Multiple sequence alignment - TraesCS3B01G216500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G216500 chr3B 100.000 3786 0 0 1 3786 257321557 257317772 0.000000e+00 6992
1 TraesCS3B01G216500 chr3B 76.902 368 61 13 2 366 439342012 439341666 1.800000e-43 187
2 TraesCS3B01G216500 chr3A 94.385 1977 75 10 1152 3124 222043788 222041844 0.000000e+00 3003
3 TraesCS3B01G216500 chr3A 94.895 333 11 3 792 1123 222044106 222043779 2.020000e-142 516
4 TraesCS3B01G216500 chr3A 95.812 191 6 2 3597 3786 222037961 222037772 1.320000e-79 307
5 TraesCS3B01G216500 chr3A 92.453 159 11 1 3371 3528 222038663 222038505 3.810000e-55 226
6 TraesCS3B01G216500 chr3A 93.043 115 7 1 384 498 222141855 222141742 2.340000e-37 167
7 TraesCS3B01G216500 chr3A 93.684 95 6 0 3273 3367 222038834 222038740 3.940000e-30 143
8 TraesCS3B01G216500 chr3A 73.430 414 87 18 44 450 694024554 694024951 2.370000e-27 134
9 TraesCS3B01G216500 chr3D 91.317 1071 42 8 2207 3273 179233686 179232663 0.000000e+00 1415
10 TraesCS3B01G216500 chr3D 94.868 721 22 4 1510 2223 179234648 179233936 0.000000e+00 1112
11 TraesCS3B01G216500 chr3D 89.919 496 21 6 638 1122 179235879 179235402 2.500000e-171 612
12 TraesCS3B01G216500 chr3D 95.935 369 14 1 1152 1519 179235410 179235042 7.000000e-167 597
13 TraesCS3B01G216500 chr3D 89.978 449 34 8 176 620 179352835 179352394 1.530000e-158 569
14 TraesCS3B01G216500 chr3D 91.603 262 19 3 3527 3786 179216360 179216100 3.600000e-95 359
15 TraesCS3B01G216500 chr3D 94.737 95 5 0 3273 3367 179219050 179218956 8.470000e-32 148
16 TraesCS3B01G216500 chr3D 97.222 72 2 0 3457 3528 179216635 179216564 5.140000e-24 122
17 TraesCS3B01G216500 chr1D 76.977 430 71 19 1 407 319539624 319539200 1.770000e-53 220
18 TraesCS3B01G216500 chr1D 81.614 223 28 9 511 729 494305096 494304883 5.030000e-39 172
19 TraesCS3B01G216500 chr2D 77.311 357 68 12 16 366 236160037 236160386 8.300000e-47 198
20 TraesCS3B01G216500 chr2A 82.160 213 29 7 514 720 280100495 280100704 1.400000e-39 174
21 TraesCS3B01G216500 chr2A 82.412 199 31 4 511 705 81720500 81720698 1.810000e-38 171
22 TraesCS3B01G216500 chr2A 76.323 359 60 22 72 419 273409341 273409685 6.500000e-38 169
23 TraesCS3B01G216500 chr2A 74.719 356 70 17 72 419 273305587 273305930 1.420000e-29 141
24 TraesCS3B01G216500 chr7D 82.075 212 25 4 511 720 439472889 439473089 6.500000e-38 169
25 TraesCS3B01G216500 chr2B 75.472 371 70 14 1 366 725570709 725570355 1.090000e-35 161
26 TraesCS3B01G216500 chr2B 83.333 132 14 7 520 644 415060993 415060863 8.590000e-22 115
27 TraesCS3B01G216500 chr1A 79.098 244 41 10 127 366 570580630 570580393 3.910000e-35 159
28 TraesCS3B01G216500 chrUn 83.234 167 24 3 555 720 254234 254397 2.360000e-32 150
29 TraesCS3B01G216500 chr7A 79.452 219 38 4 514 729 252951744 252951530 8.470000e-32 148
30 TraesCS3B01G216500 chr1B 78.846 208 35 7 511 716 485672703 485672903 8.530000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G216500 chr3B 257317772 257321557 3785 True 6992.000000 6992 100.000000 1 3786 1 chr3B.!!$R1 3785
1 TraesCS3B01G216500 chr3A 222037772 222044106 6334 True 839.000000 3003 94.245800 792 3786 5 chr3A.!!$R2 2994
2 TraesCS3B01G216500 chr3D 179232663 179235879 3216 True 934.000000 1415 93.009750 638 3273 4 chr3D.!!$R3 2635
3 TraesCS3B01G216500 chr3D 179216100 179219050 2950 True 209.666667 359 94.520667 3273 3786 3 chr3D.!!$R2 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
507 508 0.034089 CTGCCCCTTCCCTTTACCTG 60.034 60.0 0.00 0.0 0.00 4.00 F
545 546 0.034337 TGAAGTAACACCGCCCTGAC 59.966 55.0 0.00 0.0 0.00 3.51 F
703 704 0.109597 GAATTGCTTCCTGCCACACG 60.110 55.0 0.00 0.0 42.00 4.49 F
850 851 0.178961 GAAAAGGCCTCCAACTGGGT 60.179 55.0 5.23 0.0 38.11 4.51 F
1190 1203 0.180171 ATGGTGCCGTATGCTTGCTA 59.820 50.0 0.00 0.0 42.00 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1792 2209 0.891904 GGGGGCGAGTGCACTAAAAA 60.892 55.000 21.73 0.00 46.54 1.94 R
1793 2210 1.302993 GGGGGCGAGTGCACTAAAA 60.303 57.895 21.73 0.00 46.54 1.52 R
1794 2211 2.058125 TTGGGGGCGAGTGCACTAAA 62.058 55.000 21.73 3.19 46.54 1.85 R
1795 2212 2.521451 TTGGGGGCGAGTGCACTAA 61.521 57.895 21.73 5.51 46.54 2.24 R
3057 3752 1.147817 AGGTCCCAAGCAAGATTTGGT 59.852 47.619 3.60 0.00 42.85 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.292389 CAAAGGTTCACTCGGATATCATTC 57.708 41.667 4.83 0.00 0.00 2.67
24 25 4.244425 AGGTTCACTCGGATATCATTCG 57.756 45.455 4.83 0.00 0.00 3.34
25 26 3.637229 AGGTTCACTCGGATATCATTCGT 59.363 43.478 4.83 0.00 0.00 3.85
26 27 4.825634 AGGTTCACTCGGATATCATTCGTA 59.174 41.667 4.83 0.00 0.00 3.43
27 28 5.477291 AGGTTCACTCGGATATCATTCGTAT 59.523 40.000 4.83 0.00 0.00 3.06
28 29 5.573282 GGTTCACTCGGATATCATTCGTATG 59.427 44.000 4.83 0.00 0.00 2.39
29 30 6.379386 GTTCACTCGGATATCATTCGTATGA 58.621 40.000 7.21 7.21 44.52 2.15
30 31 6.183309 TCACTCGGATATCATTCGTATGAG 57.817 41.667 10.58 0.00 43.70 2.90
31 32 5.705905 TCACTCGGATATCATTCGTATGAGT 59.294 40.000 10.58 2.12 43.70 3.41
32 33 5.797434 CACTCGGATATCATTCGTATGAGTG 59.203 44.000 10.58 7.25 43.70 3.51
33 34 5.473846 ACTCGGATATCATTCGTATGAGTGT 59.526 40.000 10.58 1.53 43.70 3.55
34 35 6.653740 ACTCGGATATCATTCGTATGAGTGTA 59.346 38.462 10.58 0.00 43.70 2.90
35 36 6.839033 TCGGATATCATTCGTATGAGTGTAC 58.161 40.000 10.58 0.00 43.70 2.90
36 37 5.733109 CGGATATCATTCGTATGAGTGTACG 59.267 44.000 10.58 7.40 43.70 3.67
37 38 6.028368 GGATATCATTCGTATGAGTGTACGG 58.972 44.000 10.58 0.00 45.52 4.02
38 39 3.703286 TCATTCGTATGAGTGTACGGG 57.297 47.619 7.27 0.00 45.52 5.28
39 40 2.124903 CATTCGTATGAGTGTACGGGC 58.875 52.381 6.62 0.00 45.52 6.13
40 41 0.457035 TTCGTATGAGTGTACGGGCC 59.543 55.000 0.00 0.00 45.52 5.80
41 42 0.394762 TCGTATGAGTGTACGGGCCT 60.395 55.000 0.84 0.00 45.52 5.19
42 43 1.134128 TCGTATGAGTGTACGGGCCTA 60.134 52.381 0.84 0.00 45.52 3.93
43 44 1.884579 CGTATGAGTGTACGGGCCTAT 59.115 52.381 0.84 0.00 42.68 2.57
44 45 3.076621 CGTATGAGTGTACGGGCCTATA 58.923 50.000 0.84 0.00 42.68 1.31
45 46 3.693085 CGTATGAGTGTACGGGCCTATAT 59.307 47.826 0.84 0.00 42.68 0.86
46 47 4.438336 CGTATGAGTGTACGGGCCTATATG 60.438 50.000 0.84 0.00 42.68 1.78
47 48 2.244695 TGAGTGTACGGGCCTATATGG 58.755 52.381 0.84 0.00 39.35 2.74
48 49 2.158430 TGAGTGTACGGGCCTATATGGA 60.158 50.000 0.84 0.00 38.35 3.41
49 50 3.097614 GAGTGTACGGGCCTATATGGAT 58.902 50.000 0.84 0.00 38.35 3.41
50 51 2.832129 AGTGTACGGGCCTATATGGATG 59.168 50.000 0.84 0.00 38.35 3.51
51 52 2.565834 GTGTACGGGCCTATATGGATGT 59.434 50.000 0.84 0.00 38.35 3.06
52 53 2.829720 TGTACGGGCCTATATGGATGTC 59.170 50.000 0.84 0.00 38.35 3.06
53 54 1.276622 ACGGGCCTATATGGATGTCC 58.723 55.000 0.84 0.00 38.35 4.02
63 64 3.476740 TGGATGTCCAAGATTCCGC 57.523 52.632 0.00 0.00 44.35 5.54
64 65 0.911769 TGGATGTCCAAGATTCCGCT 59.088 50.000 0.00 0.00 44.35 5.52
65 66 2.115427 TGGATGTCCAAGATTCCGCTA 58.885 47.619 0.00 0.00 44.35 4.26
66 67 2.503765 TGGATGTCCAAGATTCCGCTAA 59.496 45.455 0.00 0.00 44.35 3.09
67 68 3.136443 TGGATGTCCAAGATTCCGCTAAT 59.864 43.478 0.00 0.00 44.35 1.73
68 69 4.346709 TGGATGTCCAAGATTCCGCTAATA 59.653 41.667 0.00 0.00 44.35 0.98
69 70 5.163248 TGGATGTCCAAGATTCCGCTAATAA 60.163 40.000 0.00 0.00 44.35 1.40
70 71 5.940470 GGATGTCCAAGATTCCGCTAATAAT 59.060 40.000 0.00 0.00 35.64 1.28
71 72 6.431234 GGATGTCCAAGATTCCGCTAATAATT 59.569 38.462 0.00 0.00 35.64 1.40
72 73 7.606456 GGATGTCCAAGATTCCGCTAATAATTA 59.394 37.037 0.00 0.00 35.64 1.40
73 74 9.167311 GATGTCCAAGATTCCGCTAATAATTAT 57.833 33.333 0.00 0.00 0.00 1.28
74 75 8.918202 TGTCCAAGATTCCGCTAATAATTATT 57.082 30.769 14.86 14.86 0.00 1.40
75 76 8.783093 TGTCCAAGATTCCGCTAATAATTATTG 58.217 33.333 18.98 10.84 0.00 1.90
76 77 8.999431 GTCCAAGATTCCGCTAATAATTATTGA 58.001 33.333 18.98 6.44 0.00 2.57
77 78 9.567776 TCCAAGATTCCGCTAATAATTATTGAA 57.432 29.630 18.98 13.86 0.00 2.69
78 79 9.612620 CCAAGATTCCGCTAATAATTATTGAAC 57.387 33.333 18.98 8.41 0.00 3.18
79 80 9.318041 CAAGATTCCGCTAATAATTATTGAACG 57.682 33.333 18.98 17.38 0.00 3.95
80 81 8.827177 AGATTCCGCTAATAATTATTGAACGA 57.173 30.769 18.98 7.97 0.00 3.85
81 82 9.268268 AGATTCCGCTAATAATTATTGAACGAA 57.732 29.630 18.98 14.63 0.00 3.85
82 83 9.872757 GATTCCGCTAATAATTATTGAACGAAA 57.127 29.630 18.98 10.91 0.00 3.46
83 84 9.878599 ATTCCGCTAATAATTATTGAACGAAAG 57.121 29.630 18.98 8.74 0.00 2.62
116 117 9.685276 TGTTCATGTCTATATTTCATTGAACCT 57.315 29.630 0.00 0.00 33.81 3.50
122 123 9.613428 TGTCTATATTTCATTGAACCTACAAGG 57.387 33.333 0.00 0.00 42.49 3.61
132 133 3.606886 CCTACAAGGTCACACGCTT 57.393 52.632 0.00 0.00 0.00 4.68
133 134 2.736144 CCTACAAGGTCACACGCTTA 57.264 50.000 0.00 0.00 0.00 3.09
134 135 3.034721 CCTACAAGGTCACACGCTTAA 57.965 47.619 0.00 0.00 0.00 1.85
135 136 2.993899 CCTACAAGGTCACACGCTTAAG 59.006 50.000 0.00 0.00 0.00 1.85
136 137 1.878953 ACAAGGTCACACGCTTAAGG 58.121 50.000 4.29 0.00 0.00 2.69
137 138 0.517316 CAAGGTCACACGCTTAAGGC 59.483 55.000 4.29 0.00 37.64 4.35
138 139 0.107831 AAGGTCACACGCTTAAGGCA 59.892 50.000 4.29 0.00 41.91 4.75
139 140 0.324943 AGGTCACACGCTTAAGGCAT 59.675 50.000 4.29 0.00 41.91 4.40
140 141 1.165270 GGTCACACGCTTAAGGCATT 58.835 50.000 4.29 0.00 41.91 3.56
141 142 2.027561 AGGTCACACGCTTAAGGCATTA 60.028 45.455 4.29 0.00 41.91 1.90
142 143 2.943033 GGTCACACGCTTAAGGCATTAT 59.057 45.455 4.29 0.00 41.91 1.28
143 144 3.242739 GGTCACACGCTTAAGGCATTATG 60.243 47.826 4.29 0.00 41.91 1.90
144 145 3.621268 GTCACACGCTTAAGGCATTATGA 59.379 43.478 8.07 0.00 41.91 2.15
145 146 4.273480 GTCACACGCTTAAGGCATTATGAT 59.727 41.667 8.07 0.00 41.91 2.45
146 147 4.511454 TCACACGCTTAAGGCATTATGATC 59.489 41.667 8.07 0.00 41.91 2.92
147 148 3.815401 ACACGCTTAAGGCATTATGATCC 59.185 43.478 8.07 0.00 41.91 3.36
148 149 3.189287 CACGCTTAAGGCATTATGATCCC 59.811 47.826 8.07 0.00 41.91 3.85
149 150 3.073062 ACGCTTAAGGCATTATGATCCCT 59.927 43.478 8.07 0.00 41.91 4.20
150 151 4.074970 CGCTTAAGGCATTATGATCCCTT 58.925 43.478 8.07 0.00 41.91 3.95
151 152 4.083110 CGCTTAAGGCATTATGATCCCTTG 60.083 45.833 2.93 0.00 41.91 3.61
152 153 5.072741 GCTTAAGGCATTATGATCCCTTGA 58.927 41.667 2.93 0.00 38.13 3.02
153 154 5.182760 GCTTAAGGCATTATGATCCCTTGAG 59.817 44.000 7.43 7.43 41.43 3.02
154 155 4.803329 AAGGCATTATGATCCCTTGAGT 57.197 40.909 0.00 0.00 36.39 3.41
155 156 4.803329 AGGCATTATGATCCCTTGAGTT 57.197 40.909 0.00 0.00 0.00 3.01
156 157 5.134725 AGGCATTATGATCCCTTGAGTTT 57.865 39.130 0.00 0.00 0.00 2.66
157 158 5.522641 AGGCATTATGATCCCTTGAGTTTT 58.477 37.500 0.00 0.00 0.00 2.43
158 159 6.672593 AGGCATTATGATCCCTTGAGTTTTA 58.327 36.000 0.00 0.00 0.00 1.52
159 160 7.300658 AGGCATTATGATCCCTTGAGTTTTAT 58.699 34.615 0.00 0.00 0.00 1.40
160 161 8.448008 AGGCATTATGATCCCTTGAGTTTTATA 58.552 33.333 0.00 0.00 0.00 0.98
161 162 8.734386 GGCATTATGATCCCTTGAGTTTTATAG 58.266 37.037 0.00 0.00 0.00 1.31
162 163 8.734386 GCATTATGATCCCTTGAGTTTTATAGG 58.266 37.037 0.00 0.00 0.00 2.57
165 166 7.698163 ATGATCCCTTGAGTTTTATAGGAGT 57.302 36.000 0.00 0.00 0.00 3.85
166 167 7.510675 TGATCCCTTGAGTTTTATAGGAGTT 57.489 36.000 0.00 0.00 0.00 3.01
167 168 8.618240 TGATCCCTTGAGTTTTATAGGAGTTA 57.382 34.615 0.00 0.00 0.00 2.24
168 169 8.705594 TGATCCCTTGAGTTTTATAGGAGTTAG 58.294 37.037 0.00 0.00 0.00 2.34
169 170 7.433537 TCCCTTGAGTTTTATAGGAGTTAGG 57.566 40.000 0.00 0.00 0.00 2.69
170 171 7.194050 TCCCTTGAGTTTTATAGGAGTTAGGA 58.806 38.462 0.00 0.00 0.00 2.94
171 172 7.681168 TCCCTTGAGTTTTATAGGAGTTAGGAA 59.319 37.037 0.00 0.00 0.00 3.36
172 173 8.495260 CCCTTGAGTTTTATAGGAGTTAGGAAT 58.505 37.037 0.00 0.00 0.00 3.01
237 238 5.602628 AGTTTTGAGAGAAACTAGAAGCGT 58.397 37.500 0.00 0.00 45.38 5.07
238 239 6.049790 AGTTTTGAGAGAAACTAGAAGCGTT 58.950 36.000 0.00 0.00 45.38 4.84
239 240 6.539103 AGTTTTGAGAGAAACTAGAAGCGTTT 59.461 34.615 0.00 0.00 45.38 3.60
240 241 6.526566 TTTGAGAGAAACTAGAAGCGTTTC 57.473 37.500 3.49 3.49 46.50 2.78
246 247 5.765072 GAAACTAGAAGCGTTTCGAGATT 57.235 39.130 24.51 19.59 40.31 2.40
247 248 6.866179 GAAACTAGAAGCGTTTCGAGATTA 57.134 37.500 24.51 3.87 40.31 1.75
248 249 6.872670 AAACTAGAAGCGTTTCGAGATTAG 57.127 37.500 24.51 14.16 38.03 1.73
249 250 4.352887 ACTAGAAGCGTTTCGAGATTAGC 58.647 43.478 24.51 0.00 38.03 3.09
250 251 2.186076 AGAAGCGTTTCGAGATTAGCG 58.814 47.619 6.35 0.00 38.38 4.26
251 252 1.255600 GAAGCGTTTCGAGATTAGCGG 59.744 52.381 0.00 0.00 0.00 5.52
252 253 0.454600 AGCGTTTCGAGATTAGCGGA 59.545 50.000 0.00 0.00 0.00 5.54
253 254 1.135199 AGCGTTTCGAGATTAGCGGAA 60.135 47.619 0.00 0.00 0.00 4.30
254 255 1.255600 GCGTTTCGAGATTAGCGGAAG 59.744 52.381 0.00 0.00 0.00 3.46
255 256 2.793933 CGTTTCGAGATTAGCGGAAGA 58.206 47.619 0.00 0.00 0.00 2.87
256 257 2.784380 CGTTTCGAGATTAGCGGAAGAG 59.216 50.000 0.00 0.00 0.00 2.85
257 258 3.731264 CGTTTCGAGATTAGCGGAAGAGT 60.731 47.826 0.00 0.00 0.00 3.24
258 259 4.174762 GTTTCGAGATTAGCGGAAGAGTT 58.825 43.478 0.00 0.00 0.00 3.01
259 260 4.451629 TTCGAGATTAGCGGAAGAGTTT 57.548 40.909 0.00 0.00 0.00 2.66
260 261 4.030134 TCGAGATTAGCGGAAGAGTTTC 57.970 45.455 0.00 0.00 0.00 2.78
261 262 2.784380 CGAGATTAGCGGAAGAGTTTCG 59.216 50.000 0.00 0.00 33.98 3.46
262 263 3.487042 CGAGATTAGCGGAAGAGTTTCGA 60.487 47.826 0.00 0.00 33.98 3.71
263 264 4.421948 GAGATTAGCGGAAGAGTTTCGAA 58.578 43.478 0.00 0.00 33.98 3.71
264 265 4.425520 AGATTAGCGGAAGAGTTTCGAAG 58.574 43.478 0.00 0.00 33.98 3.79
265 266 3.928727 TTAGCGGAAGAGTTTCGAAGA 57.071 42.857 0.00 0.00 33.98 2.87
266 267 2.814280 AGCGGAAGAGTTTCGAAGAA 57.186 45.000 0.00 0.00 45.90 2.52
267 268 3.320673 AGCGGAAGAGTTTCGAAGAAT 57.679 42.857 0.00 0.00 45.90 2.40
268 269 4.451629 AGCGGAAGAGTTTCGAAGAATA 57.548 40.909 0.00 0.00 45.90 1.75
269 270 4.425520 AGCGGAAGAGTTTCGAAGAATAG 58.574 43.478 0.00 0.00 45.90 1.73
270 271 3.000423 GCGGAAGAGTTTCGAAGAATAGC 60.000 47.826 0.00 0.00 45.90 2.97
271 272 3.240861 CGGAAGAGTTTCGAAGAATAGCG 59.759 47.826 0.00 0.00 45.90 4.26
272 273 4.421948 GGAAGAGTTTCGAAGAATAGCGA 58.578 43.478 0.00 0.00 45.90 4.93
273 274 4.501198 GGAAGAGTTTCGAAGAATAGCGAG 59.499 45.833 0.00 0.00 45.90 5.03
274 275 4.705337 AGAGTTTCGAAGAATAGCGAGT 57.295 40.909 0.00 0.00 45.90 4.18
275 276 5.814764 AGAGTTTCGAAGAATAGCGAGTA 57.185 39.130 0.00 0.00 45.90 2.59
276 277 6.192234 AGAGTTTCGAAGAATAGCGAGTAA 57.808 37.500 0.00 0.00 45.90 2.24
277 278 6.797454 AGAGTTTCGAAGAATAGCGAGTAAT 58.203 36.000 0.00 0.00 45.90 1.89
278 279 7.928103 AGAGTTTCGAAGAATAGCGAGTAATA 58.072 34.615 0.00 0.00 45.90 0.98
279 280 7.856894 AGAGTTTCGAAGAATAGCGAGTAATAC 59.143 37.037 0.00 0.00 45.90 1.89
280 281 7.705214 AGTTTCGAAGAATAGCGAGTAATACT 58.295 34.615 0.00 0.00 45.90 2.12
281 282 8.834465 AGTTTCGAAGAATAGCGAGTAATACTA 58.166 33.333 0.00 0.00 45.90 1.82
282 283 9.609950 GTTTCGAAGAATAGCGAGTAATACTAT 57.390 33.333 0.00 0.00 45.90 2.12
329 330 9.226879 GGGACCTAATATAAATAATAGAGGGCT 57.773 37.037 0.00 0.00 36.20 5.19
332 333 9.799223 ACCTAATATAAATAATAGAGGGCTCCA 57.201 33.333 0.00 0.00 33.87 3.86
341 342 9.755122 AAATAATAGAGGGCTCCAATATTTACC 57.245 33.333 0.00 0.00 0.00 2.85
342 343 6.780198 AATAGAGGGCTCCAATATTTACCA 57.220 37.500 0.00 0.00 0.00 3.25
343 344 6.780198 ATAGAGGGCTCCAATATTTACCAA 57.220 37.500 0.00 0.00 0.00 3.67
344 345 5.053978 AGAGGGCTCCAATATTTACCAAG 57.946 43.478 0.00 0.00 0.00 3.61
345 346 4.726825 AGAGGGCTCCAATATTTACCAAGA 59.273 41.667 0.00 0.00 0.00 3.02
346 347 5.053978 AGGGCTCCAATATTTACCAAGAG 57.946 43.478 0.00 0.00 0.00 2.85
347 348 4.141158 AGGGCTCCAATATTTACCAAGAGG 60.141 45.833 0.00 0.00 42.21 3.69
369 370 8.336987 AGAGGTCCATAATATTTATTTAGGGGC 58.663 37.037 0.00 0.00 0.00 5.80
370 371 8.244665 AGGTCCATAATATTTATTTAGGGGCT 57.755 34.615 0.00 0.00 0.00 5.19
371 372 8.688117 AGGTCCATAATATTTATTTAGGGGCTT 58.312 33.333 0.00 0.00 0.00 4.35
372 373 9.321532 GGTCCATAATATTTATTTAGGGGCTTT 57.678 33.333 0.00 0.00 0.00 3.51
376 377 9.860898 CATAATATTTATTTAGGGGCTTTGAGC 57.139 33.333 0.00 0.00 41.46 4.26
377 378 9.828691 ATAATATTTATTTAGGGGCTTTGAGCT 57.171 29.630 0.00 0.00 41.99 4.09
379 380 9.654919 AATATTTATTTAGGGGCTTTGAGCTAA 57.345 29.630 0.00 0.00 41.99 3.09
380 381 9.828691 ATATTTATTTAGGGGCTTTGAGCTAAT 57.171 29.630 0.00 0.00 41.99 1.73
382 383 8.691661 TTTATTTAGGGGCTTTGAGCTAATAG 57.308 34.615 0.00 0.00 41.99 1.73
383 384 5.968676 TTTAGGGGCTTTGAGCTAATAGA 57.031 39.130 0.00 0.00 41.99 1.98
384 385 5.968676 TTAGGGGCTTTGAGCTAATAGAA 57.031 39.130 0.00 0.00 41.99 2.10
385 386 6.515512 TTAGGGGCTTTGAGCTAATAGAAT 57.484 37.500 0.00 0.00 41.99 2.40
386 387 4.723309 AGGGGCTTTGAGCTAATAGAATG 58.277 43.478 0.00 0.00 41.99 2.67
387 388 3.823304 GGGGCTTTGAGCTAATAGAATGG 59.177 47.826 0.00 0.00 41.99 3.16
388 389 3.254411 GGGCTTTGAGCTAATAGAATGGC 59.746 47.826 0.00 0.00 41.99 4.40
389 390 4.140536 GGCTTTGAGCTAATAGAATGGCT 58.859 43.478 0.00 0.00 41.99 4.75
390 391 5.308825 GGCTTTGAGCTAATAGAATGGCTA 58.691 41.667 0.00 0.00 41.99 3.93
391 392 5.765182 GGCTTTGAGCTAATAGAATGGCTAA 59.235 40.000 0.00 0.00 41.99 3.09
392 393 6.263168 GGCTTTGAGCTAATAGAATGGCTAAA 59.737 38.462 0.00 0.00 41.99 1.85
393 394 7.358830 GCTTTGAGCTAATAGAATGGCTAAAG 58.641 38.462 0.00 0.00 38.45 1.85
394 395 7.521261 GCTTTGAGCTAATAGAATGGCTAAAGG 60.521 40.741 0.00 0.00 38.45 3.11
395 396 5.308825 TGAGCTAATAGAATGGCTAAAGGC 58.691 41.667 0.00 0.00 41.50 4.35
406 407 1.435256 GCTAAAGGCCTCATAGGGGA 58.565 55.000 21.12 0.00 35.37 4.81
407 408 1.774856 GCTAAAGGCCTCATAGGGGAA 59.225 52.381 21.12 0.00 35.37 3.97
408 409 2.174854 GCTAAAGGCCTCATAGGGGAAA 59.825 50.000 21.12 0.00 35.37 3.13
409 410 3.372675 GCTAAAGGCCTCATAGGGGAAAA 60.373 47.826 21.12 0.00 35.37 2.29
410 411 3.388552 AAAGGCCTCATAGGGGAAAAG 57.611 47.619 5.23 0.00 35.37 2.27
411 412 1.987080 AGGCCTCATAGGGGAAAAGT 58.013 50.000 0.00 0.00 35.37 2.66
412 413 2.288525 AGGCCTCATAGGGGAAAAGTT 58.711 47.619 0.00 0.00 35.37 2.66
413 414 2.024941 AGGCCTCATAGGGGAAAAGTTG 60.025 50.000 0.00 0.00 35.37 3.16
414 415 2.025321 GGCCTCATAGGGGAAAAGTTGA 60.025 50.000 0.00 0.00 35.37 3.18
415 416 3.373110 GGCCTCATAGGGGAAAAGTTGAT 60.373 47.826 0.00 0.00 35.37 2.57
416 417 3.633986 GCCTCATAGGGGAAAAGTTGATG 59.366 47.826 0.00 0.00 35.37 3.07
417 418 4.210331 CCTCATAGGGGAAAAGTTGATGG 58.790 47.826 0.00 0.00 0.00 3.51
418 419 4.210331 CTCATAGGGGAAAAGTTGATGGG 58.790 47.826 0.00 0.00 0.00 4.00
419 420 2.525105 TAGGGGAAAAGTTGATGGGC 57.475 50.000 0.00 0.00 0.00 5.36
420 421 0.252239 AGGGGAAAAGTTGATGGGCC 60.252 55.000 0.00 0.00 0.00 5.80
421 422 0.252239 GGGGAAAAGTTGATGGGCCT 60.252 55.000 4.53 0.00 0.00 5.19
422 423 1.006639 GGGGAAAAGTTGATGGGCCTA 59.993 52.381 4.53 0.00 0.00 3.93
423 424 2.359249 GGGGAAAAGTTGATGGGCCTAT 60.359 50.000 0.00 0.00 0.00 2.57
424 425 3.374764 GGGAAAAGTTGATGGGCCTATT 58.625 45.455 1.86 0.00 0.00 1.73
425 426 3.132824 GGGAAAAGTTGATGGGCCTATTG 59.867 47.826 1.86 0.00 0.00 1.90
426 427 3.132824 GGAAAAGTTGATGGGCCTATTGG 59.867 47.826 1.86 0.00 0.00 3.16
427 428 2.459555 AAGTTGATGGGCCTATTGGG 57.540 50.000 1.86 0.00 38.36 4.12
438 439 2.887151 CCTATTGGGCCTGATAAGGG 57.113 55.000 4.53 0.00 0.00 3.95
439 440 1.355720 CCTATTGGGCCTGATAAGGGG 59.644 57.143 4.53 0.00 0.00 4.79
440 441 2.065799 CTATTGGGCCTGATAAGGGGT 58.934 52.381 4.53 0.00 0.00 4.95
441 442 0.557729 ATTGGGCCTGATAAGGGGTG 59.442 55.000 4.53 0.00 0.00 4.61
442 443 1.580066 TTGGGCCTGATAAGGGGTGG 61.580 60.000 4.53 0.00 0.00 4.61
443 444 2.195956 GGCCTGATAAGGGGTGGC 59.804 66.667 0.00 0.00 42.56 5.01
444 445 2.203209 GCCTGATAAGGGGTGGCG 60.203 66.667 0.00 0.00 33.96 5.69
445 446 2.203209 CCTGATAAGGGGTGGCGC 60.203 66.667 0.00 0.00 0.00 6.53
446 447 2.203209 CTGATAAGGGGTGGCGCC 60.203 66.667 22.73 22.73 36.67 6.53
467 468 3.565214 TGGCGCACCAAGGAAGGA 61.565 61.111 10.83 0.00 45.37 3.36
468 469 2.044946 GGCGCACCAAGGAAGGAT 60.045 61.111 10.83 0.00 35.26 3.24
469 470 1.678970 GGCGCACCAAGGAAGGATT 60.679 57.895 10.83 0.00 35.26 3.01
470 471 1.657751 GGCGCACCAAGGAAGGATTC 61.658 60.000 10.83 0.00 39.41 2.52
485 486 2.937519 GGATTCATCCCTTCCCAAGTC 58.062 52.381 0.00 0.00 41.20 3.01
486 487 2.565841 GATTCATCCCTTCCCAAGTCG 58.434 52.381 0.00 0.00 0.00 4.18
487 488 0.618458 TTCATCCCTTCCCAAGTCGG 59.382 55.000 0.00 0.00 0.00 4.79
488 489 1.452108 CATCCCTTCCCAAGTCGGC 60.452 63.158 0.00 0.00 0.00 5.54
489 490 1.616628 ATCCCTTCCCAAGTCGGCT 60.617 57.895 0.00 0.00 0.00 5.52
490 491 1.915078 ATCCCTTCCCAAGTCGGCTG 61.915 60.000 0.00 0.00 0.00 4.85
491 492 2.747855 CCTTCCCAAGTCGGCTGC 60.748 66.667 0.00 0.00 0.00 5.25
492 493 2.747855 CTTCCCAAGTCGGCTGCC 60.748 66.667 9.11 9.11 0.00 4.85
493 494 4.344865 TTCCCAAGTCGGCTGCCC 62.345 66.667 14.12 0.00 0.00 5.36
496 497 4.351054 CCAAGTCGGCTGCCCCTT 62.351 66.667 14.12 12.49 0.00 3.95
497 498 2.747855 CAAGTCGGCTGCCCCTTC 60.748 66.667 14.12 1.06 0.00 3.46
498 499 4.035102 AAGTCGGCTGCCCCTTCC 62.035 66.667 14.12 0.00 0.00 3.46
502 503 4.366684 CGGCTGCCCCTTCCCTTT 62.367 66.667 14.12 0.00 0.00 3.11
503 504 2.978946 CGGCTGCCCCTTCCCTTTA 61.979 63.158 14.12 0.00 0.00 1.85
504 505 1.379977 GGCTGCCCCTTCCCTTTAC 60.380 63.158 7.66 0.00 0.00 2.01
505 506 1.379977 GCTGCCCCTTCCCTTTACC 60.380 63.158 0.00 0.00 0.00 2.85
506 507 1.864263 GCTGCCCCTTCCCTTTACCT 61.864 60.000 0.00 0.00 0.00 3.08
507 508 0.034089 CTGCCCCTTCCCTTTACCTG 60.034 60.000 0.00 0.00 0.00 4.00
508 509 0.774491 TGCCCCTTCCCTTTACCTGT 60.774 55.000 0.00 0.00 0.00 4.00
509 510 1.292085 GCCCCTTCCCTTTACCTGTA 58.708 55.000 0.00 0.00 0.00 2.74
510 511 1.850998 GCCCCTTCCCTTTACCTGTAT 59.149 52.381 0.00 0.00 0.00 2.29
511 512 2.422945 GCCCCTTCCCTTTACCTGTATG 60.423 54.545 0.00 0.00 0.00 2.39
512 513 2.850568 CCCCTTCCCTTTACCTGTATGT 59.149 50.000 0.00 0.00 0.00 2.29
513 514 3.118000 CCCCTTCCCTTTACCTGTATGTC 60.118 52.174 0.00 0.00 0.00 3.06
514 515 3.521937 CCCTTCCCTTTACCTGTATGTCA 59.478 47.826 0.00 0.00 0.00 3.58
515 516 4.514401 CCTTCCCTTTACCTGTATGTCAC 58.486 47.826 0.00 0.00 0.00 3.67
516 517 4.019681 CCTTCCCTTTACCTGTATGTCACA 60.020 45.833 0.00 0.00 35.30 3.58
517 518 5.339200 CCTTCCCTTTACCTGTATGTCACAT 60.339 44.000 0.00 0.00 36.29 3.21
518 519 5.097742 TCCCTTTACCTGTATGTCACATG 57.902 43.478 0.00 0.00 36.29 3.21
519 520 4.534500 TCCCTTTACCTGTATGTCACATGT 59.466 41.667 0.00 0.00 39.13 3.21
520 521 4.635765 CCCTTTACCTGTATGTCACATGTG 59.364 45.833 20.18 20.18 36.74 3.21
521 522 5.245531 CCTTTACCTGTATGTCACATGTGT 58.754 41.667 24.63 9.13 36.74 3.72
522 523 5.122239 CCTTTACCTGTATGTCACATGTGTG 59.878 44.000 24.63 6.81 46.91 3.82
523 524 3.057969 ACCTGTATGTCACATGTGTGG 57.942 47.619 24.63 16.77 45.65 4.17
537 538 2.226330 TGTGTGGCATGAAGTAACACC 58.774 47.619 0.00 0.00 40.28 4.16
538 539 1.196808 GTGTGGCATGAAGTAACACCG 59.803 52.381 0.00 0.00 36.07 4.94
539 540 0.168128 GTGGCATGAAGTAACACCGC 59.832 55.000 0.00 0.00 0.00 5.68
540 541 0.958382 TGGCATGAAGTAACACCGCC 60.958 55.000 0.00 0.00 40.15 6.13
541 542 1.654023 GGCATGAAGTAACACCGCCC 61.654 60.000 0.00 0.00 36.38 6.13
542 543 0.676782 GCATGAAGTAACACCGCCCT 60.677 55.000 0.00 0.00 0.00 5.19
543 544 1.086696 CATGAAGTAACACCGCCCTG 58.913 55.000 0.00 0.00 0.00 4.45
544 545 0.981183 ATGAAGTAACACCGCCCTGA 59.019 50.000 0.00 0.00 0.00 3.86
545 546 0.034337 TGAAGTAACACCGCCCTGAC 59.966 55.000 0.00 0.00 0.00 3.51
546 547 1.005394 AAGTAACACCGCCCTGACG 60.005 57.895 0.00 0.00 0.00 4.35
547 548 1.751349 AAGTAACACCGCCCTGACGT 61.751 55.000 0.00 0.00 0.00 4.34
548 549 1.301165 GTAACACCGCCCTGACGTT 60.301 57.895 0.00 0.00 0.00 3.99
549 550 0.881600 GTAACACCGCCCTGACGTTT 60.882 55.000 0.00 0.00 0.00 3.60
550 551 0.179051 TAACACCGCCCTGACGTTTT 60.179 50.000 0.00 0.00 0.00 2.43
551 552 1.033202 AACACCGCCCTGACGTTTTT 61.033 50.000 0.00 0.00 0.00 1.94
552 553 0.179051 ACACCGCCCTGACGTTTTTA 60.179 50.000 0.00 0.00 0.00 1.52
553 554 1.161843 CACCGCCCTGACGTTTTTAT 58.838 50.000 0.00 0.00 0.00 1.40
554 555 2.289569 ACACCGCCCTGACGTTTTTATA 60.290 45.455 0.00 0.00 0.00 0.98
555 556 2.743126 CACCGCCCTGACGTTTTTATAA 59.257 45.455 0.00 0.00 0.00 0.98
556 557 2.743664 ACCGCCCTGACGTTTTTATAAC 59.256 45.455 0.00 0.00 0.00 1.89
557 558 3.004862 CCGCCCTGACGTTTTTATAACT 58.995 45.455 0.00 0.00 0.00 2.24
558 559 4.183101 CCGCCCTGACGTTTTTATAACTA 58.817 43.478 0.00 0.00 0.00 2.24
559 560 4.630940 CCGCCCTGACGTTTTTATAACTAA 59.369 41.667 0.00 0.00 0.00 2.24
560 561 5.122082 CCGCCCTGACGTTTTTATAACTAAA 59.878 40.000 0.00 0.00 0.00 1.85
561 562 6.348376 CCGCCCTGACGTTTTTATAACTAAAA 60.348 38.462 0.00 0.00 35.53 1.52
562 563 6.520790 CGCCCTGACGTTTTTATAACTAAAAC 59.479 38.462 0.00 0.00 40.40 2.43
563 564 7.571798 CGCCCTGACGTTTTTATAACTAAAACT 60.572 37.037 8.76 0.00 41.20 2.66
564 565 7.536281 GCCCTGACGTTTTTATAACTAAAACTG 59.464 37.037 8.76 5.98 41.20 3.16
565 566 8.562052 CCCTGACGTTTTTATAACTAAAACTGT 58.438 33.333 8.76 8.18 41.20 3.55
566 567 9.590088 CCTGACGTTTTTATAACTAAAACTGTC 57.410 33.333 17.65 17.65 41.20 3.51
571 572 9.257865 CGTTTTTATAACTAAAACTGTCATCCG 57.742 33.333 8.76 0.00 41.20 4.18
608 609 6.959639 AAAAACTGAAACTTGCCATCTAGA 57.040 33.333 0.00 0.00 0.00 2.43
609 610 7.530426 AAAAACTGAAACTTGCCATCTAGAT 57.470 32.000 0.00 0.00 0.00 1.98
610 611 8.635765 AAAAACTGAAACTTGCCATCTAGATA 57.364 30.769 4.54 0.00 0.00 1.98
611 612 7.856145 AAACTGAAACTTGCCATCTAGATAG 57.144 36.000 4.54 0.00 0.00 2.08
612 613 6.798427 ACTGAAACTTGCCATCTAGATAGA 57.202 37.500 4.54 0.00 36.65 1.98
613 614 7.187824 ACTGAAACTTGCCATCTAGATAGAA 57.812 36.000 4.54 0.00 35.69 2.10
614 615 7.624549 ACTGAAACTTGCCATCTAGATAGAAA 58.375 34.615 4.54 0.00 35.69 2.52
615 616 7.768120 ACTGAAACTTGCCATCTAGATAGAAAG 59.232 37.037 15.25 15.25 35.69 2.62
616 617 7.624549 TGAAACTTGCCATCTAGATAGAAAGT 58.375 34.615 16.41 16.41 33.45 2.66
617 618 8.103305 TGAAACTTGCCATCTAGATAGAAAGTT 58.897 33.333 23.99 23.99 39.47 2.66
618 619 7.856145 AACTTGCCATCTAGATAGAAAGTTG 57.144 36.000 27.07 7.43 37.83 3.16
619 620 5.819901 ACTTGCCATCTAGATAGAAAGTTGC 59.180 40.000 16.41 5.95 35.69 4.17
620 621 4.708177 TGCCATCTAGATAGAAAGTTGCC 58.292 43.478 4.54 0.00 35.69 4.52
621 622 4.164030 TGCCATCTAGATAGAAAGTTGCCA 59.836 41.667 4.54 0.00 35.69 4.92
622 623 5.163163 TGCCATCTAGATAGAAAGTTGCCAT 60.163 40.000 4.54 0.00 35.69 4.40
623 624 5.180868 GCCATCTAGATAGAAAGTTGCCATG 59.819 44.000 4.54 0.00 35.69 3.66
624 625 5.180868 CCATCTAGATAGAAAGTTGCCATGC 59.819 44.000 4.54 0.00 35.69 4.06
625 626 5.620738 TCTAGATAGAAAGTTGCCATGCT 57.379 39.130 0.00 0.00 0.00 3.79
626 627 5.994250 TCTAGATAGAAAGTTGCCATGCTT 58.006 37.500 0.00 0.00 0.00 3.91
627 628 6.051717 TCTAGATAGAAAGTTGCCATGCTTC 58.948 40.000 0.00 0.00 0.00 3.86
628 629 4.592942 AGATAGAAAGTTGCCATGCTTCA 58.407 39.130 0.00 0.00 0.00 3.02
629 630 4.397417 AGATAGAAAGTTGCCATGCTTCAC 59.603 41.667 0.00 0.00 0.00 3.18
630 631 2.309613 AGAAAGTTGCCATGCTTCACA 58.690 42.857 0.00 0.00 0.00 3.58
631 632 2.694628 AGAAAGTTGCCATGCTTCACAA 59.305 40.909 0.00 0.00 0.00 3.33
632 633 3.322828 AGAAAGTTGCCATGCTTCACAAT 59.677 39.130 0.00 0.00 0.00 2.71
633 634 3.756933 AAGTTGCCATGCTTCACAATT 57.243 38.095 0.00 0.00 0.00 2.32
634 635 4.870123 AAGTTGCCATGCTTCACAATTA 57.130 36.364 0.00 0.00 0.00 1.40
635 636 4.870123 AGTTGCCATGCTTCACAATTAA 57.130 36.364 0.00 0.00 0.00 1.40
636 637 4.813027 AGTTGCCATGCTTCACAATTAAG 58.187 39.130 0.00 0.00 0.00 1.85
641 642 3.928375 CCATGCTTCACAATTAAGTTGCC 59.072 43.478 0.00 0.00 41.69 4.52
648 649 3.689161 TCACAATTAAGTTGCCATCCTCG 59.311 43.478 0.00 0.00 41.69 4.63
649 650 3.016736 ACAATTAAGTTGCCATCCTCGG 58.983 45.455 0.00 0.00 41.69 4.63
650 651 2.348411 ATTAAGTTGCCATCCTCGGG 57.652 50.000 0.00 0.00 0.00 5.14
654 655 1.213296 AGTTGCCATCCTCGGGTAAT 58.787 50.000 0.00 0.00 32.57 1.89
665 666 4.497300 TCCTCGGGTAATTAAAGTTGTCG 58.503 43.478 0.00 0.00 0.00 4.35
666 667 4.021192 TCCTCGGGTAATTAAAGTTGTCGT 60.021 41.667 0.00 0.00 0.00 4.34
668 669 5.517770 CCTCGGGTAATTAAAGTTGTCGTAG 59.482 44.000 0.00 0.00 0.00 3.51
693 694 8.406297 AGAAAAATATTAGGACGGAATTGCTTC 58.594 33.333 0.00 0.00 0.00 3.86
703 704 0.109597 GAATTGCTTCCTGCCACACG 60.110 55.000 0.00 0.00 42.00 4.49
716 717 4.686091 CCTGCCACACGTATGATACTTATG 59.314 45.833 0.00 0.00 0.00 1.90
720 721 5.278808 GCCACACGTATGATACTTATGAGGA 60.279 44.000 14.37 0.00 0.00 3.71
850 851 0.178961 GAAAAGGCCTCCAACTGGGT 60.179 55.000 5.23 0.00 38.11 4.51
1135 1148 8.748380 GCTTTTGCTTTTCAGTTTGTCTATAT 57.252 30.769 0.00 0.00 43.35 0.86
1136 1149 8.642020 GCTTTTGCTTTTCAGTTTGTCTATATG 58.358 33.333 0.00 0.00 43.35 1.78
1137 1150 9.683069 CTTTTGCTTTTCAGTTTGTCTATATGT 57.317 29.630 0.00 0.00 0.00 2.29
1138 1151 9.677567 TTTTGCTTTTCAGTTTGTCTATATGTC 57.322 29.630 0.00 0.00 0.00 3.06
1139 1152 7.977789 TGCTTTTCAGTTTGTCTATATGTCA 57.022 32.000 0.00 0.00 0.00 3.58
1140 1153 7.806690 TGCTTTTCAGTTTGTCTATATGTCAC 58.193 34.615 0.00 0.00 0.00 3.67
1141 1154 7.443879 TGCTTTTCAGTTTGTCTATATGTCACA 59.556 33.333 0.00 0.00 0.00 3.58
1142 1155 8.454106 GCTTTTCAGTTTGTCTATATGTCACAT 58.546 33.333 0.00 0.00 0.00 3.21
1143 1156 9.979270 CTTTTCAGTTTGTCTATATGTCACATC 57.021 33.333 0.00 0.00 0.00 3.06
1144 1157 9.725019 TTTTCAGTTTGTCTATATGTCACATCT 57.275 29.630 0.00 0.00 0.00 2.90
1147 1160 9.408648 TCAGTTTGTCTATATGTCACATCTAGA 57.591 33.333 8.48 8.48 0.00 2.43
1148 1161 9.457110 CAGTTTGTCTATATGTCACATCTAGAC 57.543 37.037 25.93 25.93 39.03 2.59
1149 1162 8.634444 AGTTTGTCTATATGTCACATCTAGACC 58.366 37.037 27.98 18.36 38.22 3.85
1150 1163 7.526142 TTGTCTATATGTCACATCTAGACCC 57.474 40.000 27.98 13.84 38.22 4.46
1151 1164 6.853490 TGTCTATATGTCACATCTAGACCCT 58.147 40.000 27.98 0.00 38.22 4.34
1152 1165 7.298374 TGTCTATATGTCACATCTAGACCCTT 58.702 38.462 27.98 0.00 38.22 3.95
1153 1166 7.785028 TGTCTATATGTCACATCTAGACCCTTT 59.215 37.037 27.98 0.00 38.22 3.11
1154 1167 8.085296 GTCTATATGTCACATCTAGACCCTTTG 58.915 40.741 23.73 0.00 34.73 2.77
1155 1168 3.334583 TGTCACATCTAGACCCTTTGC 57.665 47.619 0.00 0.00 35.15 3.68
1156 1169 2.906389 TGTCACATCTAGACCCTTTGCT 59.094 45.455 0.00 0.00 35.15 3.91
1157 1170 3.327757 TGTCACATCTAGACCCTTTGCTT 59.672 43.478 0.00 0.00 35.15 3.91
1158 1171 4.202461 TGTCACATCTAGACCCTTTGCTTT 60.202 41.667 0.00 0.00 35.15 3.51
1159 1172 4.762251 GTCACATCTAGACCCTTTGCTTTT 59.238 41.667 0.00 0.00 0.00 2.27
1160 1173 5.003804 TCACATCTAGACCCTTTGCTTTTC 58.996 41.667 0.00 0.00 0.00 2.29
1166 1179 2.363359 AGACCCTTTGCTTTTCTGCTTG 59.637 45.455 0.00 0.00 0.00 4.01
1169 1182 2.546584 CCCTTTGCTTTTCTGCTTGGTC 60.547 50.000 0.00 0.00 0.00 4.02
1190 1203 0.180171 ATGGTGCCGTATGCTTGCTA 59.820 50.000 0.00 0.00 42.00 3.49
1288 1301 1.520787 GGACGCCGACAAGGTATGG 60.521 63.158 0.00 0.00 43.70 2.74
1305 1318 9.950680 CAAGGTATGGTATAGCTTGTAAATTTG 57.049 33.333 22.86 5.60 43.84 2.32
1331 1344 2.226330 CTATCGGTCAGGAGTCAGGAG 58.774 57.143 0.00 0.00 0.00 3.69
1446 1460 7.630242 TCTGAACTGACTGTTTCTGAATTTT 57.370 32.000 0.00 0.00 39.30 1.82
1519 1533 4.574674 TTAGTTGATGGTTCAGGATGCT 57.425 40.909 0.00 0.00 34.76 3.79
1977 2394 6.648310 ACAATCCAGATTCATACTCGCAATAG 59.352 38.462 0.00 0.00 0.00 1.73
2089 2513 6.810182 GCATGATTCTGTATGCTTTCTTTGTT 59.190 34.615 0.00 0.00 44.70 2.83
2159 2583 2.483877 TGCAAGAAAGGCGTTAGATGTG 59.516 45.455 0.00 0.00 0.00 3.21
2241 2931 8.648097 CCATATACACGCAGACATAAATCTTAC 58.352 37.037 0.00 0.00 0.00 2.34
2245 2935 5.810587 ACACGCAGACATAAATCTTACGATT 59.189 36.000 0.00 0.00 41.53 3.34
2284 2974 1.997669 TGTTGTTTTGGTGGCGTTTC 58.002 45.000 0.00 0.00 0.00 2.78
2309 2999 8.107095 TCTCATTGTAGCCATAAAGGTAGTTTT 58.893 33.333 0.00 0.00 40.61 2.43
2313 3003 8.700439 TTGTAGCCATAAAGGTAGTTTTTCTT 57.300 30.769 0.00 0.00 40.61 2.52
2315 3005 8.573035 TGTAGCCATAAAGGTAGTTTTTCTTTG 58.427 33.333 0.00 0.00 40.61 2.77
2373 3063 1.001815 GTGTGCACACCATGGTAACAC 60.002 52.381 34.94 25.97 45.70 3.32
2405 3095 0.168128 CCTTTCCTTTGTAAGCCGCG 59.832 55.000 0.00 0.00 0.00 6.46
2418 3108 0.460311 AGCCGCGCTACAATACTTCT 59.540 50.000 5.56 0.00 36.99 2.85
2420 3110 1.536284 GCCGCGCTACAATACTTCTCT 60.536 52.381 5.56 0.00 0.00 3.10
2441 3131 3.552132 TCCAATAAGACCAATAGCGCA 57.448 42.857 11.47 0.00 0.00 6.09
2507 3198 4.943705 AGTGGGCAATAACATACTGTGAAG 59.056 41.667 0.00 0.00 0.00 3.02
2508 3199 4.700213 GTGGGCAATAACATACTGTGAAGT 59.300 41.667 0.00 0.00 0.00 3.01
2509 3200 4.699735 TGGGCAATAACATACTGTGAAGTG 59.300 41.667 0.00 0.00 0.00 3.16
2510 3201 4.700213 GGGCAATAACATACTGTGAAGTGT 59.300 41.667 0.00 0.00 0.00 3.55
2511 3202 5.391950 GGGCAATAACATACTGTGAAGTGTG 60.392 44.000 1.61 1.61 37.03 3.82
2512 3203 5.411361 GGCAATAACATACTGTGAAGTGTGA 59.589 40.000 9.25 0.00 35.36 3.58
2513 3204 6.072728 GGCAATAACATACTGTGAAGTGTGAA 60.073 38.462 9.25 0.00 35.36 3.18
2526 3217 5.123344 GTGAAGTGTGAACCAACTAGTTTGT 59.877 40.000 5.07 5.88 32.71 2.83
2689 3380 4.473444 ACCTCACAAAGTTCATCAACCAT 58.527 39.130 0.00 0.00 32.22 3.55
2692 3383 3.890756 TCACAAAGTTCATCAACCATGCT 59.109 39.130 0.00 0.00 32.22 3.79
2695 3386 6.209192 TCACAAAGTTCATCAACCATGCTAAT 59.791 34.615 0.00 0.00 32.22 1.73
2816 3507 1.769098 ATGCTGCTTACTGCGATGCG 61.769 55.000 0.00 0.00 46.63 4.73
2891 3582 9.469097 AGAGAGTATGTTTAGTTCACTCTACAT 57.531 33.333 2.73 10.18 44.48 2.29
2892 3583 9.724839 GAGAGTATGTTTAGTTCACTCTACATC 57.275 37.037 9.11 4.31 44.48 3.06
3020 3715 2.596452 CGATGTCACTTGCGAGTTACT 58.404 47.619 17.34 5.34 32.44 2.24
3035 3730 4.877251 CGAGTTACTACAACTCTCTAGCCT 59.123 45.833 13.55 0.00 43.28 4.58
3057 3752 7.178628 AGCCTGTCTCTCAAAACTGTATAACTA 59.821 37.037 0.00 0.00 0.00 2.24
3075 3770 3.421844 ACTACCAAATCTTGCTTGGGAC 58.578 45.455 6.62 0.00 46.48 4.46
3159 4073 4.292784 GCTCACTGCCTTGGAGAC 57.707 61.111 0.00 0.00 35.15 3.36
3160 4074 1.739562 GCTCACTGCCTTGGAGACG 60.740 63.158 0.00 0.00 35.15 4.18
3161 4075 1.967535 CTCACTGCCTTGGAGACGA 59.032 57.895 0.00 0.00 0.00 4.20
3162 4076 0.389166 CTCACTGCCTTGGAGACGAC 60.389 60.000 0.00 0.00 0.00 4.34
3163 4077 0.827925 TCACTGCCTTGGAGACGACT 60.828 55.000 0.00 0.00 0.00 4.18
3164 4078 0.389166 CACTGCCTTGGAGACGACTC 60.389 60.000 6.33 6.33 41.94 3.36
3166 4080 0.605589 CTGCCTTGGAGACGACTCTT 59.394 55.000 14.36 0.00 42.28 2.85
3167 4081 0.318441 TGCCTTGGAGACGACTCTTG 59.682 55.000 14.36 5.38 42.28 3.02
3168 4082 0.603569 GCCTTGGAGACGACTCTTGA 59.396 55.000 14.36 0.96 42.28 3.02
3173 4102 4.322349 CCTTGGAGACGACTCTTGATTTCT 60.322 45.833 14.36 0.00 42.28 2.52
3210 4139 1.272490 TCCAAGAGCTTGTGGTCGTAG 59.728 52.381 14.42 0.00 44.65 3.51
3286 6842 1.755161 CCGTGAATAGATGACGACGG 58.245 55.000 0.00 0.00 40.29 4.79
3291 6847 2.360801 TGAATAGATGACGACGGCATGA 59.639 45.455 23.47 9.29 0.00 3.07
3292 6848 2.423926 ATAGATGACGACGGCATGAC 57.576 50.000 23.47 7.69 0.00 3.06
3302 6858 3.070576 GGCATGACCAAGGCCACC 61.071 66.667 5.01 0.00 46.92 4.61
3418 9233 2.422276 AGTTCGGTTGCTTTGAATGC 57.578 45.000 0.00 0.00 0.00 3.56
3425 9240 2.472488 GGTTGCTTTGAATGCTTGTTCG 59.528 45.455 4.67 0.00 0.00 3.95
3433 9248 3.585862 TGAATGCTTGTTCGGTCTCTAC 58.414 45.455 0.00 0.00 0.00 2.59
3435 9250 0.606604 TGCTTGTTCGGTCTCTACCC 59.393 55.000 0.00 0.00 43.54 3.69
3436 9251 0.896226 GCTTGTTCGGTCTCTACCCT 59.104 55.000 0.00 0.00 43.54 4.34
3437 9252 2.097825 GCTTGTTCGGTCTCTACCCTA 58.902 52.381 0.00 0.00 43.54 3.53
3438 9253 2.694109 GCTTGTTCGGTCTCTACCCTAT 59.306 50.000 0.00 0.00 43.54 2.57
3446 9262 3.074242 CGGTCTCTACCCTATCCTTACCT 59.926 52.174 0.00 0.00 43.54 3.08
3549 9570 4.497291 TGTATGTGTCTTTATCCCCACC 57.503 45.455 0.00 0.00 0.00 4.61
3593 9616 2.612493 CCCCCGGTTTCCTCCATGT 61.612 63.158 0.00 0.00 0.00 3.21
3594 9617 1.382629 CCCCGGTTTCCTCCATGTT 59.617 57.895 0.00 0.00 0.00 2.71
3609 9942 5.301805 CCTCCATGTTCAACTACCTTGTTTT 59.698 40.000 0.00 0.00 0.00 2.43
3654 9987 6.788684 TTTTACTTGAATGTAGCGTTGCTA 57.211 33.333 0.00 0.00 40.44 3.49
3747 10081 4.448060 GGAATTAACGAGCCTATGTAGTGC 59.552 45.833 0.00 0.00 0.00 4.40
3768 10102 7.698628 AGTGCTGAGAGAAGTAAAAAGTTTTC 58.301 34.615 0.32 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.050769 CGAATGATATCCGAGTGAACCTTTG 60.051 44.000 0.00 0.00 0.00 2.77
1 2 5.050490 CGAATGATATCCGAGTGAACCTTT 58.950 41.667 0.00 0.00 0.00 3.11
2 3 4.099573 ACGAATGATATCCGAGTGAACCTT 59.900 41.667 6.83 0.00 0.00 3.50
3 4 3.637229 ACGAATGATATCCGAGTGAACCT 59.363 43.478 6.83 0.00 0.00 3.50
4 5 3.978687 ACGAATGATATCCGAGTGAACC 58.021 45.455 6.83 0.00 0.00 3.62
5 6 6.379386 TCATACGAATGATATCCGAGTGAAC 58.621 40.000 6.83 0.00 37.20 3.18
6 7 6.206829 ACTCATACGAATGATATCCGAGTGAA 59.793 38.462 6.83 0.00 41.29 3.18
7 8 5.705905 ACTCATACGAATGATATCCGAGTGA 59.294 40.000 6.83 8.45 41.29 3.41
8 9 5.797434 CACTCATACGAATGATATCCGAGTG 59.203 44.000 6.83 0.00 41.29 3.51
9 10 5.473846 ACACTCATACGAATGATATCCGAGT 59.526 40.000 6.83 0.00 41.29 4.18
10 11 5.944013 ACACTCATACGAATGATATCCGAG 58.056 41.667 6.83 0.00 41.29 4.63
11 12 5.959618 ACACTCATACGAATGATATCCGA 57.040 39.130 6.83 0.00 41.29 4.55
23 24 1.311859 TAGGCCCGTACACTCATACG 58.688 55.000 0.00 0.00 45.99 3.06
24 25 4.142227 CCATATAGGCCCGTACACTCATAC 60.142 50.000 0.00 0.00 0.00 2.39
25 26 4.021229 CCATATAGGCCCGTACACTCATA 58.979 47.826 0.00 0.00 0.00 2.15
26 27 2.832129 CCATATAGGCCCGTACACTCAT 59.168 50.000 0.00 0.00 0.00 2.90
27 28 2.158430 TCCATATAGGCCCGTACACTCA 60.158 50.000 0.00 0.00 37.29 3.41
28 29 2.522185 TCCATATAGGCCCGTACACTC 58.478 52.381 0.00 0.00 37.29 3.51
29 30 2.688902 TCCATATAGGCCCGTACACT 57.311 50.000 0.00 0.00 37.29 3.55
30 31 2.565834 ACATCCATATAGGCCCGTACAC 59.434 50.000 0.00 0.00 37.29 2.90
31 32 2.829720 GACATCCATATAGGCCCGTACA 59.170 50.000 0.00 0.00 37.29 2.90
32 33 2.167900 GGACATCCATATAGGCCCGTAC 59.832 54.545 0.00 0.00 37.29 3.67
33 34 2.225420 TGGACATCCATATAGGCCCGTA 60.225 50.000 0.00 0.00 42.01 4.02
34 35 1.276622 GGACATCCATATAGGCCCGT 58.723 55.000 0.00 0.00 37.29 5.28
35 36 1.275666 TGGACATCCATATAGGCCCG 58.724 55.000 0.00 0.00 42.01 6.13
36 37 2.912956 TCTTGGACATCCATATAGGCCC 59.087 50.000 0.00 0.00 46.97 5.80
37 38 4.851639 ATCTTGGACATCCATATAGGCC 57.148 45.455 0.34 0.00 46.97 5.19
38 39 5.189180 GGAATCTTGGACATCCATATAGGC 58.811 45.833 0.34 0.00 46.97 3.93
39 40 5.423015 CGGAATCTTGGACATCCATATAGG 58.577 45.833 0.34 0.00 46.97 2.57
40 41 4.872691 GCGGAATCTTGGACATCCATATAG 59.127 45.833 0.34 0.00 46.97 1.31
41 42 4.532126 AGCGGAATCTTGGACATCCATATA 59.468 41.667 0.34 0.00 46.97 0.86
42 43 3.328931 AGCGGAATCTTGGACATCCATAT 59.671 43.478 0.34 0.00 46.97 1.78
43 44 2.705658 AGCGGAATCTTGGACATCCATA 59.294 45.455 0.34 0.00 46.97 2.74
44 45 1.492176 AGCGGAATCTTGGACATCCAT 59.508 47.619 0.34 0.00 46.97 3.41
45 46 0.911769 AGCGGAATCTTGGACATCCA 59.088 50.000 0.00 0.00 45.94 3.41
46 47 2.910688 TAGCGGAATCTTGGACATCC 57.089 50.000 0.00 0.00 0.00 3.51
47 48 7.440523 AATTATTAGCGGAATCTTGGACATC 57.559 36.000 0.00 0.00 0.00 3.06
48 49 9.520515 AATAATTATTAGCGGAATCTTGGACAT 57.479 29.630 8.99 0.00 0.00 3.06
49 50 8.783093 CAATAATTATTAGCGGAATCTTGGACA 58.217 33.333 10.34 0.00 0.00 4.02
50 51 8.999431 TCAATAATTATTAGCGGAATCTTGGAC 58.001 33.333 10.34 0.00 0.00 4.02
51 52 9.567776 TTCAATAATTATTAGCGGAATCTTGGA 57.432 29.630 10.34 0.00 0.00 3.53
52 53 9.612620 GTTCAATAATTATTAGCGGAATCTTGG 57.387 33.333 10.34 0.00 0.00 3.61
53 54 9.318041 CGTTCAATAATTATTAGCGGAATCTTG 57.682 33.333 10.34 0.00 0.00 3.02
54 55 9.268268 TCGTTCAATAATTATTAGCGGAATCTT 57.732 29.630 10.34 0.00 0.00 2.40
55 56 8.827177 TCGTTCAATAATTATTAGCGGAATCT 57.173 30.769 10.34 0.00 0.00 2.40
56 57 9.872757 TTTCGTTCAATAATTATTAGCGGAATC 57.127 29.630 10.34 5.09 0.00 2.52
57 58 9.878599 CTTTCGTTCAATAATTATTAGCGGAAT 57.121 29.630 10.34 0.00 0.00 3.01
58 59 8.885722 ACTTTCGTTCAATAATTATTAGCGGAA 58.114 29.630 10.34 13.41 0.00 4.30
59 60 8.428186 ACTTTCGTTCAATAATTATTAGCGGA 57.572 30.769 10.34 7.53 0.00 5.54
72 73 9.528018 ACATGAACAAAAATACTTTCGTTCAAT 57.472 25.926 7.20 0.00 42.78 2.57
73 74 8.918961 ACATGAACAAAAATACTTTCGTTCAA 57.081 26.923 7.20 0.00 42.78 2.69
74 75 8.402472 AGACATGAACAAAAATACTTTCGTTCA 58.598 29.630 5.71 5.71 43.23 3.18
75 76 8.782533 AGACATGAACAAAAATACTTTCGTTC 57.217 30.769 0.00 0.00 36.38 3.95
90 91 9.685276 AGGTTCAATGAAATATAGACATGAACA 57.315 29.630 17.84 0.00 35.90 3.18
96 97 9.613428 CCTTGTAGGTTCAATGAAATATAGACA 57.387 33.333 0.00 0.00 0.00 3.41
114 115 2.736144 TAAGCGTGTGACCTTGTAGG 57.264 50.000 0.00 0.00 42.49 3.18
115 116 2.993899 CCTTAAGCGTGTGACCTTGTAG 59.006 50.000 0.00 0.00 0.00 2.74
116 117 2.868839 GCCTTAAGCGTGTGACCTTGTA 60.869 50.000 0.00 0.00 0.00 2.41
117 118 1.878953 CCTTAAGCGTGTGACCTTGT 58.121 50.000 0.00 0.00 0.00 3.16
118 119 0.517316 GCCTTAAGCGTGTGACCTTG 59.483 55.000 0.00 0.00 0.00 3.61
119 120 2.928416 GCCTTAAGCGTGTGACCTT 58.072 52.632 0.00 0.00 0.00 3.50
120 121 4.695560 GCCTTAAGCGTGTGACCT 57.304 55.556 0.00 0.00 0.00 3.85
135 136 5.859205 AAAACTCAAGGGATCATAATGCC 57.141 39.130 0.00 0.00 43.49 4.40
136 137 8.734386 CCTATAAAACTCAAGGGATCATAATGC 58.266 37.037 0.00 0.00 0.00 3.56
139 140 9.225682 ACTCCTATAAAACTCAAGGGATCATAA 57.774 33.333 0.00 0.00 0.00 1.90
140 141 8.798975 ACTCCTATAAAACTCAAGGGATCATA 57.201 34.615 0.00 0.00 0.00 2.15
141 142 7.698163 ACTCCTATAAAACTCAAGGGATCAT 57.302 36.000 0.00 0.00 0.00 2.45
142 143 7.510675 AACTCCTATAAAACTCAAGGGATCA 57.489 36.000 0.00 0.00 0.00 2.92
143 144 8.151596 CCTAACTCCTATAAAACTCAAGGGATC 58.848 40.741 0.00 0.00 0.00 3.36
144 145 7.849904 TCCTAACTCCTATAAAACTCAAGGGAT 59.150 37.037 0.00 0.00 0.00 3.85
145 146 7.194050 TCCTAACTCCTATAAAACTCAAGGGA 58.806 38.462 0.00 0.00 0.00 4.20
146 147 7.433537 TCCTAACTCCTATAAAACTCAAGGG 57.566 40.000 0.00 0.00 0.00 3.95
209 210 9.430623 GCTTCTAGTTTCTCTCAAAACTATTCT 57.569 33.333 9.06 0.00 45.71 2.40
210 211 8.376942 CGCTTCTAGTTTCTCTCAAAACTATTC 58.623 37.037 9.06 1.11 45.71 1.75
211 212 7.873505 ACGCTTCTAGTTTCTCTCAAAACTATT 59.126 33.333 9.06 0.00 45.71 1.73
212 213 7.379750 ACGCTTCTAGTTTCTCTCAAAACTAT 58.620 34.615 9.06 0.00 45.71 2.12
213 214 6.746120 ACGCTTCTAGTTTCTCTCAAAACTA 58.254 36.000 8.47 8.47 45.31 2.24
215 216 5.908916 ACGCTTCTAGTTTCTCTCAAAAC 57.091 39.130 0.00 0.00 39.03 2.43
216 217 6.920569 AAACGCTTCTAGTTTCTCTCAAAA 57.079 33.333 0.00 0.00 37.23 2.44
225 226 5.288952 GCTAATCTCGAAACGCTTCTAGTTT 59.711 40.000 0.69 1.99 43.60 2.66
226 227 4.799428 GCTAATCTCGAAACGCTTCTAGTT 59.201 41.667 0.69 0.00 0.00 2.24
227 228 4.352887 GCTAATCTCGAAACGCTTCTAGT 58.647 43.478 0.69 0.00 0.00 2.57
228 229 3.419270 CGCTAATCTCGAAACGCTTCTAG 59.581 47.826 0.00 0.00 0.00 2.43
229 230 3.360533 CGCTAATCTCGAAACGCTTCTA 58.639 45.455 0.00 0.00 0.00 2.10
230 231 2.186076 CGCTAATCTCGAAACGCTTCT 58.814 47.619 0.00 0.00 0.00 2.85
231 232 1.255600 CCGCTAATCTCGAAACGCTTC 59.744 52.381 0.00 0.00 0.00 3.86
232 233 1.135199 TCCGCTAATCTCGAAACGCTT 60.135 47.619 0.00 0.00 0.00 4.68
233 234 0.454600 TCCGCTAATCTCGAAACGCT 59.545 50.000 0.00 0.00 0.00 5.07
234 235 1.255600 CTTCCGCTAATCTCGAAACGC 59.744 52.381 0.00 0.00 0.00 4.84
235 236 2.784380 CTCTTCCGCTAATCTCGAAACG 59.216 50.000 0.00 0.00 0.00 3.60
236 237 3.771798 ACTCTTCCGCTAATCTCGAAAC 58.228 45.455 0.00 0.00 0.00 2.78
237 238 4.451629 AACTCTTCCGCTAATCTCGAAA 57.548 40.909 0.00 0.00 0.00 3.46
238 239 4.421948 GAAACTCTTCCGCTAATCTCGAA 58.578 43.478 0.00 0.00 0.00 3.71
239 240 3.487042 CGAAACTCTTCCGCTAATCTCGA 60.487 47.826 0.00 0.00 0.00 4.04
240 241 2.784380 CGAAACTCTTCCGCTAATCTCG 59.216 50.000 0.00 0.00 0.00 4.04
241 242 4.030134 TCGAAACTCTTCCGCTAATCTC 57.970 45.455 0.00 0.00 0.00 2.75
242 243 4.158025 TCTTCGAAACTCTTCCGCTAATCT 59.842 41.667 0.00 0.00 0.00 2.40
243 244 4.421948 TCTTCGAAACTCTTCCGCTAATC 58.578 43.478 0.00 0.00 0.00 1.75
244 245 4.451629 TCTTCGAAACTCTTCCGCTAAT 57.548 40.909 0.00 0.00 0.00 1.73
245 246 3.928727 TCTTCGAAACTCTTCCGCTAA 57.071 42.857 0.00 0.00 0.00 3.09
246 247 3.928727 TTCTTCGAAACTCTTCCGCTA 57.071 42.857 0.00 0.00 0.00 4.26
247 248 2.814280 TTCTTCGAAACTCTTCCGCT 57.186 45.000 0.00 0.00 0.00 5.52
248 249 3.000423 GCTATTCTTCGAAACTCTTCCGC 60.000 47.826 0.00 0.00 0.00 5.54
249 250 3.240861 CGCTATTCTTCGAAACTCTTCCG 59.759 47.826 0.00 0.00 0.00 4.30
250 251 4.421948 TCGCTATTCTTCGAAACTCTTCC 58.578 43.478 0.00 0.00 0.00 3.46
251 252 5.096849 ACTCGCTATTCTTCGAAACTCTTC 58.903 41.667 0.00 0.00 34.07 2.87
252 253 5.061920 ACTCGCTATTCTTCGAAACTCTT 57.938 39.130 0.00 0.00 34.07 2.85
253 254 4.705337 ACTCGCTATTCTTCGAAACTCT 57.295 40.909 0.00 0.00 34.07 3.24
254 255 7.856894 AGTATTACTCGCTATTCTTCGAAACTC 59.143 37.037 0.00 0.00 34.07 3.01
255 256 7.705214 AGTATTACTCGCTATTCTTCGAAACT 58.295 34.615 0.00 0.00 34.07 2.66
256 257 7.911362 AGTATTACTCGCTATTCTTCGAAAC 57.089 36.000 0.00 0.00 34.07 2.78
290 291 4.492494 TTAGGTCCCCGGAAACTATTTC 57.508 45.455 0.73 0.00 38.94 2.17
291 292 6.775234 ATATTAGGTCCCCGGAAACTATTT 57.225 37.500 0.73 0.00 0.00 1.40
292 293 7.876978 TTATATTAGGTCCCCGGAAACTATT 57.123 36.000 0.73 2.32 0.00 1.73
293 294 7.876978 TTTATATTAGGTCCCCGGAAACTAT 57.123 36.000 0.73 0.00 0.00 2.12
294 295 7.876978 ATTTATATTAGGTCCCCGGAAACTA 57.123 36.000 0.73 0.00 0.00 2.24
295 296 6.775234 ATTTATATTAGGTCCCCGGAAACT 57.225 37.500 0.73 0.18 0.00 2.66
298 299 9.787334 TCTATTATTTATATTAGGTCCCCGGAA 57.213 33.333 0.73 0.00 0.00 4.30
299 300 9.430399 CTCTATTATTTATATTAGGTCCCCGGA 57.570 37.037 0.73 0.00 0.00 5.14
300 301 8.648693 CCTCTATTATTTATATTAGGTCCCCGG 58.351 40.741 0.00 0.00 0.00 5.73
301 302 8.648693 CCCTCTATTATTTATATTAGGTCCCCG 58.351 40.741 0.00 0.00 0.00 5.73
302 303 8.438373 GCCCTCTATTATTTATATTAGGTCCCC 58.562 40.741 0.00 0.00 0.00 4.81
303 304 9.226879 AGCCCTCTATTATTTATATTAGGTCCC 57.773 37.037 0.00 0.00 0.00 4.46
306 307 9.799223 TGGAGCCCTCTATTATTTATATTAGGT 57.201 33.333 0.00 0.00 0.00 3.08
315 316 9.755122 GGTAAATATTGGAGCCCTCTATTATTT 57.245 33.333 17.59 17.59 38.68 1.40
316 317 8.900802 TGGTAAATATTGGAGCCCTCTATTATT 58.099 33.333 0.00 0.33 32.09 1.40
317 318 8.463055 TGGTAAATATTGGAGCCCTCTATTAT 57.537 34.615 0.00 0.00 0.00 1.28
318 319 7.881912 TGGTAAATATTGGAGCCCTCTATTA 57.118 36.000 0.00 0.00 0.00 0.98
319 320 6.780198 TGGTAAATATTGGAGCCCTCTATT 57.220 37.500 0.00 0.00 0.00 1.73
320 321 6.562608 TCTTGGTAAATATTGGAGCCCTCTAT 59.437 38.462 0.00 0.00 0.00 1.98
321 322 5.908831 TCTTGGTAAATATTGGAGCCCTCTA 59.091 40.000 0.00 0.00 0.00 2.43
322 323 4.726825 TCTTGGTAAATATTGGAGCCCTCT 59.273 41.667 0.00 0.00 0.00 3.69
323 324 5.048846 TCTTGGTAAATATTGGAGCCCTC 57.951 43.478 0.00 0.00 0.00 4.30
324 325 4.141158 CCTCTTGGTAAATATTGGAGCCCT 60.141 45.833 0.00 0.00 0.00 5.19
325 326 4.145052 CCTCTTGGTAAATATTGGAGCCC 58.855 47.826 0.00 0.00 0.00 5.19
326 327 4.793201 ACCTCTTGGTAAATATTGGAGCC 58.207 43.478 0.00 0.00 46.43 4.70
343 344 8.336987 GCCCCTAAATAAATATTATGGACCTCT 58.663 37.037 0.00 0.00 0.00 3.69
344 345 8.336987 AGCCCCTAAATAAATATTATGGACCTC 58.663 37.037 0.00 0.00 0.00 3.85
345 346 8.244665 AGCCCCTAAATAAATATTATGGACCT 57.755 34.615 0.00 0.00 0.00 3.85
346 347 8.895141 AAGCCCCTAAATAAATATTATGGACC 57.105 34.615 0.00 0.00 0.00 4.46
350 351 9.860898 GCTCAAAGCCCCTAAATAAATATTATG 57.139 33.333 0.00 0.00 34.48 1.90
351 352 9.828691 AGCTCAAAGCCCCTAAATAAATATTAT 57.171 29.630 0.00 0.00 43.77 1.28
353 354 9.654919 TTAGCTCAAAGCCCCTAAATAAATATT 57.345 29.630 0.00 0.00 43.77 1.28
354 355 9.828691 ATTAGCTCAAAGCCCCTAAATAAATAT 57.171 29.630 0.00 0.00 43.77 1.28
356 357 9.301897 CTATTAGCTCAAAGCCCCTAAATAAAT 57.698 33.333 0.00 0.00 43.77 1.40
357 358 8.499406 TCTATTAGCTCAAAGCCCCTAAATAAA 58.501 33.333 0.00 0.00 43.77 1.40
358 359 8.041143 TCTATTAGCTCAAAGCCCCTAAATAA 57.959 34.615 0.00 0.00 43.77 1.40
359 360 7.626999 TCTATTAGCTCAAAGCCCCTAAATA 57.373 36.000 0.00 0.00 43.77 1.40
360 361 6.515512 TCTATTAGCTCAAAGCCCCTAAAT 57.484 37.500 0.00 0.00 43.77 1.40
361 362 5.968676 TCTATTAGCTCAAAGCCCCTAAA 57.031 39.130 0.00 0.00 43.77 1.85
362 363 5.968676 TTCTATTAGCTCAAAGCCCCTAA 57.031 39.130 0.00 0.00 43.77 2.69
363 364 5.221925 CCATTCTATTAGCTCAAAGCCCCTA 60.222 44.000 0.00 0.00 43.77 3.53
364 365 4.446889 CCATTCTATTAGCTCAAAGCCCCT 60.447 45.833 0.00 0.00 43.77 4.79
365 366 3.823304 CCATTCTATTAGCTCAAAGCCCC 59.177 47.826 0.00 0.00 43.77 5.80
366 367 3.254411 GCCATTCTATTAGCTCAAAGCCC 59.746 47.826 0.00 0.00 43.77 5.19
367 368 4.140536 AGCCATTCTATTAGCTCAAAGCC 58.859 43.478 0.00 0.00 43.77 4.35
368 369 6.867662 TTAGCCATTCTATTAGCTCAAAGC 57.132 37.500 0.00 0.00 42.84 3.51
369 370 7.521261 GCCTTTAGCCATTCTATTAGCTCAAAG 60.521 40.741 0.00 0.00 36.79 2.77
370 371 6.263168 GCCTTTAGCCATTCTATTAGCTCAAA 59.737 38.462 0.00 0.00 36.79 2.69
371 372 5.765182 GCCTTTAGCCATTCTATTAGCTCAA 59.235 40.000 0.00 0.00 36.79 3.02
372 373 5.308825 GCCTTTAGCCATTCTATTAGCTCA 58.691 41.667 0.00 0.00 36.79 4.26
373 374 5.871465 GCCTTTAGCCATTCTATTAGCTC 57.129 43.478 0.00 0.00 36.79 4.09
387 388 1.435256 TCCCCTATGAGGCCTTTAGC 58.565 55.000 6.77 0.00 42.60 3.09
388 389 4.079730 ACTTTTCCCCTATGAGGCCTTTAG 60.080 45.833 6.77 11.65 32.73 1.85
389 390 3.856206 ACTTTTCCCCTATGAGGCCTTTA 59.144 43.478 6.77 0.00 32.73 1.85
390 391 2.654896 ACTTTTCCCCTATGAGGCCTTT 59.345 45.455 6.77 0.00 32.73 3.11
391 392 2.288525 ACTTTTCCCCTATGAGGCCTT 58.711 47.619 6.77 0.00 32.73 4.35
392 393 1.987080 ACTTTTCCCCTATGAGGCCT 58.013 50.000 3.86 3.86 32.73 5.19
393 394 2.025321 TCAACTTTTCCCCTATGAGGCC 60.025 50.000 0.00 0.00 32.73 5.19
394 395 3.366052 TCAACTTTTCCCCTATGAGGC 57.634 47.619 0.00 0.00 32.73 4.70
395 396 4.210331 CCATCAACTTTTCCCCTATGAGG 58.790 47.826 0.00 0.00 34.30 3.86
396 397 4.210331 CCCATCAACTTTTCCCCTATGAG 58.790 47.826 0.00 0.00 0.00 2.90
397 398 3.627237 GCCCATCAACTTTTCCCCTATGA 60.627 47.826 0.00 0.00 0.00 2.15
398 399 2.695147 GCCCATCAACTTTTCCCCTATG 59.305 50.000 0.00 0.00 0.00 2.23
399 400 2.359249 GGCCCATCAACTTTTCCCCTAT 60.359 50.000 0.00 0.00 0.00 2.57
400 401 1.006639 GGCCCATCAACTTTTCCCCTA 59.993 52.381 0.00 0.00 0.00 3.53
401 402 0.252239 GGCCCATCAACTTTTCCCCT 60.252 55.000 0.00 0.00 0.00 4.79
402 403 0.252239 AGGCCCATCAACTTTTCCCC 60.252 55.000 0.00 0.00 0.00 4.81
403 404 2.525105 TAGGCCCATCAACTTTTCCC 57.475 50.000 0.00 0.00 0.00 3.97
404 405 3.132824 CCAATAGGCCCATCAACTTTTCC 59.867 47.826 0.00 0.00 0.00 3.13
405 406 3.132824 CCCAATAGGCCCATCAACTTTTC 59.867 47.826 0.00 0.00 0.00 2.29
406 407 3.106827 CCCAATAGGCCCATCAACTTTT 58.893 45.455 0.00 0.00 0.00 2.27
407 408 2.750814 CCCAATAGGCCCATCAACTTT 58.249 47.619 0.00 0.00 0.00 2.66
408 409 2.459555 CCCAATAGGCCCATCAACTT 57.540 50.000 0.00 0.00 0.00 2.66
419 420 1.355720 CCCCTTATCAGGCCCAATAGG 59.644 57.143 0.00 0.00 39.20 2.57
420 421 2.065799 ACCCCTTATCAGGCCCAATAG 58.934 52.381 0.00 0.00 39.20 1.73
421 422 1.780309 CACCCCTTATCAGGCCCAATA 59.220 52.381 0.00 0.00 39.20 1.90
422 423 0.557729 CACCCCTTATCAGGCCCAAT 59.442 55.000 0.00 0.00 39.20 3.16
423 424 1.580066 CCACCCCTTATCAGGCCCAA 61.580 60.000 0.00 0.00 39.20 4.12
424 425 2.006415 CCACCCCTTATCAGGCCCA 61.006 63.158 0.00 0.00 39.20 5.36
425 426 2.927056 CCACCCCTTATCAGGCCC 59.073 66.667 0.00 0.00 39.20 5.80
426 427 2.195956 GCCACCCCTTATCAGGCC 59.804 66.667 0.00 0.00 39.20 5.19
427 428 2.203209 CGCCACCCCTTATCAGGC 60.203 66.667 0.00 0.00 39.20 4.85
428 429 2.203209 GCGCCACCCCTTATCAGG 60.203 66.667 0.00 0.00 40.45 3.86
429 430 2.203209 GGCGCCACCCCTTATCAG 60.203 66.667 24.80 0.00 0.00 2.90
450 451 2.424842 AATCCTTCCTTGGTGCGCCA 62.425 55.000 16.89 16.89 44.38 5.69
451 452 1.657751 GAATCCTTCCTTGGTGCGCC 61.658 60.000 10.11 10.11 0.00 6.53
452 453 0.960364 TGAATCCTTCCTTGGTGCGC 60.960 55.000 0.00 0.00 0.00 6.09
453 454 1.672881 GATGAATCCTTCCTTGGTGCG 59.327 52.381 0.00 0.00 0.00 5.34
454 455 2.027385 GGATGAATCCTTCCTTGGTGC 58.973 52.381 1.86 0.00 43.73 5.01
455 456 2.243221 AGGGATGAATCCTTCCTTGGTG 59.757 50.000 9.18 0.00 46.35 4.17
456 457 2.577970 AGGGATGAATCCTTCCTTGGT 58.422 47.619 9.18 0.00 46.35 3.67
457 458 3.677156 AAGGGATGAATCCTTCCTTGG 57.323 47.619 9.18 0.00 46.35 3.61
463 464 2.929043 ACTTGGGAAGGGATGAATCCTT 59.071 45.455 9.18 0.00 46.35 3.36
464 465 2.511637 GACTTGGGAAGGGATGAATCCT 59.488 50.000 9.18 0.00 46.35 3.24
465 466 2.746472 CGACTTGGGAAGGGATGAATCC 60.746 54.545 0.26 0.26 46.41 3.01
466 467 2.565841 CGACTTGGGAAGGGATGAATC 58.434 52.381 0.00 0.00 0.00 2.52
467 468 1.212935 CCGACTTGGGAAGGGATGAAT 59.787 52.381 0.00 0.00 0.00 2.57
468 469 0.618458 CCGACTTGGGAAGGGATGAA 59.382 55.000 0.00 0.00 0.00 2.57
469 470 1.910580 GCCGACTTGGGAAGGGATGA 61.911 60.000 0.00 0.00 38.63 2.92
470 471 1.452108 GCCGACTTGGGAAGGGATG 60.452 63.158 0.00 0.00 38.63 3.51
471 472 1.616628 AGCCGACTTGGGAAGGGAT 60.617 57.895 0.00 0.00 38.63 3.85
472 473 2.203938 AGCCGACTTGGGAAGGGA 60.204 61.111 0.00 0.00 38.63 4.20
473 474 2.045926 CAGCCGACTTGGGAAGGG 60.046 66.667 0.00 0.00 38.63 3.95
474 475 2.747855 GCAGCCGACTTGGGAAGG 60.748 66.667 0.00 0.00 38.63 3.46
475 476 2.747855 GGCAGCCGACTTGGGAAG 60.748 66.667 0.00 0.00 38.63 3.46
476 477 4.344865 GGGCAGCCGACTTGGGAA 62.345 66.667 5.00 0.00 38.63 3.97
479 480 4.351054 AAGGGGCAGCCGACTTGG 62.351 66.667 16.86 0.00 42.50 3.61
480 481 2.747855 GAAGGGGCAGCCGACTTG 60.748 66.667 21.19 0.00 0.00 3.16
481 482 4.035102 GGAAGGGGCAGCCGACTT 62.035 66.667 17.41 17.41 0.00 3.01
485 486 2.978946 TAAAGGGAAGGGGCAGCCG 61.979 63.158 5.00 0.00 0.00 5.52
486 487 1.379977 GTAAAGGGAAGGGGCAGCC 60.380 63.158 1.26 1.26 0.00 4.85
487 488 1.379977 GGTAAAGGGAAGGGGCAGC 60.380 63.158 0.00 0.00 0.00 5.25
488 489 0.034089 CAGGTAAAGGGAAGGGGCAG 60.034 60.000 0.00 0.00 0.00 4.85
489 490 0.774491 ACAGGTAAAGGGAAGGGGCA 60.774 55.000 0.00 0.00 0.00 5.36
490 491 1.292085 TACAGGTAAAGGGAAGGGGC 58.708 55.000 0.00 0.00 0.00 5.80
491 492 2.850568 ACATACAGGTAAAGGGAAGGGG 59.149 50.000 0.00 0.00 0.00 4.79
492 493 3.521937 TGACATACAGGTAAAGGGAAGGG 59.478 47.826 0.00 0.00 0.00 3.95
493 494 4.019681 TGTGACATACAGGTAAAGGGAAGG 60.020 45.833 0.00 0.00 33.42 3.46
494 495 5.160607 TGTGACATACAGGTAAAGGGAAG 57.839 43.478 0.00 0.00 33.42 3.46
495 496 5.496556 CATGTGACATACAGGTAAAGGGAA 58.503 41.667 0.00 0.00 43.80 3.97
496 497 5.097742 CATGTGACATACAGGTAAAGGGA 57.902 43.478 0.00 0.00 43.80 4.20
504 505 4.182091 ATGCCACACATGTGACATACAGG 61.182 47.826 31.94 19.29 45.18 4.00
505 506 3.011818 ATGCCACACATGTGACATACAG 58.988 45.455 31.94 12.25 45.18 2.74
506 507 2.748532 CATGCCACACATGTGACATACA 59.251 45.455 31.94 20.15 45.24 2.29
507 508 3.409851 CATGCCACACATGTGACATAC 57.590 47.619 31.94 15.63 45.24 2.39
516 517 2.819608 GGTGTTACTTCATGCCACACAT 59.180 45.455 11.99 0.00 39.65 3.21
517 518 2.226330 GGTGTTACTTCATGCCACACA 58.774 47.619 11.99 0.00 39.65 3.72
518 519 1.196808 CGGTGTTACTTCATGCCACAC 59.803 52.381 0.00 0.00 37.59 3.82
519 520 1.518325 CGGTGTTACTTCATGCCACA 58.482 50.000 0.00 0.00 0.00 4.17
520 521 0.168128 GCGGTGTTACTTCATGCCAC 59.832 55.000 0.00 0.00 0.00 5.01
521 522 0.958382 GGCGGTGTTACTTCATGCCA 60.958 55.000 0.00 0.00 39.66 4.92
522 523 1.654023 GGGCGGTGTTACTTCATGCC 61.654 60.000 0.00 0.00 39.38 4.40
523 524 0.676782 AGGGCGGTGTTACTTCATGC 60.677 55.000 0.00 0.00 0.00 4.06
524 525 1.086696 CAGGGCGGTGTTACTTCATG 58.913 55.000 0.00 0.00 0.00 3.07
525 526 0.981183 TCAGGGCGGTGTTACTTCAT 59.019 50.000 0.00 0.00 0.00 2.57
526 527 0.034337 GTCAGGGCGGTGTTACTTCA 59.966 55.000 0.00 0.00 0.00 3.02
527 528 1.012486 CGTCAGGGCGGTGTTACTTC 61.012 60.000 0.00 0.00 0.00 3.01
528 529 1.005394 CGTCAGGGCGGTGTTACTT 60.005 57.895 0.00 0.00 0.00 2.24
529 530 1.751349 AACGTCAGGGCGGTGTTACT 61.751 55.000 0.00 0.00 35.98 2.24
530 531 0.881600 AAACGTCAGGGCGGTGTTAC 60.882 55.000 0.00 0.00 35.98 2.50
531 532 0.179051 AAAACGTCAGGGCGGTGTTA 60.179 50.000 0.00 0.00 35.98 2.41
532 533 1.033202 AAAAACGTCAGGGCGGTGTT 61.033 50.000 0.00 0.00 35.98 3.32
533 534 0.179051 TAAAAACGTCAGGGCGGTGT 60.179 50.000 0.00 0.00 35.98 4.16
534 535 1.161843 ATAAAAACGTCAGGGCGGTG 58.838 50.000 0.00 0.00 35.98 4.94
535 536 2.743664 GTTATAAAAACGTCAGGGCGGT 59.256 45.455 0.00 0.00 35.98 5.68
536 537 3.004862 AGTTATAAAAACGTCAGGGCGG 58.995 45.455 0.00 0.00 35.98 6.13
537 538 5.783100 TTAGTTATAAAAACGTCAGGGCG 57.217 39.130 0.00 0.00 37.94 6.13
538 539 7.536281 CAGTTTTAGTTATAAAAACGTCAGGGC 59.464 37.037 0.00 0.00 46.53 5.19
539 540 8.562052 ACAGTTTTAGTTATAAAAACGTCAGGG 58.438 33.333 0.00 0.00 46.53 4.45
540 541 9.590088 GACAGTTTTAGTTATAAAAACGTCAGG 57.410 33.333 19.34 8.54 46.53 3.86
545 546 9.257865 CGGATGACAGTTTTAGTTATAAAAACG 57.742 33.333 5.95 4.60 46.53 3.60
585 586 6.959639 TCTAGATGGCAAGTTTCAGTTTTT 57.040 33.333 0.00 0.00 0.00 1.94
586 587 8.103305 TCTATCTAGATGGCAAGTTTCAGTTTT 58.897 33.333 15.79 0.00 0.00 2.43
587 588 7.624549 TCTATCTAGATGGCAAGTTTCAGTTT 58.375 34.615 15.79 0.00 0.00 2.66
588 589 7.187824 TCTATCTAGATGGCAAGTTTCAGTT 57.812 36.000 15.79 0.00 0.00 3.16
589 590 6.798427 TCTATCTAGATGGCAAGTTTCAGT 57.202 37.500 15.79 0.00 0.00 3.41
590 591 7.768120 ACTTTCTATCTAGATGGCAAGTTTCAG 59.232 37.037 22.30 6.84 29.87 3.02
591 592 7.624549 ACTTTCTATCTAGATGGCAAGTTTCA 58.375 34.615 22.30 0.00 29.87 2.69
592 593 8.394121 CAACTTTCTATCTAGATGGCAAGTTTC 58.606 37.037 30.26 0.00 37.46 2.78
593 594 7.148171 GCAACTTTCTATCTAGATGGCAAGTTT 60.148 37.037 30.26 19.26 37.46 2.66
594 595 6.317391 GCAACTTTCTATCTAGATGGCAAGTT 59.683 38.462 28.46 28.46 38.87 2.66
595 596 5.819901 GCAACTTTCTATCTAGATGGCAAGT 59.180 40.000 22.30 22.30 33.45 3.16
596 597 5.238214 GGCAACTTTCTATCTAGATGGCAAG 59.762 44.000 21.23 21.23 35.50 4.01
597 598 5.126067 GGCAACTTTCTATCTAGATGGCAA 58.874 41.667 15.79 8.18 35.50 4.52
598 599 4.164030 TGGCAACTTTCTATCTAGATGGCA 59.836 41.667 15.79 12.52 39.94 4.92
599 600 4.708177 TGGCAACTTTCTATCTAGATGGC 58.292 43.478 15.79 10.06 35.78 4.40
600 601 5.180868 GCATGGCAACTTTCTATCTAGATGG 59.819 44.000 15.79 12.70 37.61 3.51
601 602 5.996513 AGCATGGCAACTTTCTATCTAGATG 59.003 40.000 15.79 5.75 37.61 2.90
602 603 6.185114 AGCATGGCAACTTTCTATCTAGAT 57.815 37.500 10.73 10.73 37.61 1.98
603 604 5.620738 AGCATGGCAACTTTCTATCTAGA 57.379 39.130 0.00 0.00 37.61 2.43
604 605 5.819379 TGAAGCATGGCAACTTTCTATCTAG 59.181 40.000 7.47 0.00 37.61 2.43
605 606 5.586243 GTGAAGCATGGCAACTTTCTATCTA 59.414 40.000 7.47 0.00 37.61 1.98
606 607 4.397417 GTGAAGCATGGCAACTTTCTATCT 59.603 41.667 7.47 0.00 37.61 1.98
607 608 4.156556 TGTGAAGCATGGCAACTTTCTATC 59.843 41.667 7.47 0.00 37.61 2.08
608 609 4.081406 TGTGAAGCATGGCAACTTTCTAT 58.919 39.130 7.47 0.00 37.61 1.98
609 610 3.485394 TGTGAAGCATGGCAACTTTCTA 58.515 40.909 7.47 0.00 37.61 2.10
610 611 2.309613 TGTGAAGCATGGCAACTTTCT 58.690 42.857 7.47 0.00 37.61 2.52
611 612 2.798976 TGTGAAGCATGGCAACTTTC 57.201 45.000 7.47 4.81 37.61 2.62
612 613 3.756933 ATTGTGAAGCATGGCAACTTT 57.243 38.095 7.47 0.00 37.61 2.66
613 614 3.756933 AATTGTGAAGCATGGCAACTT 57.243 38.095 5.89 5.89 37.61 2.66
614 615 4.281688 ACTTAATTGTGAAGCATGGCAACT 59.718 37.500 0.00 0.00 37.61 3.16
615 616 4.559153 ACTTAATTGTGAAGCATGGCAAC 58.441 39.130 0.00 0.00 0.00 4.17
616 617 4.870123 ACTTAATTGTGAAGCATGGCAA 57.130 36.364 0.00 0.00 0.00 4.52
617 618 4.558178 CAACTTAATTGTGAAGCATGGCA 58.442 39.130 0.00 0.00 33.20 4.92
618 619 3.368843 GCAACTTAATTGTGAAGCATGGC 59.631 43.478 0.00 0.00 40.77 4.40
619 620 3.928375 GGCAACTTAATTGTGAAGCATGG 59.072 43.478 0.00 0.00 40.77 3.66
620 621 4.558178 TGGCAACTTAATTGTGAAGCATG 58.442 39.130 0.00 0.00 40.77 4.06
621 622 4.870123 TGGCAACTTAATTGTGAAGCAT 57.130 36.364 0.00 0.00 40.77 3.79
622 623 4.321899 GGATGGCAACTTAATTGTGAAGCA 60.322 41.667 0.00 0.00 40.77 3.91
623 624 4.082026 AGGATGGCAACTTAATTGTGAAGC 60.082 41.667 0.00 0.00 40.77 3.86
624 625 5.644644 GAGGATGGCAACTTAATTGTGAAG 58.355 41.667 0.00 0.00 40.77 3.02
625 626 4.155826 CGAGGATGGCAACTTAATTGTGAA 59.844 41.667 0.00 0.00 40.77 3.18
626 627 3.689161 CGAGGATGGCAACTTAATTGTGA 59.311 43.478 0.00 0.00 40.77 3.58
627 628 3.181497 CCGAGGATGGCAACTTAATTGTG 60.181 47.826 0.00 0.00 40.77 3.33
628 629 3.016736 CCGAGGATGGCAACTTAATTGT 58.983 45.455 0.00 0.00 40.77 2.71
629 630 2.358898 CCCGAGGATGGCAACTTAATTG 59.641 50.000 0.00 0.00 41.69 2.32
630 631 2.025321 ACCCGAGGATGGCAACTTAATT 60.025 45.455 0.00 0.00 37.61 1.40
631 632 1.564348 ACCCGAGGATGGCAACTTAAT 59.436 47.619 0.00 0.00 37.61 1.40
632 633 0.988832 ACCCGAGGATGGCAACTTAA 59.011 50.000 0.00 0.00 37.61 1.85
633 634 1.868713 TACCCGAGGATGGCAACTTA 58.131 50.000 0.00 0.00 37.61 2.24
634 635 0.988832 TTACCCGAGGATGGCAACTT 59.011 50.000 0.00 0.00 37.61 2.66
635 636 1.213296 ATTACCCGAGGATGGCAACT 58.787 50.000 0.00 0.00 37.61 3.16
636 637 2.052782 AATTACCCGAGGATGGCAAC 57.947 50.000 0.00 0.00 0.00 4.17
641 642 5.006358 CGACAACTTTAATTACCCGAGGATG 59.994 44.000 0.00 0.00 0.00 3.51
665 666 8.837389 AGCAATTCCGTCCTAATATTTTTCTAC 58.163 33.333 0.00 0.00 0.00 2.59
666 667 8.974060 AGCAATTCCGTCCTAATATTTTTCTA 57.026 30.769 0.00 0.00 0.00 2.10
668 669 7.648112 GGAAGCAATTCCGTCCTAATATTTTTC 59.352 37.037 0.00 0.00 31.68 2.29
674 675 4.703897 CAGGAAGCAATTCCGTCCTAATA 58.296 43.478 3.32 0.00 45.64 0.98
693 694 2.890808 AGTATCATACGTGTGGCAGG 57.109 50.000 12.66 0.00 0.00 4.85
765 766 2.091499 AGTCCCTCCGGTTTTCCTTTTT 60.091 45.455 0.00 0.00 37.95 1.94
766 767 1.497716 AGTCCCTCCGGTTTTCCTTTT 59.502 47.619 0.00 0.00 37.95 2.27
767 768 1.146452 AGTCCCTCCGGTTTTCCTTT 58.854 50.000 0.00 0.00 37.95 3.11
768 769 1.627329 GTAGTCCCTCCGGTTTTCCTT 59.373 52.381 0.00 0.00 37.95 3.36
769 770 1.273759 GTAGTCCCTCCGGTTTTCCT 58.726 55.000 0.00 0.00 37.95 3.36
770 771 0.978907 TGTAGTCCCTCCGGTTTTCC 59.021 55.000 0.00 0.00 0.00 3.13
771 772 4.476628 TTATGTAGTCCCTCCGGTTTTC 57.523 45.455 0.00 0.00 0.00 2.29
772 773 4.914177 TTTATGTAGTCCCTCCGGTTTT 57.086 40.909 0.00 0.00 0.00 2.43
773 774 5.446260 AATTTATGTAGTCCCTCCGGTTT 57.554 39.130 0.00 0.00 0.00 3.27
774 775 5.901276 TCTAATTTATGTAGTCCCTCCGGTT 59.099 40.000 0.00 0.00 0.00 4.44
775 776 5.461327 TCTAATTTATGTAGTCCCTCCGGT 58.539 41.667 0.00 0.00 0.00 5.28
776 777 6.415206 TTCTAATTTATGTAGTCCCTCCGG 57.585 41.667 0.00 0.00 0.00 5.14
850 851 1.382629 GGCTTGGCTGGGAAGGTAA 59.617 57.895 0.00 0.00 0.00 2.85
1123 1136 8.634444 GGTCTAGATGTGACATATAGACAAACT 58.366 37.037 39.00 18.13 41.86 2.66
1124 1137 7.868415 GGGTCTAGATGTGACATATAGACAAAC 59.132 40.741 39.00 30.03 41.86 2.93
1125 1138 7.785028 AGGGTCTAGATGTGACATATAGACAAA 59.215 37.037 39.00 17.87 41.86 2.83
1126 1139 7.298374 AGGGTCTAGATGTGACATATAGACAA 58.702 38.462 39.00 18.15 41.86 3.18
1127 1140 6.853490 AGGGTCTAGATGTGACATATAGACA 58.147 40.000 39.00 18.71 41.86 3.41
1128 1141 7.768807 AAGGGTCTAGATGTGACATATAGAC 57.231 40.000 35.01 35.01 40.31 2.59
1129 1142 7.255977 GCAAAGGGTCTAGATGTGACATATAGA 60.256 40.741 22.04 22.04 36.26 1.98
1130 1143 6.870965 GCAAAGGGTCTAGATGTGACATATAG 59.129 42.308 18.49 18.49 36.26 1.31
1131 1144 6.554982 AGCAAAGGGTCTAGATGTGACATATA 59.445 38.462 0.00 0.00 36.26 0.86
1132 1145 5.367937 AGCAAAGGGTCTAGATGTGACATAT 59.632 40.000 0.00 0.00 36.26 1.78
1133 1146 4.716784 AGCAAAGGGTCTAGATGTGACATA 59.283 41.667 0.00 0.00 36.26 2.29
1134 1147 3.521126 AGCAAAGGGTCTAGATGTGACAT 59.479 43.478 0.00 0.00 36.26 3.06
1135 1148 2.906389 AGCAAAGGGTCTAGATGTGACA 59.094 45.455 0.00 0.00 36.26 3.58
1136 1149 3.618690 AGCAAAGGGTCTAGATGTGAC 57.381 47.619 0.00 0.00 0.00 3.67
1137 1150 4.640771 AAAGCAAAGGGTCTAGATGTGA 57.359 40.909 0.00 0.00 0.00 3.58
1138 1151 5.006386 AGAAAAGCAAAGGGTCTAGATGTG 58.994 41.667 0.00 0.00 0.00 3.21
1139 1152 5.006386 CAGAAAAGCAAAGGGTCTAGATGT 58.994 41.667 0.00 0.00 0.00 3.06
1140 1153 4.142513 GCAGAAAAGCAAAGGGTCTAGATG 60.143 45.833 0.00 0.00 0.00 2.90
1141 1154 4.013050 GCAGAAAAGCAAAGGGTCTAGAT 58.987 43.478 0.00 0.00 0.00 1.98
1142 1155 3.073062 AGCAGAAAAGCAAAGGGTCTAGA 59.927 43.478 0.00 0.00 36.85 2.43
1143 1156 3.416156 AGCAGAAAAGCAAAGGGTCTAG 58.584 45.455 0.00 0.00 36.85 2.43
1144 1157 3.508845 AGCAGAAAAGCAAAGGGTCTA 57.491 42.857 0.00 0.00 36.85 2.59
1145 1158 2.363359 CAAGCAGAAAAGCAAAGGGTCT 59.637 45.455 0.00 0.00 36.85 3.85
1146 1159 2.546584 CCAAGCAGAAAAGCAAAGGGTC 60.547 50.000 0.00 0.00 36.85 4.46
1147 1160 1.413812 CCAAGCAGAAAAGCAAAGGGT 59.586 47.619 0.00 0.00 36.85 4.34
1148 1161 1.413812 ACCAAGCAGAAAAGCAAAGGG 59.586 47.619 0.00 0.00 36.85 3.95
1149 1162 2.747436 GACCAAGCAGAAAAGCAAAGG 58.253 47.619 0.00 0.00 36.85 3.11
1150 1163 2.033299 TCGACCAAGCAGAAAAGCAAAG 59.967 45.455 0.00 0.00 36.85 2.77
1151 1164 2.020720 TCGACCAAGCAGAAAAGCAAA 58.979 42.857 0.00 0.00 36.85 3.68
1152 1165 1.674359 TCGACCAAGCAGAAAAGCAA 58.326 45.000 0.00 0.00 36.85 3.91
1153 1166 1.536766 CATCGACCAAGCAGAAAAGCA 59.463 47.619 0.00 0.00 36.85 3.91
1154 1167 1.135575 CCATCGACCAAGCAGAAAAGC 60.136 52.381 0.00 0.00 0.00 3.51
1155 1168 2.095567 CACCATCGACCAAGCAGAAAAG 60.096 50.000 0.00 0.00 0.00 2.27
1156 1169 1.879380 CACCATCGACCAAGCAGAAAA 59.121 47.619 0.00 0.00 0.00 2.29
1157 1170 1.522668 CACCATCGACCAAGCAGAAA 58.477 50.000 0.00 0.00 0.00 2.52
1158 1171 0.955428 GCACCATCGACCAAGCAGAA 60.955 55.000 0.00 0.00 0.00 3.02
1159 1172 1.375908 GCACCATCGACCAAGCAGA 60.376 57.895 0.00 0.00 0.00 4.26
1160 1173 2.401766 GGCACCATCGACCAAGCAG 61.402 63.158 0.00 0.00 0.00 4.24
1166 1179 2.244651 GCATACGGCACCATCGACC 61.245 63.158 0.00 0.00 43.97 4.79
1190 1203 3.460103 CAGCCAATCAAACAAACAAGCT 58.540 40.909 0.00 0.00 0.00 3.74
1288 1301 5.296035 AGGGCGACAAATTTACAAGCTATAC 59.704 40.000 0.00 0.00 0.00 1.47
1446 1460 6.174760 ACGTATATTAGAGGTGTTGGCAAAA 58.825 36.000 0.00 0.00 0.00 2.44
1792 2209 0.891904 GGGGGCGAGTGCACTAAAAA 60.892 55.000 21.73 0.00 46.54 1.94
1793 2210 1.302993 GGGGGCGAGTGCACTAAAA 60.303 57.895 21.73 0.00 46.54 1.52
1794 2211 2.058125 TTGGGGGCGAGTGCACTAAA 62.058 55.000 21.73 3.19 46.54 1.85
1795 2212 2.521451 TTGGGGGCGAGTGCACTAA 61.521 57.895 21.73 5.51 46.54 2.24
1798 2215 4.947147 TGTTGGGGGCGAGTGCAC 62.947 66.667 9.40 9.40 46.66 4.57
1954 2371 6.763355 ACTATTGCGAGTATGAATCTGGATT 58.237 36.000 0.00 0.00 0.00 3.01
2159 2583 7.166691 TCACTGTAGAATGGGTAAACTCTAC 57.833 40.000 0.00 0.00 40.36 2.59
2204 2628 3.735820 GCGTGTATATGGGTGTCTTCGAA 60.736 47.826 0.00 0.00 0.00 3.71
2241 2931 7.891220 ACAATCGCGAAATATATAAACGAATCG 59.109 33.333 15.24 0.00 0.00 3.34
2245 2935 7.843482 ACAACAATCGCGAAATATATAAACGA 58.157 30.769 15.24 6.46 0.00 3.85
2284 2974 7.865706 AAACTACCTTTATGGCTACAATGAG 57.134 36.000 0.00 0.00 40.22 2.90
2405 3095 9.036671 GTCTTATTGGAAGAGAAGTATTGTAGC 57.963 37.037 0.00 0.00 0.00 3.58
2418 3108 4.127171 GCGCTATTGGTCTTATTGGAAGA 58.873 43.478 0.00 0.00 0.00 2.87
2420 3110 3.879998 TGCGCTATTGGTCTTATTGGAA 58.120 40.909 9.73 0.00 0.00 3.53
2441 3131 8.695456 ACTGTTAAACTCAAATGTCAAAGGATT 58.305 29.630 0.00 0.00 0.00 3.01
2507 3198 7.254227 TGATTACAAACTAGTTGGTTCACAC 57.746 36.000 20.62 9.06 41.97 3.82
2508 3199 7.771361 TCTTGATTACAAACTAGTTGGTTCACA 59.229 33.333 20.62 14.23 41.97 3.58
2509 3200 8.149973 TCTTGATTACAAACTAGTTGGTTCAC 57.850 34.615 20.62 12.11 41.97 3.18
2510 3201 8.740123 TTCTTGATTACAAACTAGTTGGTTCA 57.260 30.769 20.62 15.71 41.97 3.18
2513 3204 9.797556 GTTTTTCTTGATTACAAACTAGTTGGT 57.202 29.630 19.44 19.44 41.97 3.67
2526 3217 6.248433 AGGCCTGATCTGTTTTTCTTGATTA 58.752 36.000 3.11 0.00 0.00 1.75
2689 3380 9.650539 TTATTTGCAGCTTTTATTTCATTAGCA 57.349 25.926 0.00 0.00 34.37 3.49
2692 3383 9.097257 GCCTTATTTGCAGCTTTTATTTCATTA 57.903 29.630 0.00 0.00 0.00 1.90
2695 3386 6.700352 AGCCTTATTTGCAGCTTTTATTTCA 58.300 32.000 0.00 0.00 29.27 2.69
2816 3507 5.611796 TTCACACACTGATCTTGTATTGC 57.388 39.130 0.00 0.00 0.00 3.56
2864 3555 9.955102 TGTAGAGTGAACTAAACATACTCTCTA 57.045 33.333 8.32 0.00 43.19 2.43
3020 3715 4.019231 TGAGAGACAGGCTAGAGAGTTGTA 60.019 45.833 0.00 0.00 0.00 2.41
3035 3730 8.185506 TGGTAGTTATACAGTTTTGAGAGACA 57.814 34.615 0.00 0.00 33.21 3.41
3057 3752 1.147817 AGGTCCCAAGCAAGATTTGGT 59.852 47.619 3.60 0.00 42.85 3.67
3075 3770 2.375509 AGGAAGTTTACTCCCACCAAGG 59.624 50.000 0.00 0.00 37.03 3.61
3155 4069 5.066968 AGGAAGAAATCAAGAGTCGTCTC 57.933 43.478 1.04 1.04 40.70 3.36
3156 4070 5.233988 CAAGGAAGAAATCAAGAGTCGTCT 58.766 41.667 0.00 0.00 32.81 4.18
3157 4071 4.390297 CCAAGGAAGAAATCAAGAGTCGTC 59.610 45.833 0.00 0.00 0.00 4.20
3158 4072 4.319177 CCAAGGAAGAAATCAAGAGTCGT 58.681 43.478 0.00 0.00 0.00 4.34
3159 4073 3.126000 GCCAAGGAAGAAATCAAGAGTCG 59.874 47.826 0.00 0.00 0.00 4.18
3160 4074 4.331108 AGCCAAGGAAGAAATCAAGAGTC 58.669 43.478 0.00 0.00 0.00 3.36
3161 4075 4.331108 GAGCCAAGGAAGAAATCAAGAGT 58.669 43.478 0.00 0.00 0.00 3.24
3162 4076 3.693578 GGAGCCAAGGAAGAAATCAAGAG 59.306 47.826 0.00 0.00 0.00 2.85
3163 4077 3.331889 AGGAGCCAAGGAAGAAATCAAGA 59.668 43.478 0.00 0.00 0.00 3.02
3164 4078 3.694926 AGGAGCCAAGGAAGAAATCAAG 58.305 45.455 0.00 0.00 0.00 3.02
3166 4080 3.562176 GGAAGGAGCCAAGGAAGAAATCA 60.562 47.826 0.00 0.00 0.00 2.57
3167 4081 3.020274 GGAAGGAGCCAAGGAAGAAATC 58.980 50.000 0.00 0.00 0.00 2.17
3168 4082 2.619074 CGGAAGGAGCCAAGGAAGAAAT 60.619 50.000 0.00 0.00 0.00 2.17
3173 4102 1.677552 GACGGAAGGAGCCAAGGAA 59.322 57.895 0.00 0.00 0.00 3.36
3210 4139 2.496817 CTGCAGGGAGAGTACCGC 59.503 66.667 5.57 0.00 0.00 5.68
3286 6842 1.683365 ATGGTGGCCTTGGTCATGC 60.683 57.895 3.32 0.00 0.00 4.06
3291 6847 1.852157 TCTCCATGGTGGCCTTGGT 60.852 57.895 12.58 0.00 45.58 3.67
3292 6848 1.379044 GTCTCCATGGTGGCCTTGG 60.379 63.158 12.58 12.34 46.42 3.61
3302 6858 1.000843 TCGTTGTCCTGTGTCTCCATG 59.999 52.381 0.00 0.00 0.00 3.66
3367 6923 5.142061 TCTTTACAGGACAAGCATAACGA 57.858 39.130 0.00 0.00 0.00 3.85
3425 9240 4.354686 AGAGGTAAGGATAGGGTAGAGACC 59.645 50.000 0.00 0.00 46.13 3.85
3433 9248 5.663556 AGTCAAGAAAGAGGTAAGGATAGGG 59.336 44.000 0.00 0.00 0.00 3.53
3435 9250 6.460399 CCGAGTCAAGAAAGAGGTAAGGATAG 60.460 46.154 0.00 0.00 0.00 2.08
3436 9251 5.360144 CCGAGTCAAGAAAGAGGTAAGGATA 59.640 44.000 0.00 0.00 0.00 2.59
3437 9252 4.160626 CCGAGTCAAGAAAGAGGTAAGGAT 59.839 45.833 0.00 0.00 0.00 3.24
3438 9253 3.510360 CCGAGTCAAGAAAGAGGTAAGGA 59.490 47.826 0.00 0.00 0.00 3.36
3446 9262 2.286833 CGCAAAACCGAGTCAAGAAAGA 59.713 45.455 0.00 0.00 0.00 2.52
3549 9570 6.404074 GCAATAGTGAAAATCAGAGAGGGTTG 60.404 42.308 0.00 0.00 0.00 3.77
3579 9602 2.504367 AGTTGAACATGGAGGAAACCG 58.496 47.619 0.00 0.00 0.00 4.44
3587 9610 5.654650 ACAAAACAAGGTAGTTGAACATGGA 59.345 36.000 0.00 0.00 38.60 3.41
3741 10075 7.716768 AACTTTTTACTTCTCTCAGCACTAC 57.283 36.000 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.