Multiple sequence alignment - TraesCS3B01G216400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G216400 chr3B 100.000 5279 0 0 1 5279 257284333 257279055 0.000000e+00 9749.0
1 TraesCS3B01G216400 chr3D 93.429 3333 102 36 567 3847 179182159 179178892 0.000000e+00 4833.0
2 TraesCS3B01G216400 chr3D 94.142 717 30 7 3843 4557 179173555 179172849 0.000000e+00 1081.0
3 TraesCS3B01G216400 chr3D 83.906 553 55 17 28 562 179182751 179182215 1.020000e-136 497.0
4 TraesCS3B01G216400 chr3D 87.549 257 13 5 4683 4935 179172619 179172378 4.030000e-71 279.0
5 TraesCS3B01G216400 chr3D 83.684 190 24 6 5095 5279 179172380 179172193 7.030000e-39 172.0
6 TraesCS3B01G216400 chr3D 91.667 60 4 1 4926 4985 317203603 317203545 1.220000e-11 82.4
7 TraesCS3B01G216400 chr3A 95.830 2254 60 14 2307 4546 221948887 221946654 0.000000e+00 3611.0
8 TraesCS3B01G216400 chr3A 88.262 2019 82 49 317 2253 221950931 221948986 0.000000e+00 2272.0
9 TraesCS3B01G216400 chr3A 92.276 246 13 5 4683 4927 221946410 221946170 1.410000e-90 344.0
10 TraesCS3B01G216400 chr1D 77.542 236 50 2 60 292 285436055 285435820 7.130000e-29 139.0
11 TraesCS3B01G216400 chr1D 88.350 103 12 0 4996 5098 296894401 296894503 2.000000e-24 124.0
12 TraesCS3B01G216400 chr1D 88.350 103 12 0 4996 5098 417625922 417626024 2.000000e-24 124.0
13 TraesCS3B01G216400 chr1D 92.537 67 3 1 4933 4997 415496809 415496743 1.570000e-15 95.3
14 TraesCS3B01G216400 chr1D 87.671 73 5 3 2180 2251 415688464 415688395 1.220000e-11 82.4
15 TraesCS3B01G216400 chr6D 82.099 162 28 1 28 189 158571292 158571132 2.560000e-28 137.0
16 TraesCS3B01G216400 chr6D 89.320 103 11 0 4996 5098 42959769 42959871 4.290000e-26 130.0
17 TraesCS3B01G216400 chr5D 89.320 103 11 0 4996 5098 503081363 503081261 4.290000e-26 130.0
18 TraesCS3B01G216400 chr5D 94.915 59 1 2 2204 2261 438782946 438782889 2.020000e-14 91.6
19 TraesCS3B01G216400 chr5D 94.545 55 3 0 4931 4985 362579492 362579438 9.420000e-13 86.1
20 TraesCS3B01G216400 chr4B 88.785 107 10 2 4996 5101 362138010 362137905 4.290000e-26 130.0
21 TraesCS3B01G216400 chr4B 77.987 159 28 6 131 285 505097763 505097608 5.630000e-15 93.5
22 TraesCS3B01G216400 chr7D 90.000 100 8 2 5000 5098 15575894 15575992 1.540000e-25 128.0
23 TraesCS3B01G216400 chr7D 98.113 53 0 1 2204 2256 152649534 152649585 2.020000e-14 91.6
24 TraesCS3B01G216400 chr7D 96.429 56 1 1 2203 2257 256187625 256187570 2.020000e-14 91.6
25 TraesCS3B01G216400 chr7D 96.226 53 2 0 4933 4985 329047510 329047458 2.620000e-13 87.9
26 TraesCS3B01G216400 chr7D 88.710 62 7 0 4933 4994 412684588 412684527 5.670000e-10 76.8
27 TraesCS3B01G216400 chr5B 88.462 104 10 2 4996 5098 233445181 233445283 2.000000e-24 124.0
28 TraesCS3B01G216400 chr4D 88.462 104 11 1 4999 5101 282356347 282356450 2.000000e-24 124.0
29 TraesCS3B01G216400 chr4D 80.240 167 27 6 129 292 132754570 132754407 2.580000e-23 121.0
30 TraesCS3B01G216400 chr7A 87.273 110 10 3 4994 5102 504221447 504221553 7.180000e-24 122.0
31 TraesCS3B01G216400 chr6B 78.750 160 31 3 32 189 288300482 288300640 2.600000e-18 104.0
32 TraesCS3B01G216400 chr6B 96.429 56 1 1 2203 2257 225872638 225872693 2.020000e-14 91.6
33 TraesCS3B01G216400 chr6A 77.640 161 32 2 128 284 592994185 592994025 1.570000e-15 95.3
34 TraesCS3B01G216400 chr6A 85.897 78 11 0 129 206 617495182 617495105 3.390000e-12 84.2
35 TraesCS3B01G216400 chr7B 100.000 50 0 0 2204 2253 114501870 114501919 5.630000e-15 93.5
36 TraesCS3B01G216400 chr2B 77.439 164 30 6 128 286 53646627 53646466 2.020000e-14 91.6
37 TraesCS3B01G216400 chr2B 96.226 53 2 0 4933 4985 14051959 14052011 2.620000e-13 87.9
38 TraesCS3B01G216400 chr2A 96.364 55 1 1 2204 2257 775756375 775756429 7.280000e-14 89.8
39 TraesCS3B01G216400 chr2A 94.340 53 2 1 4934 4986 749834240 749834291 4.380000e-11 80.5
40 TraesCS3B01G216400 chr1B 77.301 163 30 7 129 286 415685114 415684954 7.280000e-14 89.8
41 TraesCS3B01G216400 chr2D 96.154 52 2 0 4934 4985 69541105 69541054 9.420000e-13 86.1
42 TraesCS3B01G216400 chr4A 87.879 66 6 1 4934 4997 729864608 729864543 5.670000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G216400 chr3B 257279055 257284333 5278 True 9749.000000 9749 100.000000 1 5279 1 chr3B.!!$R1 5278
1 TraesCS3B01G216400 chr3D 179178892 179182751 3859 True 2665.000000 4833 88.667500 28 3847 2 chr3D.!!$R3 3819
2 TraesCS3B01G216400 chr3D 179172193 179173555 1362 True 510.666667 1081 88.458333 3843 5279 3 chr3D.!!$R2 1436
3 TraesCS3B01G216400 chr3A 221946170 221950931 4761 True 2075.666667 3611 92.122667 317 4927 3 chr3A.!!$R1 4610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 140 0.036388 GACGAACCTGGGCATTCTCA 60.036 55.000 0.00 0.0 0.00 3.27 F
260 272 0.036388 TCCGTCTGGACATTTGAGGC 60.036 55.000 1.63 0.0 40.17 4.70 F
1459 1589 0.240411 AAGTACGCCACGACTGACTC 59.760 55.000 0.00 0.0 0.00 3.36 F
1779 1909 1.077068 CCACCCGCTCTCTCTCTCT 60.077 63.158 0.00 0.0 0.00 3.10 F
1791 1921 4.040047 TCTCTCTCTCTCTCTCTGACCAT 58.960 47.826 0.00 0.0 0.00 3.55 F
2305 2519 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1778 1908 1.136695 GCAGGACATGGTCAGAGAGAG 59.863 57.143 0.00 0.0 33.68 3.20 R
1779 1909 1.189752 GCAGGACATGGTCAGAGAGA 58.810 55.000 0.00 0.0 33.68 3.10 R
2301 2515 0.031716 CACATGGAGGGAGAGGGAGA 60.032 60.000 0.00 0.0 0.00 3.71 R
3072 3287 2.298729 TGCATTTTTAAGGGGTGTCAGC 59.701 45.455 0.00 0.0 0.00 4.26 R
3738 3957 2.409064 TTCGGCTTGATATAGGGGGA 57.591 50.000 0.00 0.0 0.00 4.81 R
4282 4510 1.625616 CGGATACTTGACGTCCACAC 58.374 55.000 14.12 0.0 32.23 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.312052 TTGCATGCTACGTTCCCC 57.688 55.556 20.33 0.00 0.00 4.81
18 19 1.376848 TTGCATGCTACGTTCCCCA 59.623 52.632 20.33 0.00 0.00 4.96
19 20 0.250945 TTGCATGCTACGTTCCCCAA 60.251 50.000 20.33 0.00 0.00 4.12
20 21 0.958382 TGCATGCTACGTTCCCCAAC 60.958 55.000 20.33 0.00 0.00 3.77
21 22 0.958382 GCATGCTACGTTCCCCAACA 60.958 55.000 11.37 0.00 32.14 3.33
22 23 1.529226 CATGCTACGTTCCCCAACAA 58.471 50.000 0.00 0.00 32.14 2.83
23 24 1.468520 CATGCTACGTTCCCCAACAAG 59.531 52.381 0.00 0.00 32.14 3.16
24 25 0.759959 TGCTACGTTCCCCAACAAGA 59.240 50.000 0.00 0.00 32.14 3.02
25 26 1.349688 TGCTACGTTCCCCAACAAGAT 59.650 47.619 0.00 0.00 32.14 2.40
26 27 2.007608 GCTACGTTCCCCAACAAGATC 58.992 52.381 0.00 0.00 32.14 2.75
30 31 1.739067 GTTCCCCAACAAGATCGGAG 58.261 55.000 0.00 0.00 32.14 4.63
63 64 1.087501 GGCGGAAGAGTTTGATGGAC 58.912 55.000 0.00 0.00 0.00 4.02
66 67 2.814336 GCGGAAGAGTTTGATGGACTTT 59.186 45.455 0.00 0.00 0.00 2.66
67 68 3.365364 GCGGAAGAGTTTGATGGACTTTG 60.365 47.826 0.00 0.00 0.00 2.77
82 83 3.679502 GGACTTTGTGCAATTTATGGTGC 59.320 43.478 0.00 0.00 41.29 5.01
88 89 2.422127 GTGCAATTTATGGTGCGGTAGT 59.578 45.455 0.00 0.00 43.93 2.73
92 93 4.699637 CAATTTATGGTGCGGTAGTCCTA 58.300 43.478 0.00 0.00 0.00 2.94
99 100 0.396139 TGCGGTAGTCCTATCGGGTT 60.396 55.000 8.88 0.00 39.85 4.11
114 125 1.283793 GGTTCGACTTGACGGACGA 59.716 57.895 0.00 0.00 41.99 4.20
115 126 0.318107 GGTTCGACTTGACGGACGAA 60.318 55.000 0.00 0.00 41.99 3.85
118 129 1.168407 TCGACTTGACGGACGAACCT 61.168 55.000 0.00 0.00 36.31 3.50
127 138 1.299976 GGACGAACCTGGGCATTCT 59.700 57.895 0.00 0.00 35.41 2.40
129 140 0.036388 GACGAACCTGGGCATTCTCA 60.036 55.000 0.00 0.00 0.00 3.27
132 143 2.439507 ACGAACCTGGGCATTCTCATAT 59.560 45.455 0.00 0.00 0.00 1.78
134 145 3.416156 GAACCTGGGCATTCTCATATCC 58.584 50.000 0.00 0.00 0.00 2.59
141 152 2.622436 GCATTCTCATATCCGCCCTAC 58.378 52.381 0.00 0.00 0.00 3.18
142 153 2.028112 GCATTCTCATATCCGCCCTACA 60.028 50.000 0.00 0.00 0.00 2.74
164 175 0.839277 TGGGCTGGATATGAGTGGTG 59.161 55.000 0.00 0.00 0.00 4.17
185 196 1.745489 GGCCAGCCTAGACGTTTGG 60.745 63.158 0.00 0.00 0.00 3.28
189 200 2.437895 GCCTAGACGTTTGGGGCC 60.438 66.667 10.58 0.00 37.12 5.80
193 204 2.459202 CTAGACGTTTGGGGCCCGTT 62.459 60.000 19.83 0.00 34.51 4.44
198 209 4.338710 TTTGGGGCCCGTTCGAGG 62.339 66.667 19.83 0.00 0.00 4.63
207 218 4.052229 CGTTCGAGGTGCCCGTCT 62.052 66.667 0.00 0.00 0.00 4.18
208 219 2.693762 CGTTCGAGGTGCCCGTCTA 61.694 63.158 0.00 0.00 0.00 2.59
209 220 1.814527 GTTCGAGGTGCCCGTCTAT 59.185 57.895 0.00 0.00 0.00 1.98
210 221 0.527817 GTTCGAGGTGCCCGTCTATG 60.528 60.000 0.00 0.00 0.00 2.23
260 272 0.036388 TCCGTCTGGACATTTGAGGC 60.036 55.000 1.63 0.00 40.17 4.70
261 273 1.361668 CCGTCTGGACATTTGAGGCG 61.362 60.000 1.63 0.00 37.49 5.52
262 274 1.361668 CGTCTGGACATTTGAGGCGG 61.362 60.000 1.63 0.00 31.21 6.13
263 275 1.026718 GTCTGGACATTTGAGGCGGG 61.027 60.000 0.00 0.00 0.00 6.13
264 276 2.361104 TGGACATTTGAGGCGGGC 60.361 61.111 0.00 0.00 0.00 6.13
270 282 1.379044 ATTTGAGGCGGGCTTGAGG 60.379 57.895 5.24 0.00 0.00 3.86
271 283 4.722700 TTGAGGCGGGCTTGAGGC 62.723 66.667 5.24 0.00 40.90 4.70
296 308 2.012673 GCTGCAGATGTCCTAAACAGG 58.987 52.381 20.43 0.00 42.37 4.00
297 309 2.355108 GCTGCAGATGTCCTAAACAGGA 60.355 50.000 20.43 0.00 42.37 3.86
299 311 4.521146 CTGCAGATGTCCTAAACAGGATT 58.479 43.478 8.42 0.00 42.37 3.01
300 312 5.674525 CTGCAGATGTCCTAAACAGGATTA 58.325 41.667 8.42 0.00 42.37 1.75
301 313 6.252599 TGCAGATGTCCTAAACAGGATTAT 57.747 37.500 0.00 0.00 42.37 1.28
302 314 6.662755 TGCAGATGTCCTAAACAGGATTATT 58.337 36.000 0.00 0.00 42.37 1.40
304 316 7.283127 TGCAGATGTCCTAAACAGGATTATTTC 59.717 37.037 0.00 0.00 42.37 2.17
305 317 7.255277 GCAGATGTCCTAAACAGGATTATTTCC 60.255 40.741 0.00 0.00 42.37 3.13
312 324 8.174085 TCCTAAACAGGATTATTTCCCTTTGAA 58.826 33.333 0.00 0.00 46.81 2.69
380 392 7.687941 TTAGAGAGGTTTTCCATAGCAAAAG 57.312 36.000 0.00 0.00 43.73 2.27
389 404 7.309805 GGTTTTCCATAGCAAAAGGAAGTACAT 60.310 37.037 0.00 0.00 41.97 2.29
524 544 4.684484 ATTCTGATGAGCAGTAGCATGA 57.316 40.909 0.00 0.00 45.14 3.07
582 653 1.203994 TCGCTGTAGAAGGTACAAGCC 59.796 52.381 0.00 0.00 0.00 4.35
589 660 2.552231 GAAGGTACAAGCCGGCCCAT 62.552 60.000 26.15 9.85 0.00 4.00
639 710 1.956170 ACGGAGAGCGCAAACACAG 60.956 57.895 11.47 2.82 0.00 3.66
647 718 0.376852 GCGCAAACACAGAGTTGACA 59.623 50.000 0.30 0.00 41.19 3.58
651 722 2.420022 GCAAACACAGAGTTGACACAGT 59.580 45.455 0.00 0.00 41.19 3.55
669 740 0.928229 GTGCACAGACGACGTTTTCT 59.072 50.000 13.17 0.00 0.00 2.52
672 743 1.847818 CACAGACGACGTTTTCTCCA 58.152 50.000 0.13 0.00 0.00 3.86
675 746 1.993370 CAGACGACGTTTTCTCCATCC 59.007 52.381 0.13 0.00 0.00 3.51
678 749 0.249398 CGACGTTTTCTCCATCCCCT 59.751 55.000 0.00 0.00 0.00 4.79
679 750 1.338769 CGACGTTTTCTCCATCCCCTT 60.339 52.381 0.00 0.00 0.00 3.95
680 751 2.791655 GACGTTTTCTCCATCCCCTTT 58.208 47.619 0.00 0.00 0.00 3.11
681 752 2.747989 GACGTTTTCTCCATCCCCTTTC 59.252 50.000 0.00 0.00 0.00 2.62
682 753 2.092323 CGTTTTCTCCATCCCCTTTCC 58.908 52.381 0.00 0.00 0.00 3.13
683 754 2.290960 CGTTTTCTCCATCCCCTTTCCT 60.291 50.000 0.00 0.00 0.00 3.36
687 758 0.759346 CTCCATCCCCTTTCCTACCG 59.241 60.000 0.00 0.00 0.00 4.02
732 803 2.520458 CTGTTGGCCCCACCTTCA 59.480 61.111 0.00 0.00 40.22 3.02
733 804 1.077265 CTGTTGGCCCCACCTTCAT 59.923 57.895 0.00 0.00 40.22 2.57
735 806 1.384191 GTTGGCCCCACCTTCATCT 59.616 57.895 0.00 0.00 40.22 2.90
743 814 1.021390 CCACCTTCATCTGACACGGC 61.021 60.000 0.00 0.00 0.00 5.68
779 860 4.489771 GCATCCCAGGACACCCCG 62.490 72.222 0.00 0.00 40.87 5.73
780 861 4.489771 CATCCCAGGACACCCCGC 62.490 72.222 0.00 0.00 40.87 6.13
781 862 4.741239 ATCCCAGGACACCCCGCT 62.741 66.667 0.00 0.00 40.87 5.52
785 866 4.394712 CAGGACACCCCGCTCACC 62.395 72.222 0.00 0.00 40.87 4.02
786 867 4.640690 AGGACACCCCGCTCACCT 62.641 66.667 0.00 0.00 40.87 4.00
787 868 4.083862 GGACACCCCGCTCACCTC 62.084 72.222 0.00 0.00 0.00 3.85
788 869 2.997897 GACACCCCGCTCACCTCT 60.998 66.667 0.00 0.00 0.00 3.69
796 890 2.484947 CCCCGCTCACCTCTTAATTACC 60.485 54.545 0.00 0.00 0.00 2.85
821 915 6.808212 CGTGATGCCATTTGTTCTTTCTTAAT 59.192 34.615 0.00 0.00 0.00 1.40
855 951 0.876342 GAATGGCTACCTCGCTTCCG 60.876 60.000 0.00 0.00 0.00 4.30
880 976 2.027625 GTCCCGACCGAGCACTTTG 61.028 63.158 0.00 0.00 0.00 2.77
917 1019 3.068691 CGCTTCTCCCTCCCGTCA 61.069 66.667 0.00 0.00 0.00 4.35
956 1058 2.723273 CAAAACCCCTACCCACTGATC 58.277 52.381 0.00 0.00 0.00 2.92
1116 1228 3.807538 GTGCTCGCCATGGTGCTG 61.808 66.667 20.97 15.78 0.00 4.41
1152 1270 1.597461 CAACGGAGGAGGAGGAACC 59.403 63.158 0.00 0.00 39.35 3.62
1459 1589 0.240411 AAGTACGCCACGACTGACTC 59.760 55.000 0.00 0.00 0.00 3.36
1503 1633 5.379732 TCTCTGTTTCGGTTTGTTTGTTT 57.620 34.783 0.00 0.00 0.00 2.83
1504 1634 5.157781 TCTCTGTTTCGGTTTGTTTGTTTG 58.842 37.500 0.00 0.00 0.00 2.93
1505 1635 4.872664 TCTGTTTCGGTTTGTTTGTTTGT 58.127 34.783 0.00 0.00 0.00 2.83
1506 1636 5.290386 TCTGTTTCGGTTTGTTTGTTTGTT 58.710 33.333 0.00 0.00 0.00 2.83
1507 1637 5.753921 TCTGTTTCGGTTTGTTTGTTTGTTT 59.246 32.000 0.00 0.00 0.00 2.83
1508 1638 5.738370 TGTTTCGGTTTGTTTGTTTGTTTG 58.262 33.333 0.00 0.00 0.00 2.93
1509 1639 5.293569 TGTTTCGGTTTGTTTGTTTGTTTGT 59.706 32.000 0.00 0.00 0.00 2.83
1510 1640 5.986004 TTCGGTTTGTTTGTTTGTTTGTT 57.014 30.435 0.00 0.00 0.00 2.83
1511 1641 5.986004 TCGGTTTGTTTGTTTGTTTGTTT 57.014 30.435 0.00 0.00 0.00 2.83
1512 1642 5.738370 TCGGTTTGTTTGTTTGTTTGTTTG 58.262 33.333 0.00 0.00 0.00 2.93
1513 1643 5.293569 TCGGTTTGTTTGTTTGTTTGTTTGT 59.706 32.000 0.00 0.00 0.00 2.83
1514 1644 5.617589 CGGTTTGTTTGTTTGTTTGTTTGTC 59.382 36.000 0.00 0.00 0.00 3.18
1561 1691 2.031465 CGTTGTGGGGGCTACGTT 59.969 61.111 0.00 0.00 34.09 3.99
1595 1725 5.572896 GCAATGTCTTTGGGATTTTAAGACG 59.427 40.000 0.00 0.00 46.72 4.18
1596 1726 6.569610 GCAATGTCTTTGGGATTTTAAGACGA 60.570 38.462 0.00 0.00 46.72 4.20
1597 1727 5.934935 TGTCTTTGGGATTTTAAGACGAC 57.065 39.130 0.00 0.00 46.72 4.34
1629 1759 1.635663 AAATCGGTGCTTCGCTTCCG 61.636 55.000 13.48 13.48 43.28 4.30
1661 1791 8.804743 CAGCTGCAAAAATCAAGTGATTATTAG 58.195 33.333 0.00 4.00 43.41 1.73
1662 1792 8.526147 AGCTGCAAAAATCAAGTGATTATTAGT 58.474 29.630 6.95 0.00 43.41 2.24
1663 1793 9.787532 GCTGCAAAAATCAAGTGATTATTAGTA 57.212 29.630 6.95 0.00 43.41 1.82
1750 1880 6.070251 TGTCTGCACTTGAGAATCCCTTTATA 60.070 38.462 0.00 0.00 0.00 0.98
1769 1899 4.430765 CGTAACTCGCCACCCGCT 62.431 66.667 0.00 0.00 36.73 5.52
1770 1900 2.508663 GTAACTCGCCACCCGCTC 60.509 66.667 0.00 0.00 36.73 5.03
1771 1901 2.678934 TAACTCGCCACCCGCTCT 60.679 61.111 0.00 0.00 36.73 4.09
1772 1902 2.707849 TAACTCGCCACCCGCTCTC 61.708 63.158 0.00 0.00 36.73 3.20
1774 1904 4.200283 CTCGCCACCCGCTCTCTC 62.200 72.222 0.00 0.00 36.73 3.20
1775 1905 4.742649 TCGCCACCCGCTCTCTCT 62.743 66.667 0.00 0.00 36.73 3.10
1776 1906 4.200283 CGCCACCCGCTCTCTCTC 62.200 72.222 0.00 0.00 34.21 3.20
1777 1907 2.757917 GCCACCCGCTCTCTCTCT 60.758 66.667 0.00 0.00 0.00 3.10
1778 1908 2.781158 GCCACCCGCTCTCTCTCTC 61.781 68.421 0.00 0.00 0.00 3.20
1779 1909 1.077068 CCACCCGCTCTCTCTCTCT 60.077 63.158 0.00 0.00 0.00 3.10
1791 1921 4.040047 TCTCTCTCTCTCTCTCTGACCAT 58.960 47.826 0.00 0.00 0.00 3.55
2087 2218 8.761497 GGTTTTAACTTTTAATCTTCCACAAGC 58.239 33.333 0.00 0.00 0.00 4.01
2136 2267 7.986889 ACATCCATGATTAACCAAAAATAAGCC 59.013 33.333 0.00 0.00 0.00 4.35
2290 2504 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2291 2505 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2292 2506 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2293 2507 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2294 2508 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2295 2509 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2296 2510 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2297 2511 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2298 2512 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2299 2513 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2300 2514 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2301 2515 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2302 2516 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2303 2517 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2304 2518 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2305 2519 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
2581 2795 5.590530 AATTCACTGTTGTTAACTTGGCA 57.409 34.783 7.22 0.00 0.00 4.92
2643 2858 7.432350 TTCCATTTATTTGGTTTTGCATGAC 57.568 32.000 0.00 0.00 38.01 3.06
2703 2918 8.918961 ACTGAATCTAACTTAATCTCTCGTTG 57.081 34.615 0.00 0.00 0.00 4.10
2715 2930 4.720649 TCTCTCGTTGTATGAGGAAAGG 57.279 45.455 0.00 0.00 32.20 3.11
3041 3256 5.123186 ACAATATACTTGCGCACTAAAAGCA 59.877 36.000 11.12 0.00 39.33 3.91
3072 3287 8.016229 GCTTGATTGACATGATTAGAGCTATTG 58.984 37.037 0.00 0.00 0.00 1.90
3260 3475 8.840200 ATATGACTGAGGGTAGAAAGTAAAGA 57.160 34.615 0.00 0.00 0.00 2.52
3311 3526 4.395959 AAACATAAGGCTATTCGGTCGA 57.604 40.909 0.00 0.00 0.00 4.20
3350 3565 6.603201 CCACAAGGTATTTGACAATATCCTGT 59.397 38.462 6.40 5.17 39.21 4.00
3573 3788 7.956508 TGTTTATGTGTTCAACGTTTACAAG 57.043 32.000 13.01 0.00 0.00 3.16
3577 3793 8.603983 TTATGTGTTCAACGTTTACAAGAAAC 57.396 30.769 13.01 8.30 0.00 2.78
3739 3958 8.669394 GTAACTGTGTGTTAGCCATATTTTTC 57.331 34.615 0.00 0.00 41.29 2.29
3740 3959 6.267496 ACTGTGTGTTAGCCATATTTTTCC 57.733 37.500 0.00 0.00 0.00 3.13
3741 3960 5.185056 ACTGTGTGTTAGCCATATTTTTCCC 59.815 40.000 0.00 0.00 0.00 3.97
3766 3987 6.438763 CCTATATCAAGCCGAAAATGTTTCC 58.561 40.000 0.00 0.00 0.00 3.13
3935 4156 7.849804 TCTATTTAAGCGCTTCTTTCAAGAT 57.150 32.000 28.82 11.11 36.25 2.40
3936 4157 8.268850 TCTATTTAAGCGCTTCTTTCAAGATT 57.731 30.769 28.82 0.00 36.25 2.40
3939 4160 7.435068 TTTAAGCGCTTCTTTCAAGATTAGT 57.565 32.000 28.82 0.00 36.25 2.24
3951 4172 3.007506 TCAAGATTAGTGAACCCTTGCGA 59.992 43.478 0.00 0.00 35.48 5.10
4072 4300 6.479660 TGGTTTTGAAATCATTGCTTCTTGAC 59.520 34.615 0.00 0.00 0.00 3.18
4196 4424 2.431954 ATCCTTCTGTGATTGCCTGG 57.568 50.000 0.00 0.00 0.00 4.45
4282 4510 6.966751 AGGTGGGATGATGGATTATAATCTG 58.033 40.000 21.80 0.00 35.73 2.90
4295 4523 6.201044 GGATTATAATCTGTGTGGACGTCAAG 59.799 42.308 21.80 6.51 35.73 3.02
4302 4530 0.108992 TGTGGACGTCAAGTATCCGC 60.109 55.000 18.91 5.83 42.33 5.54
4303 4531 0.804933 GTGGACGTCAAGTATCCGCC 60.805 60.000 18.91 0.00 37.09 6.13
4377 4606 0.252513 TAGGCCCTGCTAGGAACACA 60.253 55.000 0.00 0.00 37.67 3.72
4441 4670 7.986320 AGTGAATTATCTGAGATCCAAACAGAG 59.014 37.037 0.00 0.00 42.55 3.35
4446 4675 4.096681 TCTGAGATCCAAACAGAGCCTTA 58.903 43.478 0.00 0.00 36.04 2.69
4447 4676 4.081420 TCTGAGATCCAAACAGAGCCTTAC 60.081 45.833 0.00 0.00 36.04 2.34
4448 4677 3.582647 TGAGATCCAAACAGAGCCTTACA 59.417 43.478 0.00 0.00 0.00 2.41
4449 4678 4.187694 GAGATCCAAACAGAGCCTTACAG 58.812 47.826 0.00 0.00 0.00 2.74
4450 4679 3.840666 AGATCCAAACAGAGCCTTACAGA 59.159 43.478 0.00 0.00 0.00 3.41
4451 4680 4.287067 AGATCCAAACAGAGCCTTACAGAA 59.713 41.667 0.00 0.00 0.00 3.02
4452 4681 4.431416 TCCAAACAGAGCCTTACAGAAA 57.569 40.909 0.00 0.00 0.00 2.52
4453 4682 4.787551 TCCAAACAGAGCCTTACAGAAAA 58.212 39.130 0.00 0.00 0.00 2.29
4454 4683 4.821805 TCCAAACAGAGCCTTACAGAAAAG 59.178 41.667 0.00 0.00 0.00 2.27
4455 4684 4.821805 CCAAACAGAGCCTTACAGAAAAGA 59.178 41.667 0.00 0.00 0.00 2.52
4486 4715 9.600432 AAATAATATAGCAGCCCATTTCCTTTA 57.400 29.630 0.00 0.00 0.00 1.85
4487 4716 9.774071 AATAATATAGCAGCCCATTTCCTTTAT 57.226 29.630 0.00 0.00 0.00 1.40
4494 4723 6.383726 AGCAGCCCATTTCCTTTATCATTTAA 59.616 34.615 0.00 0.00 0.00 1.52
4551 4781 6.690704 TTGAAATATAGTCTTATGCGAGCG 57.309 37.500 0.00 0.00 0.00 5.03
4571 4853 5.514279 AGCGCAGTTTGATTATAGATTTGC 58.486 37.500 11.47 0.00 0.00 3.68
4591 4873 6.431198 TTGCTTGATTAGAATAAACGACCC 57.569 37.500 0.00 0.00 0.00 4.46
4592 4874 4.569162 TGCTTGATTAGAATAAACGACCCG 59.431 41.667 0.00 0.00 0.00 5.28
4617 4919 7.709182 CGTTGGTTCAACTATACCATCATCTAA 59.291 37.037 8.80 0.00 43.56 2.10
4632 4934 7.002879 CCATCATCTAAGGAACAGAATCCATT 58.997 38.462 0.00 0.00 42.27 3.16
4656 4958 4.154195 GCGATGTACTGGTGTCTGAAATTT 59.846 41.667 0.00 0.00 0.00 1.82
4657 4959 5.621422 CGATGTACTGGTGTCTGAAATTTG 58.379 41.667 0.00 0.00 0.00 2.32
4658 4960 5.179368 CGATGTACTGGTGTCTGAAATTTGT 59.821 40.000 0.00 0.00 0.00 2.83
4696 5035 3.214328 TCTGAAACTGGAAGGAAGCAAC 58.786 45.455 0.00 0.00 39.30 4.17
4799 5138 1.336440 CCTCATGCTACCAGAGAGACG 59.664 57.143 0.00 0.00 32.04 4.18
4874 5216 1.820519 TGTGCTTCAAATGATCCAGCC 59.179 47.619 3.79 0.00 0.00 4.85
4895 5237 1.770294 GACCAACAGTCCAAACCCAA 58.230 50.000 0.00 0.00 39.84 4.12
4918 5260 2.403252 CACCTACCAGTGTCCCAATC 57.597 55.000 0.00 0.00 32.89 2.67
4919 5261 0.902531 ACCTACCAGTGTCCCAATCG 59.097 55.000 0.00 0.00 0.00 3.34
4920 5262 0.462047 CCTACCAGTGTCCCAATCGC 60.462 60.000 0.00 0.00 0.00 4.58
4921 5263 0.249120 CTACCAGTGTCCCAATCGCA 59.751 55.000 0.00 0.00 0.00 5.10
4935 5277 3.457234 CAATCGCAGAGCATGGTACTTA 58.543 45.455 0.00 0.00 43.63 2.24
4936 5278 2.871182 TCGCAGAGCATGGTACTTAG 57.129 50.000 0.00 0.00 0.00 2.18
4937 5279 1.409064 TCGCAGAGCATGGTACTTAGG 59.591 52.381 0.00 0.00 0.00 2.69
4938 5280 1.587547 GCAGAGCATGGTACTTAGGC 58.412 55.000 0.00 0.00 0.00 3.93
4939 5281 1.811941 GCAGAGCATGGTACTTAGGCC 60.812 57.143 0.00 0.00 0.00 5.19
4940 5282 1.765314 CAGAGCATGGTACTTAGGCCT 59.235 52.381 11.78 11.78 0.00 5.19
4941 5283 2.171448 CAGAGCATGGTACTTAGGCCTT 59.829 50.000 12.58 0.00 0.00 4.35
4942 5284 2.171448 AGAGCATGGTACTTAGGCCTTG 59.829 50.000 12.58 7.32 34.30 3.61
4943 5285 1.916181 AGCATGGTACTTAGGCCTTGT 59.084 47.619 12.58 13.69 33.87 3.16
4944 5286 3.112263 AGCATGGTACTTAGGCCTTGTA 58.888 45.455 12.58 12.55 33.87 2.41
4945 5287 3.118371 AGCATGGTACTTAGGCCTTGTAC 60.118 47.826 27.21 27.21 36.70 2.90
4946 5288 3.370103 GCATGGTACTTAGGCCTTGTACA 60.370 47.826 31.73 23.51 38.50 2.90
4947 5289 4.839121 CATGGTACTTAGGCCTTGTACAA 58.161 43.478 31.73 26.80 38.50 2.41
4948 5290 5.437060 CATGGTACTTAGGCCTTGTACAAT 58.563 41.667 31.73 27.45 38.50 2.71
4949 5291 4.839121 TGGTACTTAGGCCTTGTACAATG 58.161 43.478 31.73 7.68 38.50 2.82
4950 5292 3.626217 GGTACTTAGGCCTTGTACAATGC 59.374 47.826 31.73 23.06 38.50 3.56
4951 5293 3.721087 ACTTAGGCCTTGTACAATGCT 57.279 42.857 27.69 18.67 33.37 3.79
4952 5294 4.837093 ACTTAGGCCTTGTACAATGCTA 57.163 40.909 27.69 17.89 33.37 3.49
4953 5295 4.770795 ACTTAGGCCTTGTACAATGCTAG 58.229 43.478 27.69 23.38 33.37 3.42
4954 5296 2.717639 AGGCCTTGTACAATGCTAGG 57.282 50.000 27.69 18.10 33.37 3.02
4955 5297 1.916181 AGGCCTTGTACAATGCTAGGT 59.084 47.619 27.69 12.79 33.37 3.08
4956 5298 2.017049 GGCCTTGTACAATGCTAGGTG 58.983 52.381 27.69 7.79 33.37 4.00
4957 5299 1.401905 GCCTTGTACAATGCTAGGTGC 59.598 52.381 23.62 7.87 43.25 5.01
4958 5300 2.941415 GCCTTGTACAATGCTAGGTGCT 60.941 50.000 23.62 0.00 43.37 4.40
4959 5301 3.347216 CCTTGTACAATGCTAGGTGCTT 58.653 45.455 9.13 0.00 43.37 3.91
4960 5302 4.513442 CCTTGTACAATGCTAGGTGCTTA 58.487 43.478 9.13 0.00 43.37 3.09
4961 5303 4.941263 CCTTGTACAATGCTAGGTGCTTAA 59.059 41.667 9.13 0.00 43.37 1.85
4962 5304 5.065218 CCTTGTACAATGCTAGGTGCTTAAG 59.935 44.000 9.13 0.00 43.37 1.85
4963 5305 4.513442 TGTACAATGCTAGGTGCTTAAGG 58.487 43.478 4.29 0.00 43.37 2.69
4964 5306 4.224147 TGTACAATGCTAGGTGCTTAAGGA 59.776 41.667 4.29 0.00 43.37 3.36
4965 5307 3.878778 ACAATGCTAGGTGCTTAAGGAG 58.121 45.455 4.29 0.00 43.37 3.69
4966 5308 3.209410 CAATGCTAGGTGCTTAAGGAGG 58.791 50.000 4.29 0.00 43.37 4.30
4967 5309 1.952621 TGCTAGGTGCTTAAGGAGGT 58.047 50.000 4.29 0.00 43.37 3.85
4968 5310 1.555075 TGCTAGGTGCTTAAGGAGGTG 59.445 52.381 4.29 0.00 43.37 4.00
4969 5311 1.744114 GCTAGGTGCTTAAGGAGGTGC 60.744 57.143 4.29 0.43 38.95 5.01
4970 5312 0.909623 TAGGTGCTTAAGGAGGTGCC 59.090 55.000 4.29 0.00 0.00 5.01
4984 5326 5.578005 GGAGGTGCCTAGAAAAATAAACC 57.422 43.478 0.00 0.00 0.00 3.27
4985 5327 5.014202 GGAGGTGCCTAGAAAAATAAACCA 58.986 41.667 0.00 0.00 0.00 3.67
4986 5328 5.105877 GGAGGTGCCTAGAAAAATAAACCAC 60.106 44.000 0.00 0.00 0.00 4.16
4987 5329 5.641155 AGGTGCCTAGAAAAATAAACCACT 58.359 37.500 0.00 0.00 0.00 4.00
4988 5330 6.075315 AGGTGCCTAGAAAAATAAACCACTT 58.925 36.000 0.00 0.00 0.00 3.16
4989 5331 6.553476 AGGTGCCTAGAAAAATAAACCACTTT 59.447 34.615 0.00 0.00 0.00 2.66
4990 5332 6.866770 GGTGCCTAGAAAAATAAACCACTTTC 59.133 38.462 0.00 0.00 0.00 2.62
4991 5333 7.255836 GGTGCCTAGAAAAATAAACCACTTTCT 60.256 37.037 0.00 0.00 40.36 2.52
4992 5334 8.141909 GTGCCTAGAAAAATAAACCACTTTCTT 58.858 33.333 1.63 0.00 38.65 2.52
4993 5335 8.700973 TGCCTAGAAAAATAAACCACTTTCTTT 58.299 29.630 1.63 0.00 38.65 2.52
5005 5347 8.900511 AAACCACTTTCTTTAAGTTAAACGTC 57.099 30.769 3.88 0.00 44.73 4.34
5006 5348 7.854557 ACCACTTTCTTTAAGTTAAACGTCT 57.145 32.000 3.88 0.00 44.73 4.18
5007 5349 8.947055 ACCACTTTCTTTAAGTTAAACGTCTA 57.053 30.769 3.88 0.00 44.73 2.59
5008 5350 9.551734 ACCACTTTCTTTAAGTTAAACGTCTAT 57.448 29.630 3.88 0.00 44.73 1.98
5011 5353 9.993454 ACTTTCTTTAAGTTAAACGTCTATCCT 57.007 29.630 3.88 0.00 44.73 3.24
5013 5355 9.768662 TTTCTTTAAGTTAAACGTCTATCCTGT 57.231 29.630 3.88 0.00 0.00 4.00
5015 5357 9.846248 TCTTTAAGTTAAACGTCTATCCTGTAC 57.154 33.333 3.88 0.00 0.00 2.90
5016 5358 8.673626 TTTAAGTTAAACGTCTATCCTGTACG 57.326 34.615 3.88 0.00 42.17 3.67
5017 5359 6.500684 AAGTTAAACGTCTATCCTGTACGA 57.499 37.500 0.00 0.00 39.80 3.43
5018 5360 6.500684 AGTTAAACGTCTATCCTGTACGAA 57.499 37.500 0.00 0.00 39.80 3.85
5019 5361 7.093322 AGTTAAACGTCTATCCTGTACGAAT 57.907 36.000 0.00 0.00 39.80 3.34
5020 5362 8.213518 AGTTAAACGTCTATCCTGTACGAATA 57.786 34.615 0.00 0.00 39.80 1.75
5021 5363 8.341173 AGTTAAACGTCTATCCTGTACGAATAG 58.659 37.037 0.00 3.70 39.80 1.73
5022 5364 6.690194 AAACGTCTATCCTGTACGAATAGT 57.310 37.500 0.00 0.00 39.80 2.12
5023 5365 5.921004 ACGTCTATCCTGTACGAATAGTC 57.079 43.478 0.00 3.87 39.80 2.59
5024 5366 5.363101 ACGTCTATCCTGTACGAATAGTCA 58.637 41.667 0.00 0.00 39.80 3.41
5025 5367 5.236047 ACGTCTATCCTGTACGAATAGTCAC 59.764 44.000 0.00 2.18 39.80 3.67
5026 5368 5.333952 CGTCTATCCTGTACGAATAGTCACC 60.334 48.000 0.00 0.00 38.89 4.02
5027 5369 3.984508 ATCCTGTACGAATAGTCACCG 57.015 47.619 0.00 0.00 0.00 4.94
5028 5370 2.019249 TCCTGTACGAATAGTCACCGG 58.981 52.381 0.00 0.00 0.00 5.28
5029 5371 1.747355 CCTGTACGAATAGTCACCGGT 59.253 52.381 0.00 0.00 0.00 5.28
5030 5372 2.479049 CCTGTACGAATAGTCACCGGTG 60.479 54.545 29.26 29.26 0.00 4.94
5031 5373 1.135315 TGTACGAATAGTCACCGGTGC 60.135 52.381 30.25 23.26 0.00 5.01
5032 5374 1.133790 GTACGAATAGTCACCGGTGCT 59.866 52.381 30.25 28.29 0.00 4.40
5033 5375 0.606604 ACGAATAGTCACCGGTGCTT 59.393 50.000 30.25 21.05 0.00 3.91
5034 5376 1.820519 ACGAATAGTCACCGGTGCTTA 59.179 47.619 30.25 22.45 0.00 3.09
5035 5377 2.231964 ACGAATAGTCACCGGTGCTTAA 59.768 45.455 30.25 15.43 0.00 1.85
5036 5378 3.255725 CGAATAGTCACCGGTGCTTAAA 58.744 45.455 30.25 14.75 0.00 1.52
5037 5379 3.306166 CGAATAGTCACCGGTGCTTAAAG 59.694 47.826 30.25 16.41 0.00 1.85
5038 5380 4.501071 GAATAGTCACCGGTGCTTAAAGA 58.499 43.478 30.25 14.07 0.00 2.52
5039 5381 2.922740 AGTCACCGGTGCTTAAAGAA 57.077 45.000 30.25 7.02 0.00 2.52
5040 5382 3.202829 AGTCACCGGTGCTTAAAGAAA 57.797 42.857 30.25 6.19 0.00 2.52
5041 5383 3.547746 AGTCACCGGTGCTTAAAGAAAA 58.452 40.909 30.25 5.36 0.00 2.29
5042 5384 3.314357 AGTCACCGGTGCTTAAAGAAAAC 59.686 43.478 30.25 17.65 0.00 2.43
5043 5385 2.619646 TCACCGGTGCTTAAAGAAAACC 59.380 45.455 30.25 0.00 0.00 3.27
5044 5386 2.621526 CACCGGTGCTTAAAGAAAACCT 59.378 45.455 24.02 0.00 0.00 3.50
5045 5387 3.816523 CACCGGTGCTTAAAGAAAACCTA 59.183 43.478 24.02 0.00 0.00 3.08
5046 5388 4.070009 ACCGGTGCTTAAAGAAAACCTAG 58.930 43.478 6.12 0.00 0.00 3.02
5047 5389 4.070009 CCGGTGCTTAAAGAAAACCTAGT 58.930 43.478 0.00 0.00 0.00 2.57
5048 5390 4.517832 CCGGTGCTTAAAGAAAACCTAGTT 59.482 41.667 0.00 0.00 0.00 2.24
5049 5391 5.009310 CCGGTGCTTAAAGAAAACCTAGTTT 59.991 40.000 0.00 0.00 37.34 2.66
5050 5392 6.205270 CCGGTGCTTAAAGAAAACCTAGTTTA 59.795 38.462 0.00 0.00 34.43 2.01
5051 5393 7.094506 CCGGTGCTTAAAGAAAACCTAGTTTAT 60.095 37.037 0.00 0.00 34.43 1.40
5052 5394 8.294577 CGGTGCTTAAAGAAAACCTAGTTTATT 58.705 33.333 0.00 0.00 34.43 1.40
5053 5395 9.976511 GGTGCTTAAAGAAAACCTAGTTTATTT 57.023 29.630 4.49 4.49 34.43 1.40
5061 5403 8.112016 AGAAAACCTAGTTTATTTCTCCAAGC 57.888 34.615 0.00 0.00 37.52 4.01
5062 5404 7.724061 AGAAAACCTAGTTTATTTCTCCAAGCA 59.276 33.333 0.00 0.00 37.52 3.91
5063 5405 6.819397 AACCTAGTTTATTTCTCCAAGCAC 57.181 37.500 0.00 0.00 0.00 4.40
5064 5406 5.254115 ACCTAGTTTATTTCTCCAAGCACC 58.746 41.667 0.00 0.00 0.00 5.01
5065 5407 5.014228 ACCTAGTTTATTTCTCCAAGCACCT 59.986 40.000 0.00 0.00 0.00 4.00
5066 5408 5.586643 CCTAGTTTATTTCTCCAAGCACCTC 59.413 44.000 0.00 0.00 0.00 3.85
5067 5409 4.336280 AGTTTATTTCTCCAAGCACCTCC 58.664 43.478 0.00 0.00 0.00 4.30
5068 5410 3.366052 TTATTTCTCCAAGCACCTCCC 57.634 47.619 0.00 0.00 0.00 4.30
5069 5411 1.075601 ATTTCTCCAAGCACCTCCCA 58.924 50.000 0.00 0.00 0.00 4.37
5070 5412 1.075601 TTTCTCCAAGCACCTCCCAT 58.924 50.000 0.00 0.00 0.00 4.00
5071 5413 1.965414 TTCTCCAAGCACCTCCCATA 58.035 50.000 0.00 0.00 0.00 2.74
5072 5414 1.965414 TCTCCAAGCACCTCCCATAA 58.035 50.000 0.00 0.00 0.00 1.90
5073 5415 1.839994 TCTCCAAGCACCTCCCATAAG 59.160 52.381 0.00 0.00 0.00 1.73
5074 5416 0.255890 TCCAAGCACCTCCCATAAGC 59.744 55.000 0.00 0.00 0.00 3.09
5075 5417 0.034186 CCAAGCACCTCCCATAAGCA 60.034 55.000 0.00 0.00 0.00 3.91
5076 5418 1.098050 CAAGCACCTCCCATAAGCAC 58.902 55.000 0.00 0.00 0.00 4.40
5077 5419 0.034089 AAGCACCTCCCATAAGCACC 60.034 55.000 0.00 0.00 0.00 5.01
5078 5420 0.916358 AGCACCTCCCATAAGCACCT 60.916 55.000 0.00 0.00 0.00 4.00
5079 5421 0.034089 GCACCTCCCATAAGCACCTT 60.034 55.000 0.00 0.00 0.00 3.50
5080 5422 1.755179 CACCTCCCATAAGCACCTTG 58.245 55.000 0.00 0.00 0.00 3.61
5081 5423 0.034089 ACCTCCCATAAGCACCTTGC 60.034 55.000 0.00 0.00 45.46 4.01
5100 5442 3.081061 TGCATTGTACAAGGCCTTACAG 58.919 45.455 34.56 8.91 46.35 2.74
5110 5452 0.865769 GGCCTTACAGTGTCACGTTG 59.134 55.000 0.00 0.00 0.00 4.10
5111 5453 1.578583 GCCTTACAGTGTCACGTTGT 58.421 50.000 0.00 3.62 0.00 3.32
5157 5499 4.225497 GCTGCTGCGTTTAGGGAT 57.775 55.556 0.00 0.00 0.00 3.85
5158 5500 1.723870 GCTGCTGCGTTTAGGGATG 59.276 57.895 0.00 0.00 0.00 3.51
5159 5501 1.723870 CTGCTGCGTTTAGGGATGC 59.276 57.895 0.00 0.00 0.00 3.91
5160 5502 1.002746 TGCTGCGTTTAGGGATGCA 60.003 52.632 0.00 0.00 39.12 3.96
5161 5503 0.607762 TGCTGCGTTTAGGGATGCAA 60.608 50.000 0.00 0.00 40.73 4.08
5165 5507 1.366111 GCGTTTAGGGATGCAAGCGA 61.366 55.000 0.00 0.00 31.05 4.93
5166 5508 0.373716 CGTTTAGGGATGCAAGCGAC 59.626 55.000 0.00 0.00 31.05 5.19
5167 5509 0.733150 GTTTAGGGATGCAAGCGACC 59.267 55.000 0.00 0.00 0.00 4.79
5168 5510 0.742990 TTTAGGGATGCAAGCGACCG 60.743 55.000 0.00 0.00 0.00 4.79
5169 5511 1.895020 TTAGGGATGCAAGCGACCGT 61.895 55.000 0.00 7.43 0.00 4.83
5170 5512 2.292794 TAGGGATGCAAGCGACCGTC 62.293 60.000 0.00 0.00 0.00 4.79
5171 5513 3.195698 GGATGCAAGCGACCGTCC 61.196 66.667 0.00 0.00 0.00 4.79
5172 5514 3.195698 GATGCAAGCGACCGTCCC 61.196 66.667 0.00 0.00 0.00 4.46
5173 5515 3.950794 GATGCAAGCGACCGTCCCA 62.951 63.158 0.00 0.00 0.00 4.37
5174 5516 3.329542 ATGCAAGCGACCGTCCCAT 62.330 57.895 0.00 0.00 0.00 4.00
5175 5517 3.499737 GCAAGCGACCGTCCCATG 61.500 66.667 0.00 0.00 0.00 3.66
5176 5518 2.047274 CAAGCGACCGTCCCATGT 60.047 61.111 0.00 0.00 0.00 3.21
5177 5519 1.216977 CAAGCGACCGTCCCATGTA 59.783 57.895 0.00 0.00 0.00 2.29
5183 5525 2.095978 GACCGTCCCATGTATCCCCG 62.096 65.000 0.00 0.00 0.00 5.73
5205 5547 4.271291 CGAAACTAGCAAATTAGCTCCCTC 59.729 45.833 0.00 0.00 45.26 4.30
5219 5561 2.612115 CCTCTGGCCTCCACCCTT 60.612 66.667 3.32 0.00 0.00 3.95
5221 5563 2.610859 TCTGGCCTCCACCCTTCC 60.611 66.667 3.32 0.00 0.00 3.46
5244 5586 1.641192 ACTTCCATTTTCCTCCTCCCC 59.359 52.381 0.00 0.00 0.00 4.81
5251 5593 0.196118 TTTCCTCCTCCCCAACCTCT 59.804 55.000 0.00 0.00 0.00 3.69
5252 5594 1.098589 TTCCTCCTCCCCAACCTCTA 58.901 55.000 0.00 0.00 0.00 2.43
5271 5616 1.376649 AAGCTTCACCCTTCTCCCAT 58.623 50.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.250945 TTGGGGAACGTAGCATGCAA 60.251 50.000 21.98 0.00 0.00 4.08
1 2 0.958382 GTTGGGGAACGTAGCATGCA 60.958 55.000 21.98 2.77 0.00 3.96
2 3 0.958382 TGTTGGGGAACGTAGCATGC 60.958 55.000 10.51 10.51 0.00 4.06
3 4 1.468520 CTTGTTGGGGAACGTAGCATG 59.531 52.381 0.00 0.00 0.00 4.06
4 5 1.349688 TCTTGTTGGGGAACGTAGCAT 59.650 47.619 0.00 0.00 0.00 3.79
5 6 0.759959 TCTTGTTGGGGAACGTAGCA 59.240 50.000 0.00 0.00 0.00 3.49
6 7 2.007608 GATCTTGTTGGGGAACGTAGC 58.992 52.381 0.00 0.00 0.00 3.58
7 8 2.268298 CGATCTTGTTGGGGAACGTAG 58.732 52.381 0.00 0.00 0.00 3.51
8 9 1.066716 CCGATCTTGTTGGGGAACGTA 60.067 52.381 0.00 0.00 0.00 3.57
9 10 0.321298 CCGATCTTGTTGGGGAACGT 60.321 55.000 0.00 0.00 0.00 3.99
10 11 0.036765 TCCGATCTTGTTGGGGAACG 60.037 55.000 0.00 0.00 31.55 3.95
11 12 1.679032 CCTCCGATCTTGTTGGGGAAC 60.679 57.143 0.00 0.00 32.95 3.62
12 13 0.618458 CCTCCGATCTTGTTGGGGAA 59.382 55.000 0.00 0.00 32.95 3.97
13 14 1.271840 CCCTCCGATCTTGTTGGGGA 61.272 60.000 0.00 0.00 32.95 4.81
14 15 1.224592 CCCTCCGATCTTGTTGGGG 59.775 63.158 0.00 0.00 31.55 4.96
15 16 0.179000 CTCCCTCCGATCTTGTTGGG 59.821 60.000 0.00 0.00 36.14 4.12
16 17 0.179000 CCTCCCTCCGATCTTGTTGG 59.821 60.000 0.00 0.00 0.00 3.77
17 18 0.462759 GCCTCCCTCCGATCTTGTTG 60.463 60.000 0.00 0.00 0.00 3.33
18 19 0.909610 TGCCTCCCTCCGATCTTGTT 60.910 55.000 0.00 0.00 0.00 2.83
19 20 1.306141 TGCCTCCCTCCGATCTTGT 60.306 57.895 0.00 0.00 0.00 3.16
20 21 1.445095 CTGCCTCCCTCCGATCTTG 59.555 63.158 0.00 0.00 0.00 3.02
21 22 1.764054 CCTGCCTCCCTCCGATCTT 60.764 63.158 0.00 0.00 0.00 2.40
22 23 2.123077 CCTGCCTCCCTCCGATCT 60.123 66.667 0.00 0.00 0.00 2.75
23 24 2.123251 TCCTGCCTCCCTCCGATC 60.123 66.667 0.00 0.00 0.00 3.69
24 25 2.123077 CTCCTGCCTCCCTCCGAT 60.123 66.667 0.00 0.00 0.00 4.18
25 26 4.465446 CCTCCTGCCTCCCTCCGA 62.465 72.222 0.00 0.00 0.00 4.55
26 27 4.465446 TCCTCCTGCCTCCCTCCG 62.465 72.222 0.00 0.00 0.00 4.63
48 49 4.036734 TGCACAAAGTCCATCAAACTCTTC 59.963 41.667 0.00 0.00 0.00 2.87
63 64 2.667481 CCGCACCATAAATTGCACAAAG 59.333 45.455 0.00 0.00 38.76 2.77
66 67 1.252175 ACCGCACCATAAATTGCACA 58.748 45.000 0.00 0.00 38.76 4.57
67 68 2.422127 ACTACCGCACCATAAATTGCAC 59.578 45.455 0.00 0.00 38.76 4.57
99 100 1.168407 AGGTTCGTCCGTCAAGTCGA 61.168 55.000 0.00 0.00 41.99 4.20
104 105 2.738480 CCCAGGTTCGTCCGTCAA 59.262 61.111 0.00 0.00 41.99 3.18
107 108 2.798148 GAATGCCCAGGTTCGTCCGT 62.798 60.000 0.00 0.00 41.99 4.69
109 120 0.744771 GAGAATGCCCAGGTTCGTCC 60.745 60.000 0.00 0.00 0.00 4.79
114 125 2.224621 CGGATATGAGAATGCCCAGGTT 60.225 50.000 0.00 0.00 0.00 3.50
115 126 1.349026 CGGATATGAGAATGCCCAGGT 59.651 52.381 0.00 0.00 0.00 4.00
118 129 0.036732 GGCGGATATGAGAATGCCCA 59.963 55.000 0.00 0.00 36.51 5.36
127 138 2.039746 CCCAAATGTAGGGCGGATATGA 59.960 50.000 0.00 0.00 39.96 2.15
129 140 2.879103 CCCAAATGTAGGGCGGATAT 57.121 50.000 0.00 0.00 39.96 1.63
141 152 2.889045 CCACTCATATCCAGCCCAAATG 59.111 50.000 0.00 0.00 0.00 2.32
142 153 2.515429 ACCACTCATATCCAGCCCAAAT 59.485 45.455 0.00 0.00 0.00 2.32
152 163 1.598130 GGCCGGCACCACTCATATC 60.598 63.158 30.85 1.22 0.00 1.63
177 188 3.359523 GAACGGGCCCCAAACGTC 61.360 66.667 18.66 0.33 40.31 4.34
247 259 2.361104 GCCCGCCTCAAATGTCCA 60.361 61.111 0.00 0.00 0.00 4.02
251 263 1.660560 CCTCAAGCCCGCCTCAAATG 61.661 60.000 0.00 0.00 0.00 2.32
252 264 1.379044 CCTCAAGCCCGCCTCAAAT 60.379 57.895 0.00 0.00 0.00 2.32
254 266 4.722700 GCCTCAAGCCCGCCTCAA 62.723 66.667 0.00 0.00 34.35 3.02
339 351 6.920210 CCTCTCTAAACAAGGCTTTCAAAAAG 59.080 38.462 0.00 0.00 0.00 2.27
350 362 6.094186 GCTATGGAAAACCTCTCTAAACAAGG 59.906 42.308 0.00 0.00 36.21 3.61
444 464 5.934043 CCCTCTGATGCATATTAATTGTCGA 59.066 40.000 0.00 0.00 0.00 4.20
459 479 6.423302 CGATTTTCATTACTCTCCCTCTGATG 59.577 42.308 0.00 0.00 0.00 3.07
462 482 5.907207 TCGATTTTCATTACTCTCCCTCTG 58.093 41.667 0.00 0.00 0.00 3.35
524 544 3.265791 GCTTGTCTCATTCATCGGAAGT 58.734 45.455 0.00 0.00 36.25 3.01
582 653 2.114670 CAACTGCAGGTATGGGCCG 61.115 63.158 19.93 0.00 0.00 6.13
589 660 0.400213 CTTGACCCCAACTGCAGGTA 59.600 55.000 19.93 0.00 32.81 3.08
633 704 2.009774 GCACTGTGTCAACTCTGTGTT 58.990 47.619 9.86 0.00 39.68 3.32
639 710 1.594862 GTCTGTGCACTGTGTCAACTC 59.405 52.381 19.41 0.00 0.00 3.01
647 718 0.459585 AAACGTCGTCTGTGCACTGT 60.460 50.000 19.41 2.39 0.00 3.55
651 722 1.205657 GAGAAAACGTCGTCTGTGCA 58.794 50.000 0.00 0.00 0.00 4.57
669 740 0.693092 CCGGTAGGAAAGGGGATGGA 60.693 60.000 0.00 0.00 41.02 3.41
672 743 2.440817 CGCCGGTAGGAAAGGGGAT 61.441 63.158 1.90 0.00 41.02 3.85
692 763 1.352156 GGTGACGATGAGGAACGTGC 61.352 60.000 0.00 0.00 42.74 5.34
717 788 0.967380 CAGATGAAGGTGGGGCCAAC 60.967 60.000 4.39 3.29 40.61 3.77
718 789 1.139498 TCAGATGAAGGTGGGGCCAA 61.139 55.000 4.39 0.00 40.61 4.52
732 803 3.771160 GGACCCGCCGTGTCAGAT 61.771 66.667 1.50 0.00 34.36 2.90
763 834 4.489771 GCGGGGTGTCCTGGGATG 62.490 72.222 0.00 0.00 39.84 3.51
764 835 4.741239 AGCGGGGTGTCCTGGGAT 62.741 66.667 0.00 0.00 39.84 3.85
771 852 1.255667 TAAGAGGTGAGCGGGGTGTC 61.256 60.000 0.00 0.00 0.00 3.67
779 860 4.119442 TCACGGTAATTAAGAGGTGAGC 57.881 45.455 5.53 0.00 31.45 4.26
780 861 4.508124 GCATCACGGTAATTAAGAGGTGAG 59.492 45.833 12.00 7.64 37.76 3.51
781 862 4.439057 GCATCACGGTAATTAAGAGGTGA 58.561 43.478 9.94 9.94 38.59 4.02
782 863 3.560068 GGCATCACGGTAATTAAGAGGTG 59.440 47.826 0.00 0.00 0.00 4.00
783 864 3.199071 TGGCATCACGGTAATTAAGAGGT 59.801 43.478 0.00 0.00 0.00 3.85
785 866 6.183360 ACAAATGGCATCACGGTAATTAAGAG 60.183 38.462 0.00 0.00 0.00 2.85
786 867 5.650266 ACAAATGGCATCACGGTAATTAAGA 59.350 36.000 0.00 0.00 0.00 2.10
787 868 5.890334 ACAAATGGCATCACGGTAATTAAG 58.110 37.500 0.00 0.00 0.00 1.85
788 869 5.906113 ACAAATGGCATCACGGTAATTAA 57.094 34.783 0.00 0.00 0.00 1.40
796 890 4.164822 AGAAAGAACAAATGGCATCACG 57.835 40.909 0.00 0.00 0.00 4.35
821 915 4.340617 AGCCATTCTCGGGAATAACAAAA 58.659 39.130 10.90 0.00 39.87 2.44
855 951 3.966026 CTCGGTCGGGACTTGCGAC 62.966 68.421 0.00 0.00 0.00 5.19
880 976 3.119814 GCGGAGAAGGATGGAAAAGAAAC 60.120 47.826 0.00 0.00 0.00 2.78
917 1019 0.463833 GCCTTTTGGGATCGATCGGT 60.464 55.000 18.81 8.34 40.82 4.69
1067 1179 3.666253 GAAACGCCAACACCCCGG 61.666 66.667 0.00 0.00 0.00 5.73
1077 1189 2.186076 CTGTACGAGATCAGAAACGCC 58.814 52.381 0.00 0.00 34.02 5.68
1083 1195 4.131464 GAGCACGCTGTACGAGATCAGA 62.131 54.545 0.00 0.00 45.37 3.27
1131 1246 3.003173 CCTCCTCCTCCGTTGCCA 61.003 66.667 0.00 0.00 0.00 4.92
1503 1633 4.323417 ACAGACAGACAGACAAACAAACA 58.677 39.130 0.00 0.00 0.00 2.83
1504 1634 4.946784 ACAGACAGACAGACAAACAAAC 57.053 40.909 0.00 0.00 0.00 2.93
1505 1635 5.240623 ACAAACAGACAGACAGACAAACAAA 59.759 36.000 0.00 0.00 0.00 2.83
1506 1636 4.759693 ACAAACAGACAGACAGACAAACAA 59.240 37.500 0.00 0.00 0.00 2.83
1507 1637 4.323417 ACAAACAGACAGACAGACAAACA 58.677 39.130 0.00 0.00 0.00 2.83
1508 1638 4.946784 ACAAACAGACAGACAGACAAAC 57.053 40.909 0.00 0.00 0.00 2.93
1509 1639 4.759693 ACAACAAACAGACAGACAGACAAA 59.240 37.500 0.00 0.00 0.00 2.83
1510 1640 4.154015 CACAACAAACAGACAGACAGACAA 59.846 41.667 0.00 0.00 0.00 3.18
1511 1641 3.684305 CACAACAAACAGACAGACAGACA 59.316 43.478 0.00 0.00 0.00 3.41
1512 1642 3.485877 GCACAACAAACAGACAGACAGAC 60.486 47.826 0.00 0.00 0.00 3.51
1513 1643 2.677836 GCACAACAAACAGACAGACAGA 59.322 45.455 0.00 0.00 0.00 3.41
1514 1644 2.419673 TGCACAACAAACAGACAGACAG 59.580 45.455 0.00 0.00 0.00 3.51
1595 1725 5.245850 CACCGATTTTCGTTTTATCTCGTC 58.754 41.667 0.00 0.00 38.40 4.20
1596 1726 4.435121 GCACCGATTTTCGTTTTATCTCGT 60.435 41.667 0.00 0.00 38.40 4.18
1597 1727 4.019867 GCACCGATTTTCGTTTTATCTCG 58.980 43.478 0.00 0.00 38.40 4.04
1750 1880 4.060038 CGGGTGGCGAGTTACGGT 62.060 66.667 0.00 0.00 42.83 4.83
1768 1898 3.452264 TGGTCAGAGAGAGAGAGAGAGAG 59.548 52.174 0.00 0.00 0.00 3.20
1769 1899 3.449918 TGGTCAGAGAGAGAGAGAGAGA 58.550 50.000 0.00 0.00 0.00 3.10
1770 1900 3.912496 TGGTCAGAGAGAGAGAGAGAG 57.088 52.381 0.00 0.00 0.00 3.20
1771 1901 3.523157 ACATGGTCAGAGAGAGAGAGAGA 59.477 47.826 0.00 0.00 0.00 3.10
1772 1902 3.879295 GACATGGTCAGAGAGAGAGAGAG 59.121 52.174 0.00 0.00 32.09 3.20
1773 1903 3.371487 GGACATGGTCAGAGAGAGAGAGA 60.371 52.174 0.00 0.00 33.68 3.10
1774 1904 2.951642 GGACATGGTCAGAGAGAGAGAG 59.048 54.545 0.00 0.00 33.68 3.20
1775 1905 2.580322 AGGACATGGTCAGAGAGAGAGA 59.420 50.000 0.00 0.00 33.68 3.10
1776 1906 2.689471 CAGGACATGGTCAGAGAGAGAG 59.311 54.545 0.00 0.00 33.68 3.20
1777 1907 2.732763 CAGGACATGGTCAGAGAGAGA 58.267 52.381 0.00 0.00 33.68 3.10
1778 1908 1.136695 GCAGGACATGGTCAGAGAGAG 59.863 57.143 0.00 0.00 33.68 3.20
1779 1909 1.189752 GCAGGACATGGTCAGAGAGA 58.810 55.000 0.00 0.00 33.68 3.10
1791 1921 1.609208 GAAGGCAAGAAAGCAGGACA 58.391 50.000 0.00 0.00 35.83 4.02
2087 2218 8.722480 TGTCTGGATGTCAAATCATAAAGTAG 57.278 34.615 0.00 0.00 0.00 2.57
2136 2267 4.690280 ACCAGCAACAACTTTTCTTGTTTG 59.310 37.500 0.00 0.00 41.47 2.93
2290 2504 2.370189 GGAGAGGGAGAGAGAGAGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
2291 2505 2.408565 GGAGAGGGAGAGAGAGAGAGA 58.591 57.143 0.00 0.00 0.00 3.10
2292 2506 1.421646 GGGAGAGGGAGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
2293 2507 1.010793 AGGGAGAGGGAGAGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
2294 2508 1.421646 GAGGGAGAGGGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
2295 2509 1.518367 GAGGGAGAGGGAGAGAGAGA 58.482 60.000 0.00 0.00 0.00 3.10
2296 2510 0.478507 GGAGGGAGAGGGAGAGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
2297 2511 0.253868 TGGAGGGAGAGGGAGAGAGA 60.254 60.000 0.00 0.00 0.00 3.10
2298 2512 0.859760 ATGGAGGGAGAGGGAGAGAG 59.140 60.000 0.00 0.00 0.00 3.20
2299 2513 0.560193 CATGGAGGGAGAGGGAGAGA 59.440 60.000 0.00 0.00 0.00 3.10
2300 2514 0.264359 ACATGGAGGGAGAGGGAGAG 59.736 60.000 0.00 0.00 0.00 3.20
2301 2515 0.031716 CACATGGAGGGAGAGGGAGA 60.032 60.000 0.00 0.00 0.00 3.71
2302 2516 0.326048 ACACATGGAGGGAGAGGGAG 60.326 60.000 0.00 0.00 0.00 4.30
2303 2517 0.119155 AACACATGGAGGGAGAGGGA 59.881 55.000 0.00 0.00 0.00 4.20
2304 2518 0.995024 AAACACATGGAGGGAGAGGG 59.005 55.000 0.00 0.00 0.00 4.30
2305 2519 5.131142 AGTTATAAACACATGGAGGGAGAGG 59.869 44.000 0.00 0.00 0.00 3.69
2643 2858 4.796312 CCAAAACGGTAACTGAAACACAAG 59.204 41.667 0.00 0.00 0.00 3.16
2703 2918 5.069781 AGCAGTGTCTATCCTTTCCTCATAC 59.930 44.000 0.00 0.00 0.00 2.39
2715 2930 5.006552 GCAATCTTCTCAAGCAGTGTCTATC 59.993 44.000 0.00 0.00 0.00 2.08
3041 3256 4.771590 AATCATGTCAATCAAGCACGTT 57.228 36.364 0.00 0.00 0.00 3.99
3072 3287 2.298729 TGCATTTTTAAGGGGTGTCAGC 59.701 45.455 0.00 0.00 0.00 4.26
3260 3475 8.030913 ACATAATAGAGAGAAAATAACGGGGT 57.969 34.615 0.00 0.00 0.00 4.95
3350 3565 3.252215 CAGTACGCCCTGAAATTGTTTGA 59.748 43.478 0.00 0.00 34.23 2.69
3707 3926 4.124238 GCTAACACACAGTTACCAACTCA 58.876 43.478 0.00 0.00 40.46 3.41
3735 3954 3.050089 TCGGCTTGATATAGGGGGAAAA 58.950 45.455 0.00 0.00 0.00 2.29
3736 3955 2.696775 TCGGCTTGATATAGGGGGAAA 58.303 47.619 0.00 0.00 0.00 3.13
3738 3957 2.409064 TTCGGCTTGATATAGGGGGA 57.591 50.000 0.00 0.00 0.00 4.81
3739 3958 3.502123 TTTTCGGCTTGATATAGGGGG 57.498 47.619 0.00 0.00 0.00 5.40
3740 3959 4.398319 ACATTTTCGGCTTGATATAGGGG 58.602 43.478 0.00 0.00 0.00 4.79
3741 3960 6.391227 AAACATTTTCGGCTTGATATAGGG 57.609 37.500 0.00 0.00 0.00 3.53
3766 3987 5.535753 AAAAGTTCCAAATCCCAGTCTTG 57.464 39.130 0.00 0.00 0.00 3.02
3935 4156 3.270027 CATCATCGCAAGGGTTCACTAA 58.730 45.455 0.00 0.00 38.47 2.24
3936 4157 2.236146 ACATCATCGCAAGGGTTCACTA 59.764 45.455 0.00 0.00 38.47 2.74
3939 4160 1.678728 GGACATCATCGCAAGGGTTCA 60.679 52.381 0.00 0.00 38.47 3.18
3951 4172 4.371624 TTCAAAGTGTCAGGGACATCAT 57.628 40.909 2.02 0.00 44.63 2.45
4072 4300 6.680810 TGACTTTTATTGAGAACCAGCATTG 58.319 36.000 0.00 0.00 0.00 2.82
4282 4510 1.625616 CGGATACTTGACGTCCACAC 58.374 55.000 14.12 0.00 32.23 3.82
4356 4584 1.280998 GTGTTCCTAGCAGGGCCTAAA 59.719 52.381 5.28 0.00 35.59 1.85
4403 4632 9.658799 CTCAGATAATTCACTGGAAAGAGTTAA 57.341 33.333 10.50 0.00 36.43 2.01
4463 4692 8.390143 TGATAAAGGAAATGGGCTGCTATATTA 58.610 33.333 0.00 0.00 0.00 0.98
4466 4695 6.199557 TGATAAAGGAAATGGGCTGCTATA 57.800 37.500 0.00 0.00 0.00 1.31
4551 4781 9.525409 AATCAAGCAAATCTATAATCAAACTGC 57.475 29.630 0.00 0.00 0.00 4.40
4617 4919 2.787473 TCGCAATGGATTCTGTTCCT 57.213 45.000 0.00 0.00 36.68 3.36
4632 4934 1.253100 TCAGACACCAGTACATCGCA 58.747 50.000 0.00 0.00 0.00 5.10
4677 4979 2.951642 CTGTTGCTTCCTTCCAGTTTCA 59.048 45.455 0.00 0.00 0.00 2.69
4678 4980 2.294512 CCTGTTGCTTCCTTCCAGTTTC 59.705 50.000 0.00 0.00 0.00 2.78
4679 4981 2.310538 CCTGTTGCTTCCTTCCAGTTT 58.689 47.619 0.00 0.00 0.00 2.66
4680 4982 1.986882 CCTGTTGCTTCCTTCCAGTT 58.013 50.000 0.00 0.00 0.00 3.16
4681 4983 0.538287 GCCTGTTGCTTCCTTCCAGT 60.538 55.000 0.00 0.00 36.87 4.00
4696 5035 0.952497 AGCTGAACATGACACGCCTG 60.952 55.000 0.00 0.00 0.00 4.85
4799 5138 1.803334 TTGTGTAGGTTGTCCGATGC 58.197 50.000 0.00 0.00 39.05 3.91
4853 5195 2.159282 GGCTGGATCATTTGAAGCACAG 60.159 50.000 0.00 0.00 35.55 3.66
4857 5199 0.383231 CCGGCTGGATCATTTGAAGC 59.617 55.000 5.28 0.00 37.49 3.86
4890 5232 1.975680 CACTGGTAGGTGTAGTTGGGT 59.024 52.381 0.00 0.00 33.04 4.51
4891 5233 1.975680 ACACTGGTAGGTGTAGTTGGG 59.024 52.381 0.00 0.00 46.89 4.12
4917 5259 1.409064 CCTAAGTACCATGCTCTGCGA 59.591 52.381 0.00 0.00 0.00 5.10
4918 5260 1.858091 CCTAAGTACCATGCTCTGCG 58.142 55.000 0.00 0.00 0.00 5.18
4919 5261 1.587547 GCCTAAGTACCATGCTCTGC 58.412 55.000 0.00 0.00 0.00 4.26
4920 5262 1.765314 AGGCCTAAGTACCATGCTCTG 59.235 52.381 1.29 0.00 0.00 3.35
4921 5263 2.171448 CAAGGCCTAAGTACCATGCTCT 59.829 50.000 5.16 0.00 0.00 4.09
4949 5291 1.744114 GCACCTCCTTAAGCACCTAGC 60.744 57.143 0.00 0.00 46.19 3.42
4950 5292 1.134371 GGCACCTCCTTAAGCACCTAG 60.134 57.143 0.00 0.00 0.00 3.02
4951 5293 0.909623 GGCACCTCCTTAAGCACCTA 59.090 55.000 0.00 0.00 0.00 3.08
4952 5294 0.842467 AGGCACCTCCTTAAGCACCT 60.842 55.000 0.00 0.00 44.75 4.00
4953 5295 0.909623 TAGGCACCTCCTTAAGCACC 59.090 55.000 0.00 0.00 44.75 5.01
4954 5296 1.831736 TCTAGGCACCTCCTTAAGCAC 59.168 52.381 0.00 0.00 44.75 4.40
4955 5297 2.247699 TCTAGGCACCTCCTTAAGCA 57.752 50.000 0.00 0.00 44.75 3.91
4956 5298 3.629142 TTTCTAGGCACCTCCTTAAGC 57.371 47.619 0.00 0.00 44.75 3.09
4957 5299 8.459635 GTTTATTTTTCTAGGCACCTCCTTAAG 58.540 37.037 0.00 0.00 44.75 1.85
4958 5300 7.395206 GGTTTATTTTTCTAGGCACCTCCTTAA 59.605 37.037 0.00 0.00 44.75 1.85
4959 5301 6.888088 GGTTTATTTTTCTAGGCACCTCCTTA 59.112 38.462 0.00 0.00 44.75 2.69
4960 5302 5.715279 GGTTTATTTTTCTAGGCACCTCCTT 59.285 40.000 0.00 0.00 44.75 3.36
4962 5304 5.014202 TGGTTTATTTTTCTAGGCACCTCC 58.986 41.667 0.00 0.00 0.00 4.30
4963 5305 5.710567 AGTGGTTTATTTTTCTAGGCACCTC 59.289 40.000 0.00 0.00 0.00 3.85
4964 5306 5.641155 AGTGGTTTATTTTTCTAGGCACCT 58.359 37.500 0.00 0.00 0.00 4.00
4965 5307 5.977489 AGTGGTTTATTTTTCTAGGCACC 57.023 39.130 0.00 0.00 0.00 5.01
4966 5308 7.658261 AGAAAGTGGTTTATTTTTCTAGGCAC 58.342 34.615 0.00 0.00 37.92 5.01
4967 5309 7.833285 AGAAAGTGGTTTATTTTTCTAGGCA 57.167 32.000 0.00 0.00 37.92 4.75
4987 5329 9.768662 ACAGGATAGACGTTTAACTTAAAGAAA 57.231 29.630 0.00 0.00 0.00 2.52
4989 5331 9.846248 GTACAGGATAGACGTTTAACTTAAAGA 57.154 33.333 0.00 0.00 0.00 2.52
4990 5332 8.792538 CGTACAGGATAGACGTTTAACTTAAAG 58.207 37.037 0.00 0.00 0.00 1.85
4991 5333 8.511321 TCGTACAGGATAGACGTTTAACTTAAA 58.489 33.333 0.00 0.00 37.81 1.52
4992 5334 8.039603 TCGTACAGGATAGACGTTTAACTTAA 57.960 34.615 0.00 0.00 37.81 1.85
4993 5335 7.609760 TCGTACAGGATAGACGTTTAACTTA 57.390 36.000 0.00 0.00 37.81 2.24
4994 5336 6.500684 TCGTACAGGATAGACGTTTAACTT 57.499 37.500 0.00 0.00 37.81 2.66
4995 5337 6.500684 TTCGTACAGGATAGACGTTTAACT 57.499 37.500 0.00 0.00 37.81 2.24
4996 5338 8.125448 ACTATTCGTACAGGATAGACGTTTAAC 58.875 37.037 15.55 0.00 37.81 2.01
4997 5339 8.213518 ACTATTCGTACAGGATAGACGTTTAA 57.786 34.615 15.55 0.00 37.81 1.52
4998 5340 7.495606 TGACTATTCGTACAGGATAGACGTTTA 59.504 37.037 15.55 0.00 37.81 2.01
4999 5341 6.317140 TGACTATTCGTACAGGATAGACGTTT 59.683 38.462 15.55 0.00 37.81 3.60
5000 5342 5.819379 TGACTATTCGTACAGGATAGACGTT 59.181 40.000 15.55 0.00 37.81 3.99
5001 5343 5.236047 GTGACTATTCGTACAGGATAGACGT 59.764 44.000 15.55 0.00 37.81 4.34
5002 5344 5.333952 GGTGACTATTCGTACAGGATAGACG 60.334 48.000 15.55 0.00 37.93 4.18
5003 5345 5.333952 CGGTGACTATTCGTACAGGATAGAC 60.334 48.000 15.55 11.54 0.00 2.59
5004 5346 4.753610 CGGTGACTATTCGTACAGGATAGA 59.246 45.833 15.55 0.00 0.00 1.98
5005 5347 4.083431 CCGGTGACTATTCGTACAGGATAG 60.083 50.000 9.93 9.93 31.25 2.08
5006 5348 3.817084 CCGGTGACTATTCGTACAGGATA 59.183 47.826 0.00 0.00 31.25 2.59
5007 5349 2.621998 CCGGTGACTATTCGTACAGGAT 59.378 50.000 0.00 0.00 31.25 3.24
5008 5350 2.019249 CCGGTGACTATTCGTACAGGA 58.981 52.381 0.00 0.00 31.25 3.86
5009 5351 1.747355 ACCGGTGACTATTCGTACAGG 59.253 52.381 6.12 0.00 35.04 4.00
5010 5352 2.793933 CACCGGTGACTATTCGTACAG 58.206 52.381 31.31 0.00 0.00 2.74
5011 5353 1.135315 GCACCGGTGACTATTCGTACA 60.135 52.381 38.30 0.00 0.00 2.90
5012 5354 1.133790 AGCACCGGTGACTATTCGTAC 59.866 52.381 38.30 15.70 0.00 3.67
5013 5355 1.466856 AGCACCGGTGACTATTCGTA 58.533 50.000 38.30 0.00 0.00 3.43
5014 5356 0.606604 AAGCACCGGTGACTATTCGT 59.393 50.000 38.30 14.29 0.00 3.85
5015 5357 2.572191 TAAGCACCGGTGACTATTCG 57.428 50.000 38.30 9.57 0.00 3.34
5016 5358 4.501071 TCTTTAAGCACCGGTGACTATTC 58.499 43.478 38.30 18.76 0.00 1.75
5017 5359 4.546829 TCTTTAAGCACCGGTGACTATT 57.453 40.909 38.30 25.09 0.00 1.73
5018 5360 4.546829 TTCTTTAAGCACCGGTGACTAT 57.453 40.909 38.30 20.86 0.00 2.12
5019 5361 4.339872 TTTCTTTAAGCACCGGTGACTA 57.660 40.909 38.30 23.38 0.00 2.59
5020 5362 2.922740 TTCTTTAAGCACCGGTGACT 57.077 45.000 38.30 28.66 0.00 3.41
5021 5363 3.549423 GGTTTTCTTTAAGCACCGGTGAC 60.549 47.826 38.30 26.95 0.00 3.67
5022 5364 2.619646 GGTTTTCTTTAAGCACCGGTGA 59.380 45.455 38.30 15.21 0.00 4.02
5023 5365 2.621526 AGGTTTTCTTTAAGCACCGGTG 59.378 45.455 30.66 30.66 32.32 4.94
5024 5366 2.940158 AGGTTTTCTTTAAGCACCGGT 58.060 42.857 0.00 0.00 32.32 5.28
5025 5367 4.070009 ACTAGGTTTTCTTTAAGCACCGG 58.930 43.478 0.00 0.00 32.32 5.28
5026 5368 5.684550 AACTAGGTTTTCTTTAAGCACCG 57.315 39.130 0.00 0.00 32.32 4.94
5027 5369 9.976511 AAATAAACTAGGTTTTCTTTAAGCACC 57.023 29.630 0.00 1.17 37.01 5.01
5035 5377 8.577296 GCTTGGAGAAATAAACTAGGTTTTCTT 58.423 33.333 8.51 0.00 38.25 2.52
5036 5378 7.724061 TGCTTGGAGAAATAAACTAGGTTTTCT 59.276 33.333 7.10 7.10 40.22 2.52
5037 5379 7.808381 GTGCTTGGAGAAATAAACTAGGTTTTC 59.192 37.037 0.00 0.00 37.01 2.29
5038 5380 7.255836 GGTGCTTGGAGAAATAAACTAGGTTTT 60.256 37.037 0.00 0.00 37.01 2.43
5039 5381 6.208797 GGTGCTTGGAGAAATAAACTAGGTTT 59.791 38.462 0.00 0.00 39.24 3.27
5040 5382 5.710567 GGTGCTTGGAGAAATAAACTAGGTT 59.289 40.000 0.00 0.00 0.00 3.50
5041 5383 5.014228 AGGTGCTTGGAGAAATAAACTAGGT 59.986 40.000 0.00 0.00 0.00 3.08
5042 5384 5.501156 AGGTGCTTGGAGAAATAAACTAGG 58.499 41.667 0.00 0.00 0.00 3.02
5043 5385 5.586643 GGAGGTGCTTGGAGAAATAAACTAG 59.413 44.000 0.00 0.00 0.00 2.57
5044 5386 5.497474 GGAGGTGCTTGGAGAAATAAACTA 58.503 41.667 0.00 0.00 0.00 2.24
5045 5387 4.336280 GGAGGTGCTTGGAGAAATAAACT 58.664 43.478 0.00 0.00 0.00 2.66
5046 5388 3.444034 GGGAGGTGCTTGGAGAAATAAAC 59.556 47.826 0.00 0.00 0.00 2.01
5047 5389 3.075283 TGGGAGGTGCTTGGAGAAATAAA 59.925 43.478 0.00 0.00 0.00 1.40
5048 5390 2.647299 TGGGAGGTGCTTGGAGAAATAA 59.353 45.455 0.00 0.00 0.00 1.40
5049 5391 2.274542 TGGGAGGTGCTTGGAGAAATA 58.725 47.619 0.00 0.00 0.00 1.40
5050 5392 1.075601 TGGGAGGTGCTTGGAGAAAT 58.924 50.000 0.00 0.00 0.00 2.17
5051 5393 1.075601 ATGGGAGGTGCTTGGAGAAA 58.924 50.000 0.00 0.00 0.00 2.52
5052 5394 1.965414 TATGGGAGGTGCTTGGAGAA 58.035 50.000 0.00 0.00 0.00 2.87
5053 5395 1.839994 CTTATGGGAGGTGCTTGGAGA 59.160 52.381 0.00 0.00 0.00 3.71
5054 5396 1.748591 GCTTATGGGAGGTGCTTGGAG 60.749 57.143 0.00 0.00 0.00 3.86
5055 5397 0.255890 GCTTATGGGAGGTGCTTGGA 59.744 55.000 0.00 0.00 0.00 3.53
5056 5398 0.034186 TGCTTATGGGAGGTGCTTGG 60.034 55.000 0.00 0.00 0.00 3.61
5057 5399 1.098050 GTGCTTATGGGAGGTGCTTG 58.902 55.000 0.00 0.00 0.00 4.01
5058 5400 0.034089 GGTGCTTATGGGAGGTGCTT 60.034 55.000 0.00 0.00 0.00 3.91
5059 5401 0.916358 AGGTGCTTATGGGAGGTGCT 60.916 55.000 0.00 0.00 0.00 4.40
5060 5402 0.034089 AAGGTGCTTATGGGAGGTGC 60.034 55.000 0.00 0.00 0.00 5.01
5061 5403 1.755179 CAAGGTGCTTATGGGAGGTG 58.245 55.000 0.00 0.00 0.00 4.00
5062 5404 0.034089 GCAAGGTGCTTATGGGAGGT 60.034 55.000 0.00 0.00 40.96 3.85
5063 5405 0.034186 TGCAAGGTGCTTATGGGAGG 60.034 55.000 1.43 0.00 45.31 4.30
5064 5406 2.062971 ATGCAAGGTGCTTATGGGAG 57.937 50.000 0.00 0.00 45.31 4.30
5065 5407 2.101783 CAATGCAAGGTGCTTATGGGA 58.898 47.619 0.00 0.00 45.31 4.37
5066 5408 1.826720 ACAATGCAAGGTGCTTATGGG 59.173 47.619 0.00 0.00 45.31 4.00
5067 5409 3.443329 TGTACAATGCAAGGTGCTTATGG 59.557 43.478 9.81 0.00 45.31 2.74
5068 5410 4.700268 TGTACAATGCAAGGTGCTTATG 57.300 40.909 9.81 1.16 45.31 1.90
5069 5411 5.314923 CTTGTACAATGCAAGGTGCTTAT 57.685 39.130 9.13 0.00 45.31 1.73
5070 5412 4.764679 CTTGTACAATGCAAGGTGCTTA 57.235 40.909 9.13 0.00 45.31 3.09
5071 5413 3.648339 CTTGTACAATGCAAGGTGCTT 57.352 42.857 9.13 0.00 45.31 3.91
5077 5419 3.505680 TGTAAGGCCTTGTACAATGCAAG 59.494 43.478 29.20 10.69 42.00 4.01
5078 5420 3.491342 TGTAAGGCCTTGTACAATGCAA 58.509 40.909 29.20 15.91 34.30 4.08
5079 5421 3.081061 CTGTAAGGCCTTGTACAATGCA 58.919 45.455 29.20 14.94 34.30 3.96
5080 5422 3.081804 ACTGTAAGGCCTTGTACAATGC 58.918 45.455 28.77 23.06 39.30 3.56
5081 5423 4.072131 ACACTGTAAGGCCTTGTACAATG 58.928 43.478 28.77 24.98 39.30 2.82
5082 5424 4.202419 TGACACTGTAAGGCCTTGTACAAT 60.202 41.667 28.77 12.52 39.30 2.71
5083 5425 3.134985 TGACACTGTAAGGCCTTGTACAA 59.865 43.478 28.77 8.28 39.30 2.41
5084 5426 2.701423 TGACACTGTAAGGCCTTGTACA 59.299 45.455 28.77 22.77 39.30 2.90
5085 5427 3.064931 GTGACACTGTAAGGCCTTGTAC 58.935 50.000 28.77 19.27 39.30 2.90
5086 5428 2.288579 CGTGACACTGTAAGGCCTTGTA 60.289 50.000 28.77 15.17 39.30 2.41
5087 5429 1.540363 CGTGACACTGTAAGGCCTTGT 60.540 52.381 28.77 17.80 39.30 3.16
5088 5430 1.148310 CGTGACACTGTAAGGCCTTG 58.852 55.000 28.77 14.28 39.30 3.61
5089 5431 0.756903 ACGTGACACTGTAAGGCCTT 59.243 50.000 24.18 24.18 39.30 4.35
5090 5432 0.756903 AACGTGACACTGTAAGGCCT 59.243 50.000 0.00 0.00 39.30 5.19
5091 5433 0.865769 CAACGTGACACTGTAAGGCC 59.134 55.000 3.68 0.00 39.30 5.19
5092 5434 1.578583 ACAACGTGACACTGTAAGGC 58.421 50.000 3.68 0.00 39.30 4.35
5093 5435 3.180980 CGTTACAACGTGACACTGTAAGG 59.819 47.826 16.54 17.45 46.63 2.69
5094 5436 4.350425 CGTTACAACGTGACACTGTAAG 57.650 45.455 16.54 9.85 46.63 2.34
5110 5452 0.743097 ACCGCCATAGACCTCGTTAC 59.257 55.000 0.00 0.00 0.00 2.50
5111 5453 0.742505 CACCGCCATAGACCTCGTTA 59.257 55.000 0.00 0.00 0.00 3.18
5152 5494 3.665675 GACGGTCGCTTGCATCCCT 62.666 63.158 0.00 0.00 0.00 4.20
5153 5495 3.195698 GACGGTCGCTTGCATCCC 61.196 66.667 0.00 0.00 0.00 3.85
5154 5496 3.195698 GGACGGTCGCTTGCATCC 61.196 66.667 1.43 0.00 0.00 3.51
5155 5497 3.195698 GGGACGGTCGCTTGCATC 61.196 66.667 16.96 0.00 0.00 3.91
5156 5498 3.329542 ATGGGACGGTCGCTTGCAT 62.330 57.895 23.23 8.09 0.00 3.96
5157 5499 4.015406 ATGGGACGGTCGCTTGCA 62.015 61.111 23.23 6.14 0.00 4.08
5158 5500 2.845752 TACATGGGACGGTCGCTTGC 62.846 60.000 28.89 6.84 37.79 4.01
5159 5501 0.179084 ATACATGGGACGGTCGCTTG 60.179 55.000 27.96 27.96 39.36 4.01
5160 5502 0.104304 GATACATGGGACGGTCGCTT 59.896 55.000 23.23 15.66 0.00 4.68
5161 5503 1.740285 GATACATGGGACGGTCGCT 59.260 57.895 23.23 8.42 0.00 4.93
5165 5507 2.138179 CGGGGATACATGGGACGGT 61.138 63.158 0.00 0.00 39.74 4.83
5166 5508 1.404479 TTCGGGGATACATGGGACGG 61.404 60.000 0.00 0.00 39.74 4.79
5167 5509 0.466543 TTTCGGGGATACATGGGACG 59.533 55.000 0.00 0.00 39.74 4.79
5168 5510 1.489230 AGTTTCGGGGATACATGGGAC 59.511 52.381 0.00 0.00 39.74 4.46
5169 5511 1.887797 AGTTTCGGGGATACATGGGA 58.112 50.000 0.00 0.00 39.74 4.37
5170 5512 2.550208 GCTAGTTTCGGGGATACATGGG 60.550 54.545 0.00 0.00 39.74 4.00
5171 5513 2.104111 TGCTAGTTTCGGGGATACATGG 59.896 50.000 0.00 0.00 39.74 3.66
5172 5514 3.469008 TGCTAGTTTCGGGGATACATG 57.531 47.619 0.00 0.00 39.74 3.21
5173 5515 4.497291 TTTGCTAGTTTCGGGGATACAT 57.503 40.909 0.00 0.00 39.74 2.29
5174 5516 3.985019 TTTGCTAGTTTCGGGGATACA 57.015 42.857 0.00 0.00 39.74 2.29
5175 5517 5.049612 GCTAATTTGCTAGTTTCGGGGATAC 60.050 44.000 4.53 0.00 0.00 2.24
5176 5518 5.061179 GCTAATTTGCTAGTTTCGGGGATA 58.939 41.667 4.53 0.00 0.00 2.59
5177 5519 3.883489 GCTAATTTGCTAGTTTCGGGGAT 59.117 43.478 4.53 0.00 0.00 3.85
5183 5525 5.295540 CAGAGGGAGCTAATTTGCTAGTTTC 59.704 44.000 14.46 9.85 44.17 2.78
5205 5547 2.612115 AGGAAGGGTGGAGGCCAG 60.612 66.667 5.01 0.00 32.34 4.85
5219 5561 3.260205 AGGAGGAAAATGGAAGTGAGGA 58.740 45.455 0.00 0.00 0.00 3.71
5221 5563 3.615155 GGAGGAGGAAAATGGAAGTGAG 58.385 50.000 0.00 0.00 0.00 3.51
5244 5586 3.008485 AGAAGGGTGAAGCTTAGAGGTTG 59.992 47.826 0.00 0.00 35.86 3.77
5251 5593 2.038863 TGGGAGAAGGGTGAAGCTTA 57.961 50.000 0.00 0.00 0.00 3.09
5252 5594 1.283321 GATGGGAGAAGGGTGAAGCTT 59.717 52.381 0.00 0.00 0.00 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.