGGTGACTTCGTAAATTTTAAA 60.571 37.037 0.00 0.00 41.62 1.52
427 428 8.281893 CCTACGGTGACTTCGTAAATTTTAAAA 58.718 33.333 2.51 2.51 41.62 1.52
428 429 9.815936 CTACGGTGACTTCGTAAATTTTAAAAT 57.184 29.630 7.64 7.64 41.62 1.82
429 430 8.496872 ACGGTGACTTCGTAAATTTTAAAATG 57.503 30.769 14.04 2.31 39.22 2.32
430 431 8.344098 ACGGTGACTTCGTAAATTTTAAAATGA 58.656 29.630 14.04 4.61 39.22 2.57
431 432 9.337091 CGGTGACTTCGTAAATTTTAAAATGAT 57.663 29.630 14.04 9.01 0.00 2.45
438 439 8.789881 TCGTAAATTTTAAAATGATATGCCGG 57.210 30.769 14.04 0.00 0.00 6.13
439 440 7.380065 TCGTAAATTTTAAAATGATATGCCGGC 59.620 33.333 22.73 22.73 0.00 6.13
440 441 7.381139 CGTAAATTTTAAAATGATATGCCGGCT 59.619 33.333 29.70 15.76 0.00 5.52
441 442 7.713764 AAATTTTAAAATGATATGCCGGCTC 57.286 32.000 29.70 17.89 0.00 4.70
442 443 5.843673 TTTTAAAATGATATGCCGGCTCA 57.156 34.783 29.70 23.34 0.00 4.26
443 444 5.437289 TTTAAAATGATATGCCGGCTCAG 57.563 39.130 29.70 0.00 0.00 3.35
444 445 2.645838 AAATGATATGCCGGCTCAGT 57.354 45.000 29.70 19.53 0.00 3.41
445 446 2.175878 AATGATATGCCGGCTCAGTC 57.824 50.000 29.70 19.55 0.00 3.51
446 447 1.346062 ATGATATGCCGGCTCAGTCT 58.654 50.000 29.70 5.43 0.00 3.24
447 448 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
448 449 1.069204 TGATATGCCGGCTCAGTCTTC 59.931 52.381 29.70 14.44 0.00 2.87
449 450 0.394565 ATATGCCGGCTCAGTCTTCC 59.605 55.000 29.70 0.00 0.00 3.46
450 451 0.975556 TATGCCGGCTCAGTCTTCCA 60.976 55.000 29.70 2.45 0.00 3.53
451 452 2.125350 GCCGGCTCAGTCTTCCAG 60.125 66.667 22.15 0.00 0.00 3.86
452 453 2.650116 GCCGGCTCAGTCTTCCAGA 61.650 63.158 22.15 0.00 0.00 3.86
453 454 1.515020 CCGGCTCAGTCTTCCAGAG 59.485 63.158 0.00 0.00 0.00 3.35
454 455 1.515020 CGGCTCAGTCTTCCAGAGG 59.485 63.158 0.00 0.00 0.00 3.69
455 456 1.254284 CGGCTCAGTCTTCCAGAGGT 61.254 60.000 0.00 0.00 0.00 3.85
456 457 0.248843 GGCTCAGTCTTCCAGAGGTG 59.751 60.000 0.00 0.00 0.00 4.00
457 458 0.390998 GCTCAGTCTTCCAGAGGTGC 60.391 60.000 0.00 0.00 0.00 5.01
458 459 1.265236 CTCAGTCTTCCAGAGGTGCT 58.735 55.000 0.00 0.00 0.00 4.40
459 460 1.204467 CTCAGTCTTCCAGAGGTGCTC 59.796 57.143 0.00 0.00 0.00 4.26
460 461 0.972134 CAGTCTTCCAGAGGTGCTCA 59.028 55.000 0.00 0.00 32.06 4.26
461 462 1.554160 CAGTCTTCCAGAGGTGCTCAT 59.446 52.381 0.00 0.00 32.06 2.90
462 463 2.762887 CAGTCTTCCAGAGGTGCTCATA 59.237 50.000 0.00 0.00 32.06 2.15
463 464 3.030291 AGTCTTCCAGAGGTGCTCATAG 58.970 50.000 0.00 0.00 32.06 2.23
464 465 3.027412 GTCTTCCAGAGGTGCTCATAGA 58.973 50.000 0.00 0.00 32.06 1.98
465 466 3.068024 GTCTTCCAGAGGTGCTCATAGAG 59.932 52.174 0.00 0.00 32.06 2.43
466 467 2.079170 TCCAGAGGTGCTCATAGAGG 57.921 55.000 0.00 0.00 32.06 3.69
467 468 1.289231 TCCAGAGGTGCTCATAGAGGT 59.711 52.381 0.00 0.00 32.06 3.85
468 469 2.514160 TCCAGAGGTGCTCATAGAGGTA 59.486 50.000 0.00 0.00 32.06 3.08
469 470 2.890311 CCAGAGGTGCTCATAGAGGTAG 59.110 54.545 0.00 0.00 32.06 3.18
470 471 2.295909 CAGAGGTGCTCATAGAGGTAGC 59.704 54.545 0.00 0.00 36.77 3.58
471 472 2.091610 AGAGGTGCTCATAGAGGTAGCA 60.092 50.000 0.00 0.00 43.66 3.49
472 473 2.896685 GAGGTGCTCATAGAGGTAGCAT 59.103 50.000 0.00 0.00 46.99 3.79
473 474 2.632028 AGGTGCTCATAGAGGTAGCATG 59.368 50.000 0.00 0.00 46.99 4.06
474 475 2.366916 GGTGCTCATAGAGGTAGCATGT 59.633 50.000 0.00 0.00 46.99 3.21
475 476 3.388308 GTGCTCATAGAGGTAGCATGTG 58.612 50.000 0.00 0.00 46.99 3.21
476 477 2.224137 TGCTCATAGAGGTAGCATGTGC 60.224 50.000 9.54 9.54 41.15 4.57
486 487 2.715005 GCATGTGCGTGTGTGTGT 59.285 55.556 0.00 0.00 0.00 3.72
487 488 1.063972 GCATGTGCGTGTGTGTGTT 59.936 52.632 0.00 0.00 0.00 3.32
488 489 0.929824 GCATGTGCGTGTGTGTGTTC 60.930 55.000 0.00 0.00 0.00 3.18
489 490 0.376502 CATGTGCGTGTGTGTGTTCA 59.623 50.000 0.00 0.00 0.00 3.18
490 491 1.002576 CATGTGCGTGTGTGTGTTCAT 60.003 47.619 0.00 0.00 0.00 2.57
491 492 1.941325 TGTGCGTGTGTGTGTTCATA 58.059 45.000 0.00 0.00 0.00 2.15
492 493 1.864082 TGTGCGTGTGTGTGTTCATAG 59.136 47.619 0.00 0.00 0.00 2.23
493 494 1.194547 GTGCGTGTGTGTGTTCATAGG 59.805 52.381 0.00 0.00 0.00 2.57
494 495 0.796312 GCGTGTGTGTGTTCATAGGG 59.204 55.000 0.00 0.00 0.00 3.53
495 496 1.438651 CGTGTGTGTGTTCATAGGGG 58.561 55.000 0.00 0.00 0.00 4.79
496 497 1.270625 CGTGTGTGTGTTCATAGGGGT 60.271 52.381 0.00 0.00 0.00 4.95
497 498 2.151202 GTGTGTGTGTTCATAGGGGTG 58.849 52.381 0.00 0.00 0.00 4.61
498 499 2.050918 TGTGTGTGTTCATAGGGGTGA 58.949 47.619 0.00 0.00 0.00 4.02
499 500 2.038426 TGTGTGTGTTCATAGGGGTGAG 59.962 50.000 0.00 0.00 0.00 3.51
500 501 2.038557 GTGTGTGTTCATAGGGGTGAGT 59.961 50.000 0.00 0.00 0.00 3.41
501 502 2.038426 TGTGTGTTCATAGGGGTGAGTG 59.962 50.000 0.00 0.00 0.00 3.51
502 503 2.038557 GTGTGTTCATAGGGGTGAGTGT 59.961 50.000 0.00 0.00 0.00 3.55
503 504 3.259876 GTGTGTTCATAGGGGTGAGTGTA 59.740 47.826 0.00 0.00 0.00 2.90
504 505 4.081087 GTGTGTTCATAGGGGTGAGTGTAT 60.081 45.833 0.00 0.00 0.00 2.29
505 506 4.081142 TGTGTTCATAGGGGTGAGTGTATG 60.081 45.833 0.00 0.00 0.00 2.39
506 507 3.118408 TGTTCATAGGGGTGAGTGTATGC 60.118 47.826 0.00 0.00 0.00 3.14
507 508 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
508 509 1.412710 CATAGGGGTGAGTGTATGCGT 59.587 52.381 0.00 0.00 0.00 5.24
509 510 0.821517 TAGGGGTGAGTGTATGCGTG 59.178 55.000 0.00 0.00 0.00 5.34
510 511 1.192146 AGGGGTGAGTGTATGCGTGT 61.192 55.000 0.00 0.00 0.00 4.49
511 512 1.019278 GGGGTGAGTGTATGCGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
512 513 0.320421 GGGTGAGTGTATGCGTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
513 514 1.067425 GGGTGAGTGTATGCGTGTGTA 60.067 52.381 0.00 0.00 0.00 2.90
514 515 2.418197 GGGTGAGTGTATGCGTGTGTAT 60.418 50.000 0.00 0.00 0.00 2.29
515 516 3.181484 GGGTGAGTGTATGCGTGTGTATA 60.181 47.826 0.00 0.00 0.00 1.47
516 517 3.795101 GGTGAGTGTATGCGTGTGTATAC 59.205 47.826 0.00 0.00 42.15 1.47
517 518 3.481028 GTGAGTGTATGCGTGTGTATACG 59.519 47.826 0.00 0.00 44.00 3.06
518 519 3.374678 TGAGTGTATGCGTGTGTATACGA 59.625 43.478 5.34 0.00 46.46 3.43
519 520 3.948851 AGTGTATGCGTGTGTATACGAG 58.051 45.455 5.34 0.00 46.46 4.18
520 521 2.466571 GTGTATGCGTGTGTATACGAGC 59.533 50.000 5.34 1.98 46.46 5.03
521 522 1.707117 GTATGCGTGTGTATACGAGCG 59.293 52.381 5.34 3.68 46.46 5.03
522 523 1.206745 ATGCGTGTGTATACGAGCGC 61.207 55.000 22.20 22.20 46.46 5.92
523 524 1.585521 GCGTGTGTATACGAGCGCT 60.586 57.895 11.27 11.27 46.46 5.92
524 525 1.138047 GCGTGTGTATACGAGCGCTT 61.138 55.000 13.26 0.00 46.46 4.68
525 526 0.566136 CGTGTGTATACGAGCGCTTG 59.434 55.000 23.34 23.34 46.46 4.01
526 527 0.297820 GTGTGTATACGAGCGCTTGC 59.702 55.000 24.80 8.77 39.58 4.01
527 528 1.137459 TGTGTATACGAGCGCTTGCG 61.137 55.000 24.80 20.18 45.69 4.85
528 529 1.138036 TGTATACGAGCGCTTGCGT 59.862 52.632 24.68 24.68 45.69 5.24
529 530 0.457166 TGTATACGAGCGCTTGCGTT 60.457 50.000 26.11 16.78 45.69 4.84
530 531 0.643820 GTATACGAGCGCTTGCGTTT 59.356 50.000 26.11 20.80 45.69 3.60
531 532 0.643310 TATACGAGCGCTTGCGTTTG 59.357 50.000 26.11 15.96 45.69 2.93
532 533 1.289109 ATACGAGCGCTTGCGTTTGT 61.289 50.000 26.11 23.55 45.69 2.83
533 534 2.153219 TACGAGCGCTTGCGTTTGTG 62.153 55.000 26.11 13.83 45.69 3.33
534 535 3.093449 GAGCGCTTGCGTTTGTGC 61.093 61.111 13.26 0.00 45.69 4.57
535 536 3.805385 GAGCGCTTGCGTTTGTGCA 62.805 57.895 13.26 0.00 45.69 4.57
543 544 2.921634 TGCGTTTGTGCAGTGTTAAA 57.078 40.000 0.00 0.00 40.62 1.52
544 545 3.217599 TGCGTTTGTGCAGTGTTAAAA 57.782 38.095 0.00 0.00 40.62 1.52
545 546 3.575630 TGCGTTTGTGCAGTGTTAAAAA 58.424 36.364 0.00 0.00 40.62 1.94
572 573 3.369756 GCTCGATGAAACGTGTAAATCCA 59.630 43.478 0.00 0.00 34.70 3.41
592 594 5.964758 TCCACCACAATGATAAGAAAATGC 58.035 37.500 0.00 0.00 0.00 3.56
594 596 5.105228 CCACCACAATGATAAGAAAATGCCT 60.105 40.000 0.00 0.00 0.00 4.75
696 698 1.815421 GGTAGTGGATGCCAGTGCG 60.815 63.158 4.09 0.00 39.85 5.34
786 790 1.100463 TTCTGGCGCTCAGTGCAAAA 61.100 50.000 13.36 0.00 43.76 2.44
787 791 1.081641 CTGGCGCTCAGTGCAAAAG 60.082 57.895 13.36 2.38 41.25 2.27
790 794 0.030638 GGCGCTCAGTGCAAAAGAAA 59.969 50.000 13.36 0.00 41.25 2.52
791 795 1.402511 GCGCTCAGTGCAAAAGAAAG 58.597 50.000 4.98 0.00 43.06 2.62
793 797 1.775869 GCTCAGTGCAAAAGAAAGCC 58.224 50.000 0.00 0.00 42.31 4.35
794 798 1.067516 GCTCAGTGCAAAAGAAAGCCA 59.932 47.619 0.00 0.00 42.31 4.75
795 799 2.735823 CTCAGTGCAAAAGAAAGCCAC 58.264 47.619 0.00 0.00 0.00 5.01
796 800 2.098614 TCAGTGCAAAAGAAAGCCACA 58.901 42.857 0.00 0.00 0.00 4.17
797 801 2.694628 TCAGTGCAAAAGAAAGCCACAT 59.305 40.909 0.00 0.00 0.00 3.21
798 802 2.798283 CAGTGCAAAAGAAAGCCACATG 59.202 45.455 0.00 0.00 0.00 3.21
864 868 6.183360 ACCCTCGTCACTTCACACTATATAAC 60.183 42.308 0.00 0.00 0.00 1.89
890 900 1.202533 CCCGTCTGTGACAAACTGAGT 60.203 52.381 0.00 0.00 37.41 3.41
933 943 0.179113 CAGTGCTTGCCAAAAACCGT 60.179 50.000 0.00 0.00 0.00 4.83
974 984 2.365617 TGATAGGCTTCTCGGTCCATTC 59.634 50.000 0.00 0.00 0.00 2.67
1011 1021 2.597903 GTGAAGATGGGGAGGGCC 59.402 66.667 0.00 0.00 0.00 5.80
1260 1270 4.740822 AACGATGGTGGGCAGGCC 62.741 66.667 5.91 5.91 0.00 5.19
1341 1351 0.904865 ACGAGGAGATGTTGGCCAGA 60.905 55.000 5.11 0.00 0.00 3.86
1360 1370 2.032681 GGGTGGACCTGCAGACAC 59.967 66.667 17.39 19.57 35.85 3.67
1430 1440 5.995897 ACCCGCATTAAGAGTTATTATGTCC 59.004 40.000 0.00 0.00 0.00 4.02
1444 1454 1.091771 ATGTCCTGCTGCATGTACGC 61.092 55.000 1.31 0.00 0.00 4.42
1480 1490 1.729284 ACCGCATGTTTAGTTACCCG 58.271 50.000 0.00 0.00 0.00 5.28
1689 1706 7.824779 CCCTATAGCTTGGGATTAAGTATGTTC 59.175 40.741 12.24 0.00 46.15 3.18
1695 1713 7.072454 AGCTTGGGATTAAGTATGTTCCATCTA 59.928 37.037 0.00 0.00 0.00 1.98
1703 1721 9.950496 ATTAAGTATGTTCCATCTATGTCATCC 57.050 33.333 0.00 0.00 0.00 3.51
1822 1840 2.872245 CACCGAGATTCATAATTGGCGT 59.128 45.455 0.00 0.00 0.00 5.68
1824 1842 4.690748 CACCGAGATTCATAATTGGCGTAT 59.309 41.667 0.00 0.00 0.00 3.06
1884 1902 9.443323 TTTTAAATTCATCCACTAATCTCGTCA 57.557 29.630 0.00 0.00 0.00 4.35
1887 1905 5.661056 TTCATCCACTAATCTCGTCAACT 57.339 39.130 0.00 0.00 0.00 3.16
1893 1911 8.543774 CATCCACTAATCTCGTCAACTTTTATC 58.456 37.037 0.00 0.00 0.00 1.75
1915 1933 3.688694 TTACTAGTTGAATGCCCGTGT 57.311 42.857 0.00 0.00 0.00 4.49
1924 1942 1.184322 AATGCCCGTGTTTGCCATGA 61.184 50.000 0.00 0.00 31.20 3.07
1930 1948 3.510719 CCCGTGTTTGCCATGAAATAAG 58.489 45.455 0.00 0.00 31.20 1.73
1994 2012 2.694213 CCGAACATGACACATGTGGTA 58.306 47.619 28.64 17.42 34.19 3.25
2076 2094 6.279513 ACATCTCTCCTTGTAAGAAGACAG 57.720 41.667 0.00 0.00 0.00 3.51
2078 2096 6.667414 ACATCTCTCCTTGTAAGAAGACAGAT 59.333 38.462 0.00 0.00 0.00 2.90
2113 2132 1.202891 CCGAAACCACCCCTCTTTTCT 60.203 52.381 0.00 0.00 0.00 2.52
2118 2137 3.510531 ACCACCCCTCTTTTCTTTCTC 57.489 47.619 0.00 0.00 0.00 2.87
2130 2149 6.841601 TCTTTTCTTTCTCCCTTCATTCTCA 58.158 36.000 0.00 0.00 0.00 3.27
2142 2161 4.443175 CCTTCATTCTCAGCACTATGAGCT 60.443 45.833 0.00 0.00 45.25 4.09
2144 2163 5.859205 TCATTCTCAGCACTATGAGCTAA 57.141 39.130 0.00 0.00 45.25 3.09
2148 2167 5.255710 TCTCAGCACTATGAGCTAACTTC 57.744 43.478 0.00 0.00 45.25 3.01
2149 2168 4.033990 TCAGCACTATGAGCTAACTTCG 57.966 45.455 0.00 0.00 41.14 3.79
2150 2169 3.119291 CAGCACTATGAGCTAACTTCGG 58.881 50.000 0.00 0.00 41.14 4.30
2223 2271 9.734620 TTTTTATCAATGCCAAGATTATCTTCG 57.265 29.630 4.24 0.00 33.78 3.79
2274 2322 4.503741 TGTGAATTGCCTAGAAAAGCAC 57.496 40.909 0.00 0.00 39.10 4.40
2286 2334 5.863935 CCTAGAAAAGCACCATTTACAAAGC 59.136 40.000 0.00 0.00 0.00 3.51
2292 2340 4.006989 AGCACCATTTACAAAGCGTGATA 58.993 39.130 7.68 0.00 0.00 2.15
2307 2355 5.634896 AGCGTGATATTTCTCTTGCTTTTG 58.365 37.500 0.00 0.00 0.00 2.44
2356 2404 7.487822 TTTCATTGGGCCTATTAATCAAACA 57.512 32.000 4.53 0.00 0.00 2.83
2357 2405 7.673641 TTCATTGGGCCTATTAATCAAACAT 57.326 32.000 4.53 0.00 0.00 2.71
2377 2425 5.761205 ACATGGTGCCCAACTATATGTTTA 58.239 37.500 0.00 0.00 36.95 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.581934 AATCATGTCACGTATGCGGG 58.418 50.000 8.39 2.85 44.11 6.13
2 3 4.787381 TTAAATCATGTCACGTATGCGG 57.213 40.909 8.39 0.00 43.45 5.69
3 4 5.620822 CCAATTAAATCATGTCACGTATGCG 59.379 40.000 0.19 0.19 44.93 4.73
4 5 6.724263 TCCAATTAAATCATGTCACGTATGC 58.276 36.000 0.00 0.00 0.00 3.14
5 6 8.180920 TGTTCCAATTAAATCATGTCACGTATG 58.819 33.333 0.00 0.00 0.00 2.39
6 7 8.275015 TGTTCCAATTAAATCATGTCACGTAT 57.725 30.769 0.00 0.00 0.00 3.06
7 8 7.674471 TGTTCCAATTAAATCATGTCACGTA 57.326 32.000 0.00 0.00 0.00 3.57
8 9 6.567687 TGTTCCAATTAAATCATGTCACGT 57.432 33.333 0.00 0.00 0.00 4.49
9 10 7.865875 TTTGTTCCAATTAAATCATGTCACG 57.134 32.000 0.00 0.00 0.00 4.35
16 17 9.225436 GGGCTTTATTTTGTTCCAATTAAATCA 57.775 29.630 0.00 0.00 0.00 2.57
17 18 8.387354 CGGGCTTTATTTTGTTCCAATTAAATC 58.613 33.333 0.00 0.00 0.00 2.17
18 19 7.335673 CCGGGCTTTATTTTGTTCCAATTAAAT 59.664 33.333 0.00 0.00 0.00 1.40
19 20 6.651225 CCGGGCTTTATTTTGTTCCAATTAAA 59.349 34.615 0.00 0.00 0.00 1.52
20 21 6.166982 CCGGGCTTTATTTTGTTCCAATTAA 58.833 36.000 0.00 0.00 0.00 1.40
21 22 5.725362 CCGGGCTTTATTTTGTTCCAATTA 58.275 37.500 0.00 0.00 0.00 1.40
22 23 4.574892 CCGGGCTTTATTTTGTTCCAATT 58.425 39.130 0.00 0.00 0.00 2.32
23 24 3.618752 GCCGGGCTTTATTTTGTTCCAAT 60.619 43.478 12.87 0.00 0.00 3.16
24 25 2.289133 GCCGGGCTTTATTTTGTTCCAA 60.289 45.455 12.87 0.00 0.00 3.53
25 26 1.273886 GCCGGGCTTTATTTTGTTCCA 59.726 47.619 12.87 0.00 0.00 3.53
26 27 1.404986 GGCCGGGCTTTATTTTGTTCC 60.405 52.381 22.87 0.00 0.00 3.62
27 28 1.404986 GGGCCGGGCTTTATTTTGTTC 60.405 52.381 28.80 1.96 0.00 3.18
28 29 0.611200 GGGCCGGGCTTTATTTTGTT 59.389 50.000 28.80 0.00 0.00 2.83
29 30 1.261938 GGGGCCGGGCTTTATTTTGT 61.262 55.000 28.80 0.00 0.00 2.83
30 31 1.261238 TGGGGCCGGGCTTTATTTTG 61.261 55.000 28.80 0.00 0.00 2.44
31 32 1.079438 TGGGGCCGGGCTTTATTTT 59.921 52.632 28.80 0.00 0.00 1.82
32 33 1.684391 GTGGGGCCGGGCTTTATTT 60.684 57.895 28.80 0.00 0.00 1.40
33 34 2.043349 GTGGGGCCGGGCTTTATT 60.043 61.111 28.80 0.00 0.00 1.40
34 35 4.137615 GGTGGGGCCGGGCTTTAT 62.138 66.667 28.80 0.00 0.00 1.40
42 43 2.523740 ATTTTAAGGGGGTGGGGCCG 62.524 60.000 0.00 0.00 38.44 6.13
43 44 0.689745 GATTTTAAGGGGGTGGGGCC 60.690 60.000 0.00 0.00 0.00 5.80
44 45 0.041982 TGATTTTAAGGGGGTGGGGC 59.958 55.000 0.00 0.00 0.00 5.80
45 46 1.342975 CCTGATTTTAAGGGGGTGGGG 60.343 57.143 0.00 0.00 0.00 4.96
46 47 2.159179 CCTGATTTTAAGGGGGTGGG 57.841 55.000 0.00 0.00 0.00 4.61
53 54 4.796110 TCATCTCCCCCTGATTTTAAGG 57.204 45.455 0.00 0.00 34.31 2.69
54 55 7.749666 TCTAATCATCTCCCCCTGATTTTAAG 58.250 38.462 3.40 0.00 41.22 1.85
55 56 7.705912 TCTAATCATCTCCCCCTGATTTTAA 57.294 36.000 3.40 0.00 41.22 1.52
56 57 7.895144 ATCTAATCATCTCCCCCTGATTTTA 57.105 36.000 3.40 0.00 41.22 1.52
57 58 6.793518 ATCTAATCATCTCCCCCTGATTTT 57.206 37.500 3.40 0.00 41.22 1.82
58 59 6.793518 AATCTAATCATCTCCCCCTGATTT 57.206 37.500 3.40 0.00 41.22 2.17
59 60 7.259391 TCTAATCTAATCATCTCCCCCTGATT 58.741 38.462 3.57 3.57 42.92 2.57
60 61 6.820205 TCTAATCTAATCATCTCCCCCTGAT 58.180 40.000 0.00 0.00 33.59 2.90
61 62 6.233045 TCTAATCTAATCATCTCCCCCTGA 57.767 41.667 0.00 0.00 0.00 3.86
62 63 6.942163 TTCTAATCTAATCATCTCCCCCTG 57.058 41.667 0.00 0.00 0.00 4.45
63 64 6.503570 CCTTTCTAATCTAATCATCTCCCCCT 59.496 42.308 0.00 0.00 0.00 4.79
64 65 6.502158 TCCTTTCTAATCTAATCATCTCCCCC 59.498 42.308 0.00 0.00 0.00 5.40
65 66 7.560796 TCCTTTCTAATCTAATCATCTCCCC 57.439 40.000 0.00 0.00 0.00 4.81
66 67 9.853177 TTTTCCTTTCTAATCTAATCATCTCCC 57.147 33.333 0.00 0.00 0.00 4.30
97 98 4.578928 ACTTCATGCTACGGTTGTCTTTTT 59.421 37.500 0.00 0.00 0.00 1.94
98 99 4.024048 CACTTCATGCTACGGTTGTCTTTT 60.024 41.667 0.00 0.00 0.00 2.27
99 100 3.498397 CACTTCATGCTACGGTTGTCTTT 59.502 43.478 0.00 0.00 0.00 2.52
100 101 3.067106 CACTTCATGCTACGGTTGTCTT 58.933 45.455 0.00 0.00 0.00 3.01
101 102 2.612972 CCACTTCATGCTACGGTTGTCT 60.613 50.000 0.00 0.00 0.00 3.41
102 103 1.732259 CCACTTCATGCTACGGTTGTC 59.268 52.381 0.00 0.00 0.00 3.18
103 104 1.610624 CCCACTTCATGCTACGGTTGT 60.611 52.381 0.00 0.00 0.00 3.32
104 105 1.086696 CCCACTTCATGCTACGGTTG 58.913 55.000 0.00 0.00 0.00 3.77
105 106 0.981183 TCCCACTTCATGCTACGGTT 59.019 50.000 0.00 0.00 0.00 4.44
106 107 0.537188 CTCCCACTTCATGCTACGGT 59.463 55.000 0.00 0.00 0.00 4.83
107 108 0.811616 GCTCCCACTTCATGCTACGG 60.812 60.000 0.00 0.00 0.00 4.02
108 109 0.108186 TGCTCCCACTTCATGCTACG 60.108 55.000 0.00 0.00 0.00 3.51
109 110 1.373570 GTGCTCCCACTTCATGCTAC 58.626 55.000 0.00 0.00 38.93 3.58
110 111 0.108186 CGTGCTCCCACTTCATGCTA 60.108 55.000 0.00 0.00 39.86 3.49
111 112 1.376424 CGTGCTCCCACTTCATGCT 60.376 57.895 0.00 0.00 39.86 3.79
112 113 2.401766 CCGTGCTCCCACTTCATGC 61.402 63.158 0.00 0.00 39.86 4.06
113 114 0.107508 ATCCGTGCTCCCACTTCATG 60.108 55.000 0.00 0.00 39.86 3.07
114 115 0.107508 CATCCGTGCTCCCACTTCAT 60.108 55.000 0.00 0.00 39.86 2.57
115 116 1.296392 CATCCGTGCTCCCACTTCA 59.704 57.895 0.00 0.00 39.86 3.02
116 117 1.450312 CCATCCGTGCTCCCACTTC 60.450 63.158 0.00 0.00 39.86 3.01
117 118 2.671070 CCATCCGTGCTCCCACTT 59.329 61.111 0.00 0.00 39.86 3.16
118 119 3.402681 CCCATCCGTGCTCCCACT 61.403 66.667 0.00 0.00 39.86 4.00
119 120 3.391665 CTCCCATCCGTGCTCCCAC 62.392 68.421 0.00 0.00 38.62 4.61
120 121 3.083349 CTCCCATCCGTGCTCCCA 61.083 66.667 0.00 0.00 0.00 4.37
121 122 4.554036 GCTCCCATCCGTGCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
122 123 1.758440 TATGCTCCCATCCGTGCTCC 61.758 60.000 0.00 0.00 32.85 4.70
123 124 0.320247 CTATGCTCCCATCCGTGCTC 60.320 60.000 0.00 0.00 32.85 4.26
124 125 1.750930 CTATGCTCCCATCCGTGCT 59.249 57.895 0.00 0.00 32.85 4.40
125 126 1.302033 CCTATGCTCCCATCCGTGC 60.302 63.158 0.00 0.00 32.85 5.34
126 127 0.758734 TTCCTATGCTCCCATCCGTG 59.241 55.000 0.00 0.00 32.85 4.94
127 128 1.051812 CTTCCTATGCTCCCATCCGT 58.948 55.000 0.00 0.00 32.85 4.69
128 129 0.322975 CCTTCCTATGCTCCCATCCG 59.677 60.000 0.00 0.00 32.85 4.18
129 130 0.695347 CCCTTCCTATGCTCCCATCC 59.305 60.000 0.00 0.00 32.85 3.51
130 131 1.627834 CTCCCTTCCTATGCTCCCATC 59.372 57.143 0.00 0.00 32.85 3.51
131 132 1.739750 CTCCCTTCCTATGCTCCCAT 58.260 55.000 0.00 0.00 35.44 4.00
132 133 1.056700 GCTCCCTTCCTATGCTCCCA 61.057 60.000 0.00 0.00 0.00 4.37
133 134 1.056700 TGCTCCCTTCCTATGCTCCC 61.057 60.000 0.00 0.00 0.00 4.30
134 135 0.396060 CTGCTCCCTTCCTATGCTCC 59.604 60.000 0.00 0.00 0.00 4.70
135 136 0.396060 CCTGCTCCCTTCCTATGCTC 59.604 60.000 0.00 0.00 0.00 4.26
136 137 1.704007 GCCTGCTCCCTTCCTATGCT 61.704 60.000 0.00 0.00 0.00 3.79
137 138 1.228094 GCCTGCTCCCTTCCTATGC 60.228 63.158 0.00 0.00 0.00 3.14
138 139 0.548031 TTGCCTGCTCCCTTCCTATG 59.452 55.000 0.00 0.00 0.00 2.23
139 140 0.842635 CTTGCCTGCTCCCTTCCTAT 59.157 55.000 0.00 0.00 0.00 2.57
140 141 1.915078 GCTTGCCTGCTCCCTTCCTA 61.915 60.000 0.00 0.00 0.00 2.94
141 142 3.085223 CTTGCCTGCTCCCTTCCT 58.915 61.111 0.00 0.00 0.00 3.36
142 143 2.753446 GCTTGCCTGCTCCCTTCC 60.753 66.667 0.00 0.00 0.00 3.46
143 144 2.753446 GGCTTGCCTGCTCCCTTC 60.753 66.667 4.11 0.00 0.00 3.46
144 145 4.729918 CGGCTTGCCTGCTCCCTT 62.730 66.667 10.12 0.00 0.00 3.95
147 148 4.496336 ATCCGGCTTGCCTGCTCC 62.496 66.667 10.12 0.00 0.00 4.70
148 149 2.899339 GATCCGGCTTGCCTGCTC 60.899 66.667 10.12 0.76 0.00 4.26
149 150 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
151 152 4.113815 TGGGATCCGGCTTGCCTG 62.114 66.667 14.28 3.29 0.00 4.85
152 153 3.801997 CTGGGATCCGGCTTGCCT 61.802 66.667 14.28 0.00 0.00 4.75
153 154 3.125376 ATCTGGGATCCGGCTTGCC 62.125 63.158 5.45 1.50 0.00 4.52
154 155 1.599240 GATCTGGGATCCGGCTTGC 60.599 63.158 5.45 0.00 0.00 4.01
155 156 0.250209 CAGATCTGGGATCCGGCTTG 60.250 60.000 15.38 0.00 0.00 4.01
156 157 0.692419 ACAGATCTGGGATCCGGCTT 60.692 55.000 26.08 0.00 34.19 4.35
157 158 1.074926 ACAGATCTGGGATCCGGCT 60.075 57.895 26.08 0.00 34.19 5.52
158 159 1.070445 CACAGATCTGGGATCCGGC 59.930 63.158 26.08 0.00 35.61 6.13
159 160 0.105593 CACACAGATCTGGGATCCGG 59.894 60.000 31.53 10.85 37.45 5.14
160 161 0.531532 GCACACAGATCTGGGATCCG 60.532 60.000 31.53 16.30 37.45 4.18
161 162 0.179034 GGCACACAGATCTGGGATCC 60.179 60.000 31.53 24.33 37.45 3.36
162 163 0.531532 CGGCACACAGATCTGGGATC 60.532 60.000 31.53 19.93 37.45 3.36
163 164 0.977627 TCGGCACACAGATCTGGGAT 60.978 55.000 31.53 12.78 37.45 3.85
164 165 1.191489 TTCGGCACACAGATCTGGGA 61.191 55.000 31.53 12.37 37.45 4.37
165 166 0.107508 ATTCGGCACACAGATCTGGG 60.108 55.000 23.68 23.68 40.54 4.45
166 167 1.134580 AGATTCGGCACACAGATCTGG 60.135 52.381 26.08 16.86 34.19 3.86
167 168 2.200067 GAGATTCGGCACACAGATCTG 58.800 52.381 21.37 21.37 0.00 2.90
168 169 1.827344 TGAGATTCGGCACACAGATCT 59.173 47.619 0.00 0.00 0.00 2.75
169 170 1.929836 GTGAGATTCGGCACACAGATC 59.070 52.381 7.53 0.00 35.19 2.75
170 171 1.276138 TGTGAGATTCGGCACACAGAT 59.724 47.619 10.15 0.00 39.86 2.90
171 172 0.678950 TGTGAGATTCGGCACACAGA 59.321 50.000 10.15 0.00 39.86 3.41
172 173 3.215642 TGTGAGATTCGGCACACAG 57.784 52.632 10.15 0.00 39.86 3.66
175 176 1.003839 GGGTGTGAGATTCGGCACA 60.004 57.895 10.15 10.15 42.25 4.57
176 177 1.745489 GGGGTGTGAGATTCGGCAC 60.745 63.158 5.96 5.96 35.63 5.01
177 178 2.220586 TGGGGTGTGAGATTCGGCA 61.221 57.895 0.00 0.00 0.00 5.69
178 179 1.745489 GTGGGGTGTGAGATTCGGC 60.745 63.158 0.00 0.00 0.00 5.54
179 180 0.036164 TTGTGGGGTGTGAGATTCGG 59.964 55.000 0.00 0.00 0.00 4.30
180 181 1.890876 TTTGTGGGGTGTGAGATTCG 58.109 50.000 0.00 0.00 0.00 3.34
200 201 4.359706 GTTTTGTGGAGCGTGAGATTTTT 58.640 39.130 0.00 0.00 0.00 1.94
201 202 3.548014 CGTTTTGTGGAGCGTGAGATTTT 60.548 43.478 0.00 0.00 0.00 1.82
202 203 2.032030 CGTTTTGTGGAGCGTGAGATTT 60.032 45.455 0.00 0.00 0.00 2.17
203 204 1.531149 CGTTTTGTGGAGCGTGAGATT 59.469 47.619 0.00 0.00 0.00 2.40
204 205 1.148310 CGTTTTGTGGAGCGTGAGAT 58.852 50.000 0.00 0.00 0.00 2.75
205 206 0.103390 TCGTTTTGTGGAGCGTGAGA 59.897 50.000 0.00 0.00 0.00 3.27
206 207 0.508641 CTCGTTTTGTGGAGCGTGAG 59.491 55.000 0.00 0.00 0.00 3.51
207 208 0.103390 TCTCGTTTTGTGGAGCGTGA 59.897 50.000 0.00 0.00 0.00 4.35
208 209 1.148310 ATCTCGTTTTGTGGAGCGTG 58.852 50.000 0.00 0.00 0.00 5.34
209 210 1.878953 AATCTCGTTTTGTGGAGCGT 58.121 45.000 0.00 0.00 0.00 5.07
210 211 2.223144 TGAAATCTCGTTTTGTGGAGCG 59.777 45.455 0.00 0.00 0.00 5.03
211 212 3.814945 CTGAAATCTCGTTTTGTGGAGC 58.185 45.455 0.00 0.00 0.00 4.70
212 213 3.499918 AGCTGAAATCTCGTTTTGTGGAG 59.500 43.478 0.00 0.00 0.00 3.86
213 214 3.476552 AGCTGAAATCTCGTTTTGTGGA 58.523 40.909 0.00 0.00 0.00 4.02
214 215 3.665323 CGAGCTGAAATCTCGTTTTGTGG 60.665 47.826 0.00 0.00 45.86 4.17
215 216 3.473367 CGAGCTGAAATCTCGTTTTGTG 58.527 45.455 0.00 0.00 45.86 3.33
216 217 3.795561 CGAGCTGAAATCTCGTTTTGT 57.204 42.857 0.00 0.00 45.86 2.83
223 224 3.614616 ACGTTTCATCGAGCTGAAATCTC 59.385 43.478 15.24 4.62 44.48 2.75
224 225 3.369147 CACGTTTCATCGAGCTGAAATCT 59.631 43.478 15.24 3.68 44.48 2.40
225 226 3.484229 CCACGTTTCATCGAGCTGAAATC 60.484 47.826 15.24 9.46 44.48 2.17
226 227 2.416547 CCACGTTTCATCGAGCTGAAAT 59.583 45.455 15.24 0.80 44.48 2.17
227 228 1.798223 CCACGTTTCATCGAGCTGAAA 59.202 47.619 9.57 9.57 41.56 2.69
228 229 1.428448 CCACGTTTCATCGAGCTGAA 58.572 50.000 0.00 0.00 33.42 3.02
229 230 1.014044 GCCACGTTTCATCGAGCTGA 61.014 55.000 0.00 0.00 33.59 4.26
230 231 1.421485 GCCACGTTTCATCGAGCTG 59.579 57.895 0.00 0.00 33.59 4.24
231 232 2.094659 CGCCACGTTTCATCGAGCT 61.095 57.895 0.00 0.00 33.95 4.09
232 233 1.623081 TTCGCCACGTTTCATCGAGC 61.623 55.000 0.00 0.00 34.70 5.03
233 234 0.093026 GTTCGCCACGTTTCATCGAG 59.907 55.000 0.00 0.00 34.70 4.04
234 235 1.286354 GGTTCGCCACGTTTCATCGA 61.286 55.000 0.00 0.00 37.19 3.59
235 236 1.131826 GGTTCGCCACGTTTCATCG 59.868 57.895 0.00 0.00 37.19 3.84
236 237 2.240230 TGGTTCGCCACGTTTCATC 58.760 52.632 0.00 0.00 43.56 2.92
237 238 4.466133 TGGTTCGCCACGTTTCAT 57.534 50.000 0.00 0.00 43.56 2.57
255 256 2.305927 CTCTAACCATCCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
256 257 2.356125 CCTCTAACCATCCAACCACAGG 60.356 54.545 0.00 0.00 0.00 4.00
257 258 2.356125 CCCTCTAACCATCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
258 259 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
259 260 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
260 261 1.913419 GTCCCTCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
261 262 2.092914 CAGTCCCTCTAACCATCCAACC 60.093 54.545 0.00 0.00 0.00 3.77
262 263 2.572104 ACAGTCCCTCTAACCATCCAAC 59.428 50.000 0.00 0.00 0.00 3.77
263 264 2.915869 ACAGTCCCTCTAACCATCCAA 58.084 47.619 0.00 0.00 0.00 3.53
264 265 2.642171 ACAGTCCCTCTAACCATCCA 57.358 50.000 0.00 0.00 0.00 3.41
265 266 3.644335 ACTACAGTCCCTCTAACCATCC 58.356 50.000 0.00 0.00 0.00 3.51
266 267 6.015265 GGAATACTACAGTCCCTCTAACCATC 60.015 46.154 0.00 0.00 35.23 3.51
267 268 5.839606 GGAATACTACAGTCCCTCTAACCAT 59.160 44.000 0.00 0.00 35.23 3.55
268 269 5.206587 GGAATACTACAGTCCCTCTAACCA 58.793 45.833 0.00 0.00 35.23 3.67
269 270 5.787953 GGAATACTACAGTCCCTCTAACC 57.212 47.826 0.00 0.00 35.23 2.85
277 278 2.116238 TGGCTGGGAATACTACAGTCC 58.884 52.381 0.00 0.00 40.88 3.85
278 279 2.158943 GGTGGCTGGGAATACTACAGTC 60.159 54.545 0.00 0.00 37.36 3.51
279 280 1.838077 GGTGGCTGGGAATACTACAGT 59.162 52.381 0.00 0.00 34.79 3.55
280 281 1.837439 TGGTGGCTGGGAATACTACAG 59.163 52.381 0.00 0.00 35.40 2.74
281 282 1.837439 CTGGTGGCTGGGAATACTACA 59.163 52.381 0.00 0.00 0.00 2.74
282 283 1.141053 CCTGGTGGCTGGGAATACTAC 59.859 57.143 0.00 0.00 0.00 2.73
283 284 1.507140 CCTGGTGGCTGGGAATACTA 58.493 55.000 0.00 0.00 0.00 1.82
284 285 1.281925 CCCTGGTGGCTGGGAATACT 61.282 60.000 0.00 0.00 46.15 2.12
285 286 1.227383 CCCTGGTGGCTGGGAATAC 59.773 63.158 0.00 0.00 46.15 1.89
286 287 0.849094 AACCCTGGTGGCTGGGAATA 60.849 55.000 4.93 0.00 46.15 1.75
287 288 2.155197 GAACCCTGGTGGCTGGGAAT 62.155 60.000 4.93 0.00 46.15 3.01
288 289 2.780924 AACCCTGGTGGCTGGGAA 60.781 61.111 4.93 0.00 46.15 3.97
289 290 3.256960 GAACCCTGGTGGCTGGGA 61.257 66.667 4.93 0.00 46.15 4.37
291 292 1.604593 CTTGAACCCTGGTGGCTGG 60.605 63.158 0.00 0.00 37.83 4.85
292 293 0.890996 GACTTGAACCCTGGTGGCTG 60.891 60.000 0.00 0.00 37.83 4.85
293 294 1.456287 GACTTGAACCCTGGTGGCT 59.544 57.895 0.00 0.00 37.83 4.75
294 295 1.603739 GGACTTGAACCCTGGTGGC 60.604 63.158 0.00 0.00 37.83 5.01
295 296 1.074951 GGGACTTGAACCCTGGTGG 59.925 63.158 0.00 0.00 43.65 4.61
296 297 1.302511 CGGGACTTGAACCCTGGTG 60.303 63.158 0.00 0.00 44.72 4.17
297 298 2.526046 CCGGGACTTGAACCCTGGT 61.526 63.158 0.00 0.00 44.72 4.00
298 299 2.351276 CCGGGACTTGAACCCTGG 59.649 66.667 0.00 0.00 44.72 4.45
299 300 1.302511 CACCGGGACTTGAACCCTG 60.303 63.158 6.32 0.00 44.72 4.45
300 301 3.157680 CACCGGGACTTGAACCCT 58.842 61.111 6.32 0.00 44.72 4.34
301 302 2.671963 GCACCGGGACTTGAACCC 60.672 66.667 6.32 0.00 43.57 4.11
302 303 1.671379 GAGCACCGGGACTTGAACC 60.671 63.158 6.32 0.00 0.00 3.62
303 304 2.027625 CGAGCACCGGGACTTGAAC 61.028 63.158 6.32 0.00 33.91 3.18
304 305 2.342279 CGAGCACCGGGACTTGAA 59.658 61.111 6.32 0.00 33.91 2.69
305 306 4.373116 GCGAGCACCGGGACTTGA 62.373 66.667 15.50 0.00 39.04 3.02
306 307 3.958147 ATGCGAGCACCGGGACTTG 62.958 63.158 6.32 7.69 39.04 3.16
307 308 2.748058 AAATGCGAGCACCGGGACTT 62.748 55.000 6.32 0.00 39.04 3.01
308 309 1.895020 TAAATGCGAGCACCGGGACT 61.895 55.000 6.32 1.15 39.04 3.85
309 310 0.814010 ATAAATGCGAGCACCGGGAC 60.814 55.000 6.32 0.00 39.04 4.46
310 311 0.107410 AATAAATGCGAGCACCGGGA 60.107 50.000 6.32 0.00 39.04 5.14
311 312 0.307760 GAATAAATGCGAGCACCGGG 59.692 55.000 6.32 0.00 39.04 5.73
312 313 0.307760 GGAATAAATGCGAGCACCGG 59.692 55.000 0.00 0.00 39.04 5.28
313 314 1.003545 CAGGAATAAATGCGAGCACCG 60.004 52.381 0.00 0.00 42.21 4.94
314 315 1.334869 CCAGGAATAAATGCGAGCACC 59.665 52.381 0.00 0.00 0.00 5.01
315 316 2.288666 TCCAGGAATAAATGCGAGCAC 58.711 47.619 0.00 0.00 0.00 4.40
316 317 2.708216 TCCAGGAATAAATGCGAGCA 57.292 45.000 0.00 0.00 0.00 4.26
317 318 4.574599 AAATCCAGGAATAAATGCGAGC 57.425 40.909 0.00 0.00 0.00 5.03
318 319 7.535258 CGAAATAAATCCAGGAATAAATGCGAG 59.465 37.037 0.00 0.00 0.00 5.03
319 320 7.359595 CGAAATAAATCCAGGAATAAATGCGA 58.640 34.615 0.00 0.00 0.00 5.10
320 321 6.582295 CCGAAATAAATCCAGGAATAAATGCG 59.418 38.462 0.00 0.00 0.00 4.73
321 322 6.868339 CCCGAAATAAATCCAGGAATAAATGC 59.132 38.462 0.00 0.00 0.00 3.56
322 323 8.177119 TCCCGAAATAAATCCAGGAATAAATG 57.823 34.615 0.00 0.00 0.00 2.32
323 324 8.956446 ATCCCGAAATAAATCCAGGAATAAAT 57.044 30.769 0.00 0.00 0.00 1.40
324 325 8.776061 AATCCCGAAATAAATCCAGGAATAAA 57.224 30.769 0.00 0.00 0.00 1.40
325 326 8.776061 AAATCCCGAAATAAATCCAGGAATAA 57.224 30.769 0.00 0.00 0.00 1.40
326 327 8.224720 AGAAATCCCGAAATAAATCCAGGAATA 58.775 33.333 0.00 0.00 0.00 1.75
327 328 7.014615 CAGAAATCCCGAAATAAATCCAGGAAT 59.985 37.037 0.00 0.00 0.00 3.01
328 329 6.321181 CAGAAATCCCGAAATAAATCCAGGAA 59.679 38.462 0.00 0.00 0.00 3.36
329 330 5.827797 CAGAAATCCCGAAATAAATCCAGGA 59.172 40.000 0.00 0.00 0.00 3.86
330 331 5.010012 CCAGAAATCCCGAAATAAATCCAGG 59.990 44.000 0.00 0.00 0.00 4.45
331 332 5.507985 GCCAGAAATCCCGAAATAAATCCAG 60.508 44.000 0.00 0.00 0.00 3.86
332 333 4.340950 GCCAGAAATCCCGAAATAAATCCA 59.659 41.667 0.00 0.00 0.00 3.41
333 334 4.340950 TGCCAGAAATCCCGAAATAAATCC 59.659 41.667 0.00 0.00 0.00 3.01
334 335 5.514274 TGCCAGAAATCCCGAAATAAATC 57.486 39.130 0.00 0.00 0.00 2.17
335 336 5.930837 TTGCCAGAAATCCCGAAATAAAT 57.069 34.783 0.00 0.00 0.00 1.40
336 337 5.659463 CATTGCCAGAAATCCCGAAATAAA 58.341 37.500 0.00 0.00 0.00 1.40
337 338 4.441356 GCATTGCCAGAAATCCCGAAATAA 60.441 41.667 0.00 0.00 0.00 1.40
338 339 3.068024 GCATTGCCAGAAATCCCGAAATA 59.932 43.478 0.00 0.00 0.00 1.40
339 340 2.159057 GCATTGCCAGAAATCCCGAAAT 60.159 45.455 0.00 0.00 0.00 2.17
340 341 1.204467 GCATTGCCAGAAATCCCGAAA 59.796 47.619 0.00 0.00 0.00 3.46
341 342 0.817013 GCATTGCCAGAAATCCCGAA 59.183 50.000 0.00 0.00 0.00 4.30
342 343 1.375853 CGCATTGCCAGAAATCCCGA 61.376 55.000 2.41 0.00 0.00 5.14
343 344 1.064621 CGCATTGCCAGAAATCCCG 59.935 57.895 2.41 0.00 0.00 5.14
344 345 1.227060 GCGCATTGCCAGAAATCCC 60.227 57.895 0.30 0.00 37.76 3.85
345 346 0.103572 ATGCGCATTGCCAGAAATCC 59.896 50.000 19.28 0.00 45.60 3.01
346 347 1.856597 GAATGCGCATTGCCAGAAATC 59.143 47.619 38.34 17.96 45.60 2.17
347 348 1.205179 TGAATGCGCATTGCCAGAAAT 59.795 42.857 38.34 13.06 45.60 2.17
348 349 0.602060 TGAATGCGCATTGCCAGAAA 59.398 45.000 38.34 12.78 45.60 2.52
349 350 0.171679 CTGAATGCGCATTGCCAGAA 59.828 50.000 38.34 15.71 45.60 3.02
350 351 0.961857 ACTGAATGCGCATTGCCAGA 60.962 50.000 37.99 20.22 45.60 3.86
351 352 0.800683 CACTGAATGCGCATTGCCAG 60.801 55.000 38.34 35.34 45.60 4.85
352 353 1.213275 CACTGAATGCGCATTGCCA 59.787 52.632 38.34 27.90 45.60 4.92
353 354 1.517694 CCACTGAATGCGCATTGCC 60.518 57.895 38.34 24.99 45.60 4.52
354 355 1.517694 CCCACTGAATGCGCATTGC 60.518 57.895 38.34 27.21 46.70 3.56
355 356 0.099968 CTCCCACTGAATGCGCATTG 59.900 55.000 38.34 26.52 0.00 2.82
356 357 1.033746 CCTCCCACTGAATGCGCATT 61.034 55.000 34.41 34.41 0.00 3.56
357 358 1.452651 CCTCCCACTGAATGCGCAT 60.453 57.895 19.28 19.28 0.00 4.73
358 359 2.046023 CCTCCCACTGAATGCGCA 60.046 61.111 14.96 14.96 0.00 6.09
359 360 1.817099 CTCCTCCCACTGAATGCGC 60.817 63.158 0.00 0.00 0.00 6.09
360 361 0.460987 GTCTCCTCCCACTGAATGCG 60.461 60.000 0.00 0.00 0.00 4.73
361 362 0.615331 TGTCTCCTCCCACTGAATGC 59.385 55.000 0.00 0.00 0.00 3.56
362 363 3.539604 GAATGTCTCCTCCCACTGAATG 58.460 50.000 0.00 0.00 0.00 2.67
363 364 2.507471 GGAATGTCTCCTCCCACTGAAT 59.493 50.000 0.00 0.00 41.61 2.57
364 365 1.909302 GGAATGTCTCCTCCCACTGAA 59.091 52.381 0.00 0.00 41.61 3.02
365 366 1.573108 GGAATGTCTCCTCCCACTGA 58.427 55.000 0.00 0.00 41.61 3.41
374 375 0.809385 TCGTCGACAGGAATGTCTCC 59.191 55.000 17.16 0.00 45.81 3.71
375 376 1.790838 CGTCGTCGACAGGAATGTCTC 60.791 57.143 24.13 0.00 39.71 3.36
376 377 0.168348 CGTCGTCGACAGGAATGTCT 59.832 55.000 24.13 0.00 39.71 3.41
377 378 0.167470 TCGTCGTCGACAGGAATGTC 59.833 55.000 24.13 0.00 41.35 3.06
378 379 0.168348 CTCGTCGTCGACAGGAATGT 59.832 55.000 24.13 0.00 41.35 2.71
379 380 0.446616 TCTCGTCGTCGACAGGAATG 59.553 55.000 24.13 7.68 41.35 2.67
380 381 1.064208 CATCTCGTCGTCGACAGGAAT 59.936 52.381 24.13 9.44 41.35 3.01
381 382 0.446616 CATCTCGTCGTCGACAGGAA 59.553 55.000 24.13 7.57 41.35 3.36
382 383 1.978712 GCATCTCGTCGTCGACAGGA 61.979 60.000 24.13 19.66 41.35 3.86
383 384 1.583967 GCATCTCGTCGTCGACAGG 60.584 63.158 24.13 15.45 41.35 4.00
384 385 1.583967 GGCATCTCGTCGTCGACAG 60.584 63.158 24.13 18.82 41.35 3.51
385 386 0.741927 TAGGCATCTCGTCGTCGACA 60.742 55.000 24.13 10.99 41.35 4.35
386 387 0.316032 GTAGGCATCTCGTCGTCGAC 60.316 60.000 15.51 15.51 41.35 4.20
387 388 1.759293 CGTAGGCATCTCGTCGTCGA 61.759 60.000 4.42 4.42 44.12 4.20
388 389 1.367782 CGTAGGCATCTCGTCGTCG 60.368 63.158 0.00 0.00 38.55 5.12
389 390 1.009900 CCGTAGGCATCTCGTCGTC 60.010 63.158 0.00 0.00 46.14 4.20
390 391 3.108343 CCGTAGGCATCTCGTCGT 58.892 61.111 0.00 0.00 46.14 4.34
402 403 9.815936 ATTTTAAAATTTACGAAGTCACCGTAG 57.184 29.630 7.64 0.00 43.93 3.51
403 404 9.596677 CATTTTAAAATTTACGAAGTCACCGTA 57.403 29.630 10.77 0.00 43.93 4.02
404 405 8.344098 TCATTTTAAAATTTACGAAGTCACCGT 58.656 29.630 10.77 0.00 43.93 4.83
405 406 8.716619 TCATTTTAAAATTTACGAAGTCACCG 57.283 30.769 10.77 0.00 43.93 4.94
412 413 9.239002 CCGGCATATCATTTTAAAATTTACGAA 57.761 29.630 10.77 0.00 0.00 3.85
413 414 7.380065 GCCGGCATATCATTTTAAAATTTACGA 59.620 33.333 24.80 6.00 0.00 3.43
414 415 7.381139 AGCCGGCATATCATTTTAAAATTTACG 59.619 33.333 31.54 8.66 0.00 3.18
415 416 8.587952 AGCCGGCATATCATTTTAAAATTTAC 57.412 30.769 31.54 0.00 0.00 2.01
416 417 8.417106 TGAGCCGGCATATCATTTTAAAATTTA 58.583 29.630 31.54 6.73 0.00 1.40
417 418 7.271511 TGAGCCGGCATATCATTTTAAAATTT 58.728 30.769 31.54 0.00 0.00 1.82
418 419 6.815089 TGAGCCGGCATATCATTTTAAAATT 58.185 32.000 31.54 0.00 0.00 1.82
419 420 6.040842 ACTGAGCCGGCATATCATTTTAAAAT 59.959 34.615 31.54 7.64 0.00 1.82
420 421 5.359576 ACTGAGCCGGCATATCATTTTAAAA 59.640 36.000 31.54 2.51 0.00 1.52
421 422 4.887071 ACTGAGCCGGCATATCATTTTAAA 59.113 37.500 31.54 0.00 0.00 1.52
422 423 4.460263 ACTGAGCCGGCATATCATTTTAA 58.540 39.130 31.54 0.00 0.00 1.52
423 424 4.065088 GACTGAGCCGGCATATCATTTTA 58.935 43.478 31.54 0.00 0.00 1.52
424 425 2.880890 GACTGAGCCGGCATATCATTTT 59.119 45.455 31.54 10.68 0.00 1.82
425 426 2.105477 AGACTGAGCCGGCATATCATTT 59.895 45.455 31.54 13.22 0.00 2.32
426 427 1.696336 AGACTGAGCCGGCATATCATT 59.304 47.619 31.54 17.84 0.00 2.57
427 428 1.346062 AGACTGAGCCGGCATATCAT 58.654 50.000 31.54 13.17 0.00 2.45
428 429 1.069204 GAAGACTGAGCCGGCATATCA 59.931 52.381 31.54 22.44 0.00 2.15
429 430 1.606737 GGAAGACTGAGCCGGCATATC 60.607 57.143 31.54 18.63 0.00 1.63
430 431 0.394565 GGAAGACTGAGCCGGCATAT 59.605 55.000 31.54 8.11 0.00 1.78
431 432 0.975556 TGGAAGACTGAGCCGGCATA 60.976 55.000 31.54 16.21 0.00 3.14
432 433 2.249413 CTGGAAGACTGAGCCGGCAT 62.249 60.000 31.54 14.28 34.07 4.40
433 434 2.922503 TGGAAGACTGAGCCGGCA 60.923 61.111 31.54 7.98 0.00 5.69
434 435 2.125350 CTGGAAGACTGAGCCGGC 60.125 66.667 21.89 21.89 34.07 6.13
435 436 1.515020 CTCTGGAAGACTGAGCCGG 59.485 63.158 0.00 0.00 38.67 6.13
436 437 1.254284 ACCTCTGGAAGACTGAGCCG 61.254 60.000 0.00 0.00 38.67 5.52
437 438 0.248843 CACCTCTGGAAGACTGAGCC 59.751 60.000 0.00 0.00 38.67 4.70
438 439 0.390998 GCACCTCTGGAAGACTGAGC 60.391 60.000 0.00 0.00 38.67 4.26
439 440 1.204467 GAGCACCTCTGGAAGACTGAG 59.796 57.143 0.00 0.00 38.67 3.35
440 441 1.261480 GAGCACCTCTGGAAGACTGA 58.739 55.000 0.00 0.00 38.67 3.41
441 442 0.972134 TGAGCACCTCTGGAAGACTG 59.028 55.000 0.00 0.00 38.67 3.51
442 443 1.949799 ATGAGCACCTCTGGAAGACT 58.050 50.000 0.00 0.00 38.67 3.24
443 444 3.027412 TCTATGAGCACCTCTGGAAGAC 58.973 50.000 0.00 0.00 38.67 3.01
444 445 3.295093 CTCTATGAGCACCTCTGGAAGA 58.705 50.000 0.00 0.00 43.69 2.87
445 446 2.364970 CCTCTATGAGCACCTCTGGAAG 59.635 54.545 0.00 0.00 0.00 3.46
446 447 2.292521 ACCTCTATGAGCACCTCTGGAA 60.293 50.000 0.00 0.00 0.00 3.53
447 448 1.289231 ACCTCTATGAGCACCTCTGGA 59.711 52.381 0.00 0.00 0.00 3.86
448 449 1.786937 ACCTCTATGAGCACCTCTGG 58.213 55.000 0.00 0.00 0.00 3.86
449 450 2.295909 GCTACCTCTATGAGCACCTCTG 59.704 54.545 0.00 0.00 36.20 3.35
450 451 2.091610 TGCTACCTCTATGAGCACCTCT 60.092 50.000 0.00 0.00 41.18 3.69
451 452 2.311463 TGCTACCTCTATGAGCACCTC 58.689 52.381 0.00 0.00 41.18 3.85
452 453 2.461300 TGCTACCTCTATGAGCACCT 57.539 50.000 0.00 0.00 41.18 4.00
456 457 2.411904 GCACATGCTACCTCTATGAGC 58.588 52.381 0.00 0.00 38.21 4.26
457 458 2.035193 ACGCACATGCTACCTCTATGAG 59.965 50.000 1.82 0.00 39.32 2.90
458 459 2.031870 ACGCACATGCTACCTCTATGA 58.968 47.619 1.82 0.00 39.32 2.15
459 460 2.130395 CACGCACATGCTACCTCTATG 58.870 52.381 1.82 0.00 39.32 2.23
460 461 1.757118 ACACGCACATGCTACCTCTAT 59.243 47.619 1.82 0.00 39.32 1.98
461 462 1.135112 CACACGCACATGCTACCTCTA 60.135 52.381 1.82 0.00 39.32 2.43
462 463 0.390340 CACACGCACATGCTACCTCT 60.390 55.000 1.82 0.00 39.32 3.69
463 464 0.670546 ACACACGCACATGCTACCTC 60.671 55.000 1.82 0.00 39.32 3.85
464 465 0.950555 CACACACGCACATGCTACCT 60.951 55.000 1.82 0.00 39.32 3.08
465 466 1.227999 ACACACACGCACATGCTACC 61.228 55.000 1.82 0.00 39.32 3.18
466 467 0.110688 CACACACACGCACATGCTAC 60.111 55.000 1.82 0.00 39.32 3.58
467 468 0.531753 ACACACACACGCACATGCTA 60.532 50.000 1.82 0.00 39.32 3.49
468 469 1.375853 AACACACACACGCACATGCT 61.376 50.000 1.82 0.00 39.32 3.79
469 470 0.929824 GAACACACACACGCACATGC 60.930 55.000 0.00 0.00 37.78 4.06
470 471 0.376502 TGAACACACACACGCACATG 59.623 50.000 0.00 0.00 0.00 3.21
471 472 1.308047 ATGAACACACACACGCACAT 58.692 45.000 0.00 0.00 0.00 3.21
472 473 1.864082 CTATGAACACACACACGCACA 59.136 47.619 0.00 0.00 0.00 4.57
473 474 1.194547 CCTATGAACACACACACGCAC 59.805 52.381 0.00 0.00 0.00 5.34
474 475 1.507562 CCTATGAACACACACACGCA 58.492 50.000 0.00 0.00 0.00 5.24
475 476 0.796312 CCCTATGAACACACACACGC 59.204 55.000 0.00 0.00 0.00 5.34
476 477 1.270625 ACCCCTATGAACACACACACG 60.271 52.381 0.00 0.00 0.00 4.49
477 478 2.151202 CACCCCTATGAACACACACAC 58.849 52.381 0.00 0.00 0.00 3.82
478 479 2.038426 CTCACCCCTATGAACACACACA 59.962 50.000 0.00 0.00 0.00 3.72
479 480 2.038557 ACTCACCCCTATGAACACACAC 59.961 50.000 0.00 0.00 0.00 3.82
480 481 2.038426 CACTCACCCCTATGAACACACA 59.962 50.000 0.00 0.00 0.00 3.72
481 482 2.038557 ACACTCACCCCTATGAACACAC 59.961 50.000 0.00 0.00 0.00 3.82
482 483 2.334977 ACACTCACCCCTATGAACACA 58.665 47.619 0.00 0.00 0.00 3.72
483 484 4.442706 CATACACTCACCCCTATGAACAC 58.557 47.826 0.00 0.00 0.00 3.32
484 485 3.118408 GCATACACTCACCCCTATGAACA 60.118 47.826 0.00 0.00 0.00 3.18
485 486 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
486 487 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
487 488 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
488 489 1.412710 ACGCATACACTCACCCCTATG 59.587 52.381 0.00 0.00 0.00 2.23
489 490 1.412710 CACGCATACACTCACCCCTAT 59.587 52.381 0.00 0.00 0.00 2.57
490 491 0.821517 CACGCATACACTCACCCCTA 59.178 55.000 0.00 0.00 0.00 3.53
491 492 1.192146 ACACGCATACACTCACCCCT 61.192 55.000 0.00 0.00 0.00 4.79
492 493 1.019278 CACACGCATACACTCACCCC 61.019 60.000 0.00 0.00 0.00 4.95
493 494 0.320421 ACACACGCATACACTCACCC 60.320 55.000 0.00 0.00 0.00 4.61
494 495 2.357327 TACACACGCATACACTCACC 57.643 50.000 0.00 0.00 0.00 4.02
495 496 3.481028 CGTATACACACGCATACACTCAC 59.519 47.826 3.32 0.00 34.78 3.51
496 497 3.374678 TCGTATACACACGCATACACTCA 59.625 43.478 3.32 0.00 41.67 3.41
497 498 3.943958 TCGTATACACACGCATACACTC 58.056 45.455 3.32 0.00 41.67 3.51
498 499 3.791122 GCTCGTATACACACGCATACACT 60.791 47.826 3.32 0.00 41.67 3.55
499 500 2.466571 GCTCGTATACACACGCATACAC 59.533 50.000 3.32 0.00 41.67 2.90
500 501 2.723209 GCTCGTATACACACGCATACA 58.277 47.619 3.32 0.00 41.67 2.29
501 502 1.707117 CGCTCGTATACACACGCATAC 59.293 52.381 3.32 0.00 41.67 2.39
502 503 1.922880 GCGCTCGTATACACACGCATA 60.923 52.381 21.49 0.00 45.25 3.14
503 504 1.206745 GCGCTCGTATACACACGCAT 61.207 55.000 21.49 0.00 45.25 4.73
504 505 1.870458 GCGCTCGTATACACACGCA 60.870 57.895 21.49 0.00 45.25 5.24
505 506 1.138047 AAGCGCTCGTATACACACGC 61.138 55.000 12.06 19.79 46.20 5.34
506 507 0.566136 CAAGCGCTCGTATACACACG 59.434 55.000 12.06 4.03 43.28 4.49
507 508 0.297820 GCAAGCGCTCGTATACACAC 59.702 55.000 12.06 0.00 34.30 3.82
508 509 1.137459 CGCAAGCGCTCGTATACACA 61.137 55.000 12.06 0.00 35.30 3.72
509 510 1.138047 ACGCAAGCGCTCGTATACAC 61.138 55.000 20.96 0.00 44.19 2.90
510 511 0.457166 AACGCAAGCGCTCGTATACA 60.457 50.000 22.31 0.00 44.19 2.29
511 512 0.643820 AAACGCAAGCGCTCGTATAC 59.356 50.000 22.31 3.27 44.19 1.47
512 513 0.643310 CAAACGCAAGCGCTCGTATA 59.357 50.000 22.31 0.00 44.19 1.47
513 514 1.289109 ACAAACGCAAGCGCTCGTAT 61.289 50.000 22.31 11.29 44.19 3.06
514 515 1.952133 ACAAACGCAAGCGCTCGTA 60.952 52.632 22.31 0.00 44.19 3.43
515 516 3.269347 ACAAACGCAAGCGCTCGT 61.269 55.556 17.35 17.35 44.19 4.18
516 517 2.792543 CACAAACGCAAGCGCTCG 60.793 61.111 12.06 14.49 44.19 5.03
517 518 3.093449 GCACAAACGCAAGCGCTC 61.093 61.111 12.06 0.00 44.19 5.03
518 519 3.812166 CTGCACAAACGCAAGCGCT 62.812 57.895 15.09 2.64 42.45 5.92
519 520 3.389211 CTGCACAAACGCAAGCGC 61.389 61.111 15.09 0.00 42.45 5.92
520 521 2.024588 ACTGCACAAACGCAAGCG 59.975 55.556 13.50 13.50 42.45 4.68
521 522 0.801836 AACACTGCACAAACGCAAGC 60.802 50.000 0.00 0.00 42.45 4.01
522 523 2.466870 TAACACTGCACAAACGCAAG 57.533 45.000 0.00 0.00 42.45 4.01
523 524 2.921634 TTAACACTGCACAAACGCAA 57.078 40.000 0.00 0.00 42.45 4.85
524 525 2.921634 TTTAACACTGCACAAACGCA 57.078 40.000 0.00 0.00 40.32 5.24
545 546 3.963383 ACACGTTTCATCGAGCTTTTT 57.037 38.095 0.00 0.00 34.70 1.94
546 547 5.412526 TTTACACGTTTCATCGAGCTTTT 57.587 34.783 0.00 0.00 34.70 2.27
547 548 5.390567 GGATTTACACGTTTCATCGAGCTTT 60.391 40.000 0.00 0.00 34.70 3.51
548 549 4.092968 GGATTTACACGTTTCATCGAGCTT 59.907 41.667 0.00 0.00 34.70 3.74
572 573 6.014327 ACAAGGCATTTTCTTATCATTGTGGT 60.014 34.615 0.00 0.00 0.00 4.16
592 594 5.560183 GCAAATATCGTCCGGAATTACAAGG 60.560 44.000 5.23 0.00 0.00 3.61
594 596 4.025563 CGCAAATATCGTCCGGAATTACAA 60.026 41.667 5.23 0.00 0.00 2.41
640 642 1.283181 CCGTGATCTCGATCGGTCC 59.717 63.158 18.20 3.17 40.63 4.46
702 704 2.816692 CTATGTGTGTGTGTGCGCGC 62.817 60.000 27.26 27.26 36.27 6.86
703 705 1.130411 CTATGTGTGTGTGTGCGCG 59.870 57.895 0.00 0.00 0.00 6.86
704 706 1.154413 GCTATGTGTGTGTGTGCGC 60.154 57.895 0.00 0.00 0.00 6.09
705 707 1.130411 CGCTATGTGTGTGTGTGCG 59.870 57.895 0.00 0.00 36.19 5.34
706 708 2.234613 ACGCTATGTGTGTGTGTGC 58.765 52.632 0.00 0.00 38.09 4.57
786 790 1.895238 GGCATGCATGTGGCTTTCT 59.105 52.632 26.79 0.00 45.15 2.52
787 791 4.507879 GGCATGCATGTGGCTTTC 57.492 55.556 26.79 8.94 45.15 2.62
791 795 0.535780 TAGCTAGGCATGCATGTGGC 60.536 55.000 26.79 20.56 44.31 5.01
793 797 1.871676 CACTAGCTAGGCATGCATGTG 59.128 52.381 26.79 12.51 32.94 3.21
794 798 1.487976 ACACTAGCTAGGCATGCATGT 59.512 47.619 26.79 14.26 0.00 3.21
795 799 1.871676 CACACTAGCTAGGCATGCATG 59.128 52.381 24.35 22.70 0.00 4.06
796 800 1.813092 GCACACTAGCTAGGCATGCAT 60.813 52.381 27.76 16.31 32.92 3.96
797 801 0.462581 GCACACTAGCTAGGCATGCA 60.463 55.000 27.76 0.00 32.92 3.96
798 802 0.179062 AGCACACTAGCTAGGCATGC 60.179 55.000 26.45 26.45 44.50 4.06
890 900 2.515398 CAGGTGTGTGGCCTTGGA 59.485 61.111 3.32 0.00 33.31 3.53
958 968 1.587547 GATGAATGGACCGAGAAGCC 58.412 55.000 0.00 0.00 0.00 4.35
1011 1021 0.390472 GGAGAGGAACCGAGCAGTTG 60.390 60.000 0.00 0.00 0.00 3.16
1238 1248 2.750237 GCCCACCATCGTTGGACC 60.750 66.667 19.34 0.90 46.92 4.46
1243 1253 4.740822 GGCCTGCCCACCATCGTT 62.741 66.667 0.00 0.00 0.00 3.85
1260 1270 4.794439 TCCGCCGTCGTCAGCATG 62.794 66.667 0.00 0.00 37.54 4.06
1341 1351 1.770110 TGTCTGCAGGTCCACCCTT 60.770 57.895 15.13 0.00 42.73 3.95
1430 1440 1.325640 CACTTAGCGTACATGCAGCAG 59.674 52.381 0.00 0.00 37.31 4.24
1444 1454 5.478233 TGCGGTTAATTACATGCACTTAG 57.522 39.130 0.00 0.00 35.54 2.18
1689 1706 4.285260 TCAGGTGATGGATGACATAGATGG 59.715 45.833 0.00 0.00 40.72 3.51
1720 1738 3.750371 ACAACCGATTTGGATTGACTCA 58.250 40.909 0.00 0.00 42.00 3.41
1824 1842 4.802051 GGCCCCAATGAGCGCTCA 62.802 66.667 39.63 39.63 44.59 4.26
1887 1905 7.608761 ACGGGCATTCAACTAGTAAAGATAAAA 59.391 33.333 0.00 0.00 0.00 1.52
1893 1911 4.000988 ACACGGGCATTCAACTAGTAAAG 58.999 43.478 0.00 0.00 0.00 1.85
1915 1933 7.271511 ACTGTGTTTTCTTATTTCATGGCAAA 58.728 30.769 0.00 0.00 0.00 3.68
1930 1948 9.312146 CAACAATTGTTTTGTAACTGTGTTTTC 57.688 29.630 21.10 0.00 35.83 2.29
1974 1992 1.522668 ACCACATGTGTCATGTTCGG 58.477 50.000 23.79 13.00 0.00 4.30
1994 2012 7.509141 TCAATTTGTCGTTATATGCATGGAT 57.491 32.000 10.16 4.68 0.00 3.41
2076 2094 7.114388 GTGGTTTCGGTTTGAAAGTTATTGATC 59.886 37.037 0.00 0.00 46.85 2.92
2078 2096 6.267070 GTGGTTTCGGTTTGAAAGTTATTGA 58.733 36.000 0.00 0.00 46.85 2.57
2113 2132 3.328931 AGTGCTGAGAATGAAGGGAGAAA 59.671 43.478 0.00 0.00 0.00 2.52
2118 2137 4.378774 CTCATAGTGCTGAGAATGAAGGG 58.621 47.826 0.00 0.00 44.48 3.95
2130 2149 2.101582 CCCGAAGTTAGCTCATAGTGCT 59.898 50.000 0.00 0.00 43.79 4.40
2274 2322 7.697691 AGAGAAATATCACGCTTTGTAAATGG 58.302 34.615 0.00 0.00 0.00 3.16
2286 2334 7.301054 AGAACAAAAGCAAGAGAAATATCACG 58.699 34.615 0.00 0.00 0.00 4.35
2292 2340 6.927381 CCATGAAGAACAAAAGCAAGAGAAAT 59.073 34.615 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.