Multiple sequence alignment - TraesCS3B01G216300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G216300 chr3B 100.000 2746 0 0 1 2746 257245929 257243184 0.000000e+00 5072
1 TraesCS3B01G216300 chr3D 94.335 2224 56 16 557 2746 179168991 179166804 0.000000e+00 3345
2 TraesCS3B01G216300 chr3D 95.683 278 12 0 229 506 228000193 228000470 5.390000e-122 448
3 TraesCS3B01G216300 chr3D 92.609 230 16 1 1 229 15906086 15906315 2.040000e-86 329
4 TraesCS3B01G216300 chr3A 91.993 2223 83 31 557 2745 221931935 221929774 0.000000e+00 3031
5 TraesCS3B01G216300 chr2D 96.113 283 11 0 229 511 66093072 66092790 1.930000e-126 462
6 TraesCS3B01G216300 chr2D 96.043 278 11 0 229 506 172735529 172735252 1.160000e-123 453
7 TraesCS3B01G216300 chr2D 95.683 278 12 0 229 506 409529496 409529219 5.390000e-122 448
8 TraesCS3B01G216300 chr2D 92.609 230 16 1 1 229 622371011 622370782 2.040000e-86 329
9 TraesCS3B01G216300 chr2D 92.174 230 16 2 1 229 5432474 5432246 9.480000e-85 324
10 TraesCS3B01G216300 chr5D 96.403 278 10 0 229 506 315919165 315918888 2.490000e-125 459
11 TraesCS3B01G216300 chr5D 92.174 230 15 2 1 229 489893782 489893555 3.410000e-84 322
12 TraesCS3B01G216300 chr5D 91.739 230 18 1 1 229 13292849 13293078 4.410000e-83 318
13 TraesCS3B01G216300 chr7D 96.043 278 11 0 229 506 531437567 531437290 1.160000e-123 453
14 TraesCS3B01G216300 chr7D 93.043 230 15 1 1 229 205951409 205951180 4.380000e-88 335
15 TraesCS3B01G216300 chr7D 91.739 230 18 1 1 229 533622989 533622760 4.410000e-83 318
16 TraesCS3B01G216300 chr6D 95.730 281 11 1 229 509 107340826 107340547 4.170000e-123 451
17 TraesCS3B01G216300 chr6A 95.683 278 12 0 229 506 202074178 202074455 5.390000e-122 448
18 TraesCS3B01G216300 chr4D 95.683 278 12 0 229 506 13094335 13094612 5.390000e-122 448
19 TraesCS3B01G216300 chr4A 92.208 231 16 2 1 229 703761582 703761812 2.640000e-85 326
20 TraesCS3B01G216300 chr7A 91.739 230 18 1 1 229 54993668 54993439 4.410000e-83 318


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G216300 chr3B 257243184 257245929 2745 True 5072 5072 100.000 1 2746 1 chr3B.!!$R1 2745
1 TraesCS3B01G216300 chr3D 179166804 179168991 2187 True 3345 3345 94.335 557 2746 1 chr3D.!!$R1 2189
2 TraesCS3B01G216300 chr3A 221929774 221931935 2161 True 3031 3031 91.993 557 2745 1 chr3A.!!$R1 2188

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.031043 TCGTCGCGTTCCTTCTTGAA 59.969 50.0 5.77 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1974 2005 1.48124 CACGGATCACAGTATCGCAG 58.519 55.0 0.0 0.0 0.0 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.320359 ACCCTAAGCCATGTCCGG 58.680 61.111 0.00 0.00 0.00 5.14
18 19 1.615424 ACCCTAAGCCATGTCCGGT 60.615 57.895 0.00 0.00 0.00 5.28
19 20 0.325860 ACCCTAAGCCATGTCCGGTA 60.326 55.000 0.00 0.00 0.00 4.02
20 21 0.393077 CCCTAAGCCATGTCCGGTAG 59.607 60.000 0.00 0.00 0.00 3.18
21 22 0.249911 CCTAAGCCATGTCCGGTAGC 60.250 60.000 0.00 0.00 0.00 3.58
22 23 0.464036 CTAAGCCATGTCCGGTAGCA 59.536 55.000 0.00 0.00 0.00 3.49
23 24 0.464036 TAAGCCATGTCCGGTAGCAG 59.536 55.000 0.00 0.00 0.00 4.24
24 25 2.876368 AAGCCATGTCCGGTAGCAGC 62.876 60.000 0.00 0.28 0.00 5.25
25 26 2.586079 CCATGTCCGGTAGCAGCG 60.586 66.667 0.00 0.00 39.06 5.18
26 27 2.184322 CATGTCCGGTAGCAGCGT 59.816 61.111 0.00 0.00 37.40 5.07
27 28 1.878522 CATGTCCGGTAGCAGCGTC 60.879 63.158 0.00 1.93 37.40 5.19
28 29 3.411418 ATGTCCGGTAGCAGCGTCG 62.411 63.158 0.00 0.00 37.40 5.12
29 30 4.112341 GTCCGGTAGCAGCGTCGT 62.112 66.667 0.00 0.00 37.40 4.34
30 31 3.367743 TCCGGTAGCAGCGTCGTT 61.368 61.111 0.00 0.00 37.40 3.85
31 32 3.179265 CCGGTAGCAGCGTCGTTG 61.179 66.667 4.52 4.52 37.40 4.10
32 33 2.430244 CGGTAGCAGCGTCGTTGT 60.430 61.111 10.87 0.81 33.95 3.32
33 34 2.434134 CGGTAGCAGCGTCGTTGTC 61.434 63.158 10.87 3.50 33.95 3.18
34 35 2.434134 GGTAGCAGCGTCGTTGTCG 61.434 63.158 10.87 0.00 38.55 4.35
35 36 1.728426 GTAGCAGCGTCGTTGTCGT 60.728 57.895 10.87 0.00 38.33 4.34
36 37 1.441515 TAGCAGCGTCGTTGTCGTC 60.442 57.895 10.87 0.00 38.33 4.20
37 38 4.104633 GCAGCGTCGTTGTCGTCG 62.105 66.667 10.87 3.42 46.99 5.12
41 42 3.381212 CGTCGTTGTCGTCGCGTT 61.381 61.111 5.77 0.00 40.72 4.84
42 43 2.458629 GTCGTTGTCGTCGCGTTC 59.541 61.111 5.77 0.00 38.33 3.95
43 44 2.726912 TCGTTGTCGTCGCGTTCC 60.727 61.111 5.77 0.00 38.33 3.62
44 45 2.728383 CGTTGTCGTCGCGTTCCT 60.728 61.111 5.77 0.00 0.00 3.36
45 46 2.297912 CGTTGTCGTCGCGTTCCTT 61.298 57.895 5.77 0.00 0.00 3.36
46 47 1.485943 GTTGTCGTCGCGTTCCTTC 59.514 57.895 5.77 0.00 0.00 3.46
47 48 0.938168 GTTGTCGTCGCGTTCCTTCT 60.938 55.000 5.77 0.00 0.00 2.85
48 49 0.249155 TTGTCGTCGCGTTCCTTCTT 60.249 50.000 5.77 0.00 0.00 2.52
49 50 0.937699 TGTCGTCGCGTTCCTTCTTG 60.938 55.000 5.77 0.00 0.00 3.02
50 51 0.662374 GTCGTCGCGTTCCTTCTTGA 60.662 55.000 5.77 0.00 0.00 3.02
51 52 0.031043 TCGTCGCGTTCCTTCTTGAA 59.969 50.000 5.77 0.00 0.00 2.69
52 53 0.435008 CGTCGCGTTCCTTCTTGAAG 59.565 55.000 5.77 3.55 0.00 3.02
53 54 0.790814 GTCGCGTTCCTTCTTGAAGG 59.209 55.000 20.21 20.21 41.35 3.46
54 55 0.677288 TCGCGTTCCTTCTTGAAGGA 59.323 50.000 23.69 23.69 46.67 3.36
61 62 3.864789 TCCTTCTTGAAGGAGTTGCTT 57.135 42.857 23.69 0.00 43.68 3.91
62 63 3.480470 TCCTTCTTGAAGGAGTTGCTTG 58.520 45.455 23.69 0.77 43.68 4.01
63 64 2.555757 CCTTCTTGAAGGAGTTGCTTGG 59.444 50.000 21.34 0.00 42.62 3.61
64 65 3.217626 CTTCTTGAAGGAGTTGCTTGGT 58.782 45.455 2.63 0.00 0.00 3.67
65 66 4.389374 CTTCTTGAAGGAGTTGCTTGGTA 58.611 43.478 2.63 0.00 0.00 3.25
66 67 4.640771 TCTTGAAGGAGTTGCTTGGTAT 57.359 40.909 0.00 0.00 0.00 2.73
67 68 4.326826 TCTTGAAGGAGTTGCTTGGTATG 58.673 43.478 0.00 0.00 0.00 2.39
68 69 2.436417 TGAAGGAGTTGCTTGGTATGC 58.564 47.619 0.00 0.00 0.00 3.14
69 70 1.398390 GAAGGAGTTGCTTGGTATGCG 59.602 52.381 0.00 0.00 0.00 4.73
70 71 0.392998 AGGAGTTGCTTGGTATGCGG 60.393 55.000 0.00 0.00 0.00 5.69
71 72 1.429423 GAGTTGCTTGGTATGCGGC 59.571 57.895 0.00 0.00 0.00 6.53
72 73 2.100216 GTTGCTTGGTATGCGGCG 59.900 61.111 0.51 0.51 0.00 6.46
73 74 2.359354 TTGCTTGGTATGCGGCGT 60.359 55.556 9.37 0.00 0.00 5.68
74 75 1.969064 TTGCTTGGTATGCGGCGTT 60.969 52.632 9.37 0.00 0.00 4.84
75 76 1.519751 TTGCTTGGTATGCGGCGTTT 61.520 50.000 9.37 0.00 0.00 3.60
76 77 1.226295 GCTTGGTATGCGGCGTTTC 60.226 57.895 9.37 0.00 0.00 2.78
77 78 1.060308 CTTGGTATGCGGCGTTTCG 59.940 57.895 9.37 0.00 0.00 3.46
78 79 2.304516 CTTGGTATGCGGCGTTTCGG 62.305 60.000 9.37 0.00 0.00 4.30
79 80 3.569690 GGTATGCGGCGTTTCGGG 61.570 66.667 9.37 0.00 0.00 5.14
80 81 2.509786 GTATGCGGCGTTTCGGGA 60.510 61.111 9.37 0.00 0.00 5.14
81 82 1.885850 GTATGCGGCGTTTCGGGAT 60.886 57.895 9.37 0.00 0.00 3.85
82 83 1.885388 TATGCGGCGTTTCGGGATG 60.885 57.895 9.37 0.00 0.00 3.51
85 86 2.202824 CGGCGTTTCGGGATGCTA 60.203 61.111 0.00 0.00 0.00 3.49
86 87 2.237751 CGGCGTTTCGGGATGCTAG 61.238 63.158 0.00 0.00 0.00 3.42
87 88 1.887707 GGCGTTTCGGGATGCTAGG 60.888 63.158 0.00 0.00 0.00 3.02
88 89 1.143183 GCGTTTCGGGATGCTAGGA 59.857 57.895 0.00 0.00 0.00 2.94
89 90 0.876342 GCGTTTCGGGATGCTAGGAG 60.876 60.000 0.00 0.00 0.00 3.69
90 91 0.876342 CGTTTCGGGATGCTAGGAGC 60.876 60.000 0.00 0.00 42.82 4.70
91 92 0.876342 GTTTCGGGATGCTAGGAGCG 60.876 60.000 0.00 0.00 46.26 5.03
92 93 1.327690 TTTCGGGATGCTAGGAGCGT 61.328 55.000 0.00 0.00 46.26 5.07
93 94 2.016393 TTCGGGATGCTAGGAGCGTG 62.016 60.000 0.00 0.00 46.26 5.34
94 95 2.423446 GGGATGCTAGGAGCGTGG 59.577 66.667 0.00 0.00 46.26 4.94
95 96 2.435693 GGGATGCTAGGAGCGTGGT 61.436 63.158 0.00 0.00 46.26 4.16
96 97 1.227380 GGATGCTAGGAGCGTGGTG 60.227 63.158 0.00 0.00 46.26 4.17
97 98 1.227380 GATGCTAGGAGCGTGGTGG 60.227 63.158 0.00 0.00 46.26 4.61
98 99 1.676678 GATGCTAGGAGCGTGGTGGA 61.677 60.000 0.00 0.00 46.26 4.02
99 100 1.264749 ATGCTAGGAGCGTGGTGGAA 61.265 55.000 0.00 0.00 46.26 3.53
100 101 1.264749 TGCTAGGAGCGTGGTGGAAT 61.265 55.000 0.00 0.00 46.26 3.01
101 102 0.107654 GCTAGGAGCGTGGTGGAATT 60.108 55.000 0.00 0.00 0.00 2.17
102 103 1.941325 CTAGGAGCGTGGTGGAATTC 58.059 55.000 0.00 0.00 0.00 2.17
103 104 1.482593 CTAGGAGCGTGGTGGAATTCT 59.517 52.381 5.23 0.00 0.00 2.40
104 105 0.250513 AGGAGCGTGGTGGAATTCTC 59.749 55.000 5.23 0.00 0.00 2.87
105 106 0.744771 GGAGCGTGGTGGAATTCTCC 60.745 60.000 5.23 9.03 42.81 3.71
106 107 1.079127 AGCGTGGTGGAATTCTCCG 60.079 57.895 5.23 2.45 45.85 4.63
107 108 2.106683 GCGTGGTGGAATTCTCCGG 61.107 63.158 5.23 0.00 45.85 5.14
108 109 2.106683 CGTGGTGGAATTCTCCGGC 61.107 63.158 5.23 5.33 45.85 6.13
109 110 2.106683 GTGGTGGAATTCTCCGGCG 61.107 63.158 5.23 0.00 45.85 6.46
110 111 2.513897 GGTGGAATTCTCCGGCGG 60.514 66.667 22.51 22.51 45.85 6.13
111 112 2.513897 GTGGAATTCTCCGGCGGG 60.514 66.667 27.98 17.02 45.85 6.13
112 113 4.483243 TGGAATTCTCCGGCGGGC 62.483 66.667 27.98 8.56 45.85 6.13
130 131 3.494336 GCAGCGCTTGCGAGTCAT 61.494 61.111 19.55 0.00 44.09 3.06
131 132 2.699809 CAGCGCTTGCGAGTCATC 59.300 61.111 19.55 0.00 45.69 2.92
132 133 1.808799 CAGCGCTTGCGAGTCATCT 60.809 57.895 19.55 2.02 45.69 2.90
133 134 1.079543 AGCGCTTGCGAGTCATCTT 60.080 52.632 19.55 0.00 45.69 2.40
134 135 1.080995 AGCGCTTGCGAGTCATCTTC 61.081 55.000 19.55 0.00 45.69 2.87
135 136 1.354337 GCGCTTGCGAGTCATCTTCA 61.354 55.000 19.55 0.00 0.00 3.02
136 137 1.284657 CGCTTGCGAGTCATCTTCAT 58.715 50.000 9.60 0.00 0.00 2.57
137 138 1.662629 CGCTTGCGAGTCATCTTCATT 59.337 47.619 9.60 0.00 0.00 2.57
138 139 2.094894 CGCTTGCGAGTCATCTTCATTT 59.905 45.455 9.60 0.00 0.00 2.32
139 140 3.425359 CGCTTGCGAGTCATCTTCATTTT 60.425 43.478 9.60 0.00 0.00 1.82
140 141 4.479619 GCTTGCGAGTCATCTTCATTTTT 58.520 39.130 2.14 0.00 0.00 1.94
141 142 4.322804 GCTTGCGAGTCATCTTCATTTTTG 59.677 41.667 2.14 0.00 0.00 2.44
142 143 5.437289 TTGCGAGTCATCTTCATTTTTGT 57.563 34.783 0.00 0.00 0.00 2.83
143 144 5.437289 TGCGAGTCATCTTCATTTTTGTT 57.563 34.783 0.00 0.00 0.00 2.83
144 145 5.214417 TGCGAGTCATCTTCATTTTTGTTG 58.786 37.500 0.00 0.00 0.00 3.33
145 146 5.008514 TGCGAGTCATCTTCATTTTTGTTGA 59.991 36.000 0.00 0.00 0.00 3.18
146 147 6.088824 GCGAGTCATCTTCATTTTTGTTGAT 58.911 36.000 0.00 0.00 0.00 2.57
147 148 6.250104 GCGAGTCATCTTCATTTTTGTTGATC 59.750 38.462 0.00 0.00 0.00 2.92
148 149 6.744537 CGAGTCATCTTCATTTTTGTTGATCC 59.255 38.462 0.00 0.00 0.00 3.36
149 150 6.615088 AGTCATCTTCATTTTTGTTGATCCG 58.385 36.000 0.00 0.00 0.00 4.18
150 151 5.287035 GTCATCTTCATTTTTGTTGATCCGC 59.713 40.000 0.00 0.00 0.00 5.54
151 152 4.173036 TCTTCATTTTTGTTGATCCGCC 57.827 40.909 0.00 0.00 0.00 6.13
152 153 2.627863 TCATTTTTGTTGATCCGCCG 57.372 45.000 0.00 0.00 0.00 6.46
153 154 1.883275 TCATTTTTGTTGATCCGCCGT 59.117 42.857 0.00 0.00 0.00 5.68
154 155 2.294791 TCATTTTTGTTGATCCGCCGTT 59.705 40.909 0.00 0.00 0.00 4.44
155 156 2.126914 TTTTTGTTGATCCGCCGTTG 57.873 45.000 0.00 0.00 0.00 4.10
156 157 1.025812 TTTTGTTGATCCGCCGTTGT 58.974 45.000 0.00 0.00 0.00 3.32
157 158 0.589223 TTTGTTGATCCGCCGTTGTC 59.411 50.000 0.00 0.00 0.00 3.18
158 159 1.561717 TTGTTGATCCGCCGTTGTCG 61.562 55.000 0.00 0.00 0.00 4.35
210 211 3.376218 TTTTTGGGTGTGCATGTGC 57.624 47.368 0.00 0.00 42.50 4.57
211 212 0.829333 TTTTTGGGTGTGCATGTGCT 59.171 45.000 6.55 0.00 42.66 4.40
212 213 0.104487 TTTTGGGTGTGCATGTGCTG 59.896 50.000 6.55 0.00 42.66 4.41
223 224 1.241165 CATGTGCTGCTTTCACTCCA 58.759 50.000 0.00 0.00 35.58 3.86
224 225 1.199327 CATGTGCTGCTTTCACTCCAG 59.801 52.381 0.00 0.00 35.58 3.86
228 229 2.251600 CTGCTTTCACTCCAGCACC 58.748 57.895 0.00 0.00 41.20 5.01
229 230 1.228245 TGCTTTCACTCCAGCACCC 60.228 57.895 0.00 0.00 41.20 4.61
230 231 1.228245 GCTTTCACTCCAGCACCCA 60.228 57.895 0.00 0.00 35.95 4.51
231 232 1.518903 GCTTTCACTCCAGCACCCAC 61.519 60.000 0.00 0.00 35.95 4.61
232 233 0.179020 CTTTCACTCCAGCACCCACA 60.179 55.000 0.00 0.00 0.00 4.17
233 234 0.257328 TTTCACTCCAGCACCCACAA 59.743 50.000 0.00 0.00 0.00 3.33
234 235 0.478072 TTCACTCCAGCACCCACAAT 59.522 50.000 0.00 0.00 0.00 2.71
235 236 0.250858 TCACTCCAGCACCCACAATG 60.251 55.000 0.00 0.00 0.00 2.82
236 237 1.075482 ACTCCAGCACCCACAATGG 59.925 57.895 0.00 0.00 37.25 3.16
251 252 6.235231 CCACAATGGGTAGTAACATAGACT 57.765 41.667 0.00 0.00 32.67 3.24
252 253 7.356089 CCACAATGGGTAGTAACATAGACTA 57.644 40.000 0.00 0.00 32.67 2.59
253 254 7.434492 CCACAATGGGTAGTAACATAGACTAG 58.566 42.308 0.00 0.00 32.67 2.57
254 255 7.069578 CCACAATGGGTAGTAACATAGACTAGT 59.930 40.741 0.00 0.00 32.67 2.57
255 256 9.128404 CACAATGGGTAGTAACATAGACTAGTA 57.872 37.037 0.00 0.00 30.08 1.82
256 257 9.705103 ACAATGGGTAGTAACATAGACTAGTAA 57.295 33.333 0.00 0.00 30.08 2.24
257 258 9.962783 CAATGGGTAGTAACATAGACTAGTAAC 57.037 37.037 0.00 0.00 30.08 2.50
258 259 9.705103 AATGGGTAGTAACATAGACTAGTAACA 57.295 33.333 0.00 0.00 30.08 2.41
259 260 9.878737 ATGGGTAGTAACATAGACTAGTAACAT 57.121 33.333 0.00 0.00 30.08 2.71
260 261 9.128404 TGGGTAGTAACATAGACTAGTAACATG 57.872 37.037 0.00 2.36 30.08 3.21
261 262 8.081025 GGGTAGTAACATAGACTAGTAACATGC 58.919 40.741 0.00 0.00 30.08 4.06
262 263 8.081025 GGTAGTAACATAGACTAGTAACATGCC 58.919 40.741 0.00 0.00 30.08 4.40
263 264 7.052142 AGTAACATAGACTAGTAACATGCCC 57.948 40.000 0.00 0.00 0.00 5.36
264 265 5.950544 AACATAGACTAGTAACATGCCCA 57.049 39.130 0.00 0.00 0.00 5.36
265 266 6.500589 AACATAGACTAGTAACATGCCCAT 57.499 37.500 0.00 0.00 0.00 4.00
266 267 5.858381 ACATAGACTAGTAACATGCCCATG 58.142 41.667 6.71 6.71 44.15 3.66
280 281 5.858381 CATGCCCATGTTACTACTCTATGT 58.142 41.667 0.13 0.00 34.23 2.29
281 282 5.950544 TGCCCATGTTACTACTCTATGTT 57.049 39.130 0.00 0.00 0.00 2.71
282 283 7.441836 CATGCCCATGTTACTACTCTATGTTA 58.558 38.462 0.13 0.00 34.23 2.41
283 284 6.812998 TGCCCATGTTACTACTCTATGTTAC 58.187 40.000 0.00 0.00 0.00 2.50
284 285 6.610020 TGCCCATGTTACTACTCTATGTTACT 59.390 38.462 0.00 0.00 0.00 2.24
285 286 7.781219 TGCCCATGTTACTACTCTATGTTACTA 59.219 37.037 0.00 0.00 0.00 1.82
286 287 8.081025 GCCCATGTTACTACTCTATGTTACTAC 58.919 40.741 0.00 0.00 0.00 2.73
287 288 8.574737 CCCATGTTACTACTCTATGTTACTACC 58.425 40.741 0.00 0.00 0.00 3.18
288 289 9.352191 CCATGTTACTACTCTATGTTACTACCT 57.648 37.037 0.00 0.00 0.00 3.08
298 299 8.384718 ACTCTATGTTACTACCTCTATAGTGGG 58.615 40.741 21.82 16.23 36.09 4.61
299 300 7.696981 TCTATGTTACTACCTCTATAGTGGGG 58.303 42.308 21.82 16.35 36.09 4.96
300 301 5.999987 TGTTACTACCTCTATAGTGGGGA 57.000 43.478 21.82 11.28 36.09 4.81
301 302 5.950023 TGTTACTACCTCTATAGTGGGGAG 58.050 45.833 21.82 20.04 36.09 4.30
302 303 5.434376 TGTTACTACCTCTATAGTGGGGAGT 59.566 44.000 24.72 24.72 36.09 3.85
303 304 6.621098 TGTTACTACCTCTATAGTGGGGAGTA 59.379 42.308 23.32 23.32 36.09 2.59
304 305 7.129349 TGTTACTACCTCTATAGTGGGGAGTAA 59.871 40.741 28.26 28.26 38.03 2.24
305 306 5.951204 ACTACCTCTATAGTGGGGAGTAAC 58.049 45.833 22.09 0.00 34.02 2.50
306 307 4.894252 ACCTCTATAGTGGGGAGTAACA 57.106 45.455 21.82 0.00 33.22 2.41
307 308 5.420215 ACCTCTATAGTGGGGAGTAACAT 57.580 43.478 21.82 0.00 33.22 2.71
308 309 6.541264 ACCTCTATAGTGGGGAGTAACATA 57.459 41.667 21.82 0.00 33.22 2.29
309 310 7.117331 ACCTCTATAGTGGGGAGTAACATAT 57.883 40.000 21.82 0.00 33.22 1.78
310 311 6.954684 ACCTCTATAGTGGGGAGTAACATATG 59.045 42.308 21.82 0.00 33.22 1.78
311 312 6.954684 CCTCTATAGTGGGGAGTAACATATGT 59.045 42.308 12.29 1.41 0.00 2.29
312 313 7.093727 CCTCTATAGTGGGGAGTAACATATGTG 60.094 44.444 9.63 0.00 0.00 3.21
313 314 7.302948 TCTATAGTGGGGAGTAACATATGTGT 58.697 38.462 9.63 2.63 41.28 3.72
314 315 4.487714 AGTGGGGAGTAACATATGTGTG 57.512 45.455 9.63 0.00 38.92 3.82
315 316 3.199946 AGTGGGGAGTAACATATGTGTGG 59.800 47.826 9.63 0.00 38.92 4.17
316 317 3.054655 GTGGGGAGTAACATATGTGTGGT 60.055 47.826 9.63 0.00 38.92 4.16
317 318 4.162698 GTGGGGAGTAACATATGTGTGGTA 59.837 45.833 9.63 0.00 38.92 3.25
318 319 4.783763 TGGGGAGTAACATATGTGTGGTAA 59.216 41.667 9.63 0.00 38.92 2.85
319 320 5.121105 GGGGAGTAACATATGTGTGGTAAC 58.879 45.833 9.63 1.91 38.92 2.50
333 334 3.719268 TGGTAACATGGAGCACTTCAT 57.281 42.857 0.00 0.00 46.17 2.57
334 335 4.032960 TGGTAACATGGAGCACTTCATT 57.967 40.909 0.00 0.00 46.17 2.57
335 336 4.406456 TGGTAACATGGAGCACTTCATTT 58.594 39.130 0.00 0.00 46.17 2.32
336 337 5.565509 TGGTAACATGGAGCACTTCATTTA 58.434 37.500 0.00 0.00 46.17 1.40
337 338 6.186957 TGGTAACATGGAGCACTTCATTTAT 58.813 36.000 0.00 0.00 46.17 1.40
338 339 6.663093 TGGTAACATGGAGCACTTCATTTATT 59.337 34.615 0.00 0.00 46.17 1.40
339 340 7.831690 TGGTAACATGGAGCACTTCATTTATTA 59.168 33.333 0.00 0.00 46.17 0.98
340 341 8.345565 GGTAACATGGAGCACTTCATTTATTAG 58.654 37.037 0.00 0.00 0.00 1.73
341 342 6.949352 ACATGGAGCACTTCATTTATTAGG 57.051 37.500 0.00 0.00 0.00 2.69
342 343 5.300286 ACATGGAGCACTTCATTTATTAGGC 59.700 40.000 0.00 0.00 0.00 3.93
343 344 5.116084 TGGAGCACTTCATTTATTAGGCT 57.884 39.130 0.00 0.00 0.00 4.58
344 345 6.247229 TGGAGCACTTCATTTATTAGGCTA 57.753 37.500 0.00 0.00 0.00 3.93
345 346 6.841601 TGGAGCACTTCATTTATTAGGCTAT 58.158 36.000 0.00 0.00 0.00 2.97
346 347 7.973402 TGGAGCACTTCATTTATTAGGCTATA 58.027 34.615 0.00 0.00 0.00 1.31
347 348 8.097038 TGGAGCACTTCATTTATTAGGCTATAG 58.903 37.037 0.00 0.00 0.00 1.31
348 349 8.314751 GGAGCACTTCATTTATTAGGCTATAGA 58.685 37.037 3.21 0.00 0.00 1.98
349 350 9.883142 GAGCACTTCATTTATTAGGCTATAGAT 57.117 33.333 3.21 0.00 0.00 1.98
358 359 9.892130 ATTTATTAGGCTATAGATACACCTTGC 57.108 33.333 3.21 0.00 31.79 4.01
359 360 5.740290 TTAGGCTATAGATACACCTTGCC 57.260 43.478 3.21 0.00 39.40 4.52
360 361 3.863086 AGGCTATAGATACACCTTGCCT 58.137 45.455 3.21 0.00 43.81 4.75
361 362 4.235372 AGGCTATAGATACACCTTGCCTT 58.765 43.478 3.21 0.00 46.04 4.35
362 363 4.040952 AGGCTATAGATACACCTTGCCTTG 59.959 45.833 3.21 0.00 46.04 3.61
363 364 4.040461 GGCTATAGATACACCTTGCCTTGA 59.960 45.833 3.21 0.00 36.52 3.02
364 365 5.280215 GGCTATAGATACACCTTGCCTTGAT 60.280 44.000 3.21 0.00 36.52 2.57
365 366 6.070767 GGCTATAGATACACCTTGCCTTGATA 60.071 42.308 3.21 0.00 36.52 2.15
366 367 7.365117 GGCTATAGATACACCTTGCCTTGATAT 60.365 40.741 3.21 0.00 36.52 1.63
367 368 7.493971 GCTATAGATACACCTTGCCTTGATATG 59.506 40.741 3.21 0.00 0.00 1.78
368 369 5.636903 AGATACACCTTGCCTTGATATGT 57.363 39.130 0.00 0.00 0.00 2.29
369 370 5.371526 AGATACACCTTGCCTTGATATGTG 58.628 41.667 0.00 0.00 0.00 3.21
370 371 3.439857 ACACCTTGCCTTGATATGTGT 57.560 42.857 0.00 0.00 0.00 3.72
371 372 3.084039 ACACCTTGCCTTGATATGTGTG 58.916 45.455 0.00 0.00 34.47 3.82
372 373 3.244875 ACACCTTGCCTTGATATGTGTGA 60.245 43.478 0.00 0.00 34.47 3.58
373 374 3.949754 CACCTTGCCTTGATATGTGTGAT 59.050 43.478 0.00 0.00 0.00 3.06
374 375 3.949754 ACCTTGCCTTGATATGTGTGATG 59.050 43.478 0.00 0.00 0.00 3.07
375 376 3.949754 CCTTGCCTTGATATGTGTGATGT 59.050 43.478 0.00 0.00 0.00 3.06
376 377 4.400251 CCTTGCCTTGATATGTGTGATGTT 59.600 41.667 0.00 0.00 0.00 2.71
377 378 5.589855 CCTTGCCTTGATATGTGTGATGTTA 59.410 40.000 0.00 0.00 0.00 2.41
378 379 6.435430 TTGCCTTGATATGTGTGATGTTAC 57.565 37.500 0.00 0.00 0.00 2.50
379 380 5.744171 TGCCTTGATATGTGTGATGTTACT 58.256 37.500 0.00 0.00 0.00 2.24
380 381 5.817296 TGCCTTGATATGTGTGATGTTACTC 59.183 40.000 0.00 0.00 0.00 2.59
381 382 5.817296 GCCTTGATATGTGTGATGTTACTCA 59.183 40.000 0.00 0.00 0.00 3.41
382 383 6.484643 GCCTTGATATGTGTGATGTTACTCAT 59.515 38.462 0.00 0.00 38.11 2.90
383 384 7.657354 GCCTTGATATGTGTGATGTTACTCATA 59.343 37.037 0.00 0.00 39.73 2.15
384 385 8.982685 CCTTGATATGTGTGATGTTACTCATAC 58.017 37.037 0.00 5.35 38.84 2.39
385 386 9.755804 CTTGATATGTGTGATGTTACTCATACT 57.244 33.333 10.75 3.32 38.84 2.12
391 392 8.803397 TGTGTGATGTTACTCATACTAGTAGT 57.197 34.615 8.85 8.14 37.92 2.73
392 393 9.895138 TGTGTGATGTTACTCATACTAGTAGTA 57.105 33.333 12.38 12.38 37.92 1.82
418 419 8.894768 ACTAGCTATGTTACCATTTTCATCTC 57.105 34.615 0.00 0.00 32.29 2.75
419 420 8.709308 ACTAGCTATGTTACCATTTTCATCTCT 58.291 33.333 0.00 0.00 32.29 3.10
420 421 9.553064 CTAGCTATGTTACCATTTTCATCTCTT 57.447 33.333 0.00 0.00 32.29 2.85
421 422 8.814038 AGCTATGTTACCATTTTCATCTCTTT 57.186 30.769 0.00 0.00 32.29 2.52
422 423 8.897752 AGCTATGTTACCATTTTCATCTCTTTC 58.102 33.333 0.00 0.00 32.29 2.62
423 424 8.897752 GCTATGTTACCATTTTCATCTCTTTCT 58.102 33.333 0.00 0.00 32.29 2.52
426 427 8.690203 TGTTACCATTTTCATCTCTTTCTTCA 57.310 30.769 0.00 0.00 0.00 3.02
427 428 9.300681 TGTTACCATTTTCATCTCTTTCTTCAT 57.699 29.630 0.00 0.00 0.00 2.57
437 438 9.797556 TTCATCTCTTTCTTCATTTATTGCATG 57.202 29.630 0.00 0.00 0.00 4.06
438 439 7.919091 TCATCTCTTTCTTCATTTATTGCATGC 59.081 33.333 11.82 11.82 0.00 4.06
439 440 6.567050 TCTCTTTCTTCATTTATTGCATGCC 58.433 36.000 16.68 0.00 0.00 4.40
440 441 6.153170 TCTCTTTCTTCATTTATTGCATGCCA 59.847 34.615 16.68 4.04 0.00 4.92
441 442 6.101332 TCTTTCTTCATTTATTGCATGCCAC 58.899 36.000 16.68 0.00 0.00 5.01
442 443 5.402997 TTCTTCATTTATTGCATGCCACA 57.597 34.783 16.68 0.00 0.00 4.17
443 444 5.601583 TCTTCATTTATTGCATGCCACAT 57.398 34.783 16.68 7.29 0.00 3.21
444 445 5.593968 TCTTCATTTATTGCATGCCACATC 58.406 37.500 16.68 0.00 0.00 3.06
445 446 5.127356 TCTTCATTTATTGCATGCCACATCA 59.873 36.000 16.68 0.00 0.00 3.07
446 447 5.538849 TCATTTATTGCATGCCACATCAT 57.461 34.783 16.68 0.00 0.00 2.45
447 448 5.534407 TCATTTATTGCATGCCACATCATC 58.466 37.500 16.68 0.00 0.00 2.92
448 449 5.303333 TCATTTATTGCATGCCACATCATCT 59.697 36.000 16.68 0.00 0.00 2.90
449 450 6.490721 TCATTTATTGCATGCCACATCATCTA 59.509 34.615 16.68 0.00 0.00 1.98
450 451 6.904463 TTTATTGCATGCCACATCATCTAT 57.096 33.333 16.68 0.00 0.00 1.98
451 452 6.904463 TTATTGCATGCCACATCATCTATT 57.096 33.333 16.68 0.00 0.00 1.73
452 453 5.801531 ATTGCATGCCACATCATCTATTT 57.198 34.783 16.68 0.00 0.00 1.40
453 454 6.904463 ATTGCATGCCACATCATCTATTTA 57.096 33.333 16.68 0.00 0.00 1.40
454 455 6.712179 TTGCATGCCACATCATCTATTTAA 57.288 33.333 16.68 0.00 0.00 1.52
455 456 6.075762 TGCATGCCACATCATCTATTTAAC 57.924 37.500 16.68 0.00 0.00 2.01
456 457 5.009911 TGCATGCCACATCATCTATTTAACC 59.990 40.000 16.68 0.00 0.00 2.85
457 458 5.242393 GCATGCCACATCATCTATTTAACCT 59.758 40.000 6.36 0.00 0.00 3.50
458 459 6.430925 GCATGCCACATCATCTATTTAACCTA 59.569 38.462 6.36 0.00 0.00 3.08
459 460 7.361542 GCATGCCACATCATCTATTTAACCTAG 60.362 40.741 6.36 0.00 0.00 3.02
460 461 7.373617 TGCCACATCATCTATTTAACCTAGA 57.626 36.000 0.00 0.00 0.00 2.43
461 462 7.977818 TGCCACATCATCTATTTAACCTAGAT 58.022 34.615 0.00 2.29 36.58 1.98
462 463 9.100197 TGCCACATCATCTATTTAACCTAGATA 57.900 33.333 6.48 0.00 34.84 1.98
479 480 8.998277 ACCTAGATATGTGTGATGTTACTACT 57.002 34.615 0.00 0.00 0.00 2.57
480 481 9.422681 ACCTAGATATGTGTGATGTTACTACTT 57.577 33.333 0.00 0.00 0.00 2.24
484 485 9.944376 AGATATGTGTGATGTTACTACTTTTGT 57.056 29.630 0.00 0.00 0.00 2.83
488 489 8.951787 TGTGTGATGTTACTACTTTTGTTACT 57.048 30.769 0.00 0.00 0.00 2.24
489 490 9.037737 TGTGTGATGTTACTACTTTTGTTACTC 57.962 33.333 0.00 0.00 0.00 2.59
490 491 8.493547 GTGTGATGTTACTACTTTTGTTACTCC 58.506 37.037 0.00 0.00 0.00 3.85
491 492 7.658575 TGTGATGTTACTACTTTTGTTACTCCC 59.341 37.037 0.00 0.00 0.00 4.30
492 493 7.658575 GTGATGTTACTACTTTTGTTACTCCCA 59.341 37.037 0.00 0.00 0.00 4.37
493 494 8.380099 TGATGTTACTACTTTTGTTACTCCCAT 58.620 33.333 0.00 0.00 0.00 4.00
494 495 9.227777 GATGTTACTACTTTTGTTACTCCCATT 57.772 33.333 0.00 0.00 0.00 3.16
495 496 8.385898 TGTTACTACTTTTGTTACTCCCATTG 57.614 34.615 0.00 0.00 0.00 2.82
496 497 7.994334 TGTTACTACTTTTGTTACTCCCATTGT 59.006 33.333 0.00 0.00 0.00 2.71
497 498 6.877611 ACTACTTTTGTTACTCCCATTGTG 57.122 37.500 0.00 0.00 0.00 3.33
498 499 5.768164 ACTACTTTTGTTACTCCCATTGTGG 59.232 40.000 0.00 0.00 37.25 4.17
510 511 3.634397 CCATTGTGGGTAGTCTGATGT 57.366 47.619 0.00 0.00 32.67 3.06
511 512 3.955471 CCATTGTGGGTAGTCTGATGTT 58.045 45.455 0.00 0.00 32.67 2.71
512 513 3.691118 CCATTGTGGGTAGTCTGATGTTG 59.309 47.826 0.00 0.00 32.67 3.33
513 514 4.326826 CATTGTGGGTAGTCTGATGTTGT 58.673 43.478 0.00 0.00 0.00 3.32
514 515 4.431416 TTGTGGGTAGTCTGATGTTGTT 57.569 40.909 0.00 0.00 0.00 2.83
515 516 3.738982 TGTGGGTAGTCTGATGTTGTTG 58.261 45.455 0.00 0.00 0.00 3.33
516 517 3.135712 TGTGGGTAGTCTGATGTTGTTGT 59.864 43.478 0.00 0.00 0.00 3.32
517 518 4.134563 GTGGGTAGTCTGATGTTGTTGTT 58.865 43.478 0.00 0.00 0.00 2.83
518 519 4.578928 GTGGGTAGTCTGATGTTGTTGTTT 59.421 41.667 0.00 0.00 0.00 2.83
519 520 5.067283 GTGGGTAGTCTGATGTTGTTGTTTT 59.933 40.000 0.00 0.00 0.00 2.43
520 521 5.654650 TGGGTAGTCTGATGTTGTTGTTTTT 59.345 36.000 0.00 0.00 0.00 1.94
542 543 3.825143 GTAGTATACAAAGCGGGGGAA 57.175 47.619 5.50 0.00 42.43 3.97
543 544 4.141233 GTAGTATACAAAGCGGGGGAAA 57.859 45.455 5.50 0.00 42.43 3.13
544 545 3.724732 AGTATACAAAGCGGGGGAAAA 57.275 42.857 5.50 0.00 0.00 2.29
545 546 4.245251 AGTATACAAAGCGGGGGAAAAT 57.755 40.909 5.50 0.00 0.00 1.82
546 547 4.204799 AGTATACAAAGCGGGGGAAAATC 58.795 43.478 5.50 0.00 0.00 2.17
547 548 1.842052 TACAAAGCGGGGGAAAATCC 58.158 50.000 0.00 0.00 35.23 3.01
548 549 0.114364 ACAAAGCGGGGGAAAATCCT 59.886 50.000 0.00 0.00 36.57 3.24
549 550 1.356398 ACAAAGCGGGGGAAAATCCTA 59.644 47.619 0.00 0.00 36.57 2.94
550 551 2.225167 ACAAAGCGGGGGAAAATCCTAA 60.225 45.455 0.00 0.00 36.57 2.69
551 552 2.829120 CAAAGCGGGGGAAAATCCTAAA 59.171 45.455 0.00 0.00 36.57 1.85
552 553 2.911552 AGCGGGGGAAAATCCTAAAA 57.088 45.000 0.00 0.00 36.57 1.52
553 554 3.178412 AGCGGGGGAAAATCCTAAAAA 57.822 42.857 0.00 0.00 36.57 1.94
554 555 3.719871 AGCGGGGGAAAATCCTAAAAAT 58.280 40.909 0.00 0.00 36.57 1.82
555 556 3.450817 AGCGGGGGAAAATCCTAAAAATG 59.549 43.478 0.00 0.00 36.57 2.32
572 573 2.378211 TGGATAGCCAACCGAACCA 58.622 52.632 0.00 0.00 42.49 3.67
584 585 4.022762 CCAACCGAACCATTTGAACATACA 60.023 41.667 0.00 0.00 0.00 2.29
600 601 2.373540 TACACCCCGTCTTCAAATCG 57.626 50.000 0.00 0.00 0.00 3.34
601 602 0.321298 ACACCCCGTCTTCAAATCGG 60.321 55.000 0.00 0.00 43.30 4.18
645 651 4.963276 TCAAAGGTAATCAGCGGAAATG 57.037 40.909 0.00 0.00 0.00 2.32
890 899 2.701780 GCCGGAGCAACGAGAGAGA 61.702 63.158 5.05 0.00 39.53 3.10
891 900 1.431440 CCGGAGCAACGAGAGAGAG 59.569 63.158 0.00 0.00 35.47 3.20
892 901 1.027255 CCGGAGCAACGAGAGAGAGA 61.027 60.000 0.00 0.00 35.47 3.10
893 902 0.376852 CGGAGCAACGAGAGAGAGAG 59.623 60.000 0.00 0.00 35.47 3.20
894 903 1.745232 GGAGCAACGAGAGAGAGAGA 58.255 55.000 0.00 0.00 0.00 3.10
895 904 1.670811 GGAGCAACGAGAGAGAGAGAG 59.329 57.143 0.00 0.00 0.00 3.20
896 905 2.627945 GAGCAACGAGAGAGAGAGAGA 58.372 52.381 0.00 0.00 0.00 3.10
897 906 2.609459 GAGCAACGAGAGAGAGAGAGAG 59.391 54.545 0.00 0.00 0.00 3.20
898 907 2.236146 AGCAACGAGAGAGAGAGAGAGA 59.764 50.000 0.00 0.00 0.00 3.10
899 908 2.609459 GCAACGAGAGAGAGAGAGAGAG 59.391 54.545 0.00 0.00 0.00 3.20
900 909 3.678806 GCAACGAGAGAGAGAGAGAGAGA 60.679 52.174 0.00 0.00 0.00 3.10
901 910 4.115516 CAACGAGAGAGAGAGAGAGAGAG 58.884 52.174 0.00 0.00 0.00 3.20
902 911 3.632333 ACGAGAGAGAGAGAGAGAGAGA 58.368 50.000 0.00 0.00 0.00 3.10
903 912 3.634448 ACGAGAGAGAGAGAGAGAGAGAG 59.366 52.174 0.00 0.00 0.00 3.20
904 913 3.551863 CGAGAGAGAGAGAGAGAGAGAGC 60.552 56.522 0.00 0.00 0.00 4.09
917 926 1.227321 GAGAGCAGCAGCAGCCTAG 60.227 63.158 6.10 0.00 45.49 3.02
1229 1238 1.202279 CGAGCTCTGTGAGTCATCCAG 60.202 57.143 12.85 0.00 31.39 3.86
1250 1261 4.389382 CAGCGATCTCATCATTCTTCCATC 59.611 45.833 0.00 0.00 0.00 3.51
1293 1319 1.853510 CGTGCGTACTTGTGTTGTGTA 59.146 47.619 1.24 0.00 0.00 2.90
1331 1362 1.059098 TGTGTCCTGCAACCTGATCT 58.941 50.000 0.00 0.00 0.00 2.75
1332 1363 1.421268 TGTGTCCTGCAACCTGATCTT 59.579 47.619 0.00 0.00 0.00 2.40
1655 1686 3.998672 TCTTCACCGGGCACGTCC 61.999 66.667 7.97 0.00 38.78 4.79
1766 1797 6.435904 AGTGATCAGTTTGCTCTTCTAGTAGT 59.564 38.462 0.00 0.00 0.00 2.73
1826 1857 4.278669 TCTCTATTAGAGTTCATCCGGTGC 59.721 45.833 18.06 0.00 42.83 5.01
1834 1865 2.688958 AGTTCATCCGGTGCTACTAGTC 59.311 50.000 0.00 0.00 0.00 2.59
1847 1878 5.343593 GTGCTACTAGTCATTCGTGATATGC 59.656 44.000 0.00 0.00 0.00 3.14
1850 1881 6.964370 GCTACTAGTCATTCGTGATATGCTAG 59.036 42.308 0.00 0.00 36.67 3.42
1851 1882 6.885952 ACTAGTCATTCGTGATATGCTAGT 57.114 37.500 0.00 0.00 37.69 2.57
1852 1883 7.981102 ACTAGTCATTCGTGATATGCTAGTA 57.019 36.000 13.31 0.00 39.00 1.82
1853 1884 7.808672 ACTAGTCATTCGTGATATGCTAGTAC 58.191 38.462 13.31 0.00 39.00 2.73
1854 1885 6.885952 AGTCATTCGTGATATGCTAGTACT 57.114 37.500 0.00 0.00 0.00 2.73
1998 2030 3.735820 GCGATACTGTGATCCGTGGTAAA 60.736 47.826 0.00 0.00 0.00 2.01
1999 2031 3.795101 CGATACTGTGATCCGTGGTAAAC 59.205 47.826 0.00 0.00 0.00 2.01
2003 2035 4.457466 ACTGTGATCCGTGGTAAACTTTT 58.543 39.130 0.00 0.00 0.00 2.27
2004 2036 4.514066 ACTGTGATCCGTGGTAAACTTTTC 59.486 41.667 0.00 0.00 0.00 2.29
2005 2037 3.495377 TGTGATCCGTGGTAAACTTTTCG 59.505 43.478 0.00 0.00 0.00 3.46
2006 2038 3.742369 GTGATCCGTGGTAAACTTTTCGA 59.258 43.478 0.00 0.00 0.00 3.71
2007 2039 3.991773 TGATCCGTGGTAAACTTTTCGAG 59.008 43.478 0.00 0.00 0.00 4.04
2023 2055 6.264518 ACTTTTCGAGGTTTACATCAATGGTT 59.735 34.615 0.00 0.00 0.00 3.67
2024 2056 7.446013 ACTTTTCGAGGTTTACATCAATGGTTA 59.554 33.333 0.00 0.00 0.00 2.85
2099 2133 6.612247 TGAGTTTACATTTGTCGTGATTGT 57.388 33.333 0.00 0.00 0.00 2.71
2116 2150 5.348451 GTGATTGTTTTTGACTGCACAAGTT 59.652 36.000 0.00 0.00 40.07 2.66
2235 2285 6.111382 CACATCCATGTCTCAGTTAGTGAAT 58.889 40.000 0.00 0.00 39.39 2.57
2445 2495 7.445945 AGGAATAGATGTAGAGTGGCATTTAC 58.554 38.462 0.00 0.00 0.00 2.01
2452 2502 1.993369 GAGTGGCATTTACAGGCGGC 61.993 60.000 0.00 0.00 0.00 6.53
2691 2741 6.409524 AGAAAATGCAGATTTGGAGAAACA 57.590 33.333 5.10 0.00 31.83 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.325860 TACCGGACATGGCTTAGGGT 60.326 55.000 9.46 3.92 0.00 4.34
1 2 0.393077 CTACCGGACATGGCTTAGGG 59.607 60.000 9.46 0.00 0.00 3.53
2 3 0.249911 GCTACCGGACATGGCTTAGG 60.250 60.000 9.46 2.29 0.00 2.69
3 4 0.464036 TGCTACCGGACATGGCTTAG 59.536 55.000 9.46 0.00 0.00 2.18
4 5 0.464036 CTGCTACCGGACATGGCTTA 59.536 55.000 9.46 0.00 0.00 3.09
5 6 1.221840 CTGCTACCGGACATGGCTT 59.778 57.895 9.46 0.00 0.00 4.35
6 7 2.903357 CTGCTACCGGACATGGCT 59.097 61.111 9.46 0.00 0.00 4.75
7 8 2.897350 GCTGCTACCGGACATGGC 60.897 66.667 9.46 0.00 0.00 4.40
8 9 2.586079 CGCTGCTACCGGACATGG 60.586 66.667 9.46 0.00 0.00 3.66
9 10 1.878522 GACGCTGCTACCGGACATG 60.879 63.158 9.46 1.74 0.00 3.21
10 11 2.494918 GACGCTGCTACCGGACAT 59.505 61.111 9.46 0.00 0.00 3.06
11 12 4.111016 CGACGCTGCTACCGGACA 62.111 66.667 9.46 1.80 0.00 4.02
12 13 3.621892 AACGACGCTGCTACCGGAC 62.622 63.158 9.46 0.00 0.00 4.79
13 14 3.367743 AACGACGCTGCTACCGGA 61.368 61.111 9.46 0.00 0.00 5.14
14 15 3.179265 CAACGACGCTGCTACCGG 61.179 66.667 0.00 0.00 0.00 5.28
15 16 2.430244 ACAACGACGCTGCTACCG 60.430 61.111 0.00 0.84 0.00 4.02
16 17 2.434134 CGACAACGACGCTGCTACC 61.434 63.158 0.00 0.00 42.66 3.18
17 18 1.662845 GACGACAACGACGCTGCTAC 61.663 60.000 0.00 0.00 42.66 3.58
18 19 1.441515 GACGACAACGACGCTGCTA 60.442 57.895 0.00 0.00 42.66 3.49
19 20 2.729862 GACGACAACGACGCTGCT 60.730 61.111 0.00 0.00 42.66 4.24
25 26 2.458629 GAACGCGACGACAACGAC 59.541 61.111 15.93 0.00 42.66 4.34
26 27 2.666715 AAGGAACGCGACGACAACGA 62.667 55.000 15.93 0.00 42.66 3.85
27 28 2.194591 GAAGGAACGCGACGACAACG 62.195 60.000 15.93 0.00 45.75 4.10
28 29 0.938168 AGAAGGAACGCGACGACAAC 60.938 55.000 15.93 0.00 0.00 3.32
29 30 0.249155 AAGAAGGAACGCGACGACAA 60.249 50.000 15.93 0.00 0.00 3.18
30 31 0.937699 CAAGAAGGAACGCGACGACA 60.938 55.000 15.93 0.00 0.00 4.35
31 32 0.662374 TCAAGAAGGAACGCGACGAC 60.662 55.000 15.93 0.00 0.00 4.34
32 33 0.031043 TTCAAGAAGGAACGCGACGA 59.969 50.000 15.93 0.00 0.00 4.20
33 34 0.435008 CTTCAAGAAGGAACGCGACG 59.565 55.000 15.93 0.00 34.87 5.12
43 44 3.217626 ACCAAGCAACTCCTTCAAGAAG 58.782 45.455 2.83 2.83 38.14 2.85
44 45 3.297134 ACCAAGCAACTCCTTCAAGAA 57.703 42.857 0.00 0.00 0.00 2.52
45 46 4.326826 CATACCAAGCAACTCCTTCAAGA 58.673 43.478 0.00 0.00 0.00 3.02
46 47 3.119708 GCATACCAAGCAACTCCTTCAAG 60.120 47.826 0.00 0.00 0.00 3.02
47 48 2.819608 GCATACCAAGCAACTCCTTCAA 59.180 45.455 0.00 0.00 0.00 2.69
48 49 2.436417 GCATACCAAGCAACTCCTTCA 58.564 47.619 0.00 0.00 0.00 3.02
49 50 1.398390 CGCATACCAAGCAACTCCTTC 59.602 52.381 0.00 0.00 0.00 3.46
50 51 1.453155 CGCATACCAAGCAACTCCTT 58.547 50.000 0.00 0.00 0.00 3.36
51 52 0.392998 CCGCATACCAAGCAACTCCT 60.393 55.000 0.00 0.00 0.00 3.69
52 53 1.993369 GCCGCATACCAAGCAACTCC 61.993 60.000 0.00 0.00 0.00 3.85
53 54 1.429423 GCCGCATACCAAGCAACTC 59.571 57.895 0.00 0.00 0.00 3.01
54 55 2.398554 CGCCGCATACCAAGCAACT 61.399 57.895 0.00 0.00 0.00 3.16
55 56 2.100216 CGCCGCATACCAAGCAAC 59.900 61.111 0.00 0.00 0.00 4.17
56 57 1.519751 AAACGCCGCATACCAAGCAA 61.520 50.000 0.00 0.00 0.00 3.91
57 58 1.917782 GAAACGCCGCATACCAAGCA 61.918 55.000 0.00 0.00 0.00 3.91
58 59 1.226295 GAAACGCCGCATACCAAGC 60.226 57.895 0.00 0.00 0.00 4.01
59 60 1.060308 CGAAACGCCGCATACCAAG 59.940 57.895 0.00 0.00 0.00 3.61
60 61 2.392181 CCGAAACGCCGCATACCAA 61.392 57.895 0.00 0.00 0.00 3.67
61 62 2.816083 CCGAAACGCCGCATACCA 60.816 61.111 0.00 0.00 0.00 3.25
62 63 3.569690 CCCGAAACGCCGCATACC 61.570 66.667 0.00 0.00 0.00 2.73
63 64 1.885850 ATCCCGAAACGCCGCATAC 60.886 57.895 0.00 0.00 0.00 2.39
64 65 1.885388 CATCCCGAAACGCCGCATA 60.885 57.895 0.00 0.00 0.00 3.14
65 66 3.202001 CATCCCGAAACGCCGCAT 61.202 61.111 0.00 0.00 0.00 4.73
68 69 2.202824 TAGCATCCCGAAACGCCG 60.203 61.111 0.00 0.00 0.00 6.46
69 70 1.887707 CCTAGCATCCCGAAACGCC 60.888 63.158 0.00 0.00 0.00 5.68
70 71 0.876342 CTCCTAGCATCCCGAAACGC 60.876 60.000 0.00 0.00 0.00 4.84
71 72 0.876342 GCTCCTAGCATCCCGAAACG 60.876 60.000 0.00 0.00 41.89 3.60
72 73 0.876342 CGCTCCTAGCATCCCGAAAC 60.876 60.000 0.00 0.00 42.58 2.78
73 74 1.327690 ACGCTCCTAGCATCCCGAAA 61.328 55.000 0.00 0.00 42.58 3.46
74 75 1.756950 ACGCTCCTAGCATCCCGAA 60.757 57.895 0.00 0.00 42.58 4.30
75 76 2.123854 ACGCTCCTAGCATCCCGA 60.124 61.111 0.00 0.00 42.58 5.14
76 77 2.028190 CACGCTCCTAGCATCCCG 59.972 66.667 0.00 0.00 42.58 5.14
77 78 2.423446 CCACGCTCCTAGCATCCC 59.577 66.667 0.00 0.00 42.58 3.85
78 79 1.227380 CACCACGCTCCTAGCATCC 60.227 63.158 0.00 0.00 42.58 3.51
79 80 1.227380 CCACCACGCTCCTAGCATC 60.227 63.158 0.00 0.00 42.58 3.91
80 81 1.264749 TTCCACCACGCTCCTAGCAT 61.265 55.000 0.00 0.00 42.58 3.79
81 82 1.264749 ATTCCACCACGCTCCTAGCA 61.265 55.000 0.00 0.00 42.58 3.49
82 83 0.107654 AATTCCACCACGCTCCTAGC 60.108 55.000 0.00 0.00 38.02 3.42
83 84 1.482593 AGAATTCCACCACGCTCCTAG 59.517 52.381 0.65 0.00 0.00 3.02
84 85 1.480954 GAGAATTCCACCACGCTCCTA 59.519 52.381 0.65 0.00 0.00 2.94
85 86 0.250513 GAGAATTCCACCACGCTCCT 59.749 55.000 0.65 0.00 0.00 3.69
86 87 0.744771 GGAGAATTCCACCACGCTCC 60.745 60.000 12.56 0.00 43.45 4.70
87 88 1.084370 CGGAGAATTCCACCACGCTC 61.084 60.000 16.16 0.00 44.26 5.03
88 89 1.079127 CGGAGAATTCCACCACGCT 60.079 57.895 16.16 0.00 44.26 5.07
89 90 2.106683 CCGGAGAATTCCACCACGC 61.107 63.158 16.16 0.00 44.26 5.34
90 91 2.106683 GCCGGAGAATTCCACCACG 61.107 63.158 5.05 8.36 44.26 4.94
91 92 2.106683 CGCCGGAGAATTCCACCAC 61.107 63.158 5.05 8.72 44.26 4.16
92 93 2.267642 CGCCGGAGAATTCCACCA 59.732 61.111 5.05 0.00 44.26 4.17
93 94 2.513897 CCGCCGGAGAATTCCACC 60.514 66.667 5.05 5.56 44.26 4.61
94 95 2.513897 CCCGCCGGAGAATTCCAC 60.514 66.667 5.05 0.00 44.26 4.02
95 96 4.483243 GCCCGCCGGAGAATTCCA 62.483 66.667 5.05 0.00 44.26 3.53
114 115 1.357258 AAGATGACTCGCAAGCGCTG 61.357 55.000 12.58 6.58 39.59 5.18
115 116 1.079543 AAGATGACTCGCAAGCGCT 60.080 52.632 2.64 2.64 39.59 5.92
116 117 1.346538 GAAGATGACTCGCAAGCGC 59.653 57.895 9.97 0.00 39.59 5.92
117 118 1.284657 ATGAAGATGACTCGCAAGCG 58.715 50.000 8.36 8.36 41.35 4.68
118 119 3.754188 AAATGAAGATGACTCGCAAGC 57.246 42.857 0.00 0.00 37.18 4.01
119 120 5.455392 ACAAAAATGAAGATGACTCGCAAG 58.545 37.500 0.00 0.00 0.00 4.01
120 121 5.437289 ACAAAAATGAAGATGACTCGCAA 57.563 34.783 0.00 0.00 0.00 4.85
121 122 5.008514 TCAACAAAAATGAAGATGACTCGCA 59.991 36.000 0.00 0.00 0.00 5.10
122 123 5.451908 TCAACAAAAATGAAGATGACTCGC 58.548 37.500 0.00 0.00 0.00 5.03
123 124 6.744537 GGATCAACAAAAATGAAGATGACTCG 59.255 38.462 0.00 0.00 0.00 4.18
124 125 6.744537 CGGATCAACAAAAATGAAGATGACTC 59.255 38.462 0.00 0.00 0.00 3.36
125 126 6.615088 CGGATCAACAAAAATGAAGATGACT 58.385 36.000 0.00 0.00 0.00 3.41
126 127 5.287035 GCGGATCAACAAAAATGAAGATGAC 59.713 40.000 0.00 0.00 0.00 3.06
127 128 5.401550 GCGGATCAACAAAAATGAAGATGA 58.598 37.500 0.00 0.00 0.00 2.92
128 129 4.563976 GGCGGATCAACAAAAATGAAGATG 59.436 41.667 0.00 0.00 0.00 2.90
129 130 4.675146 CGGCGGATCAACAAAAATGAAGAT 60.675 41.667 0.00 0.00 0.00 2.40
130 131 3.365868 CGGCGGATCAACAAAAATGAAGA 60.366 43.478 0.00 0.00 0.00 2.87
131 132 2.916716 CGGCGGATCAACAAAAATGAAG 59.083 45.455 0.00 0.00 0.00 3.02
132 133 2.294791 ACGGCGGATCAACAAAAATGAA 59.705 40.909 13.24 0.00 0.00 2.57
133 134 1.883275 ACGGCGGATCAACAAAAATGA 59.117 42.857 13.24 0.00 0.00 2.57
134 135 2.346099 ACGGCGGATCAACAAAAATG 57.654 45.000 13.24 0.00 0.00 2.32
135 136 2.035321 ACAACGGCGGATCAACAAAAAT 59.965 40.909 13.24 0.00 0.00 1.82
136 137 1.405821 ACAACGGCGGATCAACAAAAA 59.594 42.857 13.24 0.00 0.00 1.94
137 138 1.002251 GACAACGGCGGATCAACAAAA 60.002 47.619 13.24 0.00 0.00 2.44
138 139 0.589223 GACAACGGCGGATCAACAAA 59.411 50.000 13.24 0.00 0.00 2.83
139 140 1.561717 CGACAACGGCGGATCAACAA 61.562 55.000 13.24 0.00 35.72 2.83
140 141 2.024868 CGACAACGGCGGATCAACA 61.025 57.895 13.24 0.00 35.72 3.33
141 142 2.776072 CGACAACGGCGGATCAAC 59.224 61.111 13.24 0.00 35.72 3.18
192 193 0.829333 AGCACATGCACACCCAAAAA 59.171 45.000 6.64 0.00 45.16 1.94
193 194 0.104487 CAGCACATGCACACCCAAAA 59.896 50.000 6.64 0.00 45.16 2.44
194 195 1.740905 CAGCACATGCACACCCAAA 59.259 52.632 6.64 0.00 45.16 3.28
195 196 3.445888 CAGCACATGCACACCCAA 58.554 55.556 6.64 0.00 45.16 4.12
204 205 1.199327 CTGGAGTGAAAGCAGCACATG 59.801 52.381 0.00 0.00 38.70 3.21
205 206 1.531423 CTGGAGTGAAAGCAGCACAT 58.469 50.000 0.00 0.00 38.70 3.21
206 207 1.168407 GCTGGAGTGAAAGCAGCACA 61.168 55.000 0.00 0.00 39.31 4.57
207 208 1.168407 TGCTGGAGTGAAAGCAGCAC 61.168 55.000 0.00 0.00 44.26 4.40
208 209 1.148949 TGCTGGAGTGAAAGCAGCA 59.851 52.632 0.00 0.00 44.26 4.41
209 210 4.069869 TGCTGGAGTGAAAGCAGC 57.930 55.556 0.00 0.00 44.26 5.25
211 212 1.228245 GGGTGCTGGAGTGAAAGCA 60.228 57.895 0.00 0.00 46.84 3.91
212 213 1.228245 TGGGTGCTGGAGTGAAAGC 60.228 57.895 0.00 0.00 39.96 3.51
213 214 0.179020 TGTGGGTGCTGGAGTGAAAG 60.179 55.000 0.00 0.00 0.00 2.62
214 215 0.257328 TTGTGGGTGCTGGAGTGAAA 59.743 50.000 0.00 0.00 0.00 2.69
215 216 0.478072 ATTGTGGGTGCTGGAGTGAA 59.522 50.000 0.00 0.00 0.00 3.18
216 217 0.250858 CATTGTGGGTGCTGGAGTGA 60.251 55.000 0.00 0.00 0.00 3.41
217 218 1.246056 CCATTGTGGGTGCTGGAGTG 61.246 60.000 0.00 0.00 32.67 3.51
218 219 1.075482 CCATTGTGGGTGCTGGAGT 59.925 57.895 0.00 0.00 32.67 3.85
219 220 4.007457 CCATTGTGGGTGCTGGAG 57.993 61.111 0.00 0.00 32.67 3.86
228 229 6.235231 AGTCTATGTTACTACCCATTGTGG 57.765 41.667 0.00 0.00 37.25 4.17
229 230 8.008513 ACTAGTCTATGTTACTACCCATTGTG 57.991 38.462 0.00 0.00 0.00 3.33
230 231 9.705103 TTACTAGTCTATGTTACTACCCATTGT 57.295 33.333 0.00 0.00 0.00 2.71
231 232 9.962783 GTTACTAGTCTATGTTACTACCCATTG 57.037 37.037 0.00 0.00 0.00 2.82
232 233 9.705103 TGTTACTAGTCTATGTTACTACCCATT 57.295 33.333 0.00 0.00 0.00 3.16
233 234 9.878737 ATGTTACTAGTCTATGTTACTACCCAT 57.121 33.333 0.00 0.00 0.00 4.00
234 235 9.128404 CATGTTACTAGTCTATGTTACTACCCA 57.872 37.037 0.00 0.00 0.00 4.51
235 236 8.081025 GCATGTTACTAGTCTATGTTACTACCC 58.919 40.741 0.00 0.00 0.00 3.69
236 237 8.081025 GGCATGTTACTAGTCTATGTTACTACC 58.919 40.741 0.00 0.00 0.00 3.18
237 238 8.081025 GGGCATGTTACTAGTCTATGTTACTAC 58.919 40.741 0.00 0.00 0.00 2.73
238 239 7.781219 TGGGCATGTTACTAGTCTATGTTACTA 59.219 37.037 0.00 0.00 0.00 1.82
239 240 6.610020 TGGGCATGTTACTAGTCTATGTTACT 59.390 38.462 0.00 0.00 0.00 2.24
240 241 6.812998 TGGGCATGTTACTAGTCTATGTTAC 58.187 40.000 0.00 0.00 0.00 2.50
241 242 7.441836 CATGGGCATGTTACTAGTCTATGTTA 58.558 38.462 0.00 0.00 34.23 2.41
242 243 5.950544 TGGGCATGTTACTAGTCTATGTT 57.049 39.130 0.00 0.00 0.00 2.71
243 244 5.858381 CATGGGCATGTTACTAGTCTATGT 58.142 41.667 0.00 0.00 34.23 2.29
257 258 5.858381 ACATAGAGTAGTAACATGGGCATG 58.142 41.667 0.00 0.00 44.15 4.06
258 259 6.500589 AACATAGAGTAGTAACATGGGCAT 57.499 37.500 0.00 0.00 0.00 4.40
259 260 5.950544 AACATAGAGTAGTAACATGGGCA 57.049 39.130 0.00 0.00 0.00 5.36
260 261 7.052142 AGTAACATAGAGTAGTAACATGGGC 57.948 40.000 0.00 0.00 0.00 5.36
261 262 8.574737 GGTAGTAACATAGAGTAGTAACATGGG 58.425 40.741 0.00 0.00 0.00 4.00
262 263 9.352191 AGGTAGTAACATAGAGTAGTAACATGG 57.648 37.037 0.00 0.00 0.00 3.66
272 273 8.384718 CCCACTATAGAGGTAGTAACATAGAGT 58.615 40.741 14.29 0.00 33.29 3.24
273 274 7.830201 CCCCACTATAGAGGTAGTAACATAGAG 59.170 44.444 14.29 0.00 33.29 2.43
274 275 7.518653 TCCCCACTATAGAGGTAGTAACATAGA 59.481 40.741 14.29 0.00 33.29 1.98
275 276 7.696981 TCCCCACTATAGAGGTAGTAACATAG 58.303 42.308 14.29 0.00 33.29 2.23
276 277 7.296628 ACTCCCCACTATAGAGGTAGTAACATA 59.703 40.741 14.29 0.00 33.29 2.29
277 278 6.104392 ACTCCCCACTATAGAGGTAGTAACAT 59.896 42.308 14.29 0.00 33.29 2.71
278 279 5.434376 ACTCCCCACTATAGAGGTAGTAACA 59.566 44.000 14.29 0.00 33.29 2.41
279 280 5.951204 ACTCCCCACTATAGAGGTAGTAAC 58.049 45.833 14.29 0.00 33.29 2.50
280 281 7.129349 TGTTACTCCCCACTATAGAGGTAGTAA 59.871 40.741 23.15 23.15 33.91 2.24
281 282 6.621098 TGTTACTCCCCACTATAGAGGTAGTA 59.379 42.308 17.42 17.42 33.29 1.82
282 283 5.434376 TGTTACTCCCCACTATAGAGGTAGT 59.566 44.000 18.82 18.82 35.34 2.73
283 284 5.950023 TGTTACTCCCCACTATAGAGGTAG 58.050 45.833 14.29 12.87 31.70 3.18
284 285 5.999987 TGTTACTCCCCACTATAGAGGTA 57.000 43.478 14.29 2.62 31.70 3.08
285 286 4.894252 TGTTACTCCCCACTATAGAGGT 57.106 45.455 14.29 0.00 31.70 3.85
286 287 6.954684 ACATATGTTACTCCCCACTATAGAGG 59.045 42.308 6.78 8.10 31.70 3.69
287 288 7.451877 ACACATATGTTACTCCCCACTATAGAG 59.548 40.741 5.37 0.00 34.46 2.43
288 289 7.232737 CACACATATGTTACTCCCCACTATAGA 59.767 40.741 5.37 0.00 36.72 1.98
289 290 7.378966 CACACATATGTTACTCCCCACTATAG 58.621 42.308 5.37 0.00 36.72 1.31
290 291 6.269077 CCACACATATGTTACTCCCCACTATA 59.731 42.308 5.37 0.00 36.72 1.31
291 292 5.071788 CCACACATATGTTACTCCCCACTAT 59.928 44.000 5.37 0.00 36.72 2.12
292 293 4.407621 CCACACATATGTTACTCCCCACTA 59.592 45.833 5.37 0.00 36.72 2.74
293 294 3.199946 CCACACATATGTTACTCCCCACT 59.800 47.826 5.37 0.00 36.72 4.00
294 295 3.054655 ACCACACATATGTTACTCCCCAC 60.055 47.826 5.37 0.00 36.72 4.61
295 296 3.186283 ACCACACATATGTTACTCCCCA 58.814 45.455 5.37 0.00 36.72 4.96
296 297 3.926058 ACCACACATATGTTACTCCCC 57.074 47.619 5.37 0.00 36.72 4.81
297 298 5.736813 TGTTACCACACATATGTTACTCCC 58.263 41.667 5.37 0.00 36.72 4.30
298 299 6.260050 CCATGTTACCACACATATGTTACTCC 59.740 42.308 5.37 0.00 36.72 3.85
299 300 7.045416 TCCATGTTACCACACATATGTTACTC 58.955 38.462 5.37 0.00 36.72 2.59
300 301 6.953101 TCCATGTTACCACACATATGTTACT 58.047 36.000 5.37 0.00 36.72 2.24
301 302 6.238374 GCTCCATGTTACCACACATATGTTAC 60.238 42.308 5.37 0.00 36.72 2.50
302 303 5.820423 GCTCCATGTTACCACACATATGTTA 59.180 40.000 5.37 0.00 36.72 2.41
303 304 4.640201 GCTCCATGTTACCACACATATGTT 59.360 41.667 5.37 0.00 36.72 2.71
304 305 4.199310 GCTCCATGTTACCACACATATGT 58.801 43.478 1.41 1.41 40.80 2.29
305 306 4.035558 GTGCTCCATGTTACCACACATATG 59.964 45.833 0.00 0.00 35.51 1.78
306 307 4.080356 AGTGCTCCATGTTACCACACATAT 60.080 41.667 0.00 0.00 35.51 1.78
307 308 3.263170 AGTGCTCCATGTTACCACACATA 59.737 43.478 0.00 0.00 35.51 2.29
308 309 2.040278 AGTGCTCCATGTTACCACACAT 59.960 45.455 0.00 0.00 37.93 3.21
309 310 1.419762 AGTGCTCCATGTTACCACACA 59.580 47.619 0.00 0.00 35.03 3.72
310 311 2.185004 AGTGCTCCATGTTACCACAC 57.815 50.000 0.00 0.00 35.03 3.82
311 312 2.105649 TGAAGTGCTCCATGTTACCACA 59.894 45.455 0.00 0.00 37.31 4.17
312 313 2.778299 TGAAGTGCTCCATGTTACCAC 58.222 47.619 0.00 0.00 0.00 4.16
313 314 3.719268 ATGAAGTGCTCCATGTTACCA 57.281 42.857 0.00 0.00 0.00 3.25
314 315 6.699575 ATAAATGAAGTGCTCCATGTTACC 57.300 37.500 0.00 0.00 0.00 2.85
315 316 8.345565 CCTAATAAATGAAGTGCTCCATGTTAC 58.654 37.037 0.00 0.00 0.00 2.50
316 317 7.013274 GCCTAATAAATGAAGTGCTCCATGTTA 59.987 37.037 0.00 0.00 0.00 2.41
317 318 6.183360 GCCTAATAAATGAAGTGCTCCATGTT 60.183 38.462 0.00 0.00 0.00 2.71
318 319 5.300286 GCCTAATAAATGAAGTGCTCCATGT 59.700 40.000 0.00 0.00 0.00 3.21
319 320 5.533903 AGCCTAATAAATGAAGTGCTCCATG 59.466 40.000 0.00 0.00 0.00 3.66
320 321 5.699143 AGCCTAATAAATGAAGTGCTCCAT 58.301 37.500 0.00 0.00 0.00 3.41
321 322 5.116084 AGCCTAATAAATGAAGTGCTCCA 57.884 39.130 0.00 0.00 0.00 3.86
322 323 8.314751 TCTATAGCCTAATAAATGAAGTGCTCC 58.685 37.037 0.00 0.00 0.00 4.70
323 324 9.883142 ATCTATAGCCTAATAAATGAAGTGCTC 57.117 33.333 0.00 0.00 0.00 4.26
332 333 9.892130 GCAAGGTGTATCTATAGCCTAATAAAT 57.108 33.333 0.00 0.00 0.00 1.40
333 334 8.319146 GGCAAGGTGTATCTATAGCCTAATAAA 58.681 37.037 0.00 0.00 37.89 1.40
334 335 7.848128 GGCAAGGTGTATCTATAGCCTAATAA 58.152 38.462 0.00 0.00 37.89 1.40
335 336 7.419711 GGCAAGGTGTATCTATAGCCTAATA 57.580 40.000 0.00 0.00 37.89 0.98
336 337 6.301169 GGCAAGGTGTATCTATAGCCTAAT 57.699 41.667 0.00 0.00 37.89 1.73
337 338 5.740290 GGCAAGGTGTATCTATAGCCTAA 57.260 43.478 0.00 0.00 37.89 2.69
339 340 3.863086 AGGCAAGGTGTATCTATAGCCT 58.137 45.455 0.00 0.00 45.71 4.58
340 341 4.040461 TCAAGGCAAGGTGTATCTATAGCC 59.960 45.833 0.00 0.00 41.08 3.93
341 342 5.215252 TCAAGGCAAGGTGTATCTATAGC 57.785 43.478 0.00 0.00 0.00 2.97
342 343 8.535335 ACATATCAAGGCAAGGTGTATCTATAG 58.465 37.037 0.00 0.00 0.00 1.31
343 344 8.314021 CACATATCAAGGCAAGGTGTATCTATA 58.686 37.037 0.00 0.00 0.00 1.31
344 345 7.164122 CACATATCAAGGCAAGGTGTATCTAT 58.836 38.462 0.00 0.00 0.00 1.98
345 346 6.099701 ACACATATCAAGGCAAGGTGTATCTA 59.900 38.462 0.00 0.00 36.36 1.98
346 347 5.104360 ACACATATCAAGGCAAGGTGTATCT 60.104 40.000 0.00 0.00 36.36 1.98
347 348 5.008019 CACACATATCAAGGCAAGGTGTATC 59.992 44.000 0.00 0.00 36.36 2.24
348 349 4.883585 CACACATATCAAGGCAAGGTGTAT 59.116 41.667 0.00 0.00 36.36 2.29
349 350 4.019771 TCACACATATCAAGGCAAGGTGTA 60.020 41.667 0.00 0.00 36.36 2.90
350 351 3.084039 CACACATATCAAGGCAAGGTGT 58.916 45.455 0.00 0.00 38.42 4.16
351 352 3.346315 TCACACATATCAAGGCAAGGTG 58.654 45.455 0.00 0.00 0.00 4.00
352 353 3.719268 TCACACATATCAAGGCAAGGT 57.281 42.857 0.00 0.00 0.00 3.50
353 354 3.949754 ACATCACACATATCAAGGCAAGG 59.050 43.478 0.00 0.00 0.00 3.61
354 355 5.571784 AACATCACACATATCAAGGCAAG 57.428 39.130 0.00 0.00 0.00 4.01
355 356 6.179756 AGTAACATCACACATATCAAGGCAA 58.820 36.000 0.00 0.00 0.00 4.52
356 357 5.744171 AGTAACATCACACATATCAAGGCA 58.256 37.500 0.00 0.00 0.00 4.75
357 358 5.817296 TGAGTAACATCACACATATCAAGGC 59.183 40.000 0.00 0.00 0.00 4.35
358 359 8.982685 GTATGAGTAACATCACACATATCAAGG 58.017 37.037 0.00 0.00 40.07 3.61
359 360 9.755804 AGTATGAGTAACATCACACATATCAAG 57.244 33.333 0.00 0.00 40.07 3.02
365 366 9.409918 ACTACTAGTATGAGTAACATCACACAT 57.590 33.333 2.33 0.00 40.07 3.21
366 367 8.803397 ACTACTAGTATGAGTAACATCACACA 57.197 34.615 2.33 0.00 40.07 3.72
411 412 9.797556 CATGCAATAAATGAAGAAAGAGATGAA 57.202 29.630 0.00 0.00 0.00 2.57
412 413 7.919091 GCATGCAATAAATGAAGAAAGAGATGA 59.081 33.333 14.21 0.00 0.00 2.92
413 414 7.169308 GGCATGCAATAAATGAAGAAAGAGATG 59.831 37.037 21.36 0.00 0.00 2.90
414 415 7.147794 TGGCATGCAATAAATGAAGAAAGAGAT 60.148 33.333 21.36 0.00 0.00 2.75
415 416 6.153170 TGGCATGCAATAAATGAAGAAAGAGA 59.847 34.615 21.36 0.00 0.00 3.10
416 417 6.255020 GTGGCATGCAATAAATGAAGAAAGAG 59.745 38.462 21.36 0.00 0.00 2.85
417 418 6.101332 GTGGCATGCAATAAATGAAGAAAGA 58.899 36.000 21.36 0.00 0.00 2.52
418 419 5.870433 TGTGGCATGCAATAAATGAAGAAAG 59.130 36.000 21.36 0.00 0.00 2.62
419 420 5.791666 TGTGGCATGCAATAAATGAAGAAA 58.208 33.333 21.36 0.00 0.00 2.52
420 421 5.402997 TGTGGCATGCAATAAATGAAGAA 57.597 34.783 21.36 0.00 0.00 2.52
421 422 5.127356 TGATGTGGCATGCAATAAATGAAGA 59.873 36.000 21.36 0.00 0.00 2.87
422 423 5.353111 TGATGTGGCATGCAATAAATGAAG 58.647 37.500 21.36 0.00 0.00 3.02
423 424 5.340439 TGATGTGGCATGCAATAAATGAA 57.660 34.783 21.36 0.00 0.00 2.57
424 425 5.303333 AGATGATGTGGCATGCAATAAATGA 59.697 36.000 21.36 0.22 0.00 2.57
425 426 5.538118 AGATGATGTGGCATGCAATAAATG 58.462 37.500 21.36 0.00 0.00 2.32
426 427 5.801531 AGATGATGTGGCATGCAATAAAT 57.198 34.783 21.36 5.04 0.00 1.40
427 428 6.904463 ATAGATGATGTGGCATGCAATAAA 57.096 33.333 21.36 0.00 0.00 1.40
428 429 6.904463 AATAGATGATGTGGCATGCAATAA 57.096 33.333 21.36 3.33 0.00 1.40
429 430 6.904463 AAATAGATGATGTGGCATGCAATA 57.096 33.333 21.36 7.09 0.00 1.90
430 431 5.801531 AAATAGATGATGTGGCATGCAAT 57.198 34.783 21.36 9.79 0.00 3.56
431 432 6.461370 GGTTAAATAGATGATGTGGCATGCAA 60.461 38.462 21.36 4.92 0.00 4.08
432 433 5.009911 GGTTAAATAGATGATGTGGCATGCA 59.990 40.000 21.36 2.54 0.00 3.96
433 434 5.242393 AGGTTAAATAGATGATGTGGCATGC 59.758 40.000 9.90 9.90 0.00 4.06
434 435 6.889301 AGGTTAAATAGATGATGTGGCATG 57.111 37.500 0.00 0.00 0.00 4.06
435 436 7.977818 TCTAGGTTAAATAGATGATGTGGCAT 58.022 34.615 0.00 0.00 0.00 4.40
436 437 7.373617 TCTAGGTTAAATAGATGATGTGGCA 57.626 36.000 0.00 0.00 0.00 4.92
453 454 9.422681 AGTAGTAACATCACACATATCTAGGTT 57.577 33.333 0.00 0.00 0.00 3.50
454 455 8.998277 AGTAGTAACATCACACATATCTAGGT 57.002 34.615 0.00 0.00 0.00 3.08
458 459 9.944376 ACAAAAGTAGTAACATCACACATATCT 57.056 29.630 0.00 0.00 0.00 1.98
462 463 9.555727 AGTAACAAAAGTAGTAACATCACACAT 57.444 29.630 0.00 0.00 0.00 3.21
463 464 8.951787 AGTAACAAAAGTAGTAACATCACACA 57.048 30.769 0.00 0.00 0.00 3.72
464 465 8.493547 GGAGTAACAAAAGTAGTAACATCACAC 58.506 37.037 0.00 0.00 0.00 3.82
465 466 7.658575 GGGAGTAACAAAAGTAGTAACATCACA 59.341 37.037 0.00 0.00 0.00 3.58
466 467 7.658575 TGGGAGTAACAAAAGTAGTAACATCAC 59.341 37.037 0.00 0.00 0.00 3.06
467 468 7.737869 TGGGAGTAACAAAAGTAGTAACATCA 58.262 34.615 0.00 0.00 0.00 3.07
468 469 8.788325 ATGGGAGTAACAAAAGTAGTAACATC 57.212 34.615 0.00 0.00 0.00 3.06
469 470 9.010029 CAATGGGAGTAACAAAAGTAGTAACAT 57.990 33.333 0.00 0.00 0.00 2.71
470 471 7.994334 ACAATGGGAGTAACAAAAGTAGTAACA 59.006 33.333 0.00 0.00 0.00 2.41
471 472 8.287503 CACAATGGGAGTAACAAAAGTAGTAAC 58.712 37.037 0.00 0.00 0.00 2.50
472 473 7.446013 CCACAATGGGAGTAACAAAAGTAGTAA 59.554 37.037 0.00 0.00 32.67 2.24
473 474 6.938030 CCACAATGGGAGTAACAAAAGTAGTA 59.062 38.462 0.00 0.00 32.67 1.82
474 475 5.768164 CCACAATGGGAGTAACAAAAGTAGT 59.232 40.000 0.00 0.00 32.67 2.73
475 476 6.254281 CCACAATGGGAGTAACAAAAGTAG 57.746 41.667 0.00 0.00 32.67 2.57
490 491 3.634397 ACATCAGACTACCCACAATGG 57.366 47.619 0.00 0.00 37.25 3.16
491 492 4.326826 ACAACATCAGACTACCCACAATG 58.673 43.478 0.00 0.00 0.00 2.82
492 493 4.640771 ACAACATCAGACTACCCACAAT 57.359 40.909 0.00 0.00 0.00 2.71
493 494 4.133820 CAACAACATCAGACTACCCACAA 58.866 43.478 0.00 0.00 0.00 3.33
494 495 3.135712 ACAACAACATCAGACTACCCACA 59.864 43.478 0.00 0.00 0.00 4.17
495 496 3.740115 ACAACAACATCAGACTACCCAC 58.260 45.455 0.00 0.00 0.00 4.61
496 497 4.431416 AACAACAACATCAGACTACCCA 57.569 40.909 0.00 0.00 0.00 4.51
497 498 5.767816 AAAACAACAACATCAGACTACCC 57.232 39.130 0.00 0.00 0.00 3.69
520 521 3.106054 TCCCCCGCTTTGTATACTACAA 58.894 45.455 4.17 0.00 46.13 2.41
521 522 2.749600 TCCCCCGCTTTGTATACTACA 58.250 47.619 4.17 0.00 36.79 2.74
522 523 3.825143 TTCCCCCGCTTTGTATACTAC 57.175 47.619 4.17 0.00 0.00 2.73
523 524 4.840716 TTTTCCCCCGCTTTGTATACTA 57.159 40.909 4.17 0.00 0.00 1.82
524 525 3.724732 TTTTCCCCCGCTTTGTATACT 57.275 42.857 4.17 0.00 0.00 2.12
525 526 3.317149 GGATTTTCCCCCGCTTTGTATAC 59.683 47.826 0.00 0.00 0.00 1.47
526 527 3.203487 AGGATTTTCCCCCGCTTTGTATA 59.797 43.478 0.00 0.00 37.19 1.47
527 528 2.024369 AGGATTTTCCCCCGCTTTGTAT 60.024 45.455 0.00 0.00 37.19 2.29
528 529 1.356398 AGGATTTTCCCCCGCTTTGTA 59.644 47.619 0.00 0.00 37.19 2.41
529 530 0.114364 AGGATTTTCCCCCGCTTTGT 59.886 50.000 0.00 0.00 37.19 2.83
530 531 2.137810 TAGGATTTTCCCCCGCTTTG 57.862 50.000 0.00 0.00 37.19 2.77
531 532 2.911552 TTAGGATTTTCCCCCGCTTT 57.088 45.000 0.00 0.00 37.19 3.51
532 533 2.911552 TTTAGGATTTTCCCCCGCTT 57.088 45.000 0.00 0.00 37.19 4.68
533 534 2.911552 TTTTAGGATTTTCCCCCGCT 57.088 45.000 0.00 0.00 37.19 5.52
534 535 3.431626 CCATTTTTAGGATTTTCCCCCGC 60.432 47.826 0.00 0.00 37.19 6.13
535 536 4.027437 TCCATTTTTAGGATTTTCCCCCG 58.973 43.478 0.00 0.00 37.19 5.73
536 537 6.239600 GCTATCCATTTTTAGGATTTTCCCCC 60.240 42.308 0.00 0.00 43.21 5.40
537 538 6.239600 GGCTATCCATTTTTAGGATTTTCCCC 60.240 42.308 0.00 0.00 43.21 4.81
538 539 6.326323 TGGCTATCCATTTTTAGGATTTTCCC 59.674 38.462 0.00 0.00 43.21 3.97
539 540 7.360113 TGGCTATCCATTTTTAGGATTTTCC 57.640 36.000 0.00 1.19 43.21 3.13
540 541 7.710907 GGTTGGCTATCCATTTTTAGGATTTTC 59.289 37.037 0.00 0.00 43.21 2.29
541 542 7.564793 GGTTGGCTATCCATTTTTAGGATTTT 58.435 34.615 0.00 0.00 43.21 1.82
542 543 6.183360 CGGTTGGCTATCCATTTTTAGGATTT 60.183 38.462 0.00 0.00 43.21 2.17
543 544 5.301805 CGGTTGGCTATCCATTTTTAGGATT 59.698 40.000 0.00 0.00 43.21 3.01
545 546 4.080243 TCGGTTGGCTATCCATTTTTAGGA 60.080 41.667 0.00 0.00 43.05 2.94
546 547 4.204012 TCGGTTGGCTATCCATTTTTAGG 58.796 43.478 0.00 0.00 43.05 2.69
547 548 5.449999 GGTTCGGTTGGCTATCCATTTTTAG 60.450 44.000 0.00 0.00 43.05 1.85
548 549 4.399934 GGTTCGGTTGGCTATCCATTTTTA 59.600 41.667 0.00 0.00 43.05 1.52
549 550 3.194755 GGTTCGGTTGGCTATCCATTTTT 59.805 43.478 0.00 0.00 43.05 1.94
550 551 2.758423 GGTTCGGTTGGCTATCCATTTT 59.242 45.455 0.00 0.00 43.05 1.82
551 552 2.291282 TGGTTCGGTTGGCTATCCATTT 60.291 45.455 0.00 0.00 43.05 2.32
552 553 1.283613 TGGTTCGGTTGGCTATCCATT 59.716 47.619 0.00 0.00 43.05 3.16
553 554 0.916086 TGGTTCGGTTGGCTATCCAT 59.084 50.000 0.00 0.00 43.05 3.41
554 555 0.916086 ATGGTTCGGTTGGCTATCCA 59.084 50.000 0.00 0.00 41.55 3.41
555 556 2.052782 AATGGTTCGGTTGGCTATCC 57.947 50.000 0.00 0.00 0.00 2.59
572 573 3.713826 AGACGGGGTGTATGTTCAAAT 57.286 42.857 0.00 0.00 0.00 2.32
645 651 1.289800 GAAGGTGACGAGGCGGTTTC 61.290 60.000 0.00 0.00 0.00 2.78
890 899 2.020694 GCTGCTGCTCTCTCTCTCTCT 61.021 57.143 8.53 0.00 36.03 3.10
891 900 0.383231 GCTGCTGCTCTCTCTCTCTC 59.617 60.000 8.53 0.00 36.03 3.20
892 901 0.323633 TGCTGCTGCTCTCTCTCTCT 60.324 55.000 17.00 0.00 40.48 3.10
893 902 0.101759 CTGCTGCTGCTCTCTCTCTC 59.898 60.000 17.00 0.00 40.48 3.20
894 903 1.952102 GCTGCTGCTGCTCTCTCTCT 61.952 60.000 22.10 0.00 40.48 3.10
895 904 1.519898 GCTGCTGCTGCTCTCTCTC 60.520 63.158 22.10 0.00 40.48 3.20
896 905 2.580276 GCTGCTGCTGCTCTCTCT 59.420 61.111 22.10 0.00 40.48 3.10
897 906 1.674764 TAGGCTGCTGCTGCTCTCTC 61.675 60.000 26.79 12.74 40.48 3.20
898 907 1.678598 CTAGGCTGCTGCTGCTCTCT 61.679 60.000 26.79 18.88 40.48 3.10
899 908 1.227321 CTAGGCTGCTGCTGCTCTC 60.227 63.158 26.79 13.39 40.48 3.20
900 909 2.733669 CCTAGGCTGCTGCTGCTCT 61.734 63.158 26.79 22.91 40.48 4.09
901 910 2.203042 CCTAGGCTGCTGCTGCTC 60.203 66.667 26.79 18.15 40.48 4.26
902 911 3.795041 CCCTAGGCTGCTGCTGCT 61.795 66.667 26.79 16.79 40.48 4.24
1155 1164 4.740922 CCATAGCTGGTGTTGGCA 57.259 55.556 0.00 0.00 37.79 4.92
1205 1214 1.513160 GACTCACAGAGCTCGTCGC 60.513 63.158 8.37 0.00 39.57 5.19
1229 1238 4.567971 AGATGGAAGAATGATGAGATCGC 58.432 43.478 0.00 0.00 0.00 4.58
1250 1261 2.711542 GTTGGTGACATGGTAAGGGAG 58.288 52.381 0.00 0.00 42.32 4.30
1331 1362 8.066612 ACTTGAAGTCTGGAATCAAAAGAAAA 57.933 30.769 0.00 0.00 33.08 2.29
1332 1363 7.645058 ACTTGAAGTCTGGAATCAAAAGAAA 57.355 32.000 0.00 0.00 33.08 2.52
1826 1857 8.035165 ACTAGCATATCACGAATGACTAGTAG 57.965 38.462 0.00 0.00 39.60 2.57
1955 1986 4.993584 CGCAGTAGCATAAGATTCAAGGAT 59.006 41.667 0.00 0.00 42.27 3.24
1974 2005 1.481240 CACGGATCACAGTATCGCAG 58.519 55.000 0.00 0.00 0.00 5.18
1998 2030 5.768164 ACCATTGATGTAAACCTCGAAAAGT 59.232 36.000 0.00 0.00 0.00 2.66
1999 2031 6.254281 ACCATTGATGTAAACCTCGAAAAG 57.746 37.500 0.00 0.00 0.00 2.27
2003 2035 9.268268 GATATTAACCATTGATGTAAACCTCGA 57.732 33.333 0.00 0.00 0.00 4.04
2004 2036 9.273016 AGATATTAACCATTGATGTAAACCTCG 57.727 33.333 0.00 0.00 0.00 4.63
2006 2038 9.273016 CGAGATATTAACCATTGATGTAAACCT 57.727 33.333 0.00 0.00 0.00 3.50
2007 2039 9.052759 ACGAGATATTAACCATTGATGTAAACC 57.947 33.333 0.00 0.00 0.00 3.27
2023 2055 7.066163 TCACCGAAGAACTTGTACGAGATATTA 59.934 37.037 17.37 0.00 0.00 0.98
2024 2056 6.034591 CACCGAAGAACTTGTACGAGATATT 58.965 40.000 17.37 8.52 0.00 1.28
2072 2106 9.773328 CAATCACGACAAATGTAAACTCATATT 57.227 29.630 0.00 0.00 0.00 1.28
2076 2110 6.612247 ACAATCACGACAAATGTAAACTCA 57.388 33.333 0.00 0.00 0.00 3.41
2099 2133 5.384063 TTCTCAACTTGTGCAGTCAAAAA 57.616 34.783 0.00 0.00 32.94 1.94
2116 2150 4.212004 CGTTCTCACTTTGCATCTTTCTCA 59.788 41.667 0.00 0.00 0.00 3.27
2235 2285 7.284716 ACACTCTTGACCGATCAGTGTATATAA 59.715 37.037 10.15 0.00 39.00 0.98
2409 2459 5.373812 ACATCTATTCCTTACAGGTTGGG 57.626 43.478 0.00 0.00 36.53 4.12
2445 2495 2.212869 TGTAAATACTACGCCGCCTG 57.787 50.000 0.00 0.00 0.00 4.85
2452 2502 6.136071 GCATTCAGCCATTGTAAATACTACG 58.864 40.000 0.00 0.00 37.23 3.51
2691 2741 4.351111 TGCCTTTCTTTTCTCTAAGTCCCT 59.649 41.667 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.