Multiple sequence alignment - TraesCS3B01G217000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G217000 chr3B 100.000 2930 0 0 1 2930 257845943 257848872 0.000000e+00 5411.0
1 TraesCS3B01G217000 chr3B 92.500 40 2 1 1 39 18731426 18731465 4.080000e-04 56.5
2 TraesCS3B01G217000 chr3B 92.500 40 2 1 1 39 68225415 68225376 4.080000e-04 56.5
3 TraesCS3B01G217000 chr3D 94.366 2911 104 26 34 2930 179947680 179950544 0.000000e+00 4412.0
4 TraesCS3B01G217000 chr3D 77.994 359 64 14 2441 2793 147921586 147921237 8.230000e-51 211.0
5 TraesCS3B01G217000 chr3D 75.910 357 77 7 2439 2793 98940636 98940985 1.080000e-39 174.0
6 TraesCS3B01G217000 chr3A 93.300 2388 93 20 563 2930 224377391 224379731 0.000000e+00 3461.0
7 TraesCS3B01G217000 chr3A 92.131 521 22 5 34 552 224376841 224377344 0.000000e+00 717.0
8 TraesCS3B01G217000 chr3A 78.273 359 67 10 2439 2793 725161655 725161304 1.370000e-53 220.0
9 TraesCS3B01G217000 chr3A 78.273 359 67 10 2439 2793 725177048 725176697 1.370000e-53 220.0
10 TraesCS3B01G217000 chr2D 81.232 357 54 12 2442 2793 429043498 429043150 2.880000e-70 276.0
11 TraesCS3B01G217000 chr5A 78.505 321 62 6 2439 2757 450878399 450878714 1.380000e-48 204.0
12 TraesCS3B01G217000 chr5A 79.608 255 36 13 2545 2793 608473009 608473253 5.020000e-38 169.0
13 TraesCS3B01G217000 chr5A 92.500 40 1 2 1 39 580540759 580540721 4.080000e-04 56.5
14 TraesCS3B01G217000 chr6A 79.078 282 52 7 2506 2785 503234958 503235234 1.390000e-43 187.0
15 TraesCS3B01G217000 chr6A 89.130 46 3 1 1 44 93180419 93180374 4.080000e-04 56.5
16 TraesCS3B01G217000 chr4B 100.000 40 0 0 693 732 142674019 142674058 1.130000e-09 75.0
17 TraesCS3B01G217000 chr5B 100.000 37 0 0 1 37 553942114 553942078 5.240000e-08 69.4
18 TraesCS3B01G217000 chr7A 95.122 41 2 0 1 41 709713842 709713882 6.780000e-07 65.8
19 TraesCS3B01G217000 chrUn 90.698 43 3 1 1 43 312895021 312895062 4.080000e-04 56.5
20 TraesCS3B01G217000 chr6B 97.059 34 0 1 1 34 52113000 52113032 4.080000e-04 56.5
21 TraesCS3B01G217000 chr2A 92.500 40 1 1 1 38 710360670 710360631 4.080000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G217000 chr3B 257845943 257848872 2929 False 5411 5411 100.0000 1 2930 1 chr3B.!!$F2 2929
1 TraesCS3B01G217000 chr3D 179947680 179950544 2864 False 4412 4412 94.3660 34 2930 1 chr3D.!!$F2 2896
2 TraesCS3B01G217000 chr3A 224376841 224379731 2890 False 2089 3461 92.7155 34 2930 2 chr3A.!!$F1 2896

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.250252 GCTGGAGATGCCCTTAGCTC 60.250 60.000 0.0 0.0 44.23 4.09 F
502 505 1.218854 GTGCCCATTTGCCCATGTC 59.781 57.895 0.0 0.0 0.00 3.06 F
767 807 1.406069 GCATCCCGACCTATGCCTATG 60.406 57.143 0.0 0.0 42.13 2.23 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1163 1207 0.729116 CGGCGATGAACAGCTCAAAT 59.271 50.000 0.00 0.0 37.67 2.32 R
1563 1613 1.153706 GGCCAACGCGTTAGAGCTA 60.154 57.895 28.49 0.0 35.02 3.32 R
2567 2629 0.179171 ACGACGACTGTATCCAAGCG 60.179 55.000 0.00 0.0 0.00 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.228094 GGCTGGAGATGCCCTTAGC 60.228 63.158 0.00 0.00 44.32 3.09
31 32 1.704007 GGCTGGAGATGCCCTTAGCT 61.704 60.000 0.00 0.00 44.32 3.32
32 33 0.250252 GCTGGAGATGCCCTTAGCTC 60.250 60.000 0.00 0.00 44.23 4.09
95 96 7.282585 TGGAGTCTCTGGTATATTCCAAATTG 58.717 38.462 2.41 0.00 37.01 2.32
216 217 2.648059 AGCCTGCAGACATACCATTTC 58.352 47.619 17.39 0.00 0.00 2.17
238 240 1.681793 ACGCAGCCGACATAACTATCT 59.318 47.619 0.00 0.00 38.29 1.98
340 342 5.776744 AGTCAAAGTGATCTTGGAATTTGC 58.223 37.500 0.00 0.00 35.64 3.68
502 505 1.218854 GTGCCCATTTGCCCATGTC 59.781 57.895 0.00 0.00 0.00 3.06
535 539 7.608153 ACTTAATTACTTCCAATTTTTCCCGG 58.392 34.615 0.00 0.00 30.84 5.73
552 556 5.766150 TCCCGGCAAAATATTATTCACTG 57.234 39.130 0.00 0.00 0.00 3.66
554 558 5.067153 TCCCGGCAAAATATTATTCACTGTG 59.933 40.000 0.17 0.17 0.00 3.66
555 559 5.163561 CCCGGCAAAATATTATTCACTGTGT 60.164 40.000 7.79 0.00 0.00 3.72
557 561 7.255451 CCCGGCAAAATATTATTCACTGTGTAT 60.255 37.037 7.79 6.42 0.00 2.29
592 632 7.441157 ACAAACGTATCTTCTCTGAAATGTTCA 59.559 33.333 0.00 0.00 38.17 3.18
600 640 8.908786 TCTTCTCTGAAATGTTCAAGTGTATT 57.091 30.769 0.00 0.00 39.58 1.89
767 807 1.406069 GCATCCCGACCTATGCCTATG 60.406 57.143 0.00 0.00 42.13 2.23
888 928 4.830046 ACGGTAAGCAGTAGATGAGATGAT 59.170 41.667 0.00 0.00 0.00 2.45
1133 1177 2.790433 GTCAGGAACAATGGGTAAGCA 58.210 47.619 0.00 0.00 0.00 3.91
1151 1195 4.623932 AGCACACAGAAATGAGGTCTAA 57.376 40.909 0.00 0.00 0.00 2.10
1190 1234 2.823593 TTCATCGCCGGTGCATGG 60.824 61.111 11.05 3.67 37.32 3.66
1217 1261 9.448438 TTGCTAACTAATCTTTGTGATATGTGT 57.552 29.630 0.00 0.00 34.45 3.72
1262 1306 1.519408 GGTACGGCAACATGTTCAGT 58.481 50.000 8.48 12.40 0.00 3.41
1562 1612 1.884464 CCCATCGCATCGGTGACTG 60.884 63.158 0.00 0.00 40.81 3.51
1563 1613 1.153568 CCATCGCATCGGTGACTGT 60.154 57.895 0.00 0.00 40.81 3.55
1686 1740 0.541863 CCGGCCACTCCTACTTCAAT 59.458 55.000 2.24 0.00 0.00 2.57
2069 2130 1.141254 TGAGGTTACGCACTTTTGGGA 59.859 47.619 0.00 0.00 39.02 4.37
2185 2247 5.942236 TGAGCTCAGAAGATTAAAGCAATGT 59.058 36.000 13.74 0.00 35.42 2.71
2210 2272 1.328680 CTGTGGTGACGAGCATAATGC 59.671 52.381 0.00 0.00 45.46 3.56
2297 2359 5.218139 GGAATGTGTTTTGAGAGCTTGAAG 58.782 41.667 0.00 0.00 0.00 3.02
2339 2401 6.764560 GCTTGGCCAATTCTTTCATTTATCAT 59.235 34.615 20.85 0.00 0.00 2.45
2340 2402 7.254658 GCTTGGCCAATTCTTTCATTTATCATG 60.255 37.037 20.85 1.19 0.00 3.07
2341 2403 7.185318 TGGCCAATTCTTTCATTTATCATGT 57.815 32.000 0.61 0.00 0.00 3.21
2342 2404 7.267128 TGGCCAATTCTTTCATTTATCATGTC 58.733 34.615 0.61 0.00 0.00 3.06
2343 2405 7.093421 TGGCCAATTCTTTCATTTATCATGTCA 60.093 33.333 0.61 0.00 0.00 3.58
2344 2406 7.765360 GGCCAATTCTTTCATTTATCATGTCAA 59.235 33.333 0.00 0.00 0.00 3.18
2345 2407 8.598075 GCCAATTCTTTCATTTATCATGTCAAC 58.402 33.333 0.00 0.00 0.00 3.18
2346 2408 9.865321 CCAATTCTTTCATTTATCATGTCAACT 57.135 29.630 0.00 0.00 0.00 3.16
2366 2428 7.915397 GTCAACTTGTCAAGCTTCAAGATTTTA 59.085 33.333 26.25 7.56 42.22 1.52
2380 2442 7.200434 TCAAGATTTTAGCCAGAGTAGGAAT 57.800 36.000 0.00 0.00 0.00 3.01
2455 2517 6.062095 CCCCGTAGAAGATGGAATAATGTTT 58.938 40.000 0.00 0.00 36.09 2.83
2465 2527 2.764010 GGAATAATGTTTTCCCCGCCTT 59.236 45.455 0.00 0.00 37.29 4.35
2479 2541 4.060667 CCTTGCCCCCGTCCCAAT 62.061 66.667 0.00 0.00 0.00 3.16
2502 2564 2.516460 GTCTAGCCTCGCCGGAGA 60.516 66.667 5.05 6.70 43.27 3.71
2526 2588 2.037772 GTGTGGAGGTGTGTCTTCATCT 59.962 50.000 0.00 0.00 0.00 2.90
2527 2589 2.037641 TGTGGAGGTGTGTCTTCATCTG 59.962 50.000 0.00 0.00 0.00 2.90
2531 2593 3.431486 GGAGGTGTGTCTTCATCTGATCC 60.431 52.174 0.00 0.00 0.00 3.36
2532 2594 3.176411 AGGTGTGTCTTCATCTGATCCA 58.824 45.455 0.00 0.00 0.00 3.41
2538 2600 2.121948 TCTTCATCTGATCCAGTGGGG 58.878 52.381 9.92 0.00 38.37 4.96
2544 2606 2.124695 GATCCAGTGGGGTTCGGC 60.125 66.667 9.92 0.00 38.11 5.54
2567 2629 1.076332 CGTTTGTCTTCGGTGGATCC 58.924 55.000 4.20 4.20 0.00 3.36
2598 2660 0.519999 GTCGTCGTTCGTATGCGTCT 60.520 55.000 2.37 0.00 40.80 4.18
2615 2677 2.279741 GTCTGTGTGTTTGTCTGCAGA 58.720 47.619 13.74 13.74 0.00 4.26
2639 2701 4.762289 AGATCCTTCCAATCTACGCTTT 57.238 40.909 0.00 0.00 31.71 3.51
2671 2734 0.464036 ACGTTGCTGTTCTGGTGAGA 59.536 50.000 0.00 0.00 0.00 3.27
2710 2773 1.134560 GCACGAGACTTCCCGACTATT 59.865 52.381 0.00 0.00 0.00 1.73
2713 2776 4.349501 CACGAGACTTCCCGACTATTTAC 58.650 47.826 0.00 0.00 0.00 2.01
2716 2779 5.295540 ACGAGACTTCCCGACTATTTACTAC 59.704 44.000 0.00 0.00 0.00 2.73
2717 2780 5.295292 CGAGACTTCCCGACTATTTACTACA 59.705 44.000 0.00 0.00 0.00 2.74
2718 2781 6.183360 CGAGACTTCCCGACTATTTACTACAA 60.183 42.308 0.00 0.00 0.00 2.41
2719 2782 7.472334 AGACTTCCCGACTATTTACTACAAA 57.528 36.000 0.00 0.00 0.00 2.83
2720 2783 7.899973 AGACTTCCCGACTATTTACTACAAAA 58.100 34.615 0.00 0.00 0.00 2.44
2721 2784 8.370182 AGACTTCCCGACTATTTACTACAAAAA 58.630 33.333 0.00 0.00 0.00 1.94
2739 2802 1.175983 AAATGTTTGCCCGGCTTCGA 61.176 50.000 11.61 0.00 35.61 3.71
2741 2804 1.656818 ATGTTTGCCCGGCTTCGATG 61.657 55.000 11.61 0.00 35.61 3.84
2787 2850 0.319555 CTTCGGTTCGCTCCAGTGAA 60.320 55.000 0.00 0.00 41.67 3.18
2814 2877 2.535331 CTTCAACCACCAAAACCAACG 58.465 47.619 0.00 0.00 0.00 4.10
2881 2946 7.693952 TGAACGAGAGGCATATACAATTTTTC 58.306 34.615 0.00 0.00 0.00 2.29
2905 2970 3.140814 GGCATGGGCTCGTTTCCC 61.141 66.667 0.00 3.07 44.17 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 0.250252 GAGCTAAGGGCATCTCCAGC 60.250 60.000 0.00 0.00 44.79 4.85
14 15 1.070445 CTGAGCTAAGGGCATCTCCAG 59.930 57.143 0.00 0.00 44.79 3.86
15 16 1.126488 CTGAGCTAAGGGCATCTCCA 58.874 55.000 0.00 0.00 44.79 3.86
16 17 1.127343 ACTGAGCTAAGGGCATCTCC 58.873 55.000 2.29 0.00 44.79 3.71
17 18 1.484240 ACACTGAGCTAAGGGCATCTC 59.516 52.381 0.00 0.00 44.79 2.75
18 19 1.209019 CACACTGAGCTAAGGGCATCT 59.791 52.381 0.00 0.00 44.79 2.90
19 20 1.065854 ACACACTGAGCTAAGGGCATC 60.066 52.381 0.00 0.00 44.79 3.91
20 21 0.987294 ACACACTGAGCTAAGGGCAT 59.013 50.000 0.00 0.00 44.79 4.40
21 22 0.035317 CACACACTGAGCTAAGGGCA 59.965 55.000 0.00 0.00 44.79 5.36
22 23 1.301677 GCACACACTGAGCTAAGGGC 61.302 60.000 0.00 0.00 42.19 5.19
23 24 0.674895 GGCACACACTGAGCTAAGGG 60.675 60.000 0.00 0.00 34.36 3.95
24 25 0.322975 AGGCACACACTGAGCTAAGG 59.677 55.000 2.29 0.00 34.36 2.69
25 26 2.175878 AAGGCACACACTGAGCTAAG 57.824 50.000 0.00 0.00 34.36 2.18
26 27 2.618241 CAAAAGGCACACACTGAGCTAA 59.382 45.455 0.00 0.00 34.36 3.09
27 28 2.221169 CAAAAGGCACACACTGAGCTA 58.779 47.619 0.00 0.00 34.36 3.32
28 29 1.027357 CAAAAGGCACACACTGAGCT 58.973 50.000 0.00 0.00 34.36 4.09
29 30 0.740737 ACAAAAGGCACACACTGAGC 59.259 50.000 0.00 0.00 33.11 4.26
30 31 2.016318 TGACAAAAGGCACACACTGAG 58.984 47.619 0.00 0.00 0.00 3.35
31 32 2.121291 TGACAAAAGGCACACACTGA 57.879 45.000 0.00 0.00 0.00 3.41
32 33 3.565482 ACTATGACAAAAGGCACACACTG 59.435 43.478 0.00 0.00 0.00 3.66
95 96 7.959718 TGTATAGTTTTCGTTCATCGTCTAC 57.040 36.000 0.00 0.00 40.80 2.59
141 142 9.777008 TGGAAAACTGGGAAAGGTAAAATATAT 57.223 29.630 0.00 0.00 0.00 0.86
142 143 9.250246 CTGGAAAACTGGGAAAGGTAAAATATA 57.750 33.333 0.00 0.00 0.00 0.86
143 144 7.733047 ACTGGAAAACTGGGAAAGGTAAAATAT 59.267 33.333 0.00 0.00 0.00 1.28
144 145 7.014808 CACTGGAAAACTGGGAAAGGTAAAATA 59.985 37.037 0.00 0.00 0.00 1.40
145 146 5.903010 ACTGGAAAACTGGGAAAGGTAAAAT 59.097 36.000 0.00 0.00 0.00 1.82
216 217 1.635844 TAGTTATGTCGGCTGCGTTG 58.364 50.000 0.00 0.00 0.00 4.10
257 259 6.092259 GTGGTAGTTTTGCTTATCACGAGATT 59.908 38.462 0.00 0.00 35.67 2.40
340 342 3.900116 CGATTTAGTTTTGTGCACGAGTG 59.100 43.478 13.13 0.00 0.00 3.51
557 561 9.946165 CAGAGAAGATACGTTTGTGTGTATATA 57.054 33.333 0.00 0.00 31.67 0.86
559 563 8.047413 TCAGAGAAGATACGTTTGTGTGTATA 57.953 34.615 0.00 0.00 31.67 1.47
561 565 6.321848 TCAGAGAAGATACGTTTGTGTGTA 57.678 37.500 0.00 0.00 0.00 2.90
592 632 2.235402 CCCACCTGTCGGTAATACACTT 59.765 50.000 0.00 0.00 43.24 3.16
600 640 1.549203 GTTAGTCCCACCTGTCGGTA 58.451 55.000 0.00 0.00 43.24 4.02
685 725 3.074412 ACTGCGAACCGATCTTGATTTT 58.926 40.909 0.00 0.00 0.00 1.82
687 727 2.002586 CACTGCGAACCGATCTTGATT 58.997 47.619 0.00 0.00 0.00 2.57
688 728 1.645034 CACTGCGAACCGATCTTGAT 58.355 50.000 0.00 0.00 0.00 2.57
767 807 3.268023 ACAGGAAGCTGTTGCCTATAC 57.732 47.619 0.00 0.00 40.80 1.47
998 1042 1.403323 GCAAGCCTAGAAACTCCATGC 59.597 52.381 0.00 0.00 0.00 4.06
1039 1083 2.264794 GGCGACAACTCCGACCAT 59.735 61.111 0.00 0.00 0.00 3.55
1133 1177 6.116126 GCCTAATTAGACCTCATTTCTGTGT 58.884 40.000 14.28 0.00 0.00 3.72
1151 1195 1.063417 AGCTCAAATGGCTGGCCTAAT 60.063 47.619 13.05 0.00 38.73 1.73
1163 1207 0.729116 CGGCGATGAACAGCTCAAAT 59.271 50.000 0.00 0.00 37.67 2.32
1190 1234 9.708222 CACATATCACAAAGATTAGTTAGCAAC 57.292 33.333 0.00 0.00 38.19 4.17
1217 1261 2.043604 CTCCTCCTGCACACACCACA 62.044 60.000 0.00 0.00 0.00 4.17
1562 1612 1.419107 GGCCAACGCGTTAGAGCTAC 61.419 60.000 28.49 16.27 35.02 3.58
1563 1613 1.153706 GGCCAACGCGTTAGAGCTA 60.154 57.895 28.49 0.00 35.02 3.32
1949 2003 8.855279 CGAAGATAGTAAAAGTGAAGAGACTTG 58.145 37.037 0.00 0.00 36.28 3.16
2069 2130 2.224917 TGAGGGGAGCAAAAACGGTAAT 60.225 45.455 0.00 0.00 0.00 1.89
2142 2204 2.093658 TCAAACCTAAGGATCTCCGCAC 60.094 50.000 0.00 0.00 42.08 5.34
2185 2247 3.051210 CTCGTCACCACAGCCAGA 58.949 61.111 0.00 0.00 0.00 3.86
2297 2359 3.193479 CCAAGCAAAGGTAGAACAATCCC 59.807 47.826 0.00 0.00 0.00 3.85
2339 2401 4.260985 TCTTGAAGCTTGACAAGTTGACA 58.739 39.130 21.06 6.93 42.50 3.58
2340 2402 4.882671 TCTTGAAGCTTGACAAGTTGAC 57.117 40.909 21.06 3.81 42.50 3.18
2341 2403 6.455360 AAATCTTGAAGCTTGACAAGTTGA 57.545 33.333 21.06 8.53 42.50 3.18
2342 2404 7.096312 GCTAAAATCTTGAAGCTTGACAAGTTG 60.096 37.037 21.06 0.00 42.50 3.16
2343 2405 6.920210 GCTAAAATCTTGAAGCTTGACAAGTT 59.080 34.615 21.06 13.73 42.50 2.66
2344 2406 6.442112 GCTAAAATCTTGAAGCTTGACAAGT 58.558 36.000 21.06 10.55 42.50 3.16
2345 2407 5.860716 GGCTAAAATCTTGAAGCTTGACAAG 59.139 40.000 17.64 17.64 43.03 3.16
2346 2408 5.301551 TGGCTAAAATCTTGAAGCTTGACAA 59.698 36.000 2.10 1.48 35.30 3.18
2366 2428 2.158696 GCCATTCATTCCTACTCTGGCT 60.159 50.000 3.51 0.00 43.34 4.75
2380 2442 3.581024 GCATCAAAGTGAAGCCATTCA 57.419 42.857 0.00 0.00 43.20 2.57
2496 2558 4.135153 CCTCCACACGCTCTCCGG 62.135 72.222 0.00 0.00 42.52 5.14
2502 2564 1.686325 AAGACACACCTCCACACGCT 61.686 55.000 0.00 0.00 0.00 5.07
2526 2588 2.966732 GCCGAACCCCACTGGATCA 61.967 63.158 0.00 0.00 35.70 2.92
2527 2589 2.124695 GCCGAACCCCACTGGATC 60.125 66.667 0.00 0.00 38.00 3.36
2538 2600 4.379143 GACAAACGCCGGCCGAAC 62.379 66.667 30.73 17.92 41.02 3.95
2544 2606 2.663852 ACCGAAGACAAACGCCGG 60.664 61.111 0.00 0.00 41.38 6.13
2567 2629 0.179171 ACGACGACTGTATCCAAGCG 60.179 55.000 0.00 0.00 0.00 4.68
2576 2638 0.791983 CGCATACGAACGACGACTGT 60.792 55.000 0.00 0.00 45.77 3.55
2598 2660 4.702831 TCTAATCTGCAGACAAACACACA 58.297 39.130 20.97 0.00 0.00 3.72
2615 2677 6.426646 AAGCGTAGATTGGAAGGATCTAAT 57.573 37.500 0.00 0.00 39.22 1.73
2639 2701 1.057636 GCAACGTCGTCGATGAAGAA 58.942 50.000 24.48 0.00 41.24 2.52
2718 2781 1.871822 CGAAGCCGGGCAAACATTTTT 60.872 47.619 23.09 3.40 0.00 1.94
2719 2782 0.319469 CGAAGCCGGGCAAACATTTT 60.319 50.000 23.09 4.24 0.00 1.82
2720 2783 1.175983 TCGAAGCCGGGCAAACATTT 61.176 50.000 23.09 5.07 36.24 2.32
2721 2784 0.965363 ATCGAAGCCGGGCAAACATT 60.965 50.000 23.09 5.90 36.24 2.71
2722 2785 1.378514 ATCGAAGCCGGGCAAACAT 60.379 52.632 23.09 4.73 36.24 2.71
2723 2786 2.033448 ATCGAAGCCGGGCAAACA 59.967 55.556 23.09 2.19 36.24 2.83
2736 2799 3.452621 ATCGCCCCTCCCTCATCGA 62.453 63.158 0.00 0.00 0.00 3.59
2739 2802 2.143419 GTCATCGCCCCTCCCTCAT 61.143 63.158 0.00 0.00 0.00 2.90
2741 2804 3.917760 CGTCATCGCCCCTCCCTC 61.918 72.222 0.00 0.00 0.00 4.30
2787 2850 2.969821 TTGGTGGTTGAAGGCTACAT 57.030 45.000 0.00 0.00 0.00 2.29
2843 2906 4.382470 CCTCTCGTTCATTCACCTTCTCAT 60.382 45.833 0.00 0.00 0.00 2.90
2881 2946 2.693762 CGAGCCCATGCCACAACAG 61.694 63.158 0.00 0.00 38.69 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.