Multiple sequence alignment - TraesCS3B01G217200
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G217200
chr3B
100.000
3710
0
0
1
3710
259369644
259373353
0.000000e+00
6852.0
1
TraesCS3B01G217200
chr3D
94.907
3024
133
9
214
3228
181103053
181106064
0.000000e+00
4711.0
2
TraesCS3B01G217200
chr3D
89.697
330
31
3
3230
3557
181106359
181106687
5.730000e-113
418.0
3
TraesCS3B01G217200
chr3D
88.235
119
12
1
6
122
109842454
109842572
1.390000e-29
141.0
4
TraesCS3B01G217200
chr3A
94.000
2500
135
8
740
3228
227923657
227921162
0.000000e+00
3771.0
5
TraesCS3B01G217200
chr3A
96.018
452
15
2
243
693
227924100
227923651
0.000000e+00
732.0
6
TraesCS3B01G217200
chr3A
85.758
330
29
8
3230
3557
227920913
227920600
2.140000e-87
333.0
7
TraesCS3B01G217200
chr3A
94.958
119
5
1
3527
3645
227920550
227920433
6.330000e-43
185.0
8
TraesCS3B01G217200
chr3A
78.814
118
14
5
3380
3486
58949201
58949084
6.650000e-08
69.4
9
TraesCS3B01G217200
chr7D
90.189
2171
192
13
717
2878
576333005
576335163
0.000000e+00
2809.0
10
TraesCS3B01G217200
chr7D
76.675
403
48
26
2987
3381
576335189
576335553
8.180000e-42
182.0
11
TraesCS3B01G217200
chr7D
89.412
85
7
2
354
437
576332553
576332636
5.070000e-19
106.0
12
TraesCS3B01G217200
chr7B
90.923
1994
165
6
740
2727
639083168
639085151
0.000000e+00
2665.0
13
TraesCS3B01G217200
chr7B
90.826
109
10
0
14
122
221894
221786
2.990000e-31
147.0
14
TraesCS3B01G217200
chr7B
74.790
357
53
21
3029
3381
704093201
704092878
3.890000e-25
126.0
15
TraesCS3B01G217200
chr7B
93.617
47
3
0
391
437
639082740
639082786
1.850000e-08
71.3
16
TraesCS3B01G217200
chr7A
89.353
2057
176
29
1094
3143
667475058
667477078
0.000000e+00
2545.0
17
TraesCS3B01G217200
chr7A
91.429
105
9
0
14
118
498582837
498582733
1.070000e-30
145.0
18
TraesCS3B01G217200
chr7A
84.000
125
12
7
3257
3381
667477143
667477259
3.030000e-21
113.0
19
TraesCS3B01G217200
chr7A
100.000
30
0
0
3352
3381
705142176
705142147
5.180000e-04
56.5
20
TraesCS3B01G217200
chr6A
90.741
108
10
0
14
121
605212183
605212076
1.070000e-30
145.0
21
TraesCS3B01G217200
chr6A
90.090
111
9
2
14
123
58764665
58764556
3.860000e-30
143.0
22
TraesCS3B01G217200
chr6A
89.286
112
10
1
6
115
195270216
195270327
5.000000e-29
139.0
23
TraesCS3B01G217200
chr5D
88.696
115
13
0
14
128
412510334
412510220
1.390000e-29
141.0
24
TraesCS3B01G217200
chr2D
88.793
116
11
1
6
119
12588401
12588516
1.390000e-29
141.0
25
TraesCS3B01G217200
chr2D
90.566
106
10
0
14
119
142440982
142441087
1.390000e-29
141.0
26
TraesCS3B01G217200
chr6D
85.714
84
7
5
3536
3615
269124201
269124119
2.370000e-12
84.2
27
TraesCS3B01G217200
chr5A
78.226
124
15
4
3374
3486
567961288
567961166
6.650000e-08
69.4
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G217200
chr3B
259369644
259373353
3709
False
6852.000000
6852
100.000000
1
3710
1
chr3B.!!$F1
3709
1
TraesCS3B01G217200
chr3D
181103053
181106687
3634
False
2564.500000
4711
92.302000
214
3557
2
chr3D.!!$F2
3343
2
TraesCS3B01G217200
chr3A
227920433
227924100
3667
True
1255.250000
3771
92.683500
243
3645
4
chr3A.!!$R2
3402
3
TraesCS3B01G217200
chr7D
576332553
576335553
3000
False
1032.333333
2809
85.425333
354
3381
3
chr7D.!!$F1
3027
4
TraesCS3B01G217200
chr7B
639082740
639085151
2411
False
1368.150000
2665
92.270000
391
2727
2
chr7B.!!$F1
2336
5
TraesCS3B01G217200
chr7A
667475058
667477259
2201
False
1329.000000
2545
86.676500
1094
3381
2
chr7A.!!$F1
2287
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
128
129
0.036306
AACACCCCCTAAGTCAAGCG
59.964
55.0
0.0
0.0
0.00
4.68
F
132
133
0.177373
CCCCCTAAGTCAAGCGGTAC
59.823
60.0
0.0
0.0
0.00
3.34
F
1740
1885
0.313987
CTGTGTCGTGGACAGCACTA
59.686
55.0
0.0
0.0
43.57
2.74
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1809
1954
0.399833
TGTCATTAGGCCTGCACACA
59.600
50.000
17.99
10.43
0.00
3.72
R
2011
2156
1.145738
AGAAACCAGGTCCTTGCACAT
59.854
47.619
0.00
0.00
0.00
3.21
R
3490
3941
0.179084
AGATGGGTACAATCCACGCG
60.179
55.000
3.53
3.53
37.08
6.01
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
18
19
1.538666
CATTGGGAGGGGCCTAAGG
59.461
63.158
0.84
0.00
40.79
2.69
19
20
0.993509
CATTGGGAGGGGCCTAAGGA
60.994
60.000
0.84
0.00
40.89
3.36
20
21
0.994050
ATTGGGAGGGGCCTAAGGAC
60.994
60.000
0.84
0.00
40.79
3.85
21
22
2.132946
TTGGGAGGGGCCTAAGGACT
62.133
60.000
0.84
0.00
31.35
3.85
22
23
1.307953
GGGAGGGGCCTAAGGACTT
60.308
63.158
0.84
0.00
36.66
3.01
23
24
0.919780
GGGAGGGGCCTAAGGACTTT
60.920
60.000
0.84
0.00
36.66
2.66
24
25
1.000496
GGAGGGGCCTAAGGACTTTT
59.000
55.000
0.84
0.00
0.00
2.27
25
26
2.202707
GGAGGGGCCTAAGGACTTTTA
58.797
52.381
0.84
0.00
0.00
1.52
26
27
2.172930
GGAGGGGCCTAAGGACTTTTAG
59.827
54.545
0.84
0.00
0.00
1.85
27
28
1.564818
AGGGGCCTAAGGACTTTTAGC
59.435
52.381
0.84
0.00
30.84
3.09
28
29
1.283905
GGGGCCTAAGGACTTTTAGCA
59.716
52.381
0.84
0.00
30.84
3.49
29
30
2.291346
GGGGCCTAAGGACTTTTAGCAA
60.291
50.000
0.84
0.00
30.84
3.91
30
31
3.427573
GGGCCTAAGGACTTTTAGCAAA
58.572
45.455
0.84
0.00
30.84
3.68
31
32
3.830178
GGGCCTAAGGACTTTTAGCAAAA
59.170
43.478
0.84
0.00
30.84
2.44
32
33
4.282449
GGGCCTAAGGACTTTTAGCAAAAA
59.718
41.667
0.84
0.00
33.58
1.94
65
66
8.496707
AAAAGTTTCATCTTGTTTGATTTGCT
57.503
26.923
0.00
0.00
0.00
3.91
66
67
9.598517
AAAAGTTTCATCTTGTTTGATTTGCTA
57.401
25.926
0.00
0.00
0.00
3.49
67
68
8.807667
AAGTTTCATCTTGTTTGATTTGCTAG
57.192
30.769
0.00
0.00
0.00
3.42
68
69
7.373493
AGTTTCATCTTGTTTGATTTGCTAGG
58.627
34.615
0.00
0.00
0.00
3.02
69
70
5.902613
TCATCTTGTTTGATTTGCTAGGG
57.097
39.130
0.00
0.00
0.00
3.53
70
71
5.569355
TCATCTTGTTTGATTTGCTAGGGA
58.431
37.500
0.00
0.00
0.00
4.20
71
72
5.415701
TCATCTTGTTTGATTTGCTAGGGAC
59.584
40.000
0.00
0.00
0.00
4.46
72
73
4.985538
TCTTGTTTGATTTGCTAGGGACT
58.014
39.130
0.00
0.00
46.37
3.85
73
74
5.385198
TCTTGTTTGATTTGCTAGGGACTT
58.615
37.500
0.00
0.00
41.75
3.01
74
75
5.833131
TCTTGTTTGATTTGCTAGGGACTTT
59.167
36.000
0.00
0.00
41.75
2.66
75
76
5.705609
TGTTTGATTTGCTAGGGACTTTC
57.294
39.130
0.00
0.00
41.75
2.62
76
77
5.385198
TGTTTGATTTGCTAGGGACTTTCT
58.615
37.500
0.00
0.00
41.75
2.52
77
78
5.473504
TGTTTGATTTGCTAGGGACTTTCTC
59.526
40.000
0.00
0.00
41.75
2.87
78
79
5.505181
TTGATTTGCTAGGGACTTTCTCT
57.495
39.130
0.00
0.00
41.75
3.10
79
80
6.620877
TTGATTTGCTAGGGACTTTCTCTA
57.379
37.500
0.00
0.00
41.75
2.43
80
81
6.620877
TGATTTGCTAGGGACTTTCTCTAA
57.379
37.500
0.00
0.00
41.75
2.10
81
82
7.200434
TGATTTGCTAGGGACTTTCTCTAAT
57.800
36.000
0.00
0.00
41.75
1.73
82
83
7.275920
TGATTTGCTAGGGACTTTCTCTAATC
58.724
38.462
0.00
0.00
41.75
1.75
83
84
5.615925
TTGCTAGGGACTTTCTCTAATCC
57.384
43.478
0.00
0.00
41.75
3.01
90
91
4.906618
GGACTTTCTCTAATCCCAACACA
58.093
43.478
0.00
0.00
0.00
3.72
91
92
5.313712
GGACTTTCTCTAATCCCAACACAA
58.686
41.667
0.00
0.00
0.00
3.33
92
93
5.768164
GGACTTTCTCTAATCCCAACACAAA
59.232
40.000
0.00
0.00
0.00
2.83
93
94
6.264518
GGACTTTCTCTAATCCCAACACAAAA
59.735
38.462
0.00
0.00
0.00
2.44
94
95
7.201875
GGACTTTCTCTAATCCCAACACAAAAA
60.202
37.037
0.00
0.00
0.00
1.94
113
114
4.465632
AAAAGTCCCTGAAACCAAACAC
57.534
40.909
0.00
0.00
0.00
3.32
114
115
2.067365
AGTCCCTGAAACCAAACACC
57.933
50.000
0.00
0.00
0.00
4.16
115
116
1.037493
GTCCCTGAAACCAAACACCC
58.963
55.000
0.00
0.00
0.00
4.61
116
117
0.105913
TCCCTGAAACCAAACACCCC
60.106
55.000
0.00
0.00
0.00
4.95
117
118
1.118965
CCCTGAAACCAAACACCCCC
61.119
60.000
0.00
0.00
0.00
5.40
118
119
0.105709
CCTGAAACCAAACACCCCCT
60.106
55.000
0.00
0.00
0.00
4.79
119
120
1.146152
CCTGAAACCAAACACCCCCTA
59.854
52.381
0.00
0.00
0.00
3.53
120
121
2.425102
CCTGAAACCAAACACCCCCTAA
60.425
50.000
0.00
0.00
0.00
2.69
121
122
2.890945
CTGAAACCAAACACCCCCTAAG
59.109
50.000
0.00
0.00
0.00
2.18
122
123
2.245287
TGAAACCAAACACCCCCTAAGT
59.755
45.455
0.00
0.00
0.00
2.24
123
124
2.670019
AACCAAACACCCCCTAAGTC
57.330
50.000
0.00
0.00
0.00
3.01
124
125
1.525175
ACCAAACACCCCCTAAGTCA
58.475
50.000
0.00
0.00
0.00
3.41
125
126
1.854280
ACCAAACACCCCCTAAGTCAA
59.146
47.619
0.00
0.00
0.00
3.18
126
127
2.158519
ACCAAACACCCCCTAAGTCAAG
60.159
50.000
0.00
0.00
0.00
3.02
127
128
1.886542
CAAACACCCCCTAAGTCAAGC
59.113
52.381
0.00
0.00
0.00
4.01
128
129
0.036306
AACACCCCCTAAGTCAAGCG
59.964
55.000
0.00
0.00
0.00
4.68
129
130
1.078426
CACCCCCTAAGTCAAGCGG
60.078
63.158
0.00
0.00
0.00
5.52
130
131
1.538135
ACCCCCTAAGTCAAGCGGT
60.538
57.895
0.00
0.00
0.00
5.68
131
132
0.252375
ACCCCCTAAGTCAAGCGGTA
60.252
55.000
0.00
0.00
0.00
4.02
132
133
0.177373
CCCCCTAAGTCAAGCGGTAC
59.823
60.000
0.00
0.00
0.00
3.34
152
153
4.335647
CAGTGGGCGCCAGTTCCT
62.336
66.667
30.85
12.68
34.53
3.36
153
154
2.606519
AGTGGGCGCCAGTTCCTA
60.607
61.111
30.85
1.53
32.53
2.94
154
155
2.221299
AGTGGGCGCCAGTTCCTAA
61.221
57.895
30.85
0.00
32.53
2.69
155
156
1.302993
GTGGGCGCCAGTTCCTAAA
60.303
57.895
30.85
0.00
32.34
1.85
156
157
1.302993
TGGGCGCCAGTTCCTAAAC
60.303
57.895
30.85
6.94
35.50
2.01
157
158
2.044555
GGGCGCCAGTTCCTAAACC
61.045
63.158
30.85
1.22
35.92
3.27
158
159
2.396157
GGCGCCAGTTCCTAAACCG
61.396
63.158
24.80
0.00
35.92
4.44
159
160
2.396157
GCGCCAGTTCCTAAACCGG
61.396
63.158
0.00
0.00
36.22
5.28
161
162
2.396157
GCCAGTTCCTAAACCGGCG
61.396
63.158
0.00
0.00
46.19
6.46
162
163
2.396157
CCAGTTCCTAAACCGGCGC
61.396
63.158
0.00
0.00
35.92
6.53
163
164
1.669760
CAGTTCCTAAACCGGCGCA
60.670
57.895
10.83
0.00
35.92
6.09
164
165
1.024579
CAGTTCCTAAACCGGCGCAT
61.025
55.000
10.83
0.00
35.92
4.73
165
166
0.538118
AGTTCCTAAACCGGCGCATA
59.462
50.000
10.83
0.00
35.92
3.14
166
167
1.065998
AGTTCCTAAACCGGCGCATAA
60.066
47.619
10.83
0.00
35.92
1.90
167
168
1.738908
GTTCCTAAACCGGCGCATAAA
59.261
47.619
10.83
0.00
0.00
1.40
168
169
1.658994
TCCTAAACCGGCGCATAAAG
58.341
50.000
10.83
0.00
0.00
1.85
169
170
1.065998
TCCTAAACCGGCGCATAAAGT
60.066
47.619
10.83
0.00
0.00
2.66
170
171
1.063469
CCTAAACCGGCGCATAAAGTG
59.937
52.381
10.83
0.00
0.00
3.16
182
183
3.675467
CATAAAGTGCCGTTTAGGAGC
57.325
47.619
0.00
0.00
45.00
4.70
183
184
3.270877
CATAAAGTGCCGTTTAGGAGCT
58.729
45.455
0.00
0.00
45.00
4.09
184
185
1.809684
AAAGTGCCGTTTAGGAGCTC
58.190
50.000
4.71
4.71
45.00
4.09
185
186
0.977395
AAGTGCCGTTTAGGAGCTCT
59.023
50.000
14.64
2.18
45.00
4.09
186
187
0.977395
AGTGCCGTTTAGGAGCTCTT
59.023
50.000
14.64
8.96
45.00
2.85
187
188
1.079503
GTGCCGTTTAGGAGCTCTTG
58.920
55.000
14.64
0.00
45.00
3.02
188
189
0.673644
TGCCGTTTAGGAGCTCTTGC
60.674
55.000
14.64
5.91
45.00
4.01
205
206
2.987547
CTGTGCAGCCCAACAGGG
60.988
66.667
3.83
0.00
46.03
4.45
332
333
1.113517
GCTGCTCCTACGGTCCCATA
61.114
60.000
0.00
0.00
0.00
2.74
340
341
2.326428
CTACGGTCCCATATCCAAGGT
58.674
52.381
0.00
0.00
0.00
3.50
654
673
8.668510
TGATTTGGTATTAGAAAGCATCTCTC
57.331
34.615
0.00
0.00
39.71
3.20
754
891
5.643664
CACAGTACTATTACTAACCGTGCA
58.356
41.667
0.00
0.00
36.31
4.57
813
950
4.609018
AGCTTGGCGTGCAGTCGT
62.609
61.111
4.46
0.00
0.00
4.34
1045
1190
2.280797
GTGGCACGACTTCCTGCA
60.281
61.111
0.00
0.00
34.90
4.41
1055
1200
1.166531
ACTTCCTGCACTTGCCGTTC
61.167
55.000
0.00
0.00
41.18
3.95
1187
1332
1.375523
GCACTCACTTACCACCCGG
60.376
63.158
0.00
0.00
38.77
5.73
1246
1391
2.294233
GCATTGAGAGTTTTGCACCTCA
59.706
45.455
9.24
4.52
35.22
3.86
1331
1476
1.688772
ATGCATGACATCTTGGGAGC
58.311
50.000
0.00
0.00
31.52
4.70
1355
1500
6.252599
TCAGTTAGGAAATCATGGTATGCT
57.747
37.500
0.00
0.00
0.00
3.79
1412
1557
5.576447
AATACAGAGCAAATTTTACCCGG
57.424
39.130
0.00
0.00
0.00
5.73
1665
1810
6.817641
CCTCTCTGATTAGCTTATATGCAAGG
59.182
42.308
12.65
0.00
34.99
3.61
1683
1828
1.230324
GGTGTTGTCAGCTGGAGAAC
58.770
55.000
15.13
14.96
46.89
3.01
1713
1858
4.687483
CAGGTTTTTCAGAACATGCCAATC
59.313
41.667
0.00
0.00
35.01
2.67
1740
1885
0.313987
CTGTGTCGTGGACAGCACTA
59.686
55.000
0.00
0.00
43.57
2.74
1809
1954
1.273759
TTCAGCTGATGAGGCAGTCT
58.726
50.000
19.04
0.00
39.68
3.24
1935
2080
2.607180
GGGTTTTGATTTGTGTGTGCAC
59.393
45.455
10.75
10.75
45.44
4.57
2004
2149
6.811634
ATTGAGGCCCAATCAATATTTGAA
57.188
33.333
15.19
0.00
43.75
2.69
2011
2156
6.991531
GGCCCAATCAATATTTGAAAGCATTA
59.008
34.615
0.00
0.00
43.95
1.90
2078
2223
3.818787
GCATGGCCTTGCTGACCG
61.819
66.667
30.87
1.16
39.57
4.79
2115
2260
3.362870
AAAGAAATGGAGGAGGAGCAG
57.637
47.619
0.00
0.00
0.00
4.24
2211
2356
1.135199
CGCTGCTTCAAGGCAATGATT
60.135
47.619
0.00
0.00
41.94
2.57
2265
2410
3.288964
CTCGTGTATGGTAGACCTCCTT
58.711
50.000
0.00
0.00
36.82
3.36
2358
2503
2.350514
GGTTCTCTGCTGGCTGCT
59.649
61.111
17.45
0.00
43.37
4.24
2433
2578
3.052082
CTGGAGCCAGGTTGTGCG
61.052
66.667
8.69
0.00
40.17
5.34
2457
2602
4.670221
GCAACTCATGTACAGCTAGCAAAC
60.670
45.833
18.83
11.96
0.00
2.93
2559
2704
3.748083
TGGATGCAGCTGGATAGAAATC
58.252
45.455
21.70
8.22
0.00
2.17
2651
2796
0.644331
CTTGACTGCTTGCGATCTCG
59.356
55.000
0.00
0.00
43.27
4.04
2720
2865
6.636454
TGACCCTCAATAGTTCAAGGTAAT
57.364
37.500
0.00
0.00
0.00
1.89
2733
2878
6.429385
AGTTCAAGGTAATTTTGAGCTCTGAG
59.571
38.462
16.19
0.00
40.60
3.35
2754
2899
9.434275
TCTGAGTAAAGTATTGGGAGATGATAA
57.566
33.333
0.00
0.00
0.00
1.75
2757
2904
8.019656
AGTAAAGTATTGGGAGATGATAACGT
57.980
34.615
0.00
0.00
0.00
3.99
2909
3060
1.512926
CAGAGTTTTCCCACCTGACG
58.487
55.000
0.00
0.00
0.00
4.35
2973
3124
4.851558
CGCACTTGATGTTTTAAACTAGGC
59.148
41.667
9.33
3.13
0.00
3.93
2980
3131
7.667043
TGATGTTTTAAACTAGGCTACACTG
57.333
36.000
9.33
0.00
0.00
3.66
2981
3132
7.221450
TGATGTTTTAAACTAGGCTACACTGT
58.779
34.615
9.33
0.00
0.00
3.55
3094
3245
8.555361
GCTTGATTGACTAGATAAGGTTTGATC
58.445
37.037
0.00
0.00
0.00
2.92
3125
3281
5.726980
TTCTCTGCTATTTTGCATTGGTT
57.273
34.783
0.00
0.00
42.48
3.67
3198
3356
6.258230
TCTTGATTGCAACTTATGGTCAAG
57.742
37.500
22.17
22.17
41.28
3.02
3200
3358
5.627499
TGATTGCAACTTATGGTCAAGTC
57.373
39.130
0.00
0.00
37.78
3.01
3211
3369
6.160459
ACTTATGGTCAAGTCAATCCCCTAAT
59.840
38.462
0.00
0.00
33.41
1.73
3214
3372
3.467803
GTCAAGTCAATCCCCTAATCGG
58.532
50.000
0.00
0.00
0.00
4.18
3228
3386
5.648092
CCCCTAATCGGCCTTCTAATAATTG
59.352
44.000
0.00
0.00
0.00
2.32
3267
3718
8.879342
TTCTTGTGGTTATGTTTATGGTTTTG
57.121
30.769
0.00
0.00
0.00
2.44
3283
3734
5.725362
TGGTTTTGTCCTTTTAGTGGTTTG
58.275
37.500
0.00
0.00
0.00
2.93
3285
3736
5.579119
GGTTTTGTCCTTTTAGTGGTTTGTG
59.421
40.000
0.00
0.00
0.00
3.33
3337
3788
8.532186
TCCTATATTTTGCTTATTGCTTTCCA
57.468
30.769
0.00
0.00
43.37
3.53
3338
3789
8.413229
TCCTATATTTTGCTTATTGCTTTCCAC
58.587
33.333
0.00
0.00
43.37
4.02
3397
3848
2.075979
AAGGCTTCGTTCGGTTAGAC
57.924
50.000
0.00
0.00
0.00
2.59
3408
3859
4.105553
GTTAGACCCCACCCCGCC
62.106
72.222
0.00
0.00
0.00
6.13
3441
3892
2.437716
CCCCATGGTTTCGTCCCG
60.438
66.667
11.73
0.00
0.00
5.14
3445
3896
3.642503
ATGGTTTCGTCCCGCCCA
61.643
61.111
0.00
0.00
0.00
5.36
3457
3908
3.411517
CGCCCAGGGTTCCATCCT
61.412
66.667
7.55
0.00
34.39
3.24
3462
3913
1.221840
CAGGGTTCCATCCTGGTCG
59.778
63.158
2.40
0.00
45.95
4.79
3490
3941
1.239296
GGTGTGTTCGGTTAAGCCCC
61.239
60.000
0.00
0.00
0.00
5.80
3503
3954
3.199891
GCCCCGCGTGGATTGTAC
61.200
66.667
18.79
0.00
37.49
2.90
3506
3957
2.266372
CCGCGTGGATTGTACCCA
59.734
61.111
10.20
0.00
37.49
4.51
3508
3959
1.157870
CCGCGTGGATTGTACCCATC
61.158
60.000
10.20
0.00
37.49
3.51
3511
3962
1.134521
GCGTGGATTGTACCCATCTCA
60.135
52.381
0.00
0.00
35.91
3.27
3512
3963
2.485479
GCGTGGATTGTACCCATCTCAT
60.485
50.000
0.00
0.00
35.91
2.90
3515
3966
4.931601
CGTGGATTGTACCCATCTCATATG
59.068
45.833
0.00
0.00
35.91
1.78
3516
3967
5.279456
CGTGGATTGTACCCATCTCATATGA
60.279
44.000
5.07
5.07
35.91
2.15
3518
3969
7.170965
GTGGATTGTACCCATCTCATATGAAT
58.829
38.462
6.90
1.17
35.91
2.57
3523
3976
7.806409
TGTACCCATCTCATATGAATTGTTG
57.194
36.000
6.90
1.35
0.00
3.33
3575
4108
5.376854
ACACAGAGCACATTGGTAAATTC
57.623
39.130
0.00
0.00
0.00
2.17
3577
4110
5.536161
ACACAGAGCACATTGGTAAATTCTT
59.464
36.000
0.00
0.00
0.00
2.52
3578
4111
6.040842
ACACAGAGCACATTGGTAAATTCTTT
59.959
34.615
0.00
0.00
0.00
2.52
3642
4175
2.701073
GCATCAGCATATGAACTGCC
57.299
50.000
6.97
0.00
42.53
4.85
3645
4178
3.366070
GCATCAGCATATGAACTGCCATC
60.366
47.826
6.97
0.00
42.53
3.51
3646
4179
3.564053
TCAGCATATGAACTGCCATCA
57.436
42.857
6.97
0.00
40.56
3.07
3647
4180
3.888583
TCAGCATATGAACTGCCATCAA
58.111
40.909
6.97
0.00
40.56
2.57
3648
4181
4.271661
TCAGCATATGAACTGCCATCAAA
58.728
39.130
6.97
0.00
40.56
2.69
3649
4182
4.096833
TCAGCATATGAACTGCCATCAAAC
59.903
41.667
6.97
0.00
40.56
2.93
3650
4183
3.382546
AGCATATGAACTGCCATCAAACC
59.617
43.478
6.97
0.00
40.56
3.27
3651
4184
3.491447
GCATATGAACTGCCATCAAACCC
60.491
47.826
6.97
0.00
33.44
4.11
3652
4185
2.307496
ATGAACTGCCATCAAACCCA
57.693
45.000
0.00
0.00
0.00
4.51
3653
4186
2.079170
TGAACTGCCATCAAACCCAA
57.921
45.000
0.00
0.00
0.00
4.12
3654
4187
2.607499
TGAACTGCCATCAAACCCAAT
58.393
42.857
0.00
0.00
0.00
3.16
3655
4188
3.772387
TGAACTGCCATCAAACCCAATA
58.228
40.909
0.00
0.00
0.00
1.90
3656
4189
4.155709
TGAACTGCCATCAAACCCAATAA
58.844
39.130
0.00
0.00
0.00
1.40
3657
4190
4.220382
TGAACTGCCATCAAACCCAATAAG
59.780
41.667
0.00
0.00
0.00
1.73
3658
4191
4.046286
ACTGCCATCAAACCCAATAAGA
57.954
40.909
0.00
0.00
0.00
2.10
3659
4192
4.019174
ACTGCCATCAAACCCAATAAGAG
58.981
43.478
0.00
0.00
0.00
2.85
3660
4193
4.019174
CTGCCATCAAACCCAATAAGAGT
58.981
43.478
0.00
0.00
0.00
3.24
3661
4194
4.016444
TGCCATCAAACCCAATAAGAGTC
58.984
43.478
0.00
0.00
0.00
3.36
3662
4195
3.065371
GCCATCAAACCCAATAAGAGTCG
59.935
47.826
0.00
0.00
0.00
4.18
3663
4196
3.065371
CCATCAAACCCAATAAGAGTCGC
59.935
47.826
0.00
0.00
0.00
5.19
3664
4197
2.343101
TCAAACCCAATAAGAGTCGCG
58.657
47.619
0.00
0.00
0.00
5.87
3665
4198
2.073816
CAAACCCAATAAGAGTCGCGT
58.926
47.619
5.77
0.00
0.00
6.01
3666
4199
1.722011
AACCCAATAAGAGTCGCGTG
58.278
50.000
5.77
0.00
0.00
5.34
3667
4200
0.892755
ACCCAATAAGAGTCGCGTGA
59.107
50.000
5.77
0.00
0.00
4.35
3668
4201
1.274167
ACCCAATAAGAGTCGCGTGAA
59.726
47.619
5.77
0.00
0.00
3.18
3669
4202
2.093658
ACCCAATAAGAGTCGCGTGAAT
60.094
45.455
5.77
0.00
0.00
2.57
3670
4203
2.285220
CCCAATAAGAGTCGCGTGAATG
59.715
50.000
2.56
0.00
0.00
2.67
3671
4204
2.285220
CCAATAAGAGTCGCGTGAATGG
59.715
50.000
2.56
0.00
0.00
3.16
3672
4205
1.571919
ATAAGAGTCGCGTGAATGGC
58.428
50.000
2.56
0.00
0.00
4.40
3680
4213
4.214383
CGTGAATGGCGCTCGCTG
62.214
66.667
7.64
0.00
41.60
5.18
3681
4214
3.869272
GTGAATGGCGCTCGCTGG
61.869
66.667
7.64
0.00
41.60
4.85
3689
4222
4.147449
CGCTCGCTGGGTGATCCA
62.147
66.667
0.00
0.00
44.79
3.41
3690
4223
2.512515
GCTCGCTGGGTGATCCAC
60.513
66.667
0.00
0.00
41.46
4.02
3691
4224
2.202797
CTCGCTGGGTGATCCACG
60.203
66.667
1.16
1.16
41.46
4.94
3692
4225
4.451150
TCGCTGGGTGATCCACGC
62.451
66.667
7.13
7.13
45.53
5.34
3697
4230
4.218722
GGGTGATCCACGCGATTT
57.781
55.556
15.93
0.00
37.54
2.17
3698
4231
2.477880
GGGTGATCCACGCGATTTT
58.522
52.632
15.93
0.00
37.54
1.82
3699
4232
1.658994
GGGTGATCCACGCGATTTTA
58.341
50.000
15.93
0.00
37.54
1.52
3700
4233
1.329599
GGGTGATCCACGCGATTTTAC
59.670
52.381
15.93
4.29
37.54
2.01
3701
4234
2.277084
GGTGATCCACGCGATTTTACT
58.723
47.619
15.93
0.00
34.83
2.24
3702
4235
2.030457
GGTGATCCACGCGATTTTACTG
59.970
50.000
15.93
0.00
34.83
2.74
3703
4236
2.671396
GTGATCCACGCGATTTTACTGT
59.329
45.455
15.93
0.00
0.00
3.55
3704
4237
2.670905
TGATCCACGCGATTTTACTGTG
59.329
45.455
15.93
0.00
0.00
3.66
3705
4238
0.793861
TCCACGCGATTTTACTGTGC
59.206
50.000
15.93
0.00
0.00
4.57
3706
4239
0.179200
CCACGCGATTTTACTGTGCC
60.179
55.000
15.93
0.00
0.00
5.01
3707
4240
0.518355
CACGCGATTTTACTGTGCCG
60.518
55.000
15.93
0.00
0.00
5.69
3708
4241
0.668096
ACGCGATTTTACTGTGCCGA
60.668
50.000
15.93
0.00
0.00
5.54
3709
4242
0.650512
CGCGATTTTACTGTGCCGAT
59.349
50.000
0.00
0.00
0.00
4.18
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
0
1
0.993509
TCCTTAGGCCCCTCCCAATG
60.994
60.000
0.00
0.00
34.51
2.82
1
2
0.994050
GTCCTTAGGCCCCTCCCAAT
60.994
60.000
0.00
0.00
34.51
3.16
3
4
2.042261
GTCCTTAGGCCCCTCCCA
59.958
66.667
0.00
0.00
34.51
4.37
4
5
0.919780
AAAGTCCTTAGGCCCCTCCC
60.920
60.000
0.00
0.00
34.51
4.30
5
6
1.000496
AAAAGTCCTTAGGCCCCTCC
59.000
55.000
0.00
0.00
0.00
4.30
6
7
2.421670
GCTAAAAGTCCTTAGGCCCCTC
60.422
54.545
0.00
0.00
30.79
4.30
7
8
1.564818
GCTAAAAGTCCTTAGGCCCCT
59.435
52.381
0.00
0.00
30.79
4.79
8
9
1.283905
TGCTAAAAGTCCTTAGGCCCC
59.716
52.381
0.00
0.00
30.79
5.80
10
11
5.462530
TTTTTGCTAAAAGTCCTTAGGCC
57.537
39.130
0.00
0.00
30.79
5.19
39
40
9.598517
AGCAAATCAAACAAGATGAAACTTTTA
57.401
25.926
0.00
0.00
0.00
1.52
40
41
8.496707
AGCAAATCAAACAAGATGAAACTTTT
57.503
26.923
0.00
0.00
0.00
2.27
41
42
9.252962
CTAGCAAATCAAACAAGATGAAACTTT
57.747
29.630
0.00
0.00
0.00
2.66
42
43
7.869429
CCTAGCAAATCAAACAAGATGAAACTT
59.131
33.333
0.00
0.00
0.00
2.66
43
44
7.373493
CCTAGCAAATCAAACAAGATGAAACT
58.627
34.615
0.00
0.00
0.00
2.66
44
45
6.587608
CCCTAGCAAATCAAACAAGATGAAAC
59.412
38.462
0.00
0.00
0.00
2.78
45
46
6.493115
TCCCTAGCAAATCAAACAAGATGAAA
59.507
34.615
0.00
0.00
0.00
2.69
46
47
6.009589
TCCCTAGCAAATCAAACAAGATGAA
58.990
36.000
0.00
0.00
0.00
2.57
47
48
5.415701
GTCCCTAGCAAATCAAACAAGATGA
59.584
40.000
0.00
0.00
0.00
2.92
48
49
5.416952
AGTCCCTAGCAAATCAAACAAGATG
59.583
40.000
0.00
0.00
0.00
2.90
49
50
5.574188
AGTCCCTAGCAAATCAAACAAGAT
58.426
37.500
0.00
0.00
0.00
2.40
50
51
4.985538
AGTCCCTAGCAAATCAAACAAGA
58.014
39.130
0.00
0.00
0.00
3.02
51
52
5.712152
AAGTCCCTAGCAAATCAAACAAG
57.288
39.130
0.00
0.00
0.00
3.16
52
53
5.833131
AGAAAGTCCCTAGCAAATCAAACAA
59.167
36.000
0.00
0.00
0.00
2.83
53
54
5.385198
AGAAAGTCCCTAGCAAATCAAACA
58.615
37.500
0.00
0.00
0.00
2.83
54
55
5.707764
AGAGAAAGTCCCTAGCAAATCAAAC
59.292
40.000
0.00
0.00
0.00
2.93
55
56
5.880901
AGAGAAAGTCCCTAGCAAATCAAA
58.119
37.500
0.00
0.00
0.00
2.69
56
57
5.505181
AGAGAAAGTCCCTAGCAAATCAA
57.495
39.130
0.00
0.00
0.00
2.57
57
58
6.620877
TTAGAGAAAGTCCCTAGCAAATCA
57.379
37.500
0.00
0.00
0.00
2.57
58
59
6.708502
GGATTAGAGAAAGTCCCTAGCAAATC
59.291
42.308
0.00
0.00
0.00
2.17
59
60
6.409810
GGGATTAGAGAAAGTCCCTAGCAAAT
60.410
42.308
2.09
0.00
45.57
2.32
60
61
5.104485
GGGATTAGAGAAAGTCCCTAGCAAA
60.104
44.000
2.09
0.00
45.57
3.68
61
62
4.409247
GGGATTAGAGAAAGTCCCTAGCAA
59.591
45.833
2.09
0.00
45.57
3.91
62
63
3.967987
GGGATTAGAGAAAGTCCCTAGCA
59.032
47.826
2.09
0.00
45.57
3.49
63
64
4.610605
GGGATTAGAGAAAGTCCCTAGC
57.389
50.000
2.09
0.00
45.57
3.42
68
69
4.906618
TGTGTTGGGATTAGAGAAAGTCC
58.093
43.478
0.00
0.00
0.00
3.85
69
70
6.877611
TTTGTGTTGGGATTAGAGAAAGTC
57.122
37.500
0.00
0.00
0.00
3.01
70
71
7.654022
TTTTTGTGTTGGGATTAGAGAAAGT
57.346
32.000
0.00
0.00
0.00
2.66
91
92
4.323180
GGTGTTTGGTTTCAGGGACTTTTT
60.323
41.667
0.00
0.00
34.60
1.94
92
93
3.196901
GGTGTTTGGTTTCAGGGACTTTT
59.803
43.478
0.00
0.00
34.60
2.27
93
94
2.764010
GGTGTTTGGTTTCAGGGACTTT
59.236
45.455
0.00
0.00
34.60
2.66
94
95
2.384828
GGTGTTTGGTTTCAGGGACTT
58.615
47.619
0.00
0.00
34.60
3.01
95
96
1.411074
GGGTGTTTGGTTTCAGGGACT
60.411
52.381
0.00
0.00
43.88
3.85
96
97
1.037493
GGGTGTTTGGTTTCAGGGAC
58.963
55.000
0.00
0.00
0.00
4.46
97
98
0.105913
GGGGTGTTTGGTTTCAGGGA
60.106
55.000
0.00
0.00
0.00
4.20
98
99
1.118965
GGGGGTGTTTGGTTTCAGGG
61.119
60.000
0.00
0.00
0.00
4.45
99
100
0.105709
AGGGGGTGTTTGGTTTCAGG
60.106
55.000
0.00
0.00
0.00
3.86
100
101
2.668144
TAGGGGGTGTTTGGTTTCAG
57.332
50.000
0.00
0.00
0.00
3.02
101
102
2.245287
ACTTAGGGGGTGTTTGGTTTCA
59.755
45.455
0.00
0.00
0.00
2.69
102
103
2.889045
GACTTAGGGGGTGTTTGGTTTC
59.111
50.000
0.00
0.00
0.00
2.78
103
104
2.245287
TGACTTAGGGGGTGTTTGGTTT
59.755
45.455
0.00
0.00
0.00
3.27
104
105
1.854280
TGACTTAGGGGGTGTTTGGTT
59.146
47.619
0.00
0.00
0.00
3.67
105
106
1.525175
TGACTTAGGGGGTGTTTGGT
58.475
50.000
0.00
0.00
0.00
3.67
106
107
2.514803
CTTGACTTAGGGGGTGTTTGG
58.485
52.381
0.00
0.00
0.00
3.28
107
108
1.886542
GCTTGACTTAGGGGGTGTTTG
59.113
52.381
0.00
0.00
0.00
2.93
108
109
1.544759
CGCTTGACTTAGGGGGTGTTT
60.545
52.381
0.00
0.00
0.00
2.83
109
110
0.036306
CGCTTGACTTAGGGGGTGTT
59.964
55.000
0.00
0.00
0.00
3.32
110
111
1.677552
CGCTTGACTTAGGGGGTGT
59.322
57.895
0.00
0.00
0.00
4.16
111
112
1.078426
CCGCTTGACTTAGGGGGTG
60.078
63.158
0.00
0.00
42.78
4.61
112
113
3.400188
CCGCTTGACTTAGGGGGT
58.600
61.111
0.00
0.00
42.78
4.95
115
116
3.340727
CGTACCGCTTGACTTAGGG
57.659
57.895
0.00
0.00
0.00
3.53
135
136
2.463589
TTAGGAACTGGCGCCCACTG
62.464
60.000
26.77
13.99
41.52
3.66
136
137
1.774894
TTTAGGAACTGGCGCCCACT
61.775
55.000
26.77
16.54
41.52
4.00
137
138
1.302993
TTTAGGAACTGGCGCCCAC
60.303
57.895
26.77
12.24
41.52
4.61
138
139
1.302993
GTTTAGGAACTGGCGCCCA
60.303
57.895
26.77
11.42
41.52
5.36
139
140
2.044555
GGTTTAGGAACTGGCGCCC
61.045
63.158
26.77
8.13
41.52
6.13
140
141
2.396157
CGGTTTAGGAACTGGCGCC
61.396
63.158
22.73
22.73
41.52
6.53
141
142
3.174788
CGGTTTAGGAACTGGCGC
58.825
61.111
0.00
0.00
41.52
6.53
145
146
1.024579
ATGCGCCGGTTTAGGAACTG
61.025
55.000
4.18
0.00
41.52
3.16
146
147
0.538118
TATGCGCCGGTTTAGGAACT
59.462
50.000
4.18
0.00
46.37
3.01
147
148
1.371595
TTATGCGCCGGTTTAGGAAC
58.628
50.000
4.18
0.00
34.96
3.62
148
149
2.011222
CTTTATGCGCCGGTTTAGGAA
58.989
47.619
4.18
0.00
0.00
3.36
149
150
1.065998
ACTTTATGCGCCGGTTTAGGA
60.066
47.619
4.18
0.00
0.00
2.94
150
151
1.063469
CACTTTATGCGCCGGTTTAGG
59.937
52.381
4.18
0.00
0.00
2.69
151
152
1.531058
GCACTTTATGCGCCGGTTTAG
60.531
52.381
4.18
0.00
46.55
1.85
152
153
0.448593
GCACTTTATGCGCCGGTTTA
59.551
50.000
4.18
0.00
46.55
2.01
153
154
1.211709
GCACTTTATGCGCCGGTTT
59.788
52.632
4.18
0.00
46.55
3.27
154
155
2.874751
GCACTTTATGCGCCGGTT
59.125
55.556
4.18
0.00
46.55
4.44
162
163
3.270877
AGCTCCTAAACGGCACTTTATG
58.729
45.455
0.00
0.00
0.00
1.90
163
164
3.197983
AGAGCTCCTAAACGGCACTTTAT
59.802
43.478
10.93
0.00
0.00
1.40
164
165
2.565834
AGAGCTCCTAAACGGCACTTTA
59.434
45.455
10.93
0.00
0.00
1.85
165
166
1.348036
AGAGCTCCTAAACGGCACTTT
59.652
47.619
10.93
0.00
0.00
2.66
166
167
0.977395
AGAGCTCCTAAACGGCACTT
59.023
50.000
10.93
0.00
0.00
3.16
167
168
0.977395
AAGAGCTCCTAAACGGCACT
59.023
50.000
10.93
0.00
0.00
4.40
168
169
1.079503
CAAGAGCTCCTAAACGGCAC
58.920
55.000
10.93
0.00
0.00
5.01
169
170
0.673644
GCAAGAGCTCCTAAACGGCA
60.674
55.000
10.93
0.00
37.91
5.69
170
171
2.090693
GCAAGAGCTCCTAAACGGC
58.909
57.895
10.93
0.06
37.91
5.68
197
198
1.077265
AATGTCTGGGCCCTGTTGG
59.923
57.895
25.70
8.09
37.09
3.77
198
199
1.880819
GCAATGTCTGGGCCCTGTTG
61.881
60.000
25.70
22.21
0.00
3.33
199
200
1.607467
GCAATGTCTGGGCCCTGTT
60.607
57.895
25.70
10.36
0.00
3.16
200
201
2.036256
GCAATGTCTGGGCCCTGT
59.964
61.111
25.70
3.51
0.00
4.00
201
202
1.751927
GAGCAATGTCTGGGCCCTG
60.752
63.158
25.70
23.93
0.00
4.45
202
203
2.679716
GAGCAATGTCTGGGCCCT
59.320
61.111
25.70
0.00
0.00
5.19
203
204
2.825836
CGAGCAATGTCTGGGCCC
60.826
66.667
17.59
17.59
0.00
5.80
204
205
1.244019
AAACGAGCAATGTCTGGGCC
61.244
55.000
0.00
0.00
0.00
5.80
205
206
0.598065
AAAACGAGCAATGTCTGGGC
59.402
50.000
0.00
0.00
0.00
5.36
206
207
2.095567
CAGAAAACGAGCAATGTCTGGG
60.096
50.000
0.00
0.00
31.02
4.45
207
208
2.807967
TCAGAAAACGAGCAATGTCTGG
59.192
45.455
0.00
0.00
34.57
3.86
208
209
4.675190
ATCAGAAAACGAGCAATGTCTG
57.325
40.909
0.00
0.00
35.01
3.51
209
210
4.999950
AGAATCAGAAAACGAGCAATGTCT
59.000
37.500
0.00
0.00
0.00
3.41
210
211
5.288543
AGAATCAGAAAACGAGCAATGTC
57.711
39.130
0.00
0.00
0.00
3.06
211
212
4.154918
GGAGAATCAGAAAACGAGCAATGT
59.845
41.667
0.00
0.00
36.25
2.71
212
213
4.437930
GGGAGAATCAGAAAACGAGCAATG
60.438
45.833
0.00
0.00
36.25
2.82
332
333
1.375523
GACGGCGACAACCTTGGAT
60.376
57.895
16.62
0.00
0.00
3.41
577
585
9.823098
CAATTTCTCAACAATTGACAACAAAAA
57.177
25.926
13.59
4.38
42.10
1.94
639
658
9.265901
GTAATGCAATAGAGAGATGCTTTCTAA
57.734
33.333
0.00
0.00
40.66
2.10
643
662
7.387397
GCTAGTAATGCAATAGAGAGATGCTTT
59.613
37.037
0.00
0.00
40.66
3.51
678
697
7.503566
AGAATGCTTGCCAGTAATACAATACAT
59.496
33.333
0.00
0.00
0.00
2.29
754
891
2.906389
TGTCCCTACAGCAACAGAGAAT
59.094
45.455
0.00
0.00
0.00
2.40
813
950
7.330946
CACACGAACATCAACTTAAGGAGATTA
59.669
37.037
7.53
0.00
0.00
1.75
861
998
0.657840
GCTGCATTACTAACCCTGCG
59.342
55.000
0.00
0.00
37.44
5.18
947
1092
2.745515
AACCGAGGTCTTGAGTTAGC
57.254
50.000
0.00
0.00
0.00
3.09
987
1132
5.760253
GCCTAGAAGCATGAACAGCTAATAA
59.240
40.000
0.00
0.00
42.53
1.40
988
1133
5.300752
GCCTAGAAGCATGAACAGCTAATA
58.699
41.667
0.00
0.00
42.53
0.98
989
1134
4.133078
GCCTAGAAGCATGAACAGCTAAT
58.867
43.478
0.00
0.00
42.53
1.73
1045
1190
2.719354
GCAAACCGAACGGCAAGT
59.281
55.556
13.32
0.00
39.32
3.16
1055
1200
1.178534
AGTTGTCCATGGGCAAACCG
61.179
55.000
32.54
0.00
44.64
4.44
1092
1237
2.174210
ACGGTACCAGAGTAGATGGCTA
59.826
50.000
13.54
0.00
41.87
3.93
1187
1332
1.821136
CCCCTTGCTTTGTTGATCTCC
59.179
52.381
0.00
0.00
0.00
3.71
1250
1395
4.263905
CCTTGCCATTATATGCCTTCCCTA
60.264
45.833
0.00
0.00
0.00
3.53
1331
1476
6.294473
AGCATACCATGATTTCCTAACTGAG
58.706
40.000
0.00
0.00
0.00
3.35
1355
1500
5.508200
AACGAACTGCACTTTTCCATTAA
57.492
34.783
0.00
0.00
0.00
1.40
1500
1645
3.526931
TCCGCACTTATTCCTCTCTTG
57.473
47.619
0.00
0.00
0.00
3.02
1502
1647
7.122715
AGATATATCCGCACTTATTCCTCTCT
58.877
38.462
9.18
0.00
0.00
3.10
1665
1810
0.861837
CGTTCTCCAGCTGACAACAC
59.138
55.000
17.39
4.17
0.00
3.32
1683
1828
3.181501
TGTTCTGAAAAACCTGACAAGCG
60.182
43.478
0.00
0.00
0.00
4.68
1713
1858
4.772434
CTGTCCACGACACAGTATTTTTG
58.228
43.478
0.00
0.00
37.67
2.44
1740
1885
2.722094
TCCTGCGCATAACCAGAAATT
58.278
42.857
12.24
0.00
0.00
1.82
1809
1954
0.399833
TGTCATTAGGCCTGCACACA
59.600
50.000
17.99
10.43
0.00
3.72
1935
2080
5.723492
TTGATATCAGTGCATTTGAGACG
57.277
39.130
5.39
0.00
0.00
4.18
2011
2156
1.145738
AGAAACCAGGTCCTTGCACAT
59.854
47.619
0.00
0.00
0.00
3.21
2076
2221
7.647907
TTCTTTTAGTAAGCTTAGACAACGG
57.352
36.000
6.38
0.00
0.00
4.44
2078
2223
9.827411
CCATTTCTTTTAGTAAGCTTAGACAAC
57.173
33.333
6.38
0.00
0.00
3.32
2115
2260
5.736951
AGGAGATTACATCAGGCACTATC
57.263
43.478
0.00
0.00
36.02
2.08
2211
2356
4.168101
ACTCTGGTTCTATTCCAAGTCCA
58.832
43.478
0.00
0.00
34.35
4.02
2358
2503
5.581126
GAATGTTTCCATGCATCCTACAA
57.419
39.130
0.00
0.00
0.00
2.41
2433
2578
1.936547
GCTAGCTGTACATGAGTTGCC
59.063
52.381
7.70
0.00
0.00
4.52
2559
2704
5.640357
TGTGAAAGTATAAACCTTACTGCCG
59.360
40.000
0.00
0.00
30.46
5.69
2651
2796
6.914215
CAGCACATCATGTTTGTATTCCATAC
59.086
38.462
0.00
0.00
36.29
2.39
2720
2865
6.655003
CCCAATACTTTACTCAGAGCTCAAAA
59.345
38.462
17.77
7.18
0.00
2.44
2733
2878
7.114529
CGACGTTATCATCTCCCAATACTTTAC
59.885
40.741
0.00
0.00
0.00
2.01
2754
2899
4.678622
TCATATACAAATGACTGCGACGT
58.321
39.130
0.00
0.00
30.92
4.34
2757
2904
7.209475
TGATCTTCATATACAAATGACTGCGA
58.791
34.615
0.00
0.00
35.63
5.10
2797
2948
4.070716
AGGTGAGAGTCATGCTTTTTCTG
58.929
43.478
0.00
0.00
0.00
3.02
2884
3035
0.595095
GTGGGAAAACTCTGCTGCTG
59.405
55.000
0.00
0.00
0.00
4.41
2890
3041
1.202651
ACGTCAGGTGGGAAAACTCTG
60.203
52.381
0.00
0.00
0.00
3.35
2973
3124
6.697892
GCAGCCTAGTCTAATTAACAGTGTAG
59.302
42.308
0.00
0.00
0.00
2.74
2980
3131
6.807789
ACTAGTGCAGCCTAGTCTAATTAAC
58.192
40.000
14.55
0.00
43.17
2.01
2981
3132
8.529424
TTACTAGTGCAGCCTAGTCTAATTAA
57.471
34.615
20.61
10.32
43.17
1.40
3011
3162
0.596082
AAGTTCCCAAATGGTTCGCG
59.404
50.000
0.00
0.00
34.77
5.87
3198
3356
0.765510
AGGCCGATTAGGGGATTGAC
59.234
55.000
0.00
0.00
41.48
3.18
3200
3358
1.421646
AGAAGGCCGATTAGGGGATTG
59.578
52.381
0.00
0.00
41.48
2.67
3211
3369
5.871396
AGAGACAATTATTAGAAGGCCGA
57.129
39.130
0.00
0.00
0.00
5.54
3214
3372
8.338986
GCAACTAAGAGACAATTATTAGAAGGC
58.661
37.037
0.00
0.00
0.00
4.35
3228
3386
4.757149
ACCACAAGAATGCAACTAAGAGAC
59.243
41.667
0.00
0.00
0.00
3.36
3267
3718
4.885325
TCTTCCACAAACCACTAAAAGGAC
59.115
41.667
0.00
0.00
0.00
3.85
3323
3774
5.582689
AACATAGGTGGAAAGCAATAAGC
57.417
39.130
0.00
0.00
46.19
3.09
3441
3892
2.276740
CAGGATGGAACCCTGGGC
59.723
66.667
14.08
0.00
45.66
5.36
3457
3908
4.201980
CGAACACACCTATAAGATCGACCA
60.202
45.833
0.00
0.00
0.00
4.02
3462
3913
6.200475
GCTTAACCGAACACACCTATAAGATC
59.800
42.308
0.00
0.00
0.00
2.75
3490
3941
0.179084
AGATGGGTACAATCCACGCG
60.179
55.000
3.53
3.53
37.08
6.01
3575
4108
9.687717
CTTTACACAAAATGCAACTGTTAAAAG
57.312
29.630
0.00
3.56
0.00
2.27
3577
4110
7.331934
TGCTTTACACAAAATGCAACTGTTAAA
59.668
29.630
0.00
2.91
32.16
1.52
3578
4111
6.813649
TGCTTTACACAAAATGCAACTGTTAA
59.186
30.769
0.00
0.00
32.16
2.01
3587
4120
6.918022
AGAAAGTACTGCTTTACACAAAATGC
59.082
34.615
0.00
0.00
46.54
3.56
3642
4175
3.242413
CGCGACTCTTATTGGGTTTGATG
60.242
47.826
0.00
0.00
0.00
3.07
3645
4178
2.073816
ACGCGACTCTTATTGGGTTTG
58.926
47.619
15.93
0.00
0.00
2.93
3646
4179
2.073816
CACGCGACTCTTATTGGGTTT
58.926
47.619
15.93
0.00
0.00
3.27
3647
4180
1.274167
TCACGCGACTCTTATTGGGTT
59.726
47.619
15.93
0.00
0.00
4.11
3648
4181
0.892755
TCACGCGACTCTTATTGGGT
59.107
50.000
15.93
0.00
0.00
4.51
3649
4182
2.004583
TTCACGCGACTCTTATTGGG
57.995
50.000
15.93
0.00
0.00
4.12
3650
4183
2.285220
CCATTCACGCGACTCTTATTGG
59.715
50.000
15.93
4.72
0.00
3.16
3651
4184
2.285834
GCCATTCACGCGACTCTTATTG
60.286
50.000
15.93
0.00
0.00
1.90
3652
4185
1.933853
GCCATTCACGCGACTCTTATT
59.066
47.619
15.93
0.00
0.00
1.40
3653
4186
1.571919
GCCATTCACGCGACTCTTAT
58.428
50.000
15.93
0.00
0.00
1.73
3654
4187
3.044809
GCCATTCACGCGACTCTTA
57.955
52.632
15.93
0.00
0.00
2.10
3655
4188
3.876300
GCCATTCACGCGACTCTT
58.124
55.556
15.93
0.00
0.00
2.85
3663
4196
4.214383
CAGCGAGCGCCATTCACG
62.214
66.667
11.66
1.90
43.17
4.35
3664
4197
3.869272
CCAGCGAGCGCCATTCAC
61.869
66.667
11.66
0.00
43.17
3.18
3672
4205
4.147449
TGGATCACCCAGCGAGCG
62.147
66.667
0.00
0.00
40.82
5.03
3679
4212
0.322098
AAAATCGCGTGGATCACCCA
60.322
50.000
5.77
0.00
44.25
4.51
3680
4213
1.329599
GTAAAATCGCGTGGATCACCC
59.670
52.381
5.77
0.00
33.02
4.61
3681
4214
2.030457
CAGTAAAATCGCGTGGATCACC
59.970
50.000
5.77
0.00
33.02
4.02
3682
4215
2.671396
ACAGTAAAATCGCGTGGATCAC
59.329
45.455
5.77
0.00
33.02
3.06
3683
4216
2.670905
CACAGTAAAATCGCGTGGATCA
59.329
45.455
5.77
0.00
33.02
2.92
3684
4217
2.536928
GCACAGTAAAATCGCGTGGATC
60.537
50.000
5.77
0.00
33.02
3.36
3685
4218
1.396996
GCACAGTAAAATCGCGTGGAT
59.603
47.619
5.77
0.00
36.78
3.41
3686
4219
0.793861
GCACAGTAAAATCGCGTGGA
59.206
50.000
5.77
0.00
0.00
4.02
3687
4220
0.179200
GGCACAGTAAAATCGCGTGG
60.179
55.000
5.77
0.00
0.00
4.94
3688
4221
0.518355
CGGCACAGTAAAATCGCGTG
60.518
55.000
5.77
0.00
0.00
5.34
3689
4222
0.668096
TCGGCACAGTAAAATCGCGT
60.668
50.000
5.77
0.00
0.00
6.01
3690
4223
0.650512
ATCGGCACAGTAAAATCGCG
59.349
50.000
0.00
0.00
0.00
5.87
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.