AutoCloner

Multiple sequence alignment - TraesCS3B01G216800

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BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G216800	chr3B	100.000	8559	0	0	1	8559	257775150	257783708	0.000000e+00	15806.0
1	TraesCS3B01G216800	chr3B	95.000	620	31	0	321	940	141629537	141630156	0.000000e+00	974.0
2	TraesCS3B01G216800	chr3B	94.023	619	37	0	321	939	817225147	817224529	0.000000e+00	939.0
3	TraesCS3B01G216800	chr3B	94.086	186	11	0	8374	8559	257816535	257816720	5.060000e-72	283.0
4	TraesCS3B01G216800	chr3B	93.583	187	11	1	8374	8559	566730517	566730703	2.350000e-70	278.0
5	TraesCS3B01G216800	chr3B	100.000	85	0	0	2250	2334	427633822	427633738	3.200000e-34	158.0
6	TraesCS3B01G216800	chr3B	94.737	95	4	1	2239	2333	623657660	623657567	6.920000e-31	147.0
7	TraesCS3B01G216800	chr3B	83.824	68	7	3	2102	2169	715222490	715222427	2.580000e-05	62.1
8	TraesCS3B01G216800	chr3D	94.703	2190	75	17	4623	6776	179913489	179915673	0.000000e+00	3363.0
9	TraesCS3B01G216800	chr3D	96.860	1274	38	1	982	2253	179911157	179912430	0.000000e+00	2130.0
10	TraesCS3B01G216800	chr3D	91.561	948	71	5	3670	4613	498826004	498826946	0.000000e+00	1299.0
11	TraesCS3B01G216800	chr3D	95.125	800	34	2	2333	3132	179912430	179913224	0.000000e+00	1256.0
12	TraesCS3B01G216800	chr3D	86.865	807	62	21	6960	7751	179915732	179916509	0.000000e+00	863.0
13	TraesCS3B01G216800	chr3D	87.090	488	52	8	1032	1513	600581231	600581713	7.560000e-150	542.0
14	TraesCS3B01G216800	chr3D	92.042	289	15	1	3155	3435	179913202	179913490	4.810000e-107	399.0
15	TraesCS3B01G216800	chr3D	87.773	229	18	4	2	227	179910658	179910879	8.520000e-65	259.0
16	TraesCS3B01G216800	chr3D	93.252	163	10	1	6802	6964	68383351	68383190	1.110000e-58	239.0
17	TraesCS3B01G216800	chr3D	82.911	158	18	4	1671	1826	600581709	600581859	5.390000e-27	134.0
18	TraesCS3B01G216800	chr3A	96.805	1252	37	1	982	2233	223521202	223522450	0.000000e+00	2087.0
19	TraesCS3B01G216800	chr3A	93.447	1175	45	10	6782	7947	223533086	223534237	0.000000e+00	1714.0
20	TraesCS3B01G216800	chr3A	92.641	924	39	10	5387	6309	223531583	223532478	0.000000e+00	1303.0
21	TraesCS3B01G216800	chr3A	93.974	531	29	2	2333	2861	223523792	223524321	0.000000e+00	800.0
22	TraesCS3B01G216800	chr3A	92.550	349	17	4	6436	6779	223532708	223533052	7.720000e-135	492.0
23	TraesCS3B01G216800	chr3A	89.931	288	16	5	2845	3132	223524506	223524780	8.170000e-95	359.0
24	TraesCS3B01G216800	chr3A	88.581	289	24	3	3155	3435	223524758	223525045	8.230000e-90	342.0
25	TraesCS3B01G216800	chr3A	96.875	128	4	0	7998	8125	223534536	223534663	1.870000e-51	215.0
26	TraesCS3B01G216800	chr3A	92.000	150	10	2	4737	4884	655515508	655515657	8.710000e-50	209.0
27	TraesCS3B01G216800	chr3A	94.068	118	5	2	4774	4889	645561474	645561591	2.460000e-40	178.0
28	TraesCS3B01G216800	chr3A	87.582	153	12	7	1838	1988	457913205	457913352	4.110000e-38	171.0
29	TraesCS3B01G216800	chr3A	87.417	151	13	3	4740	4884	107736853	107736703	1.480000e-37	169.0
30	TraesCS3B01G216800	chr3A	90.909	121	11	0	5290	5410	223525769	223525889	6.870000e-36	163.0
31	TraesCS3B01G216800	chr3A	92.784	97	7	0	6324	6420	223532532	223532628	3.220000e-29	141.0
32	TraesCS3B01G216800	chr3A	84.000	75	6	2	2102	2170	630362464	630362390	5.540000e-07	67.6
33	TraesCS3B01G216800	chr1B	88.963	1205	95	18	3448	4618	231624743	231623543	0.000000e+00	1454.0
34	TraesCS3B01G216800	chr1B	80.952	483	79	9	997	1473	131506486	131506961	3.770000e-98	370.0
35	TraesCS3B01G216800	chr1B	84.974	193	20	9	8184	8372	62085717	62085530	4.080000e-43	187.0
36	TraesCS3B01G216800	chr1B	92.929	99	7	0	2236	2334	611133041	611132943	2.490000e-30	145.0
37	TraesCS3B01G216800	chr1B	86.822	129	13	4	8238	8364	385767774	385767900	3.220000e-29	141.0
38	TraesCS3B01G216800	chr2D	88.220	1180	93	19	3443	4617	10800821	10801959	0.000000e+00	1367.0
39	TraesCS3B01G216800	chr2D	90.690	956	79	6	3668	4618	44467006	44466056	0.000000e+00	1264.0
40	TraesCS3B01G216800	chr2D	91.304	207	18	0	3443	3649	10494883	10495089	5.060000e-72	283.0
41	TraesCS3B01G216800	chr2D	91.304	207	18	0	3443	3649	10511934	10512140	5.060000e-72	283.0
42	TraesCS3B01G216800	chr2D	92.727	165	10	1	6802	6964	299891715	299891551	3.990000e-58	237.0
43	TraesCS3B01G216800	chr2D	87.879	99	11	1	4777	4874	207244940	207244842	1.950000e-21	115.0
44	TraesCS3B01G216800	chr7D	87.531	1203	112	17	3443	4614	163118457	163119652	0.000000e+00	1356.0
45	TraesCS3B01G216800	chr7D	91.149	949	75	6	3670	4613	249619244	249618300	0.000000e+00	1279.0
46	TraesCS3B01G216800	chr7D	88.000	150	15	3	4737	4884	120323482	120323630	3.180000e-39	174.0
47	TraesCS3B01G216800	chr7D	93.860	114	5	2	4774	4885	50058861	50058974	4.110000e-38	171.0
48	TraesCS3B01G216800	chr7D	94.681	94	5	0	2241	2334	49828765	49828858	6.920000e-31	147.0
49	TraesCS3B01G216800	chr7D	82.927	82	8	2	2095	2170	634214264	634214345	1.540000e-07	69.4
50	TraesCS3B01G216800	chr1A	91.263	950	76	4	3670	4613	538778132	538777184	0.000000e+00	1288.0
51	TraesCS3B01G216800	chr1A	88.789	223	22	3	3443	3665	538778428	538778209	3.940000e-68	270.0
52	TraesCS3B01G216800	chr1A	93.860	114	5	2	4777	4888	399890969	399890856	4.110000e-38	171.0
53	TraesCS3B01G216800	chr1A	94.595	111	4	2	4777	4885	580278677	580278567	4.110000e-38	171.0
54	TraesCS3B01G216800	chr1A	94.545	110	4	2	4777	4884	32473341	32473232	1.480000e-37	169.0
55	TraesCS3B01G216800	chr1D	90.832	949	77	6	3670	4613	461082939	461081996	0.000000e+00	1262.0
56	TraesCS3B01G216800	chr1D	90.491	957	81	7	3663	4613	346391799	346392751	0.000000e+00	1254.0
57	TraesCS3B01G216800	chr1D	92.398	171	11	1	6799	6967	324412392	324412222	8.580000e-60	243.0
58	TraesCS3B01G216800	chr1D	93.805	113	5	2	4774	4884	366097566	366097678	1.480000e-37	169.0
59	TraesCS3B01G216800	chr1D	93.805	113	5	2	4774	4884	462960449	462960561	1.480000e-37	169.0
60	TraesCS3B01G216800	chr1D	92.982	114	6	2	4774	4885	159912268	159912381	1.910000e-36	165.0
61	TraesCS3B01G216800	chr6D	90.641	951	78	8	3670	4613	10680374	10679428	0.000000e+00	1253.0
62	TraesCS3B01G216800	chr6D	90.292	958	84	6	3665	4617	472758175	472759128	0.000000e+00	1245.0
63	TraesCS3B01G216800	chr6D	90.164	183	13	4	6794	6973	90135058	90134878	5.170000e-57	233.0
64	TraesCS3B01G216800	chr6D	94.595	111	4	2	4777	4885	317477320	317477210	4.110000e-38	171.0
65	TraesCS3B01G216800	chr6D	94.545	110	4	2	4777	4884	44244532	44244423	1.480000e-37	169.0
66	TraesCS3B01G216800	chr6D	93.805	113	5	2	4774	4884	128903128	128903240	1.480000e-37	169.0
67	TraesCS3B01G216800	chr6D	94.444	108	4	2	4779	4884	163832624	163832517	1.910000e-36	165.0
68	TraesCS3B01G216800	chr6D	92.105	114	7	2	4774	4885	459048295	459048408	8.890000e-35	159.0
69	TraesCS3B01G216800	chr6D	90.756	119	9	2	4777	4893	219787227	219787345	3.200000e-34	158.0
70	TraesCS3B01G216800	chr6A	95.800	619	25	1	321	939	443412568	443413185	0.000000e+00	998.0
71	TraesCS3B01G216800	chr6A	85.115	477	57	9	1049	1515	67026361	67026833	7.770000e-130	475.0
72	TraesCS3B01G216800	chr6A	89.908	109	10	1	4777	4884	562525433	562525541	1.160000e-28	139.0
73	TraesCS3B01G216800	chr6A	81.013	158	21	4	1671	1826	67026827	67026977	5.430000e-22	117.0
74	TraesCS3B01G216800	chr6A	92.308	52	2	2	2129	2180	462411533	462411484	1.190000e-08	73.1
75	TraesCS3B01G216800	chr2B	94.839	620	32	0	321	940	756569046	756568427	0.000000e+00	968.0
76	TraesCS3B01G216800	chr2B	80.715	643	95	18	997	1630	93078106	93078728	2.800000e-129	473.0
77	TraesCS3B01G216800	chr2B	84.049	489	57	15	1032	1513	25017447	25016973	1.310000e-122	451.0
78	TraesCS3B01G216800	chr2B	94.118	187	11	0	8373	8559	180225982	180226168	1.410000e-72	285.0
79	TraesCS3B01G216800	chr2B	93.583	187	12	0	8373	8559	495662978	495662792	6.540000e-71	279.0
80	TraesCS3B01G216800	chr2B	86.567	134	16	2	8238	8370	333862313	333862181	6.920000e-31	147.0
81	TraesCS3B01G216800	chr2B	81.646	158	20	5	1671	1826	25016977	25016827	1.170000e-23	122.0
82	TraesCS3B01G216800	chr7B	94.203	621	36	0	319	939	439695165	439694545	0.000000e+00	948.0
83	TraesCS3B01G216800	chr7B	83.403	476	69	8	997	1465	4971503	4971975	4.750000e-117	433.0
84	TraesCS3B01G216800	chr7B	93.583	187	12	0	8373	8559	61142478	61142292	6.540000e-71	279.0
85	TraesCS3B01G216800	chr7B	93.583	187	12	0	8373	8559	588544987	588545173	6.540000e-71	279.0
86	TraesCS3B01G216800	chr7B	94.690	113	4	2	4774	4884	609580900	609580788	3.180000e-39	174.0
87	TraesCS3B01G216800	chr7B	89.062	128	12	2	8238	8364	698511018	698511144	3.200000e-34	158.0
88	TraesCS3B01G216800	chr7B	87.313	134	15	2	8238	8370	376347463	376347331	1.490000e-32	152.0
89	TraesCS3B01G216800	chr7B	81.646	158	20	4	1671	1826	603661432	603661582	1.170000e-23	122.0
90	TraesCS3B01G216800	chr7A	94.272	611	35	0	321	931	735136343	735136953	0.000000e+00	935.0
91	TraesCS3B01G216800	chr7A	91.860	172	11	2	6795	6964	494786996	494786826	3.990000e-58	237.0
92	TraesCS3B01G216800	chr4B	93.984	615	37	0	317	931	346526644	346527258	0.000000e+00	931.0
93	TraesCS3B01G216800	chr4B	93.538	619	40	0	321	939	601780380	601779762	0.000000e+00	922.0
94	TraesCS3B01G216800	chr4B	91.371	197	17	0	8363	8559	428124735	428124931	3.940000e-68	270.0
95	TraesCS3B01G216800	chr4B	93.860	114	5	2	4774	4885	462230662	462230775	4.110000e-38	171.0
96	TraesCS3B01G216800	chr4B	92.000	100	7	1	2249	2348	471155209	471155307	1.160000e-28	139.0
97	TraesCS3B01G216800	chr4B	95.238	42	2	0	2129	2170	291880372	291880413	5.540000e-07	67.6
98	TraesCS3B01G216800	chr5B	93.440	625	41	0	320	944	403111617	403110993	0.000000e+00	928.0
99	TraesCS3B01G216800	chr5B	93.583	187	12	0	8373	8559	572340382	572340568	6.540000e-71	279.0
100	TraesCS3B01G216800	chr5B	94.690	113	4	2	4777	4887	639681248	639681136	3.180000e-39	174.0
101	TraesCS3B01G216800	chr5B	91.089	101	9	0	2234	2334	696014480	696014380	4.170000e-28	137.0
102	TraesCS3B01G216800	chr4A	85.861	488	58	8	1032	1513	583751396	583750914	7.670000e-140	508.0
103	TraesCS3B01G216800	chr4A	90.338	207	20	0	3443	3649	714811540	714811334	1.090000e-68	272.0
104	TraesCS3B01G216800	chr4A	82.278	158	19	4	1671	1826	583750918	583750768	2.510000e-25	128.0
105	TraesCS3B01G216800	chr4A	93.750	48	3	0	2129	2176	525578135	525578088	1.190000e-08	73.1
106	TraesCS3B01G216800	chr2A	82.222	405	43	19	3443	3818	11310191	11310595	1.070000e-83	322.0
107	TraesCS3B01G216800	chr5D	95.187	187	9	0	8373	8559	392097535	392097721	6.500000e-76	296.0
108	TraesCS3B01G216800	chr5D	91.813	171	11	2	6793	6961	150835560	150835729	1.440000e-57	235.0
109	TraesCS3B01G216800	chr5D	88.043	92	9	2	4793	4884	251300419	251300330	3.270000e-19	108.0
110	TraesCS3B01G216800	chrUn	90.338	207	20	0	3443	3649	390565011	390564805	1.090000e-68	272.0
111	TraesCS3B01G216800	chrUn	94.545	110	4	2	4777	4884	395339893	395339784	1.480000e-37	169.0
112	TraesCS3B01G216800	chrUn	92.982	114	6	2	4774	4885	12801844	12801957	1.910000e-36	165.0
113	TraesCS3B01G216800	chrUn	93.636	110	5	2	4777	4884	284001670	284001561	6.870000e-36	163.0
114	TraesCS3B01G216800	chrUn	95.876	97	3	1	4789	4884	220137934	220138030	1.150000e-33	156.0
115	TraesCS3B01G216800	chrUn	95.833	96	3	1	4790	4884	314724149	314724054	4.140000e-33	154.0
116	TraesCS3B01G216800	chrUn	87.218	133	16	1	8241	8372	54312744	54312876	5.350000e-32	150.0
117	TraesCS3B01G216800	chrUn	90.909	110	7	3	4777	4884	379898039	379897931	2.490000e-30	145.0
118	TraesCS3B01G216800	chrUn	90.000	110	8	3	4777	4884	379839365	379839257	1.160000e-28	139.0
119	TraesCS3B01G216800	chrUn	95.000	80	3	1	4806	4884	443322478	443322399	3.240000e-24	124.0
120	TraesCS3B01G216800	chr5A	93.452	168	10	1	6795	6961	136396770	136396937	1.840000e-61	248.0
121	TraesCS3B01G216800	chr5A	94.737	114	4	2	4774	4885	536448645	536448532	8.830000e-40	176.0
122	TraesCS3B01G216800	chr5A	95.604	91	2	2	2244	2334	207681824	207681912	2.490000e-30	145.0
123	TraesCS3B01G216800	chr5A	86.207	87	8	3	2090	2176	706657635	706657717	3.290000e-14	91.6
124	TraesCS3B01G216800	chr6B	93.252	163	9	1	6801	6961	16269667	16269829	1.110000e-58	239.0
125	TraesCS3B01G216800	chr6B	84.058	138	15	7	2218	2354	710798912	710798781	9.020000e-25	126.0
126	TraesCS3B01G216800	chr6B	84.733	131	15	5	2218	2347	711418609	711418735	9.020000e-25	126.0
127	TraesCS3B01G216800	chr6B	80.625	160	19	8	4737	4884	631953379	631953538	7.020000e-21	113.0
128	TraesCS3B01G216800	chr4D	88.742	151	14	3	4737	4885	392739303	392739452	1.900000e-41	182.0
129	TraesCS3B01G216800	chr4D	93.860	114	6	1	4772	4884	423599073	423598960	4.110000e-38	171.0
130	TraesCS3B01G216800	chr4D	93.805	113	5	2	4777	4887	405455236	405455124	1.480000e-37	169.0
131	TraesCS3B01G216800	chr4D	85.833	120	15	2	8238	8356	506215866	506215984	9.020000e-25	126.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G216800	chr3B	257775150	257783708	8558	False	15806.000000	15806	100.0000	1	8559	1	chr3B.!!$F2	8558
1	TraesCS3B01G216800	chr3B	141629537	141630156	619	False	974.000000	974	95.0000	321	940	1	chr3B.!!$F1	619
2	TraesCS3B01G216800	chr3B	817224529	817225147	618	True	939.000000	939	94.0230	321	939	1	chr3B.!!$R4	618
3	TraesCS3B01G216800	chr3D	179910658	179916509	5851	False	1378.333333	3363	92.2280	2	7751	6	chr3D.!!$F2	7749
4	TraesCS3B01G216800	chr3D	498826004	498826946	942	False	1299.000000	1299	91.5610	3670	4613	1	chr3D.!!$F1	943
5	TraesCS3B01G216800	chr3D	600581231	600581859	628	False	338.000000	542	85.0005	1032	1826	2	chr3D.!!$F3	794
6	TraesCS3B01G216800	chr3A	223531583	223534663	3080	False	773.000000	1714	93.6594	5387	8125	5	chr3A.!!$F5	2738
7	TraesCS3B01G216800	chr3A	223521202	223525889	4687	False	750.200000	2087	92.0400	982	5410	5	chr3A.!!$F4	4428
8	TraesCS3B01G216800	chr1B	231623543	231624743	1200	True	1454.000000	1454	88.9630	3448	4618	1	chr1B.!!$R2	1170
9	TraesCS3B01G216800	chr2D	10800821	10801959	1138	False	1367.000000	1367	88.2200	3443	4617	1	chr2D.!!$F3	1174
10	TraesCS3B01G216800	chr2D	44466056	44467006	950	True	1264.000000	1264	90.6900	3668	4618	1	chr2D.!!$R1	950
11	TraesCS3B01G216800	chr7D	163118457	163119652	1195	False	1356.000000	1356	87.5310	3443	4614	1	chr7D.!!$F4	1171
12	TraesCS3B01G216800	chr7D	249618300	249619244	944	True	1279.000000	1279	91.1490	3670	4613	1	chr7D.!!$R1	943
13	TraesCS3B01G216800	chr1A	538777184	538778428	1244	True	779.000000	1288	90.0260	3443	4613	2	chr1A.!!$R4	1170
14	TraesCS3B01G216800	chr1D	461081996	461082939	943	True	1262.000000	1262	90.8320	3670	4613	1	chr1D.!!$R2	943
15	TraesCS3B01G216800	chr1D	346391799	346392751	952	False	1254.000000	1254	90.4910	3663	4613	1	chr1D.!!$F2	950
16	TraesCS3B01G216800	chr6D	10679428	10680374	946	True	1253.000000	1253	90.6410	3670	4613	1	chr6D.!!$R1	943
17	TraesCS3B01G216800	chr6D	472758175	472759128	953	False	1245.000000	1245	90.2920	3665	4617	1	chr6D.!!$F4	952
18	TraesCS3B01G216800	chr6A	443412568	443413185	617	False	998.000000	998	95.8000	321	939	1	chr6A.!!$F1	618
19	TraesCS3B01G216800	chr6A	67026361	67026977	616	False	296.000000	475	83.0640	1049	1826	2	chr6A.!!$F3	777
20	TraesCS3B01G216800	chr2B	756568427	756569046	619	True	968.000000	968	94.8390	321	940	1	chr2B.!!$R3	619
21	TraesCS3B01G216800	chr2B	93078106	93078728	622	False	473.000000	473	80.7150	997	1630	1	chr2B.!!$F1	633
22	TraesCS3B01G216800	chr2B	25016827	25017447	620	True	286.500000	451	82.8475	1032	1826	2	chr2B.!!$R4	794
23	TraesCS3B01G216800	chr7B	439694545	439695165	620	True	948.000000	948	94.2030	319	939	1	chr7B.!!$R3	620
24	TraesCS3B01G216800	chr7A	735136343	735136953	610	False	935.000000	935	94.2720	321	931	1	chr7A.!!$F1	610
25	TraesCS3B01G216800	chr4B	346526644	346527258	614	False	931.000000	931	93.9840	317	931	1	chr4B.!!$F2	614
26	TraesCS3B01G216800	chr4B	601779762	601780380	618	True	922.000000	922	93.5380	321	939	1	chr4B.!!$R1	618
27	TraesCS3B01G216800	chr5B	403110993	403111617	624	True	928.000000	928	93.4400	320	944	1	chr5B.!!$R1	624
28	TraesCS3B01G216800	chr4A	583750768	583751396	628	True	318.000000	508	84.0695	1032	1826	2	chr4A.!!$R3	794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
50	51	0.032678	CGAAGGCGTGGATGAGCTAT	59.967	55.000	0.00	0.00	0.00	2.97	F
254	430	0.103755	TTGCAAAGCCGCATGTTCAA	59.896	45.000	0.00	0.00	42.62	2.69	F
467	644	0.386113	CCGAGGTAGCTAGCACTTCC	59.614	60.000	24.01	12.74	0.00	3.46	F
1256	1442	0.458716	GGTACGAGGAGCTGCACTTC	60.459	60.000	8.35	0.00	0.00	3.01	F
1497	1689	0.957395	AGTACGAGGACGCGGAGAAA	60.957	55.000	12.47	0.00	43.96	2.52	F
1600	1792	0.994995	CAGAAATGAGCGTGTCTCCG	59.005	55.000	0.00	0.00	41.18	4.63	F
3303	5025	1.214589	CTCTGTGCATGCCAAAGCC	59.785	57.895	16.68	0.00	38.69	4.35	F
3942	5770	0.179145	CGCCGTTACCTCGATGAAGT	60.179	55.000	0.00	0.00	0.00	3.01	F
4024	5853	1.032794	CTTCCAGATCGGACGATGGA	58.967	55.000	12.40	12.04	46.36	3.41	F
4810	6668	1.401905	GAAATGTAGGGAAAGGCTGCG	59.598	52.381	0.00	0.00	0.00	5.18	F
6337	8493	0.181114	AGAGCTTGCCACAGTCACAA	59.819	50.000	0.00	0.00	0.00	3.33	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1307	1494	1.160137	AGCAAGAAGACGGCAATCAC	58.840	50.000	0.00	0.00	0.00	3.06	R
2253	3769	1.424638	ACATTATGGGACGGAGGGAG	58.575	55.000	0.00	0.00	0.00	4.30	R
2315	3831	0.035458	GCTCCCTCCGTCCCATAATG	59.965	60.000	0.00	0.00	0.00	1.90	R
2916	4638	0.036294	GCACACTAGGGGTCAAGGTC	60.036	60.000	0.00	0.00	0.00	3.85	R
3303	5025	2.707849	GCAAGGGAGTGCTGGCATG	61.708	63.158	0.00	0.00	41.51	4.06	R
3433	5163	4.157120	GCGGGAGGCTAAGGCGAA	62.157	66.667	0.00	0.00	39.81	4.70	R
4163	5994	0.035725	CCAAGCAGGCATGACTCAGA	60.036	55.000	0.00	0.00	0.00	3.27	R
5051	7160	0.388520	GCAAGATGCCCGGTCAAAAC	60.389	55.000	0.00	0.00	37.42	2.43	R
5802	7919	0.800012	CATGCTTTGGCCAACATTGC	59.200	50.000	20.35	19.52	37.74	3.56	R
6527	8749	0.392998	CAACCATTGTCCTCTCCCCG	60.393	60.000	0.00	0.00	0.00	5.73	R
8029	10571	0.252197	GGTGGGAGCGTGGATAGTTT	59.748	55.000	0.00	0.00	0.00	2.66	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
23	24	2.387309	ATGCAATGACGAGCTTCGG	58.613	52.632	9.75	0.00	45.59	4.30
29	30	4.117661	GACGAGCTTCGGAGGCGT	62.118	66.667	6.45	0.00	45.59	5.68
50	51	0.032678	CGAAGGCGTGGATGAGCTAT	59.967	55.000	0.00	0.00	0.00	2.97
53	54	1.963338	GGCGTGGATGAGCTATGGC	60.963	63.158	0.00	0.00	39.06	4.40
96	97	0.250124	TCCTACCACACCAAGCAACG	60.250	55.000	0.00	0.00	0.00	4.10
98	99	1.228003	TACCACACCAAGCAACGGG	60.228	57.895	0.00	0.00	0.00	5.28
116	117	4.690122	ACGGGAATAGATAAAGTTGGACG	58.310	43.478	0.00	0.00	0.00	4.79
119	120	5.451520	CGGGAATAGATAAAGTTGGACGAGT	60.452	44.000	0.00	0.00	0.00	4.18
192	196	7.955750	AGAAAAAGAATAAGGGGAAGGAAATGA	59.044	33.333	0.00	0.00	0.00	2.57
197	201	2.834638	AGGGGAAGGAAATGACATGG	57.165	50.000	0.00	0.00	0.00	3.66
215	219	1.203994	TGGTACTCTACTCGCAAAGCC	59.796	52.381	0.00	0.00	0.00	4.35
227	231	2.878406	TCGCAAAGCCCATATTAAGAGC	59.122	45.455	0.00	0.00	0.00	4.09
239	415	3.591196	ATTAAGAGCGGCATTTTTGCA	57.409	38.095	1.45	0.00	36.33	4.08
254	430	0.103755	TTGCAAAGCCGCATGTTCAA	59.896	45.000	0.00	0.00	42.62	2.69
275	452	3.782889	AGTGCAAATAGCCGATTTTCC	57.217	42.857	0.00	0.00	44.83	3.13
277	454	2.427095	GTGCAAATAGCCGATTTTCCCT	59.573	45.455	0.00	0.00	44.83	4.20
285	462	2.026905	GCCGATTTTCCCTATGCCCAA	61.027	52.381	0.00	0.00	0.00	4.12
375	552	7.730364	AACTTTGTCATAAAGTGAACTCGAT	57.270	32.000	0.00	0.00	40.10	3.59
462	639	2.050350	AACGCCGAGGTAGCTAGCA	61.050	57.895	24.01	0.00	0.00	3.49
467	644	0.386113	CCGAGGTAGCTAGCACTTCC	59.614	60.000	24.01	12.74	0.00	3.46
601	778	2.644212	CCTCAGCTGCCAGAGACGT	61.644	63.158	18.02	0.00	33.74	4.34
645	822	2.547026	GCGTTTCCGGCCTTCTTAA	58.453	52.632	0.00	0.00	33.68	1.85
657	834	2.672714	CCTTCTTAAAAACGCCAAGGC	58.327	47.619	0.00	0.00	37.85	4.35
662	839	2.785713	TAAAAACGCCAAGGCAAGAC	57.214	45.000	12.19	0.00	42.06	3.01
675	852	3.097614	AGGCAAGACACTACTCGGTAAT	58.902	45.455	0.00	0.00	0.00	1.89
825	1002	1.677633	GGGCGTTGCTATGTTGGGT	60.678	57.895	0.00	0.00	0.00	4.51
902	1079	4.213270	TCATGTCGAGTTCATTTTGTGACC	59.787	41.667	0.00	0.00	36.32	4.02
945	1122	2.116556	TGAAAAAGGCCCCCGACC	59.883	61.111	0.00	0.00	0.00	4.79
959	1136	4.620937	GACCGCCGGGGCTTATCC	62.621	72.222	14.15	0.00	38.83	2.59
963	1140	4.990553	GCCGGGGCTTATCCGCTC	62.991	72.222	2.18	0.00	45.60	5.03
964	1141	3.234730	CCGGGGCTTATCCGCTCT	61.235	66.667	0.00	0.00	45.60	4.09
965	1142	2.340443	CGGGGCTTATCCGCTCTC	59.660	66.667	0.00	0.00	44.98	3.20
966	1143	2.340443	GGGGCTTATCCGCTCTCG	59.660	66.667	0.00	0.00	43.89	4.04
977	1154	4.803426	GCTCTCGGACCGTGCCTG	62.803	72.222	14.79	6.45	0.00	4.85
978	1155	4.803426	CTCTCGGACCGTGCCTGC	62.803	72.222	14.79	0.00	0.00	4.85
980	1157	4.379243	CTCGGACCGTGCCTGCTT	62.379	66.667	14.79	0.00	0.00	3.91
1022	1200	3.249189	TCGCTCCCCCAAACTGCT	61.249	61.111	0.00	0.00	0.00	4.24
1185	1367	1.748122	CCAAGCAGCGCTTCCTGAT	60.748	57.895	7.50	0.00	46.77	2.90
1256	1442	0.458716	GGTACGAGGAGCTGCACTTC	60.459	60.000	8.35	0.00	0.00	3.01
1307	1494	1.673168	GCTCATCCAGCTGGGTAAAG	58.327	55.000	32.23	24.74	45.83	1.85
1497	1689	0.957395	AGTACGAGGACGCGGAGAAA	60.957	55.000	12.47	0.00	43.96	2.52
1542	1734	2.436115	GGCACTACCAAGGTCGGC	60.436	66.667	0.00	0.00	38.86	5.54
1600	1792	0.994995	CAGAAATGAGCGTGTCTCCG	59.005	55.000	0.00	0.00	41.18	4.63
1736	1930	5.388164	CCGTTCAACTTCTTTTACTAGTCGC	60.388	44.000	0.00	0.00	0.00	5.19
1749	1943	2.363680	ACTAGTCGCTGGATGATTCAGG	59.636	50.000	2.38	0.00	33.16	3.86
1904	2098	7.047271	TGCAGCACATTATCTATAACAACTCA	58.953	34.615	0.00	0.00	0.00	3.41
2042	2236	6.364568	TGCTGTATATGATGCTATGAGGTT	57.635	37.500	0.00	0.00	0.00	3.50
2104	2298	1.737793	GCATGTACTCCCTTTGTTCCG	59.262	52.381	0.00	0.00	0.00	4.30
2115	2309	5.134661	TCCCTTTGTTCCGAAATAAGTGTT	58.865	37.500	0.00	0.00	0.00	3.32
2127	2321	5.394322	CGAAATAAGTGTTGTGGTTTTCGTC	59.606	40.000	0.00	0.00	39.16	4.20
2139	2333	5.644636	TGTGGTTTTCGTCTGAACTAAAACT	59.355	36.000	14.22	0.00	44.39	2.66
2141	2335	7.121911	GTGGTTTTCGTCTGAACTAAAACTAC	58.878	38.462	14.41	14.41	45.75	2.73
2254	3770	9.570468	TTAACCGATCATGACTTCTATACTACT	57.430	33.333	0.00	0.00	0.00	2.57
2255	3771	7.675962	ACCGATCATGACTTCTATACTACTC	57.324	40.000	0.00	0.00	0.00	2.59
2256	3772	6.655848	ACCGATCATGACTTCTATACTACTCC	59.344	42.308	0.00	0.00	0.00	3.85
2257	3773	6.094325	CCGATCATGACTTCTATACTACTCCC	59.906	46.154	0.00	0.00	0.00	4.30
2258	3774	6.882140	CGATCATGACTTCTATACTACTCCCT	59.118	42.308	0.00	0.00	0.00	4.20
2259	3775	7.065324	CGATCATGACTTCTATACTACTCCCTC	59.935	44.444	0.00	0.00	0.00	4.30
2260	3776	6.544650	TCATGACTTCTATACTACTCCCTCC	58.455	44.000	0.00	0.00	0.00	4.30
2261	3777	4.970711	TGACTTCTATACTACTCCCTCCG	58.029	47.826	0.00	0.00	0.00	4.63
2262	3778	4.411540	TGACTTCTATACTACTCCCTCCGT	59.588	45.833	0.00	0.00	0.00	4.69
2263	3779	4.971939	ACTTCTATACTACTCCCTCCGTC	58.028	47.826	0.00	0.00	0.00	4.79
2264	3780	4.202451	ACTTCTATACTACTCCCTCCGTCC	60.202	50.000	0.00	0.00	0.00	4.79
2265	3781	2.641815	TCTATACTACTCCCTCCGTCCC	59.358	54.545	0.00	0.00	0.00	4.46
2266	3782	1.229131	ATACTACTCCCTCCGTCCCA	58.771	55.000	0.00	0.00	0.00	4.37
2267	3783	1.229131	TACTACTCCCTCCGTCCCAT	58.771	55.000	0.00	0.00	0.00	4.00
2268	3784	1.229131	ACTACTCCCTCCGTCCCATA	58.771	55.000	0.00	0.00	0.00	2.74
2269	3785	1.572415	ACTACTCCCTCCGTCCCATAA	59.428	52.381	0.00	0.00	0.00	1.90
2270	3786	2.179424	ACTACTCCCTCCGTCCCATAAT	59.821	50.000	0.00	0.00	0.00	1.28
2271	3787	1.424638	ACTCCCTCCGTCCCATAATG	58.575	55.000	0.00	0.00	0.00	1.90
2272	3788	1.344087	ACTCCCTCCGTCCCATAATGT	60.344	52.381	0.00	0.00	0.00	2.71
2273	3789	2.090943	ACTCCCTCCGTCCCATAATGTA	60.091	50.000	0.00	0.00	0.00	2.29
2274	3790	2.969950	CTCCCTCCGTCCCATAATGTAA	59.030	50.000	0.00	0.00	0.00	2.41
2275	3791	2.969950	TCCCTCCGTCCCATAATGTAAG	59.030	50.000	0.00	0.00	0.00	2.34
2276	3792	2.969950	CCCTCCGTCCCATAATGTAAGA	59.030	50.000	0.00	0.00	0.00	2.10
2277	3793	3.244112	CCCTCCGTCCCATAATGTAAGAC	60.244	52.174	0.00	0.00	0.00	3.01
2279	3795	3.025978	TCCGTCCCATAATGTAAGACGT	58.974	45.455	9.63	0.00	46.62	4.34
2280	3796	3.448301	TCCGTCCCATAATGTAAGACGTT	59.552	43.478	9.63	0.00	46.62	3.99
2281	3797	4.081531	TCCGTCCCATAATGTAAGACGTTT	60.082	41.667	9.63	0.00	46.62	3.60
2282	3798	4.632688	CCGTCCCATAATGTAAGACGTTTT	59.367	41.667	9.63	0.00	46.62	2.43
2283	3799	5.122711	CCGTCCCATAATGTAAGACGTTTTT	59.877	40.000	9.63	0.00	46.62	1.94
2328	3844	3.720949	CGTCTTACATTATGGGACGGA	57.279	47.619	20.50	2.30	43.69	4.69
2329	3845	3.639538	CGTCTTACATTATGGGACGGAG	58.360	50.000	20.50	2.74	43.69	4.63
2330	3846	3.552273	CGTCTTACATTATGGGACGGAGG	60.552	52.174	20.50	5.87	43.69	4.30
2331	3847	2.969950	TCTTACATTATGGGACGGAGGG	59.030	50.000	0.00	0.00	0.00	4.30
2332	3848	2.779429	TACATTATGGGACGGAGGGA	57.221	50.000	0.00	0.00	0.00	4.20
2341	3857	2.443016	ACGGAGGGAGCTGCTAGG	60.443	66.667	0.15	0.00	0.00	3.02
2514	4030	9.694137	GAACTTACTGTTACTGTAGATGAAGTT	57.306	33.333	15.16	15.16	39.30	2.66
2521	4037	7.027760	TGTTACTGTAGATGAAGTTTAGAGCG	58.972	38.462	0.00	0.00	0.00	5.03
2543	4059	5.111293	CGATTTTGCCTTTGCCTTCATAAT	58.889	37.500	0.00	0.00	36.33	1.28
2576	4092	4.142315	GGTGGACTATTTCTACGCTGTGTA	60.142	45.833	0.64	0.64	36.56	2.90
2726	4245	2.484264	GCTCGGCTTACTCACAAATGTT	59.516	45.455	0.00	0.00	0.00	2.71
2822	4343	6.183360	CCACATAGTTTACCCTCATCTTCGTA	60.183	42.308	0.00	0.00	0.00	3.43
2870	4592	1.890876	CAGGGTTGTTCGATGTGGAA	58.109	50.000	0.00	0.00	0.00	3.53
2916	4638	3.768757	TGGAACAAGCCCCAAATAATCTG	59.231	43.478	0.00	0.00	31.92	2.90
2973	4695	7.640597	TGACATAGAAGAGAGGATAAAACGA	57.359	36.000	0.00	0.00	0.00	3.85
2974	4696	7.481642	TGACATAGAAGAGAGGATAAAACGAC	58.518	38.462	0.00	0.00	0.00	4.34
3059	4781	1.422402	GTCACAACCCCCAACTCCTTA	59.578	52.381	0.00	0.00	0.00	2.69
3088	4810	3.833650	ACTCATCAATTGCACCCAATTCA	59.166	39.130	0.00	0.00	45.99	2.57
3119	4841	5.680619	TCAACTTGAACTGTGTTATGGACT	58.319	37.500	0.00	0.00	0.00	3.85
3120	4842	5.527214	TCAACTTGAACTGTGTTATGGACTG	59.473	40.000	0.00	0.00	0.00	3.51
3129	4851	5.717178	ACTGTGTTATGGACTGACACTATCT	59.283	40.000	7.29	0.00	43.06	1.98
3130	4852	6.211584	ACTGTGTTATGGACTGACACTATCTT	59.788	38.462	7.29	0.00	43.06	2.40
3131	4853	7.004555	TGTGTTATGGACTGACACTATCTTT	57.995	36.000	7.29	0.00	43.06	2.52
3132	4854	7.450074	TGTGTTATGGACTGACACTATCTTTT	58.550	34.615	7.29	0.00	43.06	2.27
3133	4855	7.936847	TGTGTTATGGACTGACACTATCTTTTT	59.063	33.333	7.29	0.00	43.06	1.94
3160	4882	7.631717	TTTTTGGAAAAGGGTAATTGTTTGG	57.368	32.000	0.00	0.00	0.00	3.28
3161	4883	4.965200	TGGAAAAGGGTAATTGTTTGGG	57.035	40.909	0.00	0.00	0.00	4.12
3162	4884	4.557705	TGGAAAAGGGTAATTGTTTGGGA	58.442	39.130	0.00	0.00	0.00	4.37
3163	4885	4.345547	TGGAAAAGGGTAATTGTTTGGGAC	59.654	41.667	0.00	0.00	0.00	4.46
3164	4886	4.345547	GGAAAAGGGTAATTGTTTGGGACA	59.654	41.667	0.00	0.00	36.19	4.02
3280	5002	7.458409	ACATATTCAGCCATTGTTATGATCC	57.542	36.000	0.00	0.00	33.37	3.36
3303	5025	1.214589	CTCTGTGCATGCCAAAGCC	59.785	57.895	16.68	0.00	38.69	4.35
3318	5048	4.437587	GCCATGCCAGCACTCCCT	62.438	66.667	0.00	0.00	0.00	4.20
3433	5163	9.388506	GCTATAAGAATATTATCACAGGCACAT	57.611	33.333	0.00	0.00	0.00	3.21
3436	5166	6.791887	AGAATATTATCACAGGCACATTCG	57.208	37.500	0.00	0.00	0.00	3.34
3437	5167	5.180117	AGAATATTATCACAGGCACATTCGC	59.820	40.000	0.00	0.00	0.00	4.70
3516	5246	4.179599	CTCCCTCCTCCCCTCCCC	62.180	77.778	0.00	0.00	0.00	4.81
3697	5515	1.669999	GCGCCATCTGCCTTTGGATT	61.670	55.000	0.00	0.00	34.81	3.01
3730	5548	3.341629	ATGGAGGGCCTGGTGGTG	61.342	66.667	12.95	0.00	35.27	4.17
3808	5626	0.324738	ATCTCTTCCGCCAGAGGTGA	60.325	55.000	8.73	0.00	40.82	4.02
3836	5654	1.077429	GGCTGGGTGGTTGGATCTC	60.077	63.158	0.00	0.00	0.00	2.75
3934	5762	1.154543	CGTTTTGCGCCGTTACCTC	60.155	57.895	4.18	0.00	0.00	3.85
3942	5770	0.179145	CGCCGTTACCTCGATGAAGT	60.179	55.000	0.00	0.00	0.00	3.01
3945	5773	2.798680	CCGTTACCTCGATGAAGTCAG	58.201	52.381	0.00	0.00	0.00	3.51
4024	5853	1.032794	CTTCCAGATCGGACGATGGA	58.967	55.000	12.40	12.04	46.36	3.41
4117	5946	2.048222	CGGCTTCCTCTTGCACGA	60.048	61.111	0.00	0.00	0.00	4.35
4163	5994	2.603473	TGGCCGACAGGTGCTACT	60.603	61.111	0.00	0.00	40.50	2.57
4178	6009	1.805871	GCTACTCTGAGTCATGCCTGC	60.806	57.143	14.62	5.18	0.00	4.85
4402	6237	4.120331	GCTGCACCGGATGTTGGC	62.120	66.667	9.46	1.99	0.00	4.52
4484	6319	2.604914	CACTCCACATTATCGAGTGTGC	59.395	50.000	17.91	0.00	45.46	4.57
4528	6363	5.163622	GGGTGGATTGATGTATGTTCTTGTG	60.164	44.000	0.00	0.00	0.00	3.33
4810	6668	1.401905	GAAATGTAGGGAAAGGCTGCG	59.598	52.381	0.00	0.00	0.00	5.18
4895	6753	2.003937	GGTTGCCCCAAGTTAGGAAA	57.996	50.000	0.00	0.00	0.00	3.13
4976	7085	4.506758	CATCAATTGGTAGGGCCTTTTTG	58.493	43.478	13.45	9.14	38.35	2.44
5051	7160	7.410800	TGAATGCATCTTGCTTAAGTTTTTG	57.589	32.000	0.00	0.00	45.31	2.44
5112	7222	6.801539	TTTCCAAGATGTATGAGTCAACAC	57.198	37.500	0.00	0.00	0.00	3.32
5156	7266	3.282885	GGAGAAAGCCCATCGAGAAATT	58.717	45.455	0.00	0.00	0.00	1.82
5259	7371	8.533569	AAGTTCTTTGGATCAAAAGGTCTTTA	57.466	30.769	20.27	0.00	37.67	1.85
5282	7394	2.806244	CGTGCAAGGTTTTACTAGCTGT	59.194	45.455	0.00	0.00	0.00	4.40
5288	7400	7.333672	GTGCAAGGTTTTACTAGCTGTACTATT	59.666	37.037	0.00	0.00	0.00	1.73
5599	7711	8.226448	CGATAATGATGAAGCAGGTTATTTCTC	58.774	37.037	0.00	0.00	0.00	2.87
5675	7789	4.735822	GCACACGAGTAGTTAGATGATGAC	59.264	45.833	0.00	0.00	0.00	3.06
5700	7814	8.475639	ACGGCAGAATATCGTATTATATCCTTT	58.524	33.333	0.00	0.00	35.23	3.11
5764	7881	2.270352	TTCTCTGCCGTGTTGGAATT	57.730	45.000	0.00	0.00	42.00	2.17
5802	7919	3.866910	CGGATTCCAATGCATTTTCTTGG	59.133	43.478	9.83	9.55	40.66	3.61
5850	7967	6.846350	ACCAAATTTTTCGATAGCTCTTCTG	58.154	36.000	0.00	0.00	0.00	3.02
6035	8152	1.610624	GGTCGATTTCAAGGTCAGGCA	60.611	52.381	0.00	0.00	0.00	4.75
6246	8363	9.579932	AGACTCCTATTTTCTTCAATTCTTTGT	57.420	29.630	0.00	0.00	34.32	2.83
6337	8493	0.181114	AGAGCTTGCCACAGTCACAA	59.819	50.000	0.00	0.00	0.00	3.33
6421	8577	1.209019	GGCTTGAATGAGCTCTCAGGA	59.791	52.381	16.19	0.00	43.61	3.86
6527	8749	7.279758	GCTATGGAAATATAGGCTCATGACTTC	59.720	40.741	0.00	0.00	32.47	3.01
6552	8774	0.798776	GAGGACAATGGTTGCTGTCG	59.201	55.000	0.00	0.00	42.40	4.35
6636	8859	8.854117	GGAATAGAAGAAAATCAGGCATATTGT	58.146	33.333	0.00	0.00	0.00	2.71
6655	8878	6.575244	ATTGTCCATACAGGGATGTAGAAA	57.425	37.500	0.00	0.00	39.62	2.52
6702	8927	4.712476	CTTCCTGTCCTGGGAAATGATAG	58.288	47.826	0.00	0.00	41.58	2.08
6779	9004	5.988561	GGTCACATGCAAATTTACTGGAAAA	59.011	36.000	0.00	0.00	0.00	2.29
6780	9005	6.650390	GGTCACATGCAAATTTACTGGAAAAT	59.350	34.615	0.00	0.00	0.00	1.82
6796	9054	4.021544	TGGAAAATACCTGATGTTGGCAAC	60.022	41.667	23.12	23.12	0.00	4.17
6817	9075	4.098894	ACAATTTACTCCCTCCGTTCCTA	58.901	43.478	0.00	0.00	0.00	2.94
6851	9109	9.660180	GTCTTTTTAGAGATTTCAGTATGGACT	57.340	33.333	0.00	0.00	36.16	3.85
6957	9215	6.842807	AGGTCTTATATTTAGAAACGGAGGGA	59.157	38.462	0.00	0.00	0.00	4.20
7033	9292	8.739039	TGTACTGAAATGATGATAAAACCTTGG	58.261	33.333	0.00	0.00	0.00	3.61
7155	9419	6.489127	TTGGTTTGGTATAATGAGTTGTCG	57.511	37.500	0.00	0.00	0.00	4.35
7167	9431	3.717707	TGAGTTGTCGGACTCTTCTTTG	58.282	45.455	9.88	0.00	44.99	2.77
7308	9572	4.184629	GACAAGGTATGCTCTCACGAATT	58.815	43.478	0.00	0.00	0.00	2.17
7328	9592	0.247185	CCACCCATTGCGAGCAAAAT	59.753	50.000	14.76	0.00	39.55	1.82
7342	9606	5.332280	GCGAGCAAAATGAACCTGTTTTAAC	60.332	40.000	0.00	0.00	0.00	2.01
7363	9627	4.314961	ACAGCAACTCATCATTGTAACGA	58.685	39.130	0.00	0.00	0.00	3.85
7531	9797	1.065854	CAGAAGTGTTAGGCTGGGGAG	60.066	57.143	0.00	0.00	0.00	4.30
7537	9803	0.393132	GTTAGGCTGGGGAGTTCTGC	60.393	60.000	0.00	0.00	0.00	4.26
7687	9961	2.124560	ACTCCCTCCTCCCCATATTG	57.875	55.000	0.00	0.00	0.00	1.90
7689	9963	1.981495	CTCCCTCCTCCCCATATTGAC	59.019	57.143	0.00	0.00	0.00	3.18
7698	9972	3.769844	CTCCCCATATTGACCGTAGCTAT	59.230	47.826	0.00	0.00	0.00	2.97
7725	9999	4.618920	AAACTTATTCACGTCAGGGAGT	57.381	40.909	0.00	0.00	0.00	3.85
7799	10075	1.202639	TGGAAAAAGTCGCTGAGCTCA	60.203	47.619	17.19	17.19	0.00	4.26
7803	10079	3.386768	AAAAGTCGCTGAGCTCAACTA	57.613	42.857	18.85	2.03	0.00	2.24
7821	10097	0.956410	TATAGCGAGCCGAGCCTCTC	60.956	60.000	0.00	0.00	34.64	3.20
7854	10130	3.426787	TCCACCCACAATGTTTACGAT	57.573	42.857	0.00	0.00	0.00	3.73
7855	10131	3.757270	TCCACCCACAATGTTTACGATT	58.243	40.909	0.00	0.00	0.00	3.34
7856	10132	4.907809	TCCACCCACAATGTTTACGATTA	58.092	39.130	0.00	0.00	0.00	1.75
7857	10133	4.696402	TCCACCCACAATGTTTACGATTAC	59.304	41.667	0.00	0.00	0.00	1.89
7858	10134	4.436317	CCACCCACAATGTTTACGATTACG	60.436	45.833	0.00	0.00	45.75	3.18
7859	10135	4.389382	CACCCACAATGTTTACGATTACGA	59.611	41.667	0.00	0.00	42.66	3.43
7900	10176	8.906867	ACATCATTAGCATTTAACATTAGTGCT	58.093	29.630	14.25	14.25	46.75	4.40
7923	10199	6.237969	GCTAACTTGTCATTTTCTCTCCGATC	60.238	42.308	0.00	0.00	0.00	3.69
7945	10221	5.316167	TCTAGTCAATGCCAAATGTCAACT	58.684	37.500	0.00	0.00	0.00	3.16
7946	10222	6.472016	TCTAGTCAATGCCAAATGTCAACTA	58.528	36.000	0.00	0.00	0.00	2.24
7947	10223	5.376854	AGTCAATGCCAAATGTCAACTAC	57.623	39.130	0.00	0.00	0.00	2.73
7948	10224	5.072741	AGTCAATGCCAAATGTCAACTACT	58.927	37.500	0.00	0.00	0.00	2.57
7949	10225	5.182001	AGTCAATGCCAAATGTCAACTACTC	59.818	40.000	0.00	0.00	0.00	2.59
7950	10226	4.458989	TCAATGCCAAATGTCAACTACTCC	59.541	41.667	0.00	0.00	0.00	3.85
7951	10227	2.790433	TGCCAAATGTCAACTACTCCC	58.210	47.619	0.00	0.00	0.00	4.30
7952	10228	2.375174	TGCCAAATGTCAACTACTCCCT	59.625	45.455	0.00	0.00	0.00	4.20
7953	10229	3.181434	TGCCAAATGTCAACTACTCCCTT	60.181	43.478	0.00	0.00	0.00	3.95
7954	10230	3.440522	GCCAAATGTCAACTACTCCCTTC	59.559	47.826	0.00	0.00	0.00	3.46
7955	10231	4.010349	CCAAATGTCAACTACTCCCTTCC	58.990	47.826	0.00	0.00	0.00	3.46
7956	10232	4.010349	CAAATGTCAACTACTCCCTTCCC	58.990	47.826	0.00	0.00	0.00	3.97
7957	10233	2.409064	TGTCAACTACTCCCTTCCCA	57.591	50.000	0.00	0.00	0.00	4.37
7958	10234	2.257207	TGTCAACTACTCCCTTCCCAG	58.743	52.381	0.00	0.00	0.00	4.45
7959	10235	1.555533	GTCAACTACTCCCTTCCCAGG	59.444	57.143	0.00	0.00	40.45	4.45
7989	10265	4.991776	TGGGACACATCATTGGTAAAAGA	58.008	39.130	0.00	0.00	0.00	2.52
7990	10266	5.389520	TGGGACACATCATTGGTAAAAGAA	58.610	37.500	0.00	0.00	0.00	2.52
7992	10268	6.015519	TGGGACACATCATTGGTAAAAGAAAG	60.016	38.462	0.00	0.00	0.00	2.62
7993	10269	6.208599	GGGACACATCATTGGTAAAAGAAAGA	59.791	38.462	0.00	0.00	0.00	2.52
7994	10270	7.093771	GGGACACATCATTGGTAAAAGAAAGAT	60.094	37.037	0.00	0.00	0.00	2.40
7995	10271	8.956426	GGACACATCATTGGTAAAAGAAAGATA	58.044	33.333	0.00	0.00	0.00	1.98
8023	10565	6.162777	GCTCTCACCTCTACCATCATAATTC	58.837	44.000	0.00	0.00	0.00	2.17
8029	10571	8.004801	TCACCTCTACCATCATAATTCTACTCA	58.995	37.037	0.00	0.00	0.00	3.41
8080	10622	0.729140	CGCTCGGACAAATTTGGCAC	60.729	55.000	25.05	13.40	38.18	5.01
8125	10667	5.361857	CCGGTTCCCAACTTCTCTAATACTA	59.638	44.000	0.00	0.00	0.00	1.82
8126	10668	6.041751	CCGGTTCCCAACTTCTCTAATACTAT	59.958	42.308	0.00	0.00	0.00	2.12
8127	10669	6.924060	CGGTTCCCAACTTCTCTAATACTATG	59.076	42.308	0.00	0.00	0.00	2.23
8128	10670	7.201884	CGGTTCCCAACTTCTCTAATACTATGA	60.202	40.741	0.00	0.00	0.00	2.15
8129	10671	8.652290	GGTTCCCAACTTCTCTAATACTATGAT	58.348	37.037	0.00	0.00	0.00	2.45
8137	10679	9.845214	ACTTCTCTAATACTATGATATTGGGGT	57.155	33.333	0.00	0.00	28.40	4.95
8139	10681	8.079211	TCTCTAATACTATGATATTGGGGTGC	57.921	38.462	0.00	0.00	28.40	5.01
8140	10682	7.678171	TCTCTAATACTATGATATTGGGGTGCA	59.322	37.037	0.00	0.00	28.40	4.57
8141	10683	7.620880	TCTAATACTATGATATTGGGGTGCAC	58.379	38.462	8.80	8.80	0.00	4.57
8142	10684	5.841267	ATACTATGATATTGGGGTGCACA	57.159	39.130	20.43	0.00	0.00	4.57
8143	10685	4.090761	ACTATGATATTGGGGTGCACAG	57.909	45.455	20.43	5.01	0.00	3.66
8144	10686	2.369983	ATGATATTGGGGTGCACAGG	57.630	50.000	20.43	0.00	0.00	4.00
8145	10687	1.294041	TGATATTGGGGTGCACAGGA	58.706	50.000	20.43	1.26	0.00	3.86
8146	10688	1.638070	TGATATTGGGGTGCACAGGAA	59.362	47.619	20.43	7.64	0.00	3.36
8147	10689	2.244510	TGATATTGGGGTGCACAGGAAT	59.755	45.455	20.43	14.28	0.00	3.01
8148	10690	2.435372	TATTGGGGTGCACAGGAATC	57.565	50.000	20.43	0.00	0.00	2.52
8149	10691	0.409092	ATTGGGGTGCACAGGAATCA	59.591	50.000	20.43	4.18	0.00	2.57
8150	10692	0.539438	TTGGGGTGCACAGGAATCAC	60.539	55.000	20.43	0.94	0.00	3.06
8151	10693	1.380302	GGGGTGCACAGGAATCACT	59.620	57.895	20.43	0.00	0.00	3.41
8152	10694	0.678048	GGGGTGCACAGGAATCACTC	60.678	60.000	20.43	0.00	0.00	3.51
8153	10695	0.678048	GGGTGCACAGGAATCACTCC	60.678	60.000	20.43	2.18	45.81	3.85
8163	10705	2.911484	GGAATCACTCCTGTCATGGTC	58.089	52.381	0.00	0.00	41.61	4.02
8164	10706	2.544685	GAATCACTCCTGTCATGGTCG	58.455	52.381	0.00	0.00	0.00	4.79
8165	10707	1.561643	ATCACTCCTGTCATGGTCGT	58.438	50.000	0.00	0.00	0.00	4.34
8166	10708	0.603065	TCACTCCTGTCATGGTCGTG	59.397	55.000	0.00	0.00	33.95	4.35
8167	10709	0.318441	CACTCCTGTCATGGTCGTGT	59.682	55.000	0.00	0.00	0.00	4.49
8168	10710	1.048601	ACTCCTGTCATGGTCGTGTT	58.951	50.000	0.00	0.00	0.00	3.32
8169	10711	2.029380	CACTCCTGTCATGGTCGTGTTA	60.029	50.000	0.00	0.00	0.00	2.41
8170	10712	2.231478	ACTCCTGTCATGGTCGTGTTAG	59.769	50.000	0.00	0.00	0.00	2.34
8171	10713	1.548719	TCCTGTCATGGTCGTGTTAGG	59.451	52.381	0.00	8.23	0.00	2.69
8172	10714	1.275291	CCTGTCATGGTCGTGTTAGGT	59.725	52.381	0.00	0.00	0.00	3.08
8173	10715	2.289444	CCTGTCATGGTCGTGTTAGGTT	60.289	50.000	0.00	0.00	0.00	3.50
8174	10716	3.399330	CTGTCATGGTCGTGTTAGGTTT	58.601	45.455	0.00	0.00	0.00	3.27
8175	10717	3.811083	TGTCATGGTCGTGTTAGGTTTT	58.189	40.909	0.00	0.00	0.00	2.43
8176	10718	3.562141	TGTCATGGTCGTGTTAGGTTTTG	59.438	43.478	0.00	0.00	0.00	2.44
8177	10719	3.058501	GTCATGGTCGTGTTAGGTTTTGG	60.059	47.826	0.00	0.00	0.00	3.28
8178	10720	1.970092	TGGTCGTGTTAGGTTTTGGG	58.030	50.000	0.00	0.00	0.00	4.12
8179	10721	1.212441	TGGTCGTGTTAGGTTTTGGGT	59.788	47.619	0.00	0.00	0.00	4.51
8180	10722	2.437281	TGGTCGTGTTAGGTTTTGGGTA	59.563	45.455	0.00	0.00	0.00	3.69
8181	10723	2.807967	GGTCGTGTTAGGTTTTGGGTAC	59.192	50.000	0.00	0.00	0.00	3.34
8182	10724	3.494924	GGTCGTGTTAGGTTTTGGGTACT	60.495	47.826	0.00	0.00	0.00	2.73
8183	10725	4.129380	GTCGTGTTAGGTTTTGGGTACTT	58.871	43.478	0.00	0.00	0.00	2.24
8184	10726	4.576053	GTCGTGTTAGGTTTTGGGTACTTT	59.424	41.667	0.00	0.00	0.00	2.66
8185	10727	4.815846	TCGTGTTAGGTTTTGGGTACTTTC	59.184	41.667	0.00	0.00	0.00	2.62
8186	10728	4.818005	CGTGTTAGGTTTTGGGTACTTTCT	59.182	41.667	0.00	0.00	0.00	2.52
8187	10729	5.049886	CGTGTTAGGTTTTGGGTACTTTCTC	60.050	44.000	0.00	0.00	0.00	2.87
8188	10730	5.240183	GTGTTAGGTTTTGGGTACTTTCTCC	59.760	44.000	0.00	0.00	0.00	3.71
8189	10731	5.133153	TGTTAGGTTTTGGGTACTTTCTCCT	59.867	40.000	0.00	0.00	0.00	3.69
8190	10732	4.100279	AGGTTTTGGGTACTTTCTCCTG	57.900	45.455	0.00	0.00	0.00	3.86
8191	10733	3.720002	AGGTTTTGGGTACTTTCTCCTGA	59.280	43.478	0.00	0.00	0.00	3.86
8192	10734	3.819337	GGTTTTGGGTACTTTCTCCTGAC	59.181	47.826	0.00	0.00	0.00	3.51
8193	10735	3.782656	TTTGGGTACTTTCTCCTGACC	57.217	47.619	0.00	0.00	0.00	4.02
8195	10737	1.954035	GGGTACTTTCTCCTGACCCT	58.046	55.000	1.00	0.00	45.44	4.34
8196	10738	1.555533	GGGTACTTTCTCCTGACCCTG	59.444	57.143	1.00	0.00	45.44	4.45
8197	10739	1.555533	GGTACTTTCTCCTGACCCTGG	59.444	57.143	0.00	0.00	0.00	4.45
8198	10740	1.066071	GTACTTTCTCCTGACCCTGGC	60.066	57.143	0.00	0.00	0.00	4.85
8199	10741	1.078848	CTTTCTCCTGACCCTGGCG	60.079	63.158	0.00	0.00	0.00	5.69
8200	10742	1.831652	CTTTCTCCTGACCCTGGCGT	61.832	60.000	0.00	0.00	0.00	5.68
8201	10743	1.827399	TTTCTCCTGACCCTGGCGTC	61.827	60.000	7.99	7.99	0.00	5.19
8202	10744	3.775654	CTCCTGACCCTGGCGTCC	61.776	72.222	11.27	0.00	31.35	4.79
8205	10747	3.775654	CTGACCCTGGCGTCCCTC	61.776	72.222	11.27	0.00	31.35	4.30
8206	10748	4.316823	TGACCCTGGCGTCCCTCT	62.317	66.667	11.27	0.00	31.35	3.69
8207	10749	3.462678	GACCCTGGCGTCCCTCTC	61.463	72.222	4.52	0.00	0.00	3.20
8219	10761	3.543537	CCTCTCGGGGAGACATGG	58.456	66.667	6.42	0.00	44.45	3.66
8220	10762	2.136878	CCTCTCGGGGAGACATGGG	61.137	68.421	6.42	0.00	44.45	4.00
8221	10763	2.041922	TCTCGGGGAGACATGGGG	60.042	66.667	0.00	0.00	33.35	4.96
8222	10764	2.041922	CTCGGGGAGACATGGGGA	60.042	66.667	0.00	0.00	0.00	4.81
8223	10765	1.689233	CTCGGGGAGACATGGGGAA	60.689	63.158	0.00	0.00	0.00	3.97
8224	10766	1.229690	TCGGGGAGACATGGGGAAA	60.230	57.895	0.00	0.00	0.00	3.13
8225	10767	1.077716	CGGGGAGACATGGGGAAAC	60.078	63.158	0.00	0.00	0.00	2.78
8269	10811	3.827898	CTCGTCGCTCCCCTCCAC	61.828	72.222	0.00	0.00	0.00	4.02
8272	10814	3.462678	GTCGCTCCCCTCCACCTC	61.463	72.222	0.00	0.00	0.00	3.85
8315	10857	3.365265	CAAAGCCCGGGCAGTGTC	61.365	66.667	45.13	17.31	44.88	3.67
8316	10858	4.660938	AAAGCCCGGGCAGTGTCC	62.661	66.667	45.13	16.49	44.88	4.02
8334	10876	4.459089	GTGGCAGCGGGGACTCTC	62.459	72.222	0.00	0.00	0.00	3.20
8361	10903	4.851252	CCCCCTCCTCCTGGCCAT	62.851	72.222	5.51	0.00	0.00	4.40
8362	10904	3.496160	CCCCTCCTCCTGGCCATG	61.496	72.222	5.51	2.84	0.00	3.66
8363	10905	3.496160	CCCTCCTCCTGGCCATGG	61.496	72.222	5.51	7.63	0.00	3.66
8364	10906	2.693864	CCTCCTCCTGGCCATGGT	60.694	66.667	14.67	0.00	0.00	3.55
8365	10907	2.593978	CTCCTCCTGGCCATGGTG	59.406	66.667	14.67	10.91	0.00	4.17
8366	10908	2.204136	TCCTCCTGGCCATGGTGT	60.204	61.111	14.67	0.00	0.00	4.16
8367	10909	2.044650	CCTCCTGGCCATGGTGTG	60.045	66.667	14.67	3.35	0.00	3.82
8375	10917	4.402851	CCATGGTGTGGGTGTGAG	57.597	61.111	2.57	0.00	44.79	3.51
8376	10918	1.303561	CCATGGTGTGGGTGTGAGG	60.304	63.158	2.57	0.00	44.79	3.86
8377	10919	1.303561	CATGGTGTGGGTGTGAGGG	60.304	63.158	0.00	0.00	0.00	4.30
8378	10920	1.463214	ATGGTGTGGGTGTGAGGGA	60.463	57.895	0.00	0.00	0.00	4.20
8379	10921	1.492133	ATGGTGTGGGTGTGAGGGAG	61.492	60.000	0.00	0.00	0.00	4.30
8380	10922	2.147387	GGTGTGGGTGTGAGGGAGT	61.147	63.158	0.00	0.00	0.00	3.85
8381	10923	1.371558	GTGTGGGTGTGAGGGAGTC	59.628	63.158	0.00	0.00	0.00	3.36
8382	10924	1.122019	GTGTGGGTGTGAGGGAGTCT	61.122	60.000	0.00	0.00	0.00	3.24
8383	10925	0.399949	TGTGGGTGTGAGGGAGTCTT	60.400	55.000	0.00	0.00	0.00	3.01
8384	10926	0.035458	GTGGGTGTGAGGGAGTCTTG	59.965	60.000	0.00	0.00	0.00	3.02
8385	10927	1.127567	TGGGTGTGAGGGAGTCTTGG	61.128	60.000	0.00	0.00	0.00	3.61
8386	10928	0.836400	GGGTGTGAGGGAGTCTTGGA	60.836	60.000	0.00	0.00	0.00	3.53
8387	10929	1.280457	GGTGTGAGGGAGTCTTGGAT	58.720	55.000	0.00	0.00	0.00	3.41
8388	10930	1.630878	GGTGTGAGGGAGTCTTGGATT	59.369	52.381	0.00	0.00	0.00	3.01
8389	10931	2.838202	GGTGTGAGGGAGTCTTGGATTA	59.162	50.000	0.00	0.00	0.00	1.75
8390	10932	3.118592	GGTGTGAGGGAGTCTTGGATTAG	60.119	52.174	0.00	0.00	0.00	1.73
8391	10933	3.107601	TGTGAGGGAGTCTTGGATTAGG	58.892	50.000	0.00	0.00	0.00	2.69
8392	10934	2.436173	GTGAGGGAGTCTTGGATTAGGG	59.564	54.545	0.00	0.00	0.00	3.53
8393	10935	2.050918	GAGGGAGTCTTGGATTAGGGG	58.949	57.143	0.00	0.00	0.00	4.79
8394	10936	1.141185	GGGAGTCTTGGATTAGGGGG	58.859	60.000	0.00	0.00	0.00	5.40
8395	10937	1.628327	GGGAGTCTTGGATTAGGGGGT	60.628	57.143	0.00	0.00	0.00	4.95
8396	10938	1.769465	GGAGTCTTGGATTAGGGGGTC	59.231	57.143	0.00	0.00	0.00	4.46
8397	10939	1.769465	GAGTCTTGGATTAGGGGGTCC	59.231	57.143	0.00	0.00	35.02	4.46
8398	10940	1.369983	AGTCTTGGATTAGGGGGTCCT	59.630	52.381	0.00	0.00	46.96	3.85
8399	10941	1.769465	GTCTTGGATTAGGGGGTCCTC	59.231	57.143	0.00	0.00	43.66	3.71
8400	10942	0.759346	CTTGGATTAGGGGGTCCTCG	59.241	60.000	0.00	0.00	43.66	4.63
8401	10943	0.340558	TTGGATTAGGGGGTCCTCGA	59.659	55.000	0.00	0.00	43.66	4.04
8402	10944	0.340558	TGGATTAGGGGGTCCTCGAA	59.659	55.000	0.00	0.00	43.66	3.71
8403	10945	0.757512	GGATTAGGGGGTCCTCGAAC	59.242	60.000	0.00	0.00	43.66	3.95
8404	10946	1.492764	GATTAGGGGGTCCTCGAACA	58.507	55.000	0.00	0.00	43.66	3.18
8405	10947	1.835531	GATTAGGGGGTCCTCGAACAA	59.164	52.381	0.00	0.00	43.66	2.83
8406	10948	0.978907	TTAGGGGGTCCTCGAACAAC	59.021	55.000	0.00	0.00	43.66	3.32
8407	10949	0.906282	TAGGGGGTCCTCGAACAACC	60.906	60.000	2.64	2.64	43.66	3.77
8408	10950	2.047560	GGGGTCCTCGAACAACCG	60.048	66.667	4.88	0.00	33.69	4.44
8409	10951	2.047560	GGGTCCTCGAACAACCGG	60.048	66.667	0.00	0.00	33.69	5.28
8410	10952	2.576832	GGGTCCTCGAACAACCGGA	61.577	63.158	9.46	0.00	33.69	5.14
8411	10953	1.373873	GGTCCTCGAACAACCGGAC	60.374	63.158	9.46	10.07	44.00	4.79
8412	10954	1.664306	GTCCTCGAACAACCGGACT	59.336	57.895	9.46	0.00	42.02	3.85
8413	10955	0.666577	GTCCTCGAACAACCGGACTG	60.667	60.000	9.46	7.73	42.02	3.51
8414	10956	1.111116	TCCTCGAACAACCGGACTGT	61.111	55.000	9.46	8.50	0.00	3.55
8415	10957	0.599558	CCTCGAACAACCGGACTGTA	59.400	55.000	9.46	0.00	0.00	2.74
8416	10958	1.203994	CCTCGAACAACCGGACTGTAT	59.796	52.381	9.46	2.35	0.00	2.29
8417	10959	2.424601	CCTCGAACAACCGGACTGTATA	59.575	50.000	9.46	0.00	0.00	1.47
8418	10960	3.432782	CTCGAACAACCGGACTGTATAC	58.567	50.000	9.46	0.00	0.00	1.47
8419	10961	2.159531	TCGAACAACCGGACTGTATACG	60.160	50.000	9.46	16.30	0.00	3.06
8420	10962	2.414559	CGAACAACCGGACTGTATACGT	60.415	50.000	9.46	0.00	0.00	3.57
8421	10963	3.181511	CGAACAACCGGACTGTATACGTA	60.182	47.826	9.46	0.00	0.00	3.57
8422	10964	4.496341	CGAACAACCGGACTGTATACGTAT	60.496	45.833	9.46	13.54	0.00	3.06
8423	10965	4.297299	ACAACCGGACTGTATACGTATG	57.703	45.455	18.37	4.12	0.00	2.39
8424	10966	3.047796	CAACCGGACTGTATACGTATGC	58.952	50.000	18.37	17.03	0.00	3.14
8425	10967	1.610522	ACCGGACTGTATACGTATGCC	59.389	52.381	18.37	8.96	0.00	4.40
8426	10968	1.400629	CCGGACTGTATACGTATGCCG	60.401	57.143	18.37	19.07	44.03	5.69
8427	10969	1.400629	CGGACTGTATACGTATGCCGG	60.401	57.143	18.37	14.63	42.24	6.13
8428	10970	1.881973	GGACTGTATACGTATGCCGGA	59.118	52.381	18.37	0.35	42.24	5.14
8429	10971	2.351157	GGACTGTATACGTATGCCGGAC	60.351	54.545	18.37	12.47	42.24	4.79
8430	10972	2.551459	GACTGTATACGTATGCCGGACT	59.449	50.000	18.37	0.00	42.24	3.85
8431	10973	2.292569	ACTGTATACGTATGCCGGACTG	59.707	50.000	18.37	13.10	42.24	3.51
8432	10974	2.292569	CTGTATACGTATGCCGGACTGT	59.707	50.000	18.37	0.00	42.24	3.55
8433	10975	2.689471	TGTATACGTATGCCGGACTGTT	59.311	45.455	18.37	0.00	42.24	3.16
8434	10976	2.218953	ATACGTATGCCGGACTGTTG	57.781	50.000	5.05	0.00	42.24	3.33
8435	10977	0.173935	TACGTATGCCGGACTGTTGG	59.826	55.000	5.05	0.00	42.24	3.77
8436	10978	1.813753	CGTATGCCGGACTGTTGGG	60.814	63.158	5.05	0.00	0.00	4.12
8438	10980	2.297895	TATGCCGGACTGTTGGGCT	61.298	57.895	19.40	10.52	46.97	5.19
8439	10981	0.978667	TATGCCGGACTGTTGGGCTA	60.979	55.000	19.40	9.75	46.97	3.93
8440	10982	1.635817	ATGCCGGACTGTTGGGCTAT	61.636	55.000	19.40	11.13	46.97	2.97
8441	10983	1.819632	GCCGGACTGTTGGGCTATG	60.820	63.158	5.05	0.00	43.52	2.23
8442	10984	1.904771	CCGGACTGTTGGGCTATGA	59.095	57.895	0.00	0.00	0.00	2.15
8443	10985	0.251916	CCGGACTGTTGGGCTATGAA	59.748	55.000	0.00	0.00	0.00	2.57
8444	10986	1.656652	CGGACTGTTGGGCTATGAAG	58.343	55.000	0.00	0.00	0.00	3.02
8445	10987	1.207089	CGGACTGTTGGGCTATGAAGA	59.793	52.381	0.00	0.00	0.00	2.87
8446	10988	2.158900	CGGACTGTTGGGCTATGAAGAT	60.159	50.000	0.00	0.00	0.00	2.40
8447	10989	3.069586	CGGACTGTTGGGCTATGAAGATA	59.930	47.826	0.00	0.00	0.00	1.98
8448	10990	4.381411	GGACTGTTGGGCTATGAAGATAC	58.619	47.826	0.00	0.00	0.00	2.24
8449	10991	4.141711	GGACTGTTGGGCTATGAAGATACA	60.142	45.833	0.00	0.00	0.00	2.29
8450	10992	5.428253	GACTGTTGGGCTATGAAGATACAA	58.572	41.667	0.00	0.00	0.00	2.41
8451	10993	5.431765	ACTGTTGGGCTATGAAGATACAAG	58.568	41.667	0.00	0.00	0.00	3.16
8452	10994	5.189736	ACTGTTGGGCTATGAAGATACAAGA	59.810	40.000	0.00	0.00	0.00	3.02
8453	10995	6.126652	ACTGTTGGGCTATGAAGATACAAGAT	60.127	38.462	0.00	0.00	0.00	2.40
8454	10996	7.071196	ACTGTTGGGCTATGAAGATACAAGATA	59.929	37.037	0.00	0.00	0.00	1.98
8455	10997	7.445121	TGTTGGGCTATGAAGATACAAGATAG	58.555	38.462	0.00	0.00	0.00	2.08
8456	10998	7.290014	TGTTGGGCTATGAAGATACAAGATAGA	59.710	37.037	0.00	0.00	0.00	1.98
8457	10999	7.855784	TGGGCTATGAAGATACAAGATAGAA	57.144	36.000	0.00	0.00	0.00	2.10
8458	11000	7.901029	TGGGCTATGAAGATACAAGATAGAAG	58.099	38.462	0.00	0.00	0.00	2.85
8459	11001	7.730332	TGGGCTATGAAGATACAAGATAGAAGA	59.270	37.037	0.00	0.00	0.00	2.87
8460	11002	8.032451	GGGCTATGAAGATACAAGATAGAAGAC	58.968	40.741	0.00	0.00	0.00	3.01
8461	11003	8.802267	GGCTATGAAGATACAAGATAGAAGACT	58.198	37.037	0.00	0.00	0.00	3.24
8465	11007	8.282455	TGAAGATACAAGATAGAAGACTTCGT	57.718	34.615	9.53	2.90	35.49	3.85
8466	11008	8.399425	TGAAGATACAAGATAGAAGACTTCGTC	58.601	37.037	9.53	11.49	35.49	4.20
8467	11009	7.266922	AGATACAAGATAGAAGACTTCGTCC	57.733	40.000	9.53	3.13	32.18	4.79
8468	11010	4.722361	ACAAGATAGAAGACTTCGTCCC	57.278	45.455	9.53	1.49	32.18	4.46
8469	11011	3.128938	ACAAGATAGAAGACTTCGTCCCG	59.871	47.826	9.53	8.35	32.18	5.14
8470	11012	3.002038	AGATAGAAGACTTCGTCCCGT	57.998	47.619	9.53	0.00	32.18	5.28
8471	11013	2.683867	AGATAGAAGACTTCGTCCCGTG	59.316	50.000	9.53	0.00	32.18	4.94
8472	11014	1.901591	TAGAAGACTTCGTCCCGTGT	58.098	50.000	9.53	0.00	32.18	4.49
8473	11015	0.597072	AGAAGACTTCGTCCCGTGTC	59.403	55.000	9.53	0.00	32.18	3.67
8474	11016	0.388263	GAAGACTTCGTCCCGTGTCC	60.388	60.000	0.00	0.00	34.39	4.02
8475	11017	2.126580	GACTTCGTCCCGTGTCCG	60.127	66.667	0.00	0.00	0.00	4.79
8490	11032	3.711849	TCCGGATGGGACTCTTCTT	57.288	52.632	0.00	0.00	40.94	2.52
8491	11033	1.952621	TCCGGATGGGACTCTTCTTT	58.047	50.000	0.00	0.00	40.94	2.52
8492	11034	1.555075	TCCGGATGGGACTCTTCTTTG	59.445	52.381	0.00	0.00	40.94	2.77
8493	11035	1.279271	CCGGATGGGACTCTTCTTTGT	59.721	52.381	0.00	0.00	38.47	2.83
8494	11036	2.350522	CGGATGGGACTCTTCTTTGTG	58.649	52.381	0.00	0.00	0.00	3.33
8495	11037	2.289694	CGGATGGGACTCTTCTTTGTGT	60.290	50.000	0.00	0.00	0.00	3.72
8496	11038	3.077359	GGATGGGACTCTTCTTTGTGTG	58.923	50.000	0.00	0.00	0.00	3.82
8497	11039	2.638480	TGGGACTCTTCTTTGTGTGG	57.362	50.000	0.00	0.00	0.00	4.17
8498	11040	2.123589	TGGGACTCTTCTTTGTGTGGA	58.876	47.619	0.00	0.00	0.00	4.02
8499	11041	2.507886	TGGGACTCTTCTTTGTGTGGAA	59.492	45.455	0.00	0.00	0.00	3.53
8500	11042	3.142174	GGGACTCTTCTTTGTGTGGAAG	58.858	50.000	0.00	0.00	39.94	3.46
8501	11043	3.142174	GGACTCTTCTTTGTGTGGAAGG	58.858	50.000	0.00	0.00	39.30	3.46
8502	11044	2.550180	GACTCTTCTTTGTGTGGAAGGC	59.450	50.000	0.00	0.00	39.30	4.35
8503	11045	2.092429	ACTCTTCTTTGTGTGGAAGGCA	60.092	45.455	0.00	0.00	39.30	4.75
8504	11046	2.951642	CTCTTCTTTGTGTGGAAGGCAA	59.048	45.455	0.00	0.00	39.30	4.52
8505	11047	2.951642	TCTTCTTTGTGTGGAAGGCAAG	59.048	45.455	0.00	0.00	39.30	4.01
8506	11048	1.032014	TCTTTGTGTGGAAGGCAAGC	58.968	50.000	0.00	0.00	0.00	4.01
8507	11049	1.035139	CTTTGTGTGGAAGGCAAGCT	58.965	50.000	0.00	0.00	0.00	3.74
8508	11050	1.410153	CTTTGTGTGGAAGGCAAGCTT	59.590	47.619	0.00	0.00	0.00	3.74
8509	11051	0.746063	TTGTGTGGAAGGCAAGCTTG	59.254	50.000	22.44	22.44	0.00	4.01
8510	11052	1.108727	TGTGTGGAAGGCAAGCTTGG	61.109	55.000	27.10	9.80	0.00	3.61
8517	11059	2.100991	GGCAAGCTTGGCGATTCG	59.899	61.111	33.68	4.49	43.97	3.34
8518	11060	2.100991	GCAAGCTTGGCGATTCGG	59.899	61.111	27.10	0.00	0.00	4.30
8519	11061	2.398554	GCAAGCTTGGCGATTCGGA	61.399	57.895	27.10	0.00	0.00	4.55
8520	11062	1.718757	GCAAGCTTGGCGATTCGGAT	61.719	55.000	27.10	0.00	0.00	4.18
8521	11063	1.581934	CAAGCTTGGCGATTCGGATA	58.418	50.000	19.14	0.00	0.00	2.59
8522	11064	1.261619	CAAGCTTGGCGATTCGGATAC	59.738	52.381	19.14	0.00	0.00	2.24
8540	11082	6.986904	GGATACGAAGATTCCTTTTTCTGT	57.013	37.500	0.00	0.00	31.62	3.41
8542	11084	8.488651	GGATACGAAGATTCCTTTTTCTGTAA	57.511	34.615	0.00	0.00	31.62	2.41
8543	11085	8.388853	GGATACGAAGATTCCTTTTTCTGTAAC	58.611	37.037	0.00	0.00	31.62	2.50
8544	11086	6.555812	ACGAAGATTCCTTTTTCTGTAACC	57.444	37.500	0.00	0.00	31.62	2.85
8545	11087	5.178809	ACGAAGATTCCTTTTTCTGTAACCG	59.821	40.000	0.00	0.00	31.62	4.44
8546	11088	5.407387	CGAAGATTCCTTTTTCTGTAACCGA	59.593	40.000	0.00	0.00	31.62	4.69
8547	11089	6.555812	AAGATTCCTTTTTCTGTAACCGAC	57.444	37.500	0.00	0.00	0.00	4.79
8548	11090	5.866207	AGATTCCTTTTTCTGTAACCGACT	58.134	37.500	0.00	0.00	0.00	4.18
8549	11091	6.296803	AGATTCCTTTTTCTGTAACCGACTT	58.703	36.000	0.00	0.00	0.00	3.01
8550	11092	6.771267	AGATTCCTTTTTCTGTAACCGACTTT	59.229	34.615	0.00	0.00	0.00	2.66
8551	11093	5.744666	TCCTTTTTCTGTAACCGACTTTG	57.255	39.130	0.00	0.00	0.00	2.77
8552	11094	5.187687	TCCTTTTTCTGTAACCGACTTTGT	58.812	37.500	0.00	0.00	0.00	2.83
8553	11095	5.065474	TCCTTTTTCTGTAACCGACTTTGTG	59.935	40.000	0.00	0.00	0.00	3.33
8554	11096	5.163693	CCTTTTTCTGTAACCGACTTTGTGT	60.164	40.000	0.00	0.00	0.00	3.72
8555	11097	6.037391	CCTTTTTCTGTAACCGACTTTGTGTA	59.963	38.462	0.00	0.00	0.00	2.90
8556	11098	6.981762	TTTTCTGTAACCGACTTTGTGTAA	57.018	33.333	0.00	0.00	0.00	2.41
8557	11099	5.971895	TTCTGTAACCGACTTTGTGTAAC	57.028	39.130	0.00	0.00	37.35	2.50
8558	11100	4.370917	TCTGTAACCGACTTTGTGTAACC	58.629	43.478	0.00	0.00	34.36	2.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
6	7	0.737367	CTCCGAAGCTCGTCATTGCA	60.737	55.000	0.00	0.00	38.40	4.08
13	14	4.421479	CACGCCTCCGAAGCTCGT	62.421	66.667	0.00	0.00	38.40	4.18
29	30	2.125552	CTCATCCACGCCTTCGCA	60.126	61.111	0.00	0.00	39.84	5.10
63	64	0.373716	GTAGGAATGCTTCAACGCGG	59.626	55.000	12.47	0.00	0.00	6.46
64	65	0.373716	GGTAGGAATGCTTCAACGCG	59.626	55.000	3.53	3.53	0.00	6.01
65	66	1.130561	GTGGTAGGAATGCTTCAACGC	59.869	52.381	0.00	0.00	0.00	4.84
66	67	2.159627	GTGTGGTAGGAATGCTTCAACG	59.840	50.000	0.00	0.00	0.00	4.10
67	68	2.488153	GGTGTGGTAGGAATGCTTCAAC	59.512	50.000	0.00	0.00	0.00	3.18
68	69	2.107378	TGGTGTGGTAGGAATGCTTCAA	59.893	45.455	0.00	0.00	0.00	2.69
69	70	1.702401	TGGTGTGGTAGGAATGCTTCA	59.298	47.619	0.00	0.00	0.00	3.02
78	79	1.234615	CCGTTGCTTGGTGTGGTAGG	61.235	60.000	0.00	0.00	0.00	3.18
96	97	5.915175	ACTCGTCCAACTTTATCTATTCCC	58.085	41.667	0.00	0.00	0.00	3.97
98	99	6.697892	CCTGACTCGTCCAACTTTATCTATTC	59.302	42.308	0.00	0.00	0.00	1.75
116	117	2.510800	AGGACTAGACTACCCCTGACTC	59.489	54.545	0.00	0.00	0.00	3.36
119	120	3.335786	TGAAAGGACTAGACTACCCCTGA	59.664	47.826	0.00	0.00	0.00	3.86
172	175	5.796502	TGTCATTTCCTTCCCCTTATTCT	57.203	39.130	0.00	0.00	0.00	2.40
173	176	5.302823	CCATGTCATTTCCTTCCCCTTATTC	59.697	44.000	0.00	0.00	0.00	1.75
174	177	5.211201	CCATGTCATTTCCTTCCCCTTATT	58.789	41.667	0.00	0.00	0.00	1.40
176	179	3.596046	ACCATGTCATTTCCTTCCCCTTA	59.404	43.478	0.00	0.00	0.00	2.69
177	180	2.383338	ACCATGTCATTTCCTTCCCCTT	59.617	45.455	0.00	0.00	0.00	3.95
179	182	2.532250	ACCATGTCATTTCCTTCCCC	57.468	50.000	0.00	0.00	0.00	4.81
180	183	4.080299	AGAGTACCATGTCATTTCCTTCCC	60.080	45.833	0.00	0.00	0.00	3.97
181	184	5.104259	AGAGTACCATGTCATTTCCTTCC	57.896	43.478	0.00	0.00	0.00	3.46
183	186	6.405953	CGAGTAGAGTACCATGTCATTTCCTT	60.406	42.308	0.00	0.00	0.00	3.36
192	196	3.676324	GCTTTGCGAGTAGAGTACCATGT	60.676	47.826	0.00	0.00	0.00	3.21
197	201	1.203994	TGGGCTTTGCGAGTAGAGTAC	59.796	52.381	0.00	0.00	0.00	2.73
215	219	4.445385	GCAAAAATGCCGCTCTTAATATGG	59.555	41.667	0.00	0.00	0.00	2.74
239	415	1.869342	GCACTTTGAACATGCGGCTTT	60.869	47.619	0.00	0.00	0.00	3.51
254	430	3.119137	GGGAAAATCGGCTATTTGCACTT	60.119	43.478	4.98	0.00	45.15	3.16
275	452	0.108585	ACGGCTACATTGGGCATAGG	59.891	55.000	6.30	0.00	0.00	2.57
277	454	0.249699	CGACGGCTACATTGGGCATA	60.250	55.000	0.00	0.00	0.00	3.14
314	491	2.894240	TAGTGATTTCGGCCGCGGTC	62.894	60.000	28.70	25.84	0.00	4.79
315	492	2.306255	ATAGTGATTTCGGCCGCGGT	62.306	55.000	28.70	8.16	0.00	5.68
462	639	3.243401	GCGTTTCTTTGTTGGATGGAAGT	60.243	43.478	0.00	0.00	0.00	3.01
467	644	1.265635	TCGGCGTTTCTTTGTTGGATG	59.734	47.619	6.85	0.00	0.00	3.51
645	822	0.102300	GTGTCTTGCCTTGGCGTTTT	59.898	50.000	7.18	0.00	0.00	2.43
657	834	4.440250	CCCTGATTACCGAGTAGTGTCTTG	60.440	50.000	0.00	0.00	0.00	3.02
662	839	1.068741	GGCCCTGATTACCGAGTAGTG	59.931	57.143	0.00	0.00	0.00	2.74
807	984	0.393267	TACCCAACATAGCAACGCCC	60.393	55.000	0.00	0.00	0.00	6.13
902	1079	5.452078	TTATGACCCTTTCAGCAAACTTG	57.548	39.130	0.00	0.00	37.77	3.16
960	1137	4.803426	CAGGCACGGTCCGAGAGC	62.803	72.222	20.51	17.77	0.00	4.09
961	1138	4.803426	GCAGGCACGGTCCGAGAG	62.803	72.222	20.51	8.50	0.00	3.20
963	1140	4.379243	AAGCAGGCACGGTCCGAG	62.379	66.667	20.51	12.00	0.00	4.63
964	1141	4.373116	GAAGCAGGCACGGTCCGA	62.373	66.667	20.51	0.00	0.00	4.55
978	1155	1.318886	TGAGCTGAGGAGGAGCGAAG	61.319	60.000	0.00	0.00	41.61	3.79
979	1156	1.304464	TGAGCTGAGGAGGAGCGAA	60.304	57.895	0.00	0.00	41.61	4.70
980	1157	1.752310	CTGAGCTGAGGAGGAGCGA	60.752	63.158	0.00	0.00	41.61	4.93
1256	1442	2.124819	AGCCAGGAAGCAGCGATG	60.125	61.111	0.00	0.00	34.23	3.84
1307	1494	1.160137	AGCAAGAAGACGGCAATCAC	58.840	50.000	0.00	0.00	0.00	3.06
1377	1564	2.586648	AAAGGAACGAGGCCAAATCT	57.413	45.000	5.01	0.00	0.00	2.40
1497	1689	5.163301	GGAGTTGATGTACATGTAGATGGGT	60.163	44.000	19.40	2.43	33.39	4.51
1600	1792	3.983044	TCAAGGCTAGAAGGAGGTTTC	57.017	47.619	0.00	0.00	0.00	2.78
1736	1930	2.812591	GCATGCTACCTGAATCATCCAG	59.187	50.000	11.37	0.00	0.00	3.86
1847	2041	6.289064	AGAGAACTTAACAAACTGTAGGTGG	58.711	40.000	0.00	0.00	0.00	4.61
2042	2236	3.118519	GGGAAGAACGTAGGCAGGAATTA	60.119	47.826	0.00	0.00	0.00	1.40
2104	2298	6.413818	CAGACGAAAACCACAACACTTATTTC	59.586	38.462	0.00	0.00	0.00	2.17
2115	2309	5.871539	GTTTTAGTTCAGACGAAAACCACA	58.128	37.500	13.48	0.00	46.60	4.17
2139	2333	5.125900	TCTCCGATCCAAAATAAGTGTCGTA	59.874	40.000	0.00	0.00	0.00	3.43
2141	2335	4.430007	TCTCCGATCCAAAATAAGTGTCG	58.570	43.478	0.00	0.00	0.00	4.35
2253	3769	1.424638	ACATTATGGGACGGAGGGAG	58.575	55.000	0.00	0.00	0.00	4.30
2254	3770	2.779429	TACATTATGGGACGGAGGGA	57.221	50.000	0.00	0.00	0.00	4.20
2255	3771	2.969950	TCTTACATTATGGGACGGAGGG	59.030	50.000	0.00	0.00	0.00	4.30
2256	3772	3.552273	CGTCTTACATTATGGGACGGAGG	60.552	52.174	20.50	5.87	43.69	4.30
2257	3773	3.639538	CGTCTTACATTATGGGACGGAG	58.360	50.000	20.50	2.74	43.69	4.63
2258	3774	3.720949	CGTCTTACATTATGGGACGGA	57.279	47.619	20.50	2.30	43.69	4.69
2303	3819	5.122711	CCGTCCCATAATGTAAGACGTTTTT	59.877	40.000	9.63	0.00	46.62	1.94
2304	3820	4.632688	CCGTCCCATAATGTAAGACGTTTT	59.367	41.667	9.63	0.00	46.62	2.43
2305	3821	4.081531	TCCGTCCCATAATGTAAGACGTTT	60.082	41.667	9.63	0.00	46.62	3.60
2306	3822	3.448301	TCCGTCCCATAATGTAAGACGTT	59.552	43.478	9.63	0.00	46.62	3.99
2307	3823	3.025978	TCCGTCCCATAATGTAAGACGT	58.974	45.455	9.63	0.00	46.62	4.34
2309	3825	3.244112	CCCTCCGTCCCATAATGTAAGAC	60.244	52.174	0.00	0.00	0.00	3.01
2310	3826	2.969950	CCCTCCGTCCCATAATGTAAGA	59.030	50.000	0.00	0.00	0.00	2.10
2311	3827	2.969950	TCCCTCCGTCCCATAATGTAAG	59.030	50.000	0.00	0.00	0.00	2.34
2312	3828	2.969950	CTCCCTCCGTCCCATAATGTAA	59.030	50.000	0.00	0.00	0.00	2.41
2313	3829	2.605257	CTCCCTCCGTCCCATAATGTA	58.395	52.381	0.00	0.00	0.00	2.29
2314	3830	1.424638	CTCCCTCCGTCCCATAATGT	58.575	55.000	0.00	0.00	0.00	2.71
2315	3831	0.035458	GCTCCCTCCGTCCCATAATG	59.965	60.000	0.00	0.00	0.00	1.90
2316	3832	0.104934	AGCTCCCTCCGTCCCATAAT	60.105	55.000	0.00	0.00	0.00	1.28
2317	3833	1.048724	CAGCTCCCTCCGTCCCATAA	61.049	60.000	0.00	0.00	0.00	1.90
2318	3834	1.457643	CAGCTCCCTCCGTCCCATA	60.458	63.158	0.00	0.00	0.00	2.74
2319	3835	2.765807	CAGCTCCCTCCGTCCCAT	60.766	66.667	0.00	0.00	0.00	4.00
2322	3838	2.442272	TAGCAGCTCCCTCCGTCC	60.442	66.667	0.00	0.00	0.00	4.79
2323	3839	2.494530	CCTAGCAGCTCCCTCCGTC	61.495	68.421	0.00	0.00	0.00	4.79
2324	3840	2.443016	CCTAGCAGCTCCCTCCGT	60.443	66.667	0.00	0.00	0.00	4.69
2325	3841	2.443016	ACCTAGCAGCTCCCTCCG	60.443	66.667	0.00	0.00	0.00	4.63
2326	3842	0.689412	AAGACCTAGCAGCTCCCTCC	60.689	60.000	0.00	0.00	0.00	4.30
2327	3843	1.138069	GAAAGACCTAGCAGCTCCCTC	59.862	57.143	0.00	0.00	0.00	4.30
2328	3844	1.199615	GAAAGACCTAGCAGCTCCCT	58.800	55.000	0.00	0.00	0.00	4.20
2329	3845	1.199615	AGAAAGACCTAGCAGCTCCC	58.800	55.000	0.00	0.00	0.00	4.30
2330	3846	2.234908	TGAAGAAAGACCTAGCAGCTCC	59.765	50.000	0.00	0.00	0.00	4.70
2331	3847	3.601443	TGAAGAAAGACCTAGCAGCTC	57.399	47.619	0.00	0.00	0.00	4.09
2332	3848	5.365025	TCATATGAAGAAAGACCTAGCAGCT	59.635	40.000	1.98	0.00	0.00	4.24
2341	3857	8.746922	TTTGCACATTTCATATGAAGAAAGAC	57.253	30.769	17.28	8.40	38.27	3.01
2472	3988	9.302345	ACAGTAAGTTCATATTTGTGACTATCG	57.698	33.333	0.00	0.00	0.00	2.92
2508	4024	4.072131	AGGCAAAATCGCTCTAAACTTCA	58.928	39.130	0.00	0.00	0.00	3.02
2514	4030	2.094752	GGCAAAGGCAAAATCGCTCTAA	60.095	45.455	0.00	0.00	43.71	2.10
2521	4037	6.108015	TGATTATGAAGGCAAAGGCAAAATC	58.892	36.000	0.00	0.00	43.71	2.17
2576	4092	8.913487	TCACATCTGATATCATTTATTGCACT	57.087	30.769	5.72	0.00	0.00	4.40
2616	4132	9.092876	GTTGTTTGATGAAGGTTTGAATACAAA	57.907	29.630	0.00	0.00	42.66	2.83
2726	4245	8.896744	CAAAATGCTCCTCATGAATAGTAAAGA	58.103	33.333	0.00	0.00	35.13	2.52
2742	4263	6.569179	TTTAACACTCCTACAAAATGCTCC	57.431	37.500	0.00	0.00	0.00	4.70
2745	4266	9.341899	CTATGTTTTAACACTCCTACAAAATGC	57.658	33.333	0.00	0.00	42.51	3.56
2822	4343	4.613437	ACATGGGCAGAAATATGGAAGTT	58.387	39.130	0.00	0.00	0.00	2.66
2916	4638	0.036294	GCACACTAGGGGTCAAGGTC	60.036	60.000	0.00	0.00	0.00	3.85
3059	4781	5.716228	TGGGTGCAATTGATGAGTTAGAAAT	59.284	36.000	10.34	0.00	0.00	2.17
3088	4810	4.141620	ACACAGTTCAAGTTGATCAGAGGT	60.142	41.667	14.76	8.75	0.00	3.85
3136	4858	6.603599	CCCAAACAATTACCCTTTTCCAAAAA	59.396	34.615	0.00	0.00	0.00	1.94
3137	4859	6.069615	TCCCAAACAATTACCCTTTTCCAAAA	60.070	34.615	0.00	0.00	0.00	2.44
3138	4860	5.428783	TCCCAAACAATTACCCTTTTCCAAA	59.571	36.000	0.00	0.00	0.00	3.28
3139	4861	4.969359	TCCCAAACAATTACCCTTTTCCAA	59.031	37.500	0.00	0.00	0.00	3.53
3140	4862	4.345547	GTCCCAAACAATTACCCTTTTCCA	59.654	41.667	0.00	0.00	0.00	3.53
3141	4863	4.345547	TGTCCCAAACAATTACCCTTTTCC	59.654	41.667	0.00	0.00	34.03	3.13
3142	4864	5.538849	TGTCCCAAACAATTACCCTTTTC	57.461	39.130	0.00	0.00	34.03	2.29
3143	4865	5.959583	TTGTCCCAAACAATTACCCTTTT	57.040	34.783	0.00	0.00	42.95	2.27
3144	4866	5.959583	TTTGTCCCAAACAATTACCCTTT	57.040	34.783	0.00	0.00	46.94	3.11
3145	4867	6.785466	AGTATTTGTCCCAAACAATTACCCTT	59.215	34.615	14.51	1.20	46.38	3.95
3146	4868	6.319715	AGTATTTGTCCCAAACAATTACCCT	58.680	36.000	14.51	1.69	46.38	4.34
3147	4869	6.599356	AGTATTTGTCCCAAACAATTACCC	57.401	37.500	14.51	0.00	46.38	3.69
3148	4870	9.185680	AGATAGTATTTGTCCCAAACAATTACC	57.814	33.333	14.51	5.29	46.38	2.85
3177	4899	7.918076	AGAAGTGACCTAGTATTTGATCCAAA	58.082	34.615	0.00	0.00	37.75	3.28
3183	4905	5.338632	TGGGAGAAGTGACCTAGTATTTGA	58.661	41.667	0.00	0.00	0.00	2.69
3303	5025	2.707849	GCAAGGGAGTGCTGGCATG	61.708	63.158	0.00	0.00	41.51	4.06
3403	5133	7.222999	GCCTGTGATAATATTCTTATAGCCGTC	59.777	40.741	0.00	0.00	0.00	4.79
3405	5135	7.010552	GTGCCTGTGATAATATTCTTATAGCCG	59.989	40.741	0.00	0.00	0.00	5.52
3433	5163	4.157120	GCGGGAGGCTAAGGCGAA	62.157	66.667	0.00	0.00	39.81	4.70
3713	5531	3.341629	CACCACCAGGCCCTCCAT	61.342	66.667	0.00	0.00	39.06	3.41
3836	5654	2.030717	CGGGACTAGATGACGAATCTGG	60.031	54.545	13.37	12.81	45.64	3.86
3915	5738	1.834458	GAGGTAACGGCGCAAAACGT	61.834	55.000	10.83	6.68	46.48	3.99
3934	5762	1.139989	ACACAACGCTGACTTCATCG	58.860	50.000	1.09	1.09	40.80	3.84
3942	5770	2.605818	GACAACAGTTACACAACGCTGA	59.394	45.455	0.00	0.00	39.78	4.26
3945	5773	1.589320	TCGACAACAGTTACACAACGC	59.411	47.619	0.00	0.00	39.78	4.84
4024	5853	2.167900	GAGAAACGGCACCATAGTACCT	59.832	50.000	0.00	0.00	0.00	3.08
4085	5914	3.775654	CCGCTCCACCTCCTGTCC	61.776	72.222	0.00	0.00	0.00	4.02
4163	5994	0.035725	CCAAGCAGGCATGACTCAGA	60.036	55.000	0.00	0.00	0.00	3.27
4402	6237	2.611971	CCATCCACATAACGTATCGGGG	60.612	54.545	0.00	0.00	0.00	5.73
4484	6319	0.886490	GAAGCCACCACTCACACCTG	60.886	60.000	0.00	0.00	0.00	4.00
4895	6753	3.137446	AGAGAGCATGCAGTCAAACTT	57.863	42.857	21.98	0.00	0.00	2.66
4976	7085	5.773575	TGCGTCTATGGAATTCTACAGATC	58.226	41.667	2.91	0.19	0.00	2.75
5051	7160	0.388520	GCAAGATGCCCGGTCAAAAC	60.389	55.000	0.00	0.00	37.42	2.43
5097	7207	8.181904	AGGAAAATTTGTGTTGACTCATACAT	57.818	30.769	0.00	0.00	0.00	2.29
5222	7333	9.312904	TGATCCAAAGAACTTCCATAGAAATTT	57.687	29.630	0.00	0.00	0.00	1.82
5224	7335	8.884124	TTGATCCAAAGAACTTCCATAGAAAT	57.116	30.769	0.00	0.00	0.00	2.17
5233	7344	6.641169	AGACCTTTTGATCCAAAGAACTTC	57.359	37.500	18.39	10.03	34.72	3.01
5236	7347	6.863645	GCTAAAGACCTTTTGATCCAAAGAAC	59.136	38.462	18.39	12.08	34.72	3.01
5259	7371	1.804748	GCTAGTAAAACCTTGCACGCT	59.195	47.619	0.00	0.00	34.05	5.07
5675	7789	8.873215	AAAGGATATAATACGATATTCTGCCG	57.127	34.615	0.00	0.00	29.45	5.69
5764	7881	1.224315	CCGATGAAGGGGCATGTGA	59.776	57.895	0.00	0.00	0.00	3.58
5802	7919	0.800012	CATGCTTTGGCCAACATTGC	59.200	50.000	20.35	19.52	37.74	3.56
5872	7989	1.276138	GCCCAAGCAAACTAAGCCAAT	59.724	47.619	0.00	0.00	39.53	3.16
5980	8097	5.046014	ACATTGCAGGTCAGAAGAGTAAGAT	60.046	40.000	0.00	0.00	0.00	2.40
6035	8152	4.456280	TCTCGCTATGTCAACATCTGTT	57.544	40.909	0.00	0.00	37.76	3.16
6053	8170	8.029642	TCTTCACATTTCGTATTTCCTTTCTC	57.970	34.615	0.00	0.00	0.00	2.87
6320	8437	0.394216	TGTTGTGACTGTGGCAAGCT	60.394	50.000	0.00	0.00	0.00	3.74
6337	8493	6.668283	AGGGAACTAGTGTATACTTCATGTGT	59.332	38.462	4.17	0.00	40.61	3.72
6527	8749	0.392998	CAACCATTGTCCTCTCCCCG	60.393	60.000	0.00	0.00	0.00	5.73
6609	8832	9.075678	CAATATGCCTGATTTTCTTCTATTCCT	57.924	33.333	0.00	0.00	0.00	3.36
6611	8834	9.890352	GACAATATGCCTGATTTTCTTCTATTC	57.110	33.333	0.00	0.00	0.00	1.75
6613	8836	8.000709	TGGACAATATGCCTGATTTTCTTCTAT	58.999	33.333	0.00	0.00	0.00	1.98
6614	8837	7.345691	TGGACAATATGCCTGATTTTCTTCTA	58.654	34.615	0.00	0.00	0.00	2.10
6616	8839	6.455360	TGGACAATATGCCTGATTTTCTTC	57.545	37.500	0.00	0.00	0.00	2.87
6625	8848	3.072915	TCCCTGTATGGACAATATGCCTG	59.927	47.826	0.00	0.00	38.35	4.85
6627	8850	3.788227	TCCCTGTATGGACAATATGCC	57.212	47.619	0.00	0.00	38.35	4.40
6636	8859	7.734865	ACTGATATTTCTACATCCCTGTATGGA	59.265	37.037	0.00	0.00	37.24	3.41
6702	8927	9.330063	TGGAATGACTAAATATTGAGATGTCAC	57.670	33.333	6.84	0.00	36.10	3.67
6779	9004	5.743636	AAATTGTTGCCAACATCAGGTAT	57.256	34.783	11.67	0.00	41.79	2.73
6780	9005	5.772672	AGTAAATTGTTGCCAACATCAGGTA	59.227	36.000	11.67	0.00	41.79	3.08
6796	9054	3.629142	AGGAACGGAGGGAGTAAATTG	57.371	47.619	0.00	0.00	0.00	2.32
6800	9058	7.786464	ACTTATATTTAGGAACGGAGGGAGTAA	59.214	37.037	0.00	0.00	0.00	2.24
6851	9109	5.079689	TCACTCATTTTGCTCCGTATGTA	57.920	39.130	0.00	0.00	0.00	2.29
6951	9209	1.271379	TGCAAAGCAACTACTCCCTCC	60.271	52.381	0.00	0.00	34.76	4.30
6957	9215	6.094048	CACCATACTTATGCAAAGCAACTACT	59.906	38.462	0.00	0.00	43.62	2.57
7033	9292	4.051237	GCAAACAAACATCTTCCAAGTCC	58.949	43.478	0.00	0.00	0.00	3.85
7115	9379	3.648339	CCAATGGCCTCGAATAATTGG	57.352	47.619	12.80	12.80	40.83	3.16
7155	9419	3.206150	TGAACAGCACAAAGAAGAGTCC	58.794	45.455	0.00	0.00	0.00	3.85
7167	9431	1.068954	GCAGCTTAACCTGAACAGCAC	60.069	52.381	1.80	0.00	34.77	4.40
7308	9572	0.825425	TTTTGCTCGCAATGGGTGGA	60.825	50.000	5.03	0.00	35.70	4.02
7342	9606	4.152223	TGTCGTTACAATGATGAGTTGCTG	59.848	41.667	0.00	0.00	30.91	4.41
7363	9627	3.192001	CAGCACCTGTAGAATTGCAATGT	59.808	43.478	13.82	6.24	37.44	2.71
7531	9797	2.394604	GGCAATCCCGTAGCAGAAC	58.605	57.895	0.00	0.00	0.00	3.01
7698	9972	7.162761	TCCCTGACGTGAATAAGTTTTAATCA	58.837	34.615	0.00	0.00	0.00	2.57
7788	10064	2.783828	GCTATAGTTGAGCTCAGCGA	57.216	50.000	22.76	19.05	36.96	4.93
7799	10075	0.824182	AGGCTCGGCTCGCTATAGTT	60.824	55.000	0.84	0.00	0.00	2.24
7803	10079	2.203422	AGAGGCTCGGCTCGCTAT	60.203	61.111	9.22	0.00	0.00	2.97
7900	10176	6.936279	AGATCGGAGAGAAAATGACAAGTTA	58.064	36.000	0.00	0.00	43.63	2.24
7923	10199	5.633830	AGTTGACATTTGGCATTGACTAG	57.366	39.130	5.10	0.00	30.06	2.57
7950	10226	1.428869	CCATCTACTCCCTGGGAAGG	58.571	60.000	17.81	8.72	0.00	3.46
7955	10231	1.123928	GTGTCCCATCTACTCCCTGG	58.876	60.000	0.00	0.00	0.00	4.45
7956	10232	1.866015	TGTGTCCCATCTACTCCCTG	58.134	55.000	0.00	0.00	0.00	4.45
7957	10233	2.683768	GATGTGTCCCATCTACTCCCT	58.316	52.381	0.00	0.00	45.50	4.20
7986	10262	6.956497	AGAGGTGAGAGCATTTATCTTTCTT	58.044	36.000	0.00	0.00	0.00	2.52
7987	10263	6.558488	AGAGGTGAGAGCATTTATCTTTCT	57.442	37.500	0.00	0.00	0.00	2.52
7988	10264	6.704050	GGTAGAGGTGAGAGCATTTATCTTTC	59.296	42.308	0.00	0.00	0.00	2.62
7989	10265	6.156949	TGGTAGAGGTGAGAGCATTTATCTTT	59.843	38.462	0.00	0.00	0.00	2.52
7990	10266	5.663106	TGGTAGAGGTGAGAGCATTTATCTT	59.337	40.000	0.00	0.00	0.00	2.40
7992	10268	5.537300	TGGTAGAGGTGAGAGCATTTATC	57.463	43.478	0.00	0.00	0.00	1.75
7993	10269	5.604231	TGATGGTAGAGGTGAGAGCATTTAT	59.396	40.000	0.00	0.00	31.72	1.40
7994	10270	4.962362	TGATGGTAGAGGTGAGAGCATTTA	59.038	41.667	0.00	0.00	31.72	1.40
7995	10271	3.776969	TGATGGTAGAGGTGAGAGCATTT	59.223	43.478	0.00	0.00	31.72	2.32
8023	10565	3.491104	GGGAGCGTGGATAGTTTGAGTAG	60.491	52.174	0.00	0.00	0.00	2.57
8029	10571	0.252197	GGTGGGAGCGTGGATAGTTT	59.748	55.000	0.00	0.00	0.00	2.66
8039	10581	5.685841	CGTAAATAAATTATGGTGGGAGCG	58.314	41.667	0.00	0.00	0.00	5.03
8080	10622	3.393089	AGCAAAGTATAGATGCTCCGG	57.607	47.619	0.00	0.00	46.98	5.14
8125	10667	1.852309	TCCTGTGCACCCCAATATCAT	59.148	47.619	15.69	0.00	0.00	2.45
8126	10668	1.294041	TCCTGTGCACCCCAATATCA	58.706	50.000	15.69	0.00	0.00	2.15
8127	10669	2.435372	TTCCTGTGCACCCCAATATC	57.565	50.000	15.69	0.00	0.00	1.63
8128	10670	2.244510	TGATTCCTGTGCACCCCAATAT	59.755	45.455	15.69	0.07	0.00	1.28
8129	10671	1.638070	TGATTCCTGTGCACCCCAATA	59.362	47.619	15.69	0.00	0.00	1.90
8130	10672	0.409092	TGATTCCTGTGCACCCCAAT	59.591	50.000	15.69	9.09	0.00	3.16
8131	10673	0.539438	GTGATTCCTGTGCACCCCAA	60.539	55.000	15.69	4.07	0.00	4.12
8132	10674	1.074775	GTGATTCCTGTGCACCCCA	59.925	57.895	15.69	0.00	0.00	4.96
8133	10675	0.678048	GAGTGATTCCTGTGCACCCC	60.678	60.000	15.69	0.00	33.14	4.95
8134	10676	0.678048	GGAGTGATTCCTGTGCACCC	60.678	60.000	15.69	0.00	43.16	4.61
8135	10677	2.859992	GGAGTGATTCCTGTGCACC	58.140	57.895	15.69	0.00	43.16	5.01
8144	10686	2.093973	ACGACCATGACAGGAGTGATTC	60.094	50.000	0.00	0.00	0.00	2.52
8145	10687	1.902508	ACGACCATGACAGGAGTGATT	59.097	47.619	0.00	0.00	0.00	2.57
8146	10688	1.205655	CACGACCATGACAGGAGTGAT	59.794	52.381	0.00	0.00	40.50	3.06
8147	10689	0.603065	CACGACCATGACAGGAGTGA	59.397	55.000	0.00	0.00	40.50	3.41
8148	10690	0.318441	ACACGACCATGACAGGAGTG	59.682	55.000	0.00	15.16	42.21	3.51
8149	10691	1.048601	AACACGACCATGACAGGAGT	58.951	50.000	0.00	0.00	0.00	3.85
8150	10692	2.417379	CCTAACACGACCATGACAGGAG	60.417	54.545	0.00	0.00	0.00	3.69
8151	10693	1.548719	CCTAACACGACCATGACAGGA	59.451	52.381	0.00	0.00	0.00	3.86
8152	10694	1.275291	ACCTAACACGACCATGACAGG	59.725	52.381	0.00	0.00	33.19	4.00
8153	10695	2.743636	ACCTAACACGACCATGACAG	57.256	50.000	0.00	0.00	0.00	3.51
8154	10696	3.478857	AAACCTAACACGACCATGACA	57.521	42.857	0.00	0.00	0.00	3.58
8155	10697	3.058501	CCAAAACCTAACACGACCATGAC	60.059	47.826	0.00	0.00	0.00	3.06
8156	10698	3.142951	CCAAAACCTAACACGACCATGA	58.857	45.455	0.00	0.00	0.00	3.07
8157	10699	2.227865	CCCAAAACCTAACACGACCATG	59.772	50.000	0.00	0.00	0.00	3.66
8158	10700	2.158579	ACCCAAAACCTAACACGACCAT	60.159	45.455	0.00	0.00	0.00	3.55
8159	10701	1.212441	ACCCAAAACCTAACACGACCA	59.788	47.619	0.00	0.00	0.00	4.02
8160	10702	1.971481	ACCCAAAACCTAACACGACC	58.029	50.000	0.00	0.00	0.00	4.79
8161	10703	3.732212	AGTACCCAAAACCTAACACGAC	58.268	45.455	0.00	0.00	0.00	4.34
8162	10704	4.420522	AAGTACCCAAAACCTAACACGA	57.579	40.909	0.00	0.00	0.00	4.35
8163	10705	4.818005	AGAAAGTACCCAAAACCTAACACG	59.182	41.667	0.00	0.00	0.00	4.49
8164	10706	5.240183	GGAGAAAGTACCCAAAACCTAACAC	59.760	44.000	0.00	0.00	0.00	3.32
8165	10707	5.133153	AGGAGAAAGTACCCAAAACCTAACA	59.867	40.000	0.00	0.00	0.00	2.41
8166	10708	5.472478	CAGGAGAAAGTACCCAAAACCTAAC	59.528	44.000	0.00	0.00	0.00	2.34
8167	10709	5.370289	TCAGGAGAAAGTACCCAAAACCTAA	59.630	40.000	0.00	0.00	0.00	2.69
8168	10710	4.909088	TCAGGAGAAAGTACCCAAAACCTA	59.091	41.667	0.00	0.00	0.00	3.08
8169	10711	3.720002	TCAGGAGAAAGTACCCAAAACCT	59.280	43.478	0.00	0.00	0.00	3.50
8170	10712	3.819337	GTCAGGAGAAAGTACCCAAAACC	59.181	47.826	0.00	0.00	0.00	3.27
8171	10713	3.819337	GGTCAGGAGAAAGTACCCAAAAC	59.181	47.826	0.00	0.00	0.00	2.43
8172	10714	4.094830	GGTCAGGAGAAAGTACCCAAAA	57.905	45.455	0.00	0.00	0.00	2.44
8173	10715	3.782656	GGTCAGGAGAAAGTACCCAAA	57.217	47.619	0.00	0.00	0.00	3.28
8177	10719	1.555533	CCAGGGTCAGGAGAAAGTACC	59.444	57.143	0.00	0.00	0.00	3.34
8178	10720	1.066071	GCCAGGGTCAGGAGAAAGTAC	60.066	57.143	0.00	0.00	0.00	2.73
8179	10721	1.276622	GCCAGGGTCAGGAGAAAGTA	58.723	55.000	0.00	0.00	0.00	2.24
8180	10722	1.831652	CGCCAGGGTCAGGAGAAAGT	61.832	60.000	0.00	0.00	0.00	2.66
8181	10723	1.078848	CGCCAGGGTCAGGAGAAAG	60.079	63.158	0.00	0.00	0.00	2.62
8182	10724	1.827399	GACGCCAGGGTCAGGAGAAA	61.827	60.000	9.73	0.00	36.91	2.52
8183	10725	2.203788	ACGCCAGGGTCAGGAGAA	60.204	61.111	0.00	0.00	0.00	2.87
8184	10726	2.680352	GACGCCAGGGTCAGGAGA	60.680	66.667	9.73	0.00	36.91	3.71
8185	10727	3.775654	GGACGCCAGGGTCAGGAG	61.776	72.222	15.64	0.00	38.70	3.69
8188	10730	3.775654	GAGGGACGCCAGGGTCAG	61.776	72.222	15.64	0.00	38.70	3.51
8189	10731	4.316823	AGAGGGACGCCAGGGTCA	62.317	66.667	15.64	0.00	38.70	4.02
8190	10732	3.462678	GAGAGGGACGCCAGGGTC	61.463	72.222	6.32	6.32	36.18	4.46
8203	10745	2.136878	CCCCATGTCTCCCCGAGAG	61.137	68.421	0.00	0.00	39.53	3.20
8204	10746	2.041922	CCCCATGTCTCCCCGAGA	60.042	66.667	0.00	0.00	36.22	4.04
8205	10747	1.271840	TTTCCCCATGTCTCCCCGAG	61.272	60.000	0.00	0.00	0.00	4.63
8206	10748	1.229690	TTTCCCCATGTCTCCCCGA	60.230	57.895	0.00	0.00	0.00	5.14
8207	10749	1.077716	GTTTCCCCATGTCTCCCCG	60.078	63.158	0.00	0.00	0.00	5.73
8208	10750	1.306633	GGTTTCCCCATGTCTCCCC	59.693	63.158	0.00	0.00	0.00	4.81
8252	10794	3.827898	GTGGAGGGGAGCGACGAG	61.828	72.222	0.00	0.00	0.00	4.18
8255	10797	3.462678	GAGGTGGAGGGGAGCGAC	61.463	72.222	0.00	0.00	0.00	5.19
8298	10840	3.365265	GACACTGCCCGGGCTTTG	61.365	66.667	43.34	37.52	42.51	2.77
8299	10841	4.660938	GGACACTGCCCGGGCTTT	62.661	66.667	43.34	28.55	42.51	3.51
8317	10859	4.459089	GAGAGTCCCCGCTGCCAC	62.459	72.222	0.00	0.00	0.00	5.01
8344	10886	4.851252	ATGGCCAGGAGGAGGGGG	62.851	72.222	13.05	0.00	36.89	5.40
8345	10887	3.496160	CATGGCCAGGAGGAGGGG	61.496	72.222	13.35	0.00	36.89	4.79
8346	10888	3.496160	CCATGGCCAGGAGGAGGG	61.496	72.222	21.32	3.54	36.89	4.30
8347	10889	2.693864	ACCATGGCCAGGAGGAGG	60.694	66.667	21.32	11.93	36.89	4.30
8348	10890	2.304056	ACACCATGGCCAGGAGGAG	61.304	63.158	21.32	17.20	36.89	3.69
8349	10891	2.204136	ACACCATGGCCAGGAGGA	60.204	61.111	21.32	0.00	36.89	3.71
8350	10892	2.044650	CACACCATGGCCAGGAGG	60.045	66.667	21.32	19.07	38.23	4.30
8351	10893	2.044650	CCACACCATGGCCAGGAG	60.045	66.667	21.32	16.86	43.24	3.69
8359	10901	1.303561	CCCTCACACCCACACCATG	60.304	63.158	0.00	0.00	0.00	3.66
8360	10902	1.463214	TCCCTCACACCCACACCAT	60.463	57.895	0.00	0.00	0.00	3.55
8361	10903	2.040359	TCCCTCACACCCACACCA	60.040	61.111	0.00	0.00	0.00	4.17
8362	10904	2.113243	GACTCCCTCACACCCACACC	62.113	65.000	0.00	0.00	0.00	4.16
8363	10905	1.122019	AGACTCCCTCACACCCACAC	61.122	60.000	0.00	0.00	0.00	3.82
8364	10906	0.399949	AAGACTCCCTCACACCCACA	60.400	55.000	0.00	0.00	0.00	4.17
8365	10907	0.035458	CAAGACTCCCTCACACCCAC	59.965	60.000	0.00	0.00	0.00	4.61
8366	10908	1.127567	CCAAGACTCCCTCACACCCA	61.128	60.000	0.00	0.00	0.00	4.51
8367	10909	0.836400	TCCAAGACTCCCTCACACCC	60.836	60.000	0.00	0.00	0.00	4.61
8368	10910	1.280457	ATCCAAGACTCCCTCACACC	58.720	55.000	0.00	0.00	0.00	4.16
8369	10911	3.118592	CCTAATCCAAGACTCCCTCACAC	60.119	52.174	0.00	0.00	0.00	3.82
8370	10912	3.107601	CCTAATCCAAGACTCCCTCACA	58.892	50.000	0.00	0.00	0.00	3.58
8371	10913	2.436173	CCCTAATCCAAGACTCCCTCAC	59.564	54.545	0.00	0.00	0.00	3.51
8372	10914	2.629639	CCCCTAATCCAAGACTCCCTCA	60.630	54.545	0.00	0.00	0.00	3.86
8373	10915	2.050918	CCCCTAATCCAAGACTCCCTC	58.949	57.143	0.00	0.00	0.00	4.30
8374	10916	1.345526	CCCCCTAATCCAAGACTCCCT	60.346	57.143	0.00	0.00	0.00	4.20
8375	10917	1.141185	CCCCCTAATCCAAGACTCCC	58.859	60.000	0.00	0.00	0.00	4.30
8376	10918	1.769465	GACCCCCTAATCCAAGACTCC	59.231	57.143	0.00	0.00	0.00	3.85
8377	10919	1.769465	GGACCCCCTAATCCAAGACTC	59.231	57.143	0.00	0.00	34.87	3.36
8378	10920	1.369983	AGGACCCCCTAATCCAAGACT	59.630	52.381	0.00	0.00	42.15	3.24
8379	10921	1.769465	GAGGACCCCCTAATCCAAGAC	59.231	57.143	0.00	0.00	44.53	3.01
8380	10922	1.691482	CGAGGACCCCCTAATCCAAGA	60.691	57.143	0.00	0.00	44.53	3.02
8381	10923	0.759346	CGAGGACCCCCTAATCCAAG	59.241	60.000	0.00	0.00	44.53	3.61
8382	10924	0.340558	TCGAGGACCCCCTAATCCAA	59.659	55.000	0.00	0.00	44.53	3.53
8383	10925	0.340558	TTCGAGGACCCCCTAATCCA	59.659	55.000	0.00	0.00	44.53	3.41
8384	10926	0.757512	GTTCGAGGACCCCCTAATCC	59.242	60.000	0.00	0.00	44.53	3.01
8385	10927	1.492764	TGTTCGAGGACCCCCTAATC	58.507	55.000	0.00	0.00	44.53	1.75
8386	10928	1.558294	GTTGTTCGAGGACCCCCTAAT	59.442	52.381	0.00	0.00	44.53	1.73
8387	10929	0.978907	GTTGTTCGAGGACCCCCTAA	59.021	55.000	0.00	0.00	44.53	2.69
8388	10930	0.906282	GGTTGTTCGAGGACCCCCTA	60.906	60.000	3.33	0.00	44.53	3.53
8390	10932	2.350134	GGTTGTTCGAGGACCCCC	59.650	66.667	3.33	0.00	0.00	5.40
8391	10933	2.047560	CGGTTGTTCGAGGACCCC	60.048	66.667	7.95	0.00	0.00	4.95
8392	10934	2.047560	CCGGTTGTTCGAGGACCC	60.048	66.667	0.00	0.00	0.00	4.46
8393	10935	1.373873	GTCCGGTTGTTCGAGGACC	60.374	63.158	0.00	6.05	45.39	4.46
8394	10936	4.256813	GTCCGGTTGTTCGAGGAC	57.743	61.111	0.00	3.79	45.07	3.85
8395	10937	1.111116	ACAGTCCGGTTGTTCGAGGA	61.111	55.000	0.00	0.00	0.00	3.71
8396	10938	0.599558	TACAGTCCGGTTGTTCGAGG	59.400	55.000	17.14	0.00	0.00	4.63
8397	10939	2.649331	ATACAGTCCGGTTGTTCGAG	57.351	50.000	17.14	0.00	0.00	4.04
8398	10940	2.159531	CGTATACAGTCCGGTTGTTCGA	60.160	50.000	17.14	3.21	0.00	3.71
8399	10941	2.179589	CGTATACAGTCCGGTTGTTCG	58.820	52.381	17.14	15.03	0.00	3.95
8400	10942	3.221964	ACGTATACAGTCCGGTTGTTC	57.778	47.619	17.14	9.26	0.00	3.18
8401	10943	4.675510	CATACGTATACAGTCCGGTTGTT	58.324	43.478	17.14	9.48	0.00	2.83
8402	10944	3.489738	GCATACGTATACAGTCCGGTTGT	60.490	47.826	7.96	16.38	0.00	3.32
8403	10945	3.047796	GCATACGTATACAGTCCGGTTG	58.952	50.000	7.96	4.06	0.00	3.77
8404	10946	2.035066	GGCATACGTATACAGTCCGGTT	59.965	50.000	7.96	0.00	0.00	4.44
8405	10947	1.610522	GGCATACGTATACAGTCCGGT	59.389	52.381	7.96	0.00	0.00	5.28
8406	10948	1.400629	CGGCATACGTATACAGTCCGG	60.401	57.143	7.96	0.00	37.93	5.14
8407	10949	1.400629	CCGGCATACGTATACAGTCCG	60.401	57.143	7.96	14.45	42.24	4.79
8408	10950	1.881973	TCCGGCATACGTATACAGTCC	59.118	52.381	7.96	4.20	42.24	3.85
8409	10951	2.551459	AGTCCGGCATACGTATACAGTC	59.449	50.000	7.96	0.00	42.24	3.51
8410	10952	2.292569	CAGTCCGGCATACGTATACAGT	59.707	50.000	7.96	4.81	42.24	3.55
8411	10953	2.292569	ACAGTCCGGCATACGTATACAG	59.707	50.000	7.96	3.21	42.24	2.74
8412	10954	2.300433	ACAGTCCGGCATACGTATACA	58.700	47.619	7.96	0.00	42.24	2.29
8413	10955	3.047796	CAACAGTCCGGCATACGTATAC	58.952	50.000	7.96	1.95	42.24	1.47
8414	10956	2.034939	CCAACAGTCCGGCATACGTATA	59.965	50.000	7.96	0.00	42.24	1.47
8415	10957	1.202486	CCAACAGTCCGGCATACGTAT	60.202	52.381	1.14	1.14	42.24	3.06
8416	10958	0.173935	CCAACAGTCCGGCATACGTA	59.826	55.000	0.00	0.00	42.24	3.57
8417	10959	1.079405	CCAACAGTCCGGCATACGT	60.079	57.895	0.00	0.00	42.24	3.57
8418	10960	1.813753	CCCAACAGTCCGGCATACG	60.814	63.158	0.00	0.00	43.80	3.06
8419	10961	2.112815	GCCCAACAGTCCGGCATAC	61.113	63.158	0.00	0.00	42.52	2.39
8420	10962	0.978667	TAGCCCAACAGTCCGGCATA	60.979	55.000	12.32	1.46	45.56	3.14
8421	10963	1.635817	ATAGCCCAACAGTCCGGCAT	61.636	55.000	12.32	2.99	45.56	4.40
8422	10964	2.297895	ATAGCCCAACAGTCCGGCA	61.298	57.895	12.32	1.05	45.56	5.69
8423	10965	1.819632	CATAGCCCAACAGTCCGGC	60.820	63.158	0.00	3.06	43.35	6.13
8424	10966	0.251916	TTCATAGCCCAACAGTCCGG	59.748	55.000	0.00	0.00	0.00	5.14
8425	10967	1.207089	TCTTCATAGCCCAACAGTCCG	59.793	52.381	0.00	0.00	0.00	4.79
8426	10968	3.567478	ATCTTCATAGCCCAACAGTCC	57.433	47.619	0.00	0.00	0.00	3.85
8427	10969	5.023533	TGTATCTTCATAGCCCAACAGTC	57.976	43.478	0.00	0.00	0.00	3.51
8428	10970	5.189736	TCTTGTATCTTCATAGCCCAACAGT	59.810	40.000	0.00	0.00	0.00	3.55
8429	10971	5.674525	TCTTGTATCTTCATAGCCCAACAG	58.325	41.667	0.00	0.00	0.00	3.16
8430	10972	5.692115	TCTTGTATCTTCATAGCCCAACA	57.308	39.130	0.00	0.00	0.00	3.33
8431	10973	7.671302	TCTATCTTGTATCTTCATAGCCCAAC	58.329	38.462	0.00	0.00	0.00	3.77
8432	10974	7.855784	TCTATCTTGTATCTTCATAGCCCAA	57.144	36.000	0.00	0.00	0.00	4.12
8433	10975	7.730332	TCTTCTATCTTGTATCTTCATAGCCCA	59.270	37.037	0.00	0.00	0.00	5.36
8434	10976	8.032451	GTCTTCTATCTTGTATCTTCATAGCCC	58.968	40.741	0.00	0.00	0.00	5.19
8435	10977	8.802267	AGTCTTCTATCTTGTATCTTCATAGCC	58.198	37.037	0.00	0.00	0.00	3.93
8439	10981	8.908903	ACGAAGTCTTCTATCTTGTATCTTCAT	58.091	33.333	10.81	0.00	29.74	2.57
8440	10982	8.282455	ACGAAGTCTTCTATCTTGTATCTTCA	57.718	34.615	10.81	0.00	29.74	3.02
8472	11014	1.555075	CAAAGAAGAGTCCCATCCGGA	59.445	52.381	6.61	6.61	38.83	5.14
8473	11015	1.279271	ACAAAGAAGAGTCCCATCCGG	59.721	52.381	0.00	0.00	0.00	5.14
8474	11016	2.289694	ACACAAAGAAGAGTCCCATCCG	60.290	50.000	0.00	0.00	0.00	4.18
8475	11017	3.077359	CACACAAAGAAGAGTCCCATCC	58.923	50.000	0.00	0.00	0.00	3.51
8476	11018	3.077359	CCACACAAAGAAGAGTCCCATC	58.923	50.000	0.00	0.00	0.00	3.51
8477	11019	2.711009	TCCACACAAAGAAGAGTCCCAT	59.289	45.455	0.00	0.00	0.00	4.00
8478	11020	2.123589	TCCACACAAAGAAGAGTCCCA	58.876	47.619	0.00	0.00	0.00	4.37
8479	11021	2.930826	TCCACACAAAGAAGAGTCCC	57.069	50.000	0.00	0.00	0.00	4.46
8480	11022	3.142174	CCTTCCACACAAAGAAGAGTCC	58.858	50.000	1.42	0.00	41.69	3.85
8481	11023	2.550180	GCCTTCCACACAAAGAAGAGTC	59.450	50.000	1.42	0.00	41.69	3.36
8482	11024	2.092429	TGCCTTCCACACAAAGAAGAGT	60.092	45.455	1.42	0.00	41.69	3.24
8483	11025	2.575532	TGCCTTCCACACAAAGAAGAG	58.424	47.619	1.42	0.00	41.69	2.85
8484	11026	2.727123	TGCCTTCCACACAAAGAAGA	57.273	45.000	1.42	0.00	41.69	2.87
8485	11027	2.544486	GCTTGCCTTCCACACAAAGAAG	60.544	50.000	0.00	0.00	39.38	2.85
8486	11028	1.408702	GCTTGCCTTCCACACAAAGAA	59.591	47.619	0.00	0.00	0.00	2.52
8487	11029	1.032014	GCTTGCCTTCCACACAAAGA	58.968	50.000	0.00	0.00	0.00	2.52
8488	11030	1.035139	AGCTTGCCTTCCACACAAAG	58.965	50.000	0.00	0.00	0.00	2.77
8489	11031	1.136695	CAAGCTTGCCTTCCACACAAA	59.863	47.619	14.65	0.00	0.00	2.83
8490	11032	0.746063	CAAGCTTGCCTTCCACACAA	59.254	50.000	14.65	0.00	0.00	3.33
8491	11033	1.108727	CCAAGCTTGCCTTCCACACA	61.109	55.000	21.43	0.00	0.00	3.72
8492	11034	1.662044	CCAAGCTTGCCTTCCACAC	59.338	57.895	21.43	0.00	0.00	3.82
8493	11035	2.202395	GCCAAGCTTGCCTTCCACA	61.202	57.895	21.43	0.00	0.00	4.17
8494	11036	2.653115	GCCAAGCTTGCCTTCCAC	59.347	61.111	21.43	0.12	0.00	4.02
8495	11037	2.769652	ATCGCCAAGCTTGCCTTCCA	62.770	55.000	21.43	1.33	0.00	3.53
8496	11038	1.598701	AATCGCCAAGCTTGCCTTCC	61.599	55.000	21.43	5.26	0.00	3.46
8497	11039	0.179153	GAATCGCCAAGCTTGCCTTC	60.179	55.000	21.43	14.81	0.00	3.46
8498	11040	1.885871	GAATCGCCAAGCTTGCCTT	59.114	52.632	21.43	10.35	0.00	4.35
8499	11041	2.401766	CGAATCGCCAAGCTTGCCT	61.402	57.895	21.43	2.43	0.00	4.75
8500	11042	2.100991	CGAATCGCCAAGCTTGCC	59.899	61.111	21.43	9.45	0.00	4.52
8501	11043	1.718757	ATCCGAATCGCCAAGCTTGC	61.719	55.000	21.43	14.85	0.00	4.01
8502	11044	1.261619	GTATCCGAATCGCCAAGCTTG	59.738	52.381	19.93	19.93	0.00	4.01
8503	11045	1.583054	GTATCCGAATCGCCAAGCTT	58.417	50.000	0.00	0.00	0.00	3.74
8504	11046	0.597637	CGTATCCGAATCGCCAAGCT	60.598	55.000	0.00	0.00	35.63	3.74
8505	11047	0.596600	TCGTATCCGAATCGCCAAGC	60.597	55.000	0.00	0.00	40.86	4.01
8506	11048	3.562639	TCGTATCCGAATCGCCAAG	57.437	52.632	0.00	0.00	40.86	3.61
8515	11057	5.810587	CAGAAAAAGGAATCTTCGTATCCGA	59.189	40.000	0.00	0.00	42.41	4.55
8516	11058	5.581085	ACAGAAAAAGGAATCTTCGTATCCG	59.419	40.000	0.00	0.00	38.31	4.18
8517	11059	6.986904	ACAGAAAAAGGAATCTTCGTATCC	57.013	37.500	0.00	0.00	31.82	2.59
8518	11060	8.388853	GGTTACAGAAAAAGGAATCTTCGTATC	58.611	37.037	0.00	0.00	31.82	2.24
8519	11061	7.064253	CGGTTACAGAAAAAGGAATCTTCGTAT	59.936	37.037	0.00	0.00	31.82	3.06
8520	11062	6.366877	CGGTTACAGAAAAAGGAATCTTCGTA	59.633	38.462	0.00	0.00	31.82	3.43
8521	11063	5.178809	CGGTTACAGAAAAAGGAATCTTCGT	59.821	40.000	0.00	0.00	31.82	3.85
8522	11064	5.407387	TCGGTTACAGAAAAAGGAATCTTCG	59.593	40.000	0.00	0.00	31.82	3.79
8523	11065	6.427242	AGTCGGTTACAGAAAAAGGAATCTTC	59.573	38.462	0.00	0.00	31.82	2.87
8524	11066	6.296803	AGTCGGTTACAGAAAAAGGAATCTT	58.703	36.000	0.00	0.00	34.07	2.40
8525	11067	5.866207	AGTCGGTTACAGAAAAAGGAATCT	58.134	37.500	0.00	0.00	0.00	2.40
8526	11068	6.555812	AAGTCGGTTACAGAAAAAGGAATC	57.444	37.500	0.00	0.00	0.00	2.52
8527	11069	6.320418	ACAAAGTCGGTTACAGAAAAAGGAAT	59.680	34.615	0.00	0.00	0.00	3.01
8528	11070	5.648960	ACAAAGTCGGTTACAGAAAAAGGAA	59.351	36.000	0.00	0.00	0.00	3.36
8529	11071	5.065474	CACAAAGTCGGTTACAGAAAAAGGA	59.935	40.000	0.00	0.00	0.00	3.36
8530	11072	5.163693	ACACAAAGTCGGTTACAGAAAAAGG	60.164	40.000	0.00	0.00	0.00	3.11
8531	11073	5.875930	ACACAAAGTCGGTTACAGAAAAAG	58.124	37.500	0.00	0.00	0.00	2.27
8532	11074	5.883503	ACACAAAGTCGGTTACAGAAAAA	57.116	34.783	0.00	0.00	0.00	1.94
8533	11075	6.183360	GGTTACACAAAGTCGGTTACAGAAAA	60.183	38.462	0.00	0.00	0.00	2.29
8534	11076	5.294060	GGTTACACAAAGTCGGTTACAGAAA	59.706	40.000	0.00	0.00	0.00	2.52
8535	11077	4.810491	GGTTACACAAAGTCGGTTACAGAA	59.190	41.667	0.00	0.00	0.00	3.02
8536	11078	4.370917	GGTTACACAAAGTCGGTTACAGA	58.629	43.478	0.00	0.00	0.00	3.41
8537	11079	4.720530	GGTTACACAAAGTCGGTTACAG	57.279	45.455	0.00	0.00	0.00	2.74

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.