Multiple sequence alignment - TraesCS3B01G215700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G215700 | chr3B | 100.000 | 5248 | 0 | 0 | 1 | 5248 | 256778829 | 256784076 | 0.000000e+00 | 9692.0 |
1 | TraesCS3B01G215700 | chr3B | 84.762 | 420 | 53 | 8 | 1 | 413 | 377435231 | 377435646 | 1.360000e-110 | 411.0 |
2 | TraesCS3B01G215700 | chr3B | 97.753 | 178 | 1 | 2 | 2471 | 2645 | 783212696 | 783212873 | 2.370000e-78 | 303.0 |
3 | TraesCS3B01G215700 | chr3B | 86.170 | 94 | 10 | 3 | 1863 | 1956 | 684636622 | 684636712 | 1.200000e-16 | 99.0 |
4 | TraesCS3B01G215700 | chr3D | 94.204 | 2657 | 78 | 19 | 2644 | 5248 | 178530388 | 178533020 | 0.000000e+00 | 3984.0 |
5 | TraesCS3B01G215700 | chr3D | 95.670 | 993 | 23 | 5 | 880 | 1870 | 178528899 | 178529873 | 0.000000e+00 | 1578.0 |
6 | TraesCS3B01G215700 | chr3D | 95.866 | 508 | 17 | 4 | 200 | 704 | 178527930 | 178528436 | 0.000000e+00 | 819.0 |
7 | TraesCS3B01G215700 | chr3D | 93.385 | 514 | 15 | 6 | 1977 | 2483 | 178529888 | 178530389 | 0.000000e+00 | 743.0 |
8 | TraesCS3B01G215700 | chr3D | 91.045 | 469 | 16 | 5 | 361 | 815 | 178528444 | 178528900 | 1.250000e-170 | 610.0 |
9 | TraesCS3B01G215700 | chr3D | 97.403 | 77 | 2 | 0 | 1617 | 1693 | 274515932 | 274515856 | 1.190000e-26 | 132.0 |
10 | TraesCS3B01G215700 | chr3D | 97.333 | 75 | 2 | 0 | 1616 | 1690 | 46481658 | 46481732 | 1.530000e-25 | 128.0 |
11 | TraesCS3B01G215700 | chr3A | 92.766 | 2654 | 95 | 33 | 2644 | 5248 | 219795394 | 219797999 | 0.000000e+00 | 3747.0 |
12 | TraesCS3B01G215700 | chr3A | 95.178 | 1659 | 49 | 12 | 836 | 2483 | 219793757 | 219795395 | 0.000000e+00 | 2591.0 |
13 | TraesCS3B01G215700 | chr3A | 87.586 | 145 | 16 | 2 | 453 | 595 | 684327063 | 684326919 | 3.250000e-37 | 167.0 |
14 | TraesCS3B01G215700 | chr5D | 83.914 | 603 | 65 | 12 | 1 | 596 | 110869521 | 110870098 | 9.940000e-152 | 547.0 |
15 | TraesCS3B01G215700 | chr5D | 88.889 | 90 | 5 | 3 | 1869 | 1956 | 535136260 | 535136174 | 7.190000e-19 | 106.0 |
16 | TraesCS3B01G215700 | chr7D | 82.638 | 599 | 81 | 14 | 3 | 595 | 428037659 | 428038240 | 4.690000e-140 | 508.0 |
17 | TraesCS3B01G215700 | chr7D | 86.417 | 427 | 48 | 7 | 1 | 420 | 630509098 | 630508675 | 4.790000e-125 | 459.0 |
18 | TraesCS3B01G215700 | chr7D | 85.480 | 427 | 48 | 10 | 1 | 420 | 630300570 | 630300151 | 2.900000e-117 | 433.0 |
19 | TraesCS3B01G215700 | chr7D | 98.649 | 74 | 1 | 0 | 1617 | 1690 | 540843393 | 540843466 | 1.190000e-26 | 132.0 |
20 | TraesCS3B01G215700 | chr4D | 81.664 | 589 | 85 | 14 | 1 | 581 | 463332818 | 463333391 | 7.960000e-128 | 468.0 |
21 | TraesCS3B01G215700 | chr4D | 86.310 | 168 | 23 | 0 | 453 | 620 | 113574258 | 113574091 | 3.230000e-42 | 183.0 |
22 | TraesCS3B01G215700 | chr1D | 85.439 | 467 | 37 | 11 | 4808 | 5248 | 452345388 | 452344927 | 1.720000e-124 | 457.0 |
23 | TraesCS3B01G215700 | chr1D | 82.836 | 268 | 34 | 7 | 4993 | 5248 | 433519526 | 433519259 | 4.090000e-56 | 230.0 |
24 | TraesCS3B01G215700 | chr1D | 98.649 | 74 | 1 | 0 | 1617 | 1690 | 218903633 | 218903706 | 1.190000e-26 | 132.0 |
25 | TraesCS3B01G215700 | chr5B | 82.226 | 557 | 68 | 16 | 1 | 549 | 368491962 | 368491429 | 8.010000e-123 | 451.0 |
26 | TraesCS3B01G215700 | chr5B | 97.222 | 180 | 2 | 3 | 2474 | 2652 | 283982431 | 283982254 | 8.540000e-78 | 302.0 |
27 | TraesCS3B01G215700 | chr5B | 95.628 | 183 | 8 | 0 | 2480 | 2662 | 467042935 | 467042753 | 1.430000e-75 | 294.0 |
28 | TraesCS3B01G215700 | chr6D | 81.593 | 565 | 82 | 12 | 24 | 581 | 11193731 | 11193182 | 1.040000e-121 | 448.0 |
29 | TraesCS3B01G215700 | chr6D | 88.679 | 159 | 16 | 2 | 453 | 610 | 131683680 | 131683523 | 5.360000e-45 | 193.0 |
30 | TraesCS3B01G215700 | chr1A | 82.885 | 520 | 66 | 15 | 21 | 538 | 243664665 | 243664167 | 3.730000e-121 | 446.0 |
31 | TraesCS3B01G215700 | chr1A | 84.698 | 464 | 44 | 12 | 4808 | 5248 | 547258254 | 547257795 | 6.240000e-119 | 438.0 |
32 | TraesCS3B01G215700 | chr1A | 82.609 | 276 | 34 | 9 | 4986 | 5248 | 532106040 | 532105766 | 1.140000e-56 | 231.0 |
33 | TraesCS3B01G215700 | chr5A | 84.672 | 411 | 54 | 8 | 2 | 406 | 1397780 | 1398187 | 8.190000e-108 | 401.0 |
34 | TraesCS3B01G215700 | chr5A | 84.783 | 92 | 11 | 1 | 1866 | 1957 | 688704962 | 688705050 | 7.240000e-14 | 89.8 |
35 | TraesCS3B01G215700 | chr1B | 83.156 | 469 | 49 | 10 | 4806 | 5248 | 622183946 | 622184410 | 8.190000e-108 | 401.0 |
36 | TraesCS3B01G215700 | chr1B | 99.412 | 170 | 1 | 0 | 2482 | 2651 | 442958085 | 442958254 | 5.100000e-80 | 309.0 |
37 | TraesCS3B01G215700 | chr1B | 97.222 | 180 | 4 | 1 | 2470 | 2648 | 447321960 | 447322139 | 2.370000e-78 | 303.0 |
38 | TraesCS3B01G215700 | chr1B | 82.734 | 278 | 30 | 12 | 4986 | 5248 | 585885088 | 585884814 | 1.140000e-56 | 231.0 |
39 | TraesCS3B01G215700 | chr1B | 84.946 | 93 | 11 | 2 | 1866 | 1958 | 92616627 | 92616716 | 2.010000e-14 | 91.6 |
40 | TraesCS3B01G215700 | chr2A | 99.408 | 169 | 1 | 0 | 2477 | 2645 | 113822290 | 113822458 | 1.840000e-79 | 307.0 |
41 | TraesCS3B01G215700 | chr2A | 98.837 | 172 | 2 | 0 | 2482 | 2653 | 705822003 | 705821832 | 1.840000e-79 | 307.0 |
42 | TraesCS3B01G215700 | chr2A | 85.276 | 163 | 20 | 4 | 454 | 613 | 180994366 | 180994205 | 1.170000e-36 | 165.0 |
43 | TraesCS3B01G215700 | chr7B | 98.824 | 170 | 2 | 0 | 2482 | 2651 | 688929384 | 688929553 | 2.370000e-78 | 303.0 |
44 | TraesCS3B01G215700 | chr7B | 82.184 | 174 | 29 | 2 | 423 | 595 | 468211544 | 468211372 | 1.180000e-31 | 148.0 |
45 | TraesCS3B01G215700 | chr7B | 95.294 | 85 | 2 | 1 | 1618 | 1700 | 445663436 | 445663352 | 3.300000e-27 | 134.0 |
46 | TraesCS3B01G215700 | chr7B | 95.588 | 68 | 3 | 0 | 1869 | 1936 | 428965845 | 428965912 | 5.560000e-20 | 110.0 |
47 | TraesCS3B01G215700 | chr7B | 88.889 | 90 | 7 | 2 | 1868 | 1957 | 684403222 | 684403308 | 2.000000e-19 | 108.0 |
48 | TraesCS3B01G215700 | chr7B | 87.500 | 88 | 8 | 3 | 1869 | 1956 | 44766164 | 44766248 | 1.200000e-16 | 99.0 |
49 | TraesCS3B01G215700 | chr6B | 96.648 | 179 | 6 | 0 | 2472 | 2650 | 160917044 | 160917222 | 1.100000e-76 | 298.0 |
50 | TraesCS3B01G215700 | chr6B | 98.649 | 74 | 1 | 0 | 1617 | 1690 | 20231027 | 20231100 | 1.190000e-26 | 132.0 |
51 | TraesCS3B01G215700 | chr7A | 84.746 | 177 | 23 | 3 | 440 | 612 | 724969166 | 724968990 | 1.940000e-39 | 174.0 |
52 | TraesCS3B01G215700 | chr4A | 97.468 | 79 | 1 | 1 | 1613 | 1690 | 302680115 | 302680193 | 3.300000e-27 | 134.0 |
53 | TraesCS3B01G215700 | chr2D | 88.421 | 95 | 8 | 3 | 1862 | 1956 | 301762332 | 301762423 | 1.540000e-20 | 111.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G215700 | chr3B | 256778829 | 256784076 | 5247 | False | 9692.0 | 9692 | 100.000 | 1 | 5248 | 1 | chr3B.!!$F1 | 5247 |
1 | TraesCS3B01G215700 | chr3D | 178527930 | 178533020 | 5090 | False | 1546.8 | 3984 | 94.034 | 200 | 5248 | 5 | chr3D.!!$F2 | 5048 |
2 | TraesCS3B01G215700 | chr3A | 219793757 | 219797999 | 4242 | False | 3169.0 | 3747 | 93.972 | 836 | 5248 | 2 | chr3A.!!$F1 | 4412 |
3 | TraesCS3B01G215700 | chr5D | 110869521 | 110870098 | 577 | False | 547.0 | 547 | 83.914 | 1 | 596 | 1 | chr5D.!!$F1 | 595 |
4 | TraesCS3B01G215700 | chr7D | 428037659 | 428038240 | 581 | False | 508.0 | 508 | 82.638 | 3 | 595 | 1 | chr7D.!!$F1 | 592 |
5 | TraesCS3B01G215700 | chr4D | 463332818 | 463333391 | 573 | False | 468.0 | 468 | 81.664 | 1 | 581 | 1 | chr4D.!!$F1 | 580 |
6 | TraesCS3B01G215700 | chr5B | 368491429 | 368491962 | 533 | True | 451.0 | 451 | 82.226 | 1 | 549 | 1 | chr5B.!!$R2 | 548 |
7 | TraesCS3B01G215700 | chr6D | 11193182 | 11193731 | 549 | True | 448.0 | 448 | 81.593 | 24 | 581 | 1 | chr6D.!!$R1 | 557 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
668 | 1037 | 0.459078 | TGTGTGCCATGTTGGTTGTG | 59.541 | 50.0 | 0.00 | 0.0 | 40.46 | 3.33 | F |
2544 | 2938 | 0.528924 | AAGTGACTACATACGGCGCA | 59.471 | 50.0 | 10.83 | 0.0 | 0.00 | 6.09 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2627 | 3021 | 0.410663 | TCTACTCCCTCCGTTCCCAA | 59.589 | 55.0 | 0.00 | 0.00 | 0.0 | 4.12 | R |
4505 | 4927 | 0.245539 | TTGACGTGGGCTAGTACTGC | 59.754 | 55.0 | 5.39 | 7.18 | 0.0 | 4.40 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
38 | 44 | 8.718102 | AAAACTCGTATATCATAACTGCTTGT | 57.282 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
54 | 60 | 3.181508 | TGCTTGTGTGATCATGCATAACG | 60.182 | 43.478 | 0.00 | 0.00 | 41.30 | 3.18 |
56 | 62 | 4.033932 | GCTTGTGTGATCATGCATAACGTA | 59.966 | 41.667 | 0.00 | 0.00 | 38.05 | 3.57 |
68 | 74 | 7.630026 | TCATGCATAACGTAATCATTGAGAAC | 58.370 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
71 | 77 | 6.752815 | TGCATAACGTAATCATTGAGAACGTA | 59.247 | 34.615 | 22.04 | 14.13 | 45.19 | 3.57 |
80 | 86 | 2.410785 | TTGAGAACGTACGTGGACAG | 57.589 | 50.000 | 23.57 | 0.00 | 0.00 | 3.51 |
114 | 120 | 3.571401 | CACCTTCTATCATTTGATGGGCC | 59.429 | 47.826 | 0.00 | 0.00 | 36.05 | 5.80 |
144 | 150 | 1.341482 | TGCCGATGAGAAGAGAGGAGT | 60.341 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
149 | 155 | 4.099266 | CCGATGAGAAGAGAGGAGTGAATT | 59.901 | 45.833 | 0.00 | 0.00 | 0.00 | 2.17 |
150 | 156 | 5.395103 | CCGATGAGAAGAGAGGAGTGAATTT | 60.395 | 44.000 | 0.00 | 0.00 | 0.00 | 1.82 |
152 | 158 | 5.157940 | TGAGAAGAGAGGAGTGAATTTGG | 57.842 | 43.478 | 0.00 | 0.00 | 0.00 | 3.28 |
161 | 167 | 4.331968 | AGGAGTGAATTTGGCGTTTCATA | 58.668 | 39.130 | 0.85 | 0.00 | 34.60 | 2.15 |
187 | 194 | 9.574516 | AAAGGTGTACAATGAAATTAGAGACTT | 57.425 | 29.630 | 0.00 | 0.00 | 32.46 | 3.01 |
193 | 200 | 9.088512 | GTACAATGAAATTAGAGACTTCGATGT | 57.911 | 33.333 | 3.22 | 3.22 | 32.46 | 3.06 |
230 | 237 | 6.644347 | TCAGAAGGATTTGATGAAGGAGTAC | 58.356 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
309 | 317 | 7.068955 | GTGCAATAACCTTTTTGTATTTGTGC | 58.931 | 34.615 | 0.00 | 0.00 | 0.00 | 4.57 |
665 | 1034 | 2.356665 | TAGTGTGTGCCATGTTGGTT | 57.643 | 45.000 | 0.00 | 0.00 | 40.46 | 3.67 |
668 | 1037 | 0.459078 | TGTGTGCCATGTTGGTTGTG | 59.541 | 50.000 | 0.00 | 0.00 | 40.46 | 3.33 |
698 | 1068 | 2.497675 | ACCTATGCACTAGCCGGATATG | 59.502 | 50.000 | 5.05 | 5.15 | 41.13 | 1.78 |
700 | 1070 | 3.055819 | CCTATGCACTAGCCGGATATGTT | 60.056 | 47.826 | 5.05 | 0.00 | 41.13 | 2.71 |
703 | 1073 | 3.616219 | TGCACTAGCCGGATATGTTTTT | 58.384 | 40.909 | 5.05 | 0.00 | 41.13 | 1.94 |
819 | 1201 | 6.301169 | AGTTATTTTTCGAGAGGATCAGGT | 57.699 | 37.500 | 0.00 | 0.00 | 37.82 | 4.00 |
820 | 1202 | 6.712276 | AGTTATTTTTCGAGAGGATCAGGTT | 58.288 | 36.000 | 0.00 | 0.00 | 37.82 | 3.50 |
821 | 1203 | 7.168905 | AGTTATTTTTCGAGAGGATCAGGTTT | 58.831 | 34.615 | 0.00 | 0.00 | 37.82 | 3.27 |
822 | 1204 | 7.665974 | AGTTATTTTTCGAGAGGATCAGGTTTT | 59.334 | 33.333 | 0.00 | 0.00 | 37.82 | 2.43 |
823 | 1205 | 6.901081 | ATTTTTCGAGAGGATCAGGTTTTT | 57.099 | 33.333 | 0.00 | 0.00 | 37.82 | 1.94 |
875 | 1257 | 8.515695 | TTTTAGACATACTCGAGAGGAATACA | 57.484 | 34.615 | 21.68 | 0.00 | 0.00 | 2.29 |
1214 | 1601 | 1.759459 | GCCAGATTCTACCTCCCCCG | 61.759 | 65.000 | 0.00 | 0.00 | 0.00 | 5.73 |
1233 | 1620 | 3.998672 | GGTTCGCGACCTGTCCCA | 61.999 | 66.667 | 9.15 | 0.00 | 45.55 | 4.37 |
1363 | 1750 | 2.751688 | GCCGGTGGGGACAGTAAA | 59.248 | 61.111 | 1.90 | 0.00 | 44.46 | 2.01 |
1525 | 1912 | 3.763360 | TGTGGATGTAAAAATGGAGCTGG | 59.237 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
1527 | 1914 | 4.016444 | TGGATGTAAAAATGGAGCTGGTC | 58.984 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
1636 | 2023 | 1.831736 | TGGGTTTCAGCTCTAGCCTAC | 59.168 | 52.381 | 0.00 | 0.00 | 43.38 | 3.18 |
1650 | 2037 | 1.497286 | AGCCTACCCCAACTTGTTTGA | 59.503 | 47.619 | 0.00 | 0.00 | 37.39 | 2.69 |
1690 | 2077 | 6.040247 | TGTTGTTGTTGTTGTTGTTGTTGTA | 58.960 | 32.000 | 0.00 | 0.00 | 0.00 | 2.41 |
1764 | 2151 | 8.102047 | TCTATAGGAAATTACTCCTCTCCTACG | 58.898 | 40.741 | 1.79 | 0.00 | 42.53 | 3.51 |
1765 | 2152 | 3.637694 | AGGAAATTACTCCTCTCCTACGC | 59.362 | 47.826 | 0.00 | 0.00 | 42.53 | 4.42 |
1806 | 2193 | 7.978099 | AAATTTTGATTAGATGCTTACCCCT | 57.022 | 32.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1807 | 2194 | 7.978099 | AATTTTGATTAGATGCTTACCCCTT | 57.022 | 32.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1808 | 2195 | 7.978099 | ATTTTGATTAGATGCTTACCCCTTT | 57.022 | 32.000 | 0.00 | 0.00 | 0.00 | 3.11 |
1809 | 2196 | 7.404671 | TTTTGATTAGATGCTTACCCCTTTC | 57.595 | 36.000 | 0.00 | 0.00 | 0.00 | 2.62 |
1810 | 2197 | 5.975988 | TGATTAGATGCTTACCCCTTTCT | 57.024 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
1811 | 2198 | 6.327386 | TGATTAGATGCTTACCCCTTTCTT | 57.673 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
1978 | 2365 | 4.711355 | AGCATGCTTTAGGCCAAAAGAATA | 59.289 | 37.500 | 16.30 | 0.00 | 38.50 | 1.75 |
2114 | 2503 | 1.821216 | TGGAGAAAAGGTTCATCCGC | 58.179 | 50.000 | 0.00 | 0.00 | 41.99 | 5.54 |
2225 | 2614 | 3.023119 | TGGGGTGCATGATGTATTCAAC | 58.977 | 45.455 | 0.00 | 0.00 | 38.03 | 3.18 |
2352 | 2741 | 5.838531 | TTGGTCACCGAAAAACATTTACT | 57.161 | 34.783 | 0.00 | 0.00 | 0.00 | 2.24 |
2353 | 2742 | 5.838531 | TGGTCACCGAAAAACATTTACTT | 57.161 | 34.783 | 0.00 | 0.00 | 0.00 | 2.24 |
2354 | 2743 | 6.939132 | TGGTCACCGAAAAACATTTACTTA | 57.061 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2355 | 2744 | 7.513371 | TGGTCACCGAAAAACATTTACTTAT | 57.487 | 32.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2356 | 2745 | 7.942990 | TGGTCACCGAAAAACATTTACTTATT | 58.057 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
2357 | 2746 | 9.064706 | TGGTCACCGAAAAACATTTACTTATTA | 57.935 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
2479 | 2873 | 1.462616 | AAGCAGCACCGCATTCATTA | 58.537 | 45.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2481 | 2875 | 2.026641 | AGCAGCACCGCATTCATTATT | 58.973 | 42.857 | 0.00 | 0.00 | 0.00 | 1.40 |
2482 | 2876 | 3.213506 | AGCAGCACCGCATTCATTATTA | 58.786 | 40.909 | 0.00 | 0.00 | 0.00 | 0.98 |
2483 | 2877 | 3.003689 | AGCAGCACCGCATTCATTATTAC | 59.996 | 43.478 | 0.00 | 0.00 | 0.00 | 1.89 |
2484 | 2878 | 3.003689 | GCAGCACCGCATTCATTATTACT | 59.996 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
2485 | 2879 | 4.776743 | CAGCACCGCATTCATTATTACTC | 58.223 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
2486 | 2880 | 3.815401 | AGCACCGCATTCATTATTACTCC | 59.185 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
2487 | 2881 | 3.058224 | GCACCGCATTCATTATTACTCCC | 60.058 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
2488 | 2882 | 4.389374 | CACCGCATTCATTATTACTCCCT | 58.611 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
2489 | 2883 | 4.452455 | CACCGCATTCATTATTACTCCCTC | 59.548 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2490 | 2884 | 4.003648 | CCGCATTCATTATTACTCCCTCC | 58.996 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
2491 | 2885 | 3.679980 | CGCATTCATTATTACTCCCTCCG | 59.320 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
2492 | 2886 | 4.642429 | GCATTCATTATTACTCCCTCCGT | 58.358 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
2493 | 2887 | 5.063880 | GCATTCATTATTACTCCCTCCGTT | 58.936 | 41.667 | 0.00 | 0.00 | 0.00 | 4.44 |
2494 | 2888 | 5.179555 | GCATTCATTATTACTCCCTCCGTTC | 59.820 | 44.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2495 | 2889 | 4.950205 | TCATTATTACTCCCTCCGTTCC | 57.050 | 45.455 | 0.00 | 0.00 | 0.00 | 3.62 |
2496 | 2890 | 4.553678 | TCATTATTACTCCCTCCGTTCCT | 58.446 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
2497 | 2891 | 5.708544 | TCATTATTACTCCCTCCGTTCCTA | 58.291 | 41.667 | 0.00 | 0.00 | 0.00 | 2.94 |
2498 | 2892 | 6.138263 | TCATTATTACTCCCTCCGTTCCTAA | 58.862 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2499 | 2893 | 6.612456 | TCATTATTACTCCCTCCGTTCCTAAA | 59.388 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
2500 | 2894 | 7.291651 | TCATTATTACTCCCTCCGTTCCTAAAT | 59.708 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
2501 | 2895 | 8.591072 | CATTATTACTCCCTCCGTTCCTAAATA | 58.409 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
2502 | 2896 | 5.859205 | TTACTCCCTCCGTTCCTAAATAC | 57.141 | 43.478 | 0.00 | 0.00 | 0.00 | 1.89 |
2503 | 2897 | 3.991683 | ACTCCCTCCGTTCCTAAATACT | 58.008 | 45.455 | 0.00 | 0.00 | 0.00 | 2.12 |
2504 | 2898 | 4.359996 | ACTCCCTCCGTTCCTAAATACTT | 58.640 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
2505 | 2899 | 4.161754 | ACTCCCTCCGTTCCTAAATACTTG | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
2506 | 2900 | 4.098894 | TCCCTCCGTTCCTAAATACTTGT | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
2507 | 2901 | 4.161001 | TCCCTCCGTTCCTAAATACTTGTC | 59.839 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
2508 | 2902 | 4.161754 | CCCTCCGTTCCTAAATACTTGTCT | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
2509 | 2903 | 5.338137 | CCCTCCGTTCCTAAATACTTGTCTT | 60.338 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2510 | 2904 | 6.171213 | CCTCCGTTCCTAAATACTTGTCTTT | 58.829 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2511 | 2905 | 6.313164 | CCTCCGTTCCTAAATACTTGTCTTTC | 59.687 | 42.308 | 0.00 | 0.00 | 0.00 | 2.62 |
2512 | 2906 | 7.001099 | TCCGTTCCTAAATACTTGTCTTTCT | 57.999 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2513 | 2907 | 8.125978 | TCCGTTCCTAAATACTTGTCTTTCTA | 57.874 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
2514 | 2908 | 8.248945 | TCCGTTCCTAAATACTTGTCTTTCTAG | 58.751 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
2515 | 2909 | 8.248945 | CCGTTCCTAAATACTTGTCTTTCTAGA | 58.751 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
2516 | 2910 | 9.291664 | CGTTCCTAAATACTTGTCTTTCTAGAG | 57.708 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
2526 | 2920 | 8.964476 | ACTTGTCTTTCTAGAGATTTCAACAA | 57.036 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
2527 | 2921 | 9.050601 | ACTTGTCTTTCTAGAGATTTCAACAAG | 57.949 | 33.333 | 18.42 | 18.42 | 32.73 | 3.16 |
2528 | 2922 | 8.964476 | TTGTCTTTCTAGAGATTTCAACAAGT | 57.036 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
2529 | 2923 | 8.370493 | TGTCTTTCTAGAGATTTCAACAAGTG | 57.630 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
2530 | 2924 | 8.204160 | TGTCTTTCTAGAGATTTCAACAAGTGA | 58.796 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
2531 | 2925 | 8.491950 | GTCTTTCTAGAGATTTCAACAAGTGAC | 58.508 | 37.037 | 0.00 | 0.00 | 35.39 | 3.67 |
2532 | 2926 | 8.424918 | TCTTTCTAGAGATTTCAACAAGTGACT | 58.575 | 33.333 | 0.00 | 0.00 | 35.39 | 3.41 |
2533 | 2927 | 9.698309 | CTTTCTAGAGATTTCAACAAGTGACTA | 57.302 | 33.333 | 0.00 | 0.00 | 35.39 | 2.59 |
2534 | 2928 | 9.477484 | TTTCTAGAGATTTCAACAAGTGACTAC | 57.523 | 33.333 | 0.00 | 0.00 | 35.39 | 2.73 |
2535 | 2929 | 8.178313 | TCTAGAGATTTCAACAAGTGACTACA | 57.822 | 34.615 | 0.00 | 0.00 | 35.39 | 2.74 |
2536 | 2930 | 8.807118 | TCTAGAGATTTCAACAAGTGACTACAT | 58.193 | 33.333 | 0.00 | 0.00 | 35.39 | 2.29 |
2538 | 2932 | 8.764524 | AGAGATTTCAACAAGTGACTACATAC | 57.235 | 34.615 | 0.00 | 0.00 | 35.39 | 2.39 |
2539 | 2933 | 7.542477 | AGAGATTTCAACAAGTGACTACATACG | 59.458 | 37.037 | 0.00 | 0.00 | 35.39 | 3.06 |
2540 | 2934 | 6.590292 | AGATTTCAACAAGTGACTACATACGG | 59.410 | 38.462 | 0.00 | 0.00 | 35.39 | 4.02 |
2541 | 2935 | 3.581755 | TCAACAAGTGACTACATACGGC | 58.418 | 45.455 | 0.00 | 0.00 | 0.00 | 5.68 |
2542 | 2936 | 2.273370 | ACAAGTGACTACATACGGCG | 57.727 | 50.000 | 4.80 | 4.80 | 0.00 | 6.46 |
2543 | 2937 | 0.921347 | CAAGTGACTACATACGGCGC | 59.079 | 55.000 | 6.90 | 0.00 | 0.00 | 6.53 |
2544 | 2938 | 0.528924 | AAGTGACTACATACGGCGCA | 59.471 | 50.000 | 10.83 | 0.00 | 0.00 | 6.09 |
2545 | 2939 | 0.528924 | AGTGACTACATACGGCGCAA | 59.471 | 50.000 | 10.83 | 0.00 | 0.00 | 4.85 |
2546 | 2940 | 1.067425 | AGTGACTACATACGGCGCAAA | 60.067 | 47.619 | 10.83 | 0.00 | 0.00 | 3.68 |
2547 | 2941 | 1.727880 | GTGACTACATACGGCGCAAAA | 59.272 | 47.619 | 10.83 | 0.00 | 0.00 | 2.44 |
2548 | 2942 | 2.350498 | GTGACTACATACGGCGCAAAAT | 59.650 | 45.455 | 10.83 | 0.00 | 0.00 | 1.82 |
2549 | 2943 | 2.350192 | TGACTACATACGGCGCAAAATG | 59.650 | 45.455 | 10.83 | 11.57 | 0.00 | 2.32 |
2550 | 2944 | 2.605818 | GACTACATACGGCGCAAAATGA | 59.394 | 45.455 | 10.83 | 0.00 | 0.00 | 2.57 |
2551 | 2945 | 2.607635 | ACTACATACGGCGCAAAATGAG | 59.392 | 45.455 | 10.83 | 10.39 | 0.00 | 2.90 |
2552 | 2946 | 1.448985 | ACATACGGCGCAAAATGAGT | 58.551 | 45.000 | 10.83 | 0.00 | 0.00 | 3.41 |
2553 | 2947 | 1.130373 | ACATACGGCGCAAAATGAGTG | 59.870 | 47.619 | 10.83 | 0.00 | 0.00 | 3.51 |
2554 | 2948 | 1.396648 | CATACGGCGCAAAATGAGTGA | 59.603 | 47.619 | 10.83 | 0.00 | 0.00 | 3.41 |
2555 | 2949 | 1.514003 | TACGGCGCAAAATGAGTGAA | 58.486 | 45.000 | 10.83 | 0.00 | 0.00 | 3.18 |
2556 | 2950 | 0.881118 | ACGGCGCAAAATGAGTGAAT | 59.119 | 45.000 | 10.83 | 0.00 | 0.00 | 2.57 |
2557 | 2951 | 1.135689 | ACGGCGCAAAATGAGTGAATC | 60.136 | 47.619 | 10.83 | 0.00 | 0.00 | 2.52 |
2558 | 2952 | 1.131126 | CGGCGCAAAATGAGTGAATCT | 59.869 | 47.619 | 10.83 | 0.00 | 0.00 | 2.40 |
2559 | 2953 | 2.351418 | CGGCGCAAAATGAGTGAATCTA | 59.649 | 45.455 | 10.83 | 0.00 | 0.00 | 1.98 |
2560 | 2954 | 3.685058 | GGCGCAAAATGAGTGAATCTAC | 58.315 | 45.455 | 10.83 | 0.00 | 0.00 | 2.59 |
2561 | 2955 | 3.126858 | GGCGCAAAATGAGTGAATCTACA | 59.873 | 43.478 | 10.83 | 0.00 | 0.00 | 2.74 |
2562 | 2956 | 4.091424 | GCGCAAAATGAGTGAATCTACAC | 58.909 | 43.478 | 0.30 | 0.00 | 40.60 | 2.90 |
2600 | 2994 | 4.944048 | CATACATCCGTATGTTGAGTCCA | 58.056 | 43.478 | 0.00 | 0.00 | 46.70 | 4.02 |
2601 | 2995 | 5.541845 | CATACATCCGTATGTTGAGTCCAT | 58.458 | 41.667 | 0.00 | 0.00 | 46.70 | 3.41 |
2602 | 2996 | 4.487714 | ACATCCGTATGTTGAGTCCATT | 57.512 | 40.909 | 0.00 | 0.00 | 44.07 | 3.16 |
2603 | 2997 | 4.843728 | ACATCCGTATGTTGAGTCCATTT | 58.156 | 39.130 | 0.00 | 0.00 | 44.07 | 2.32 |
2604 | 2998 | 5.984725 | ACATCCGTATGTTGAGTCCATTTA | 58.015 | 37.500 | 0.00 | 0.00 | 44.07 | 1.40 |
2605 | 2999 | 6.411376 | ACATCCGTATGTTGAGTCCATTTAA | 58.589 | 36.000 | 0.00 | 0.00 | 44.07 | 1.52 |
2606 | 3000 | 6.882140 | ACATCCGTATGTTGAGTCCATTTAAA | 59.118 | 34.615 | 0.00 | 0.00 | 44.07 | 1.52 |
2607 | 3001 | 7.392113 | ACATCCGTATGTTGAGTCCATTTAAAA | 59.608 | 33.333 | 0.00 | 0.00 | 44.07 | 1.52 |
2608 | 3002 | 7.931578 | TCCGTATGTTGAGTCCATTTAAAAT | 57.068 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2609 | 3003 | 7.757526 | TCCGTATGTTGAGTCCATTTAAAATG | 58.242 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
2610 | 3004 | 6.472163 | CCGTATGTTGAGTCCATTTAAAATGC | 59.528 | 38.462 | 0.00 | 0.00 | 0.00 | 3.56 |
2611 | 3005 | 6.472163 | CGTATGTTGAGTCCATTTAAAATGCC | 59.528 | 38.462 | 0.00 | 0.00 | 0.00 | 4.40 |
2612 | 3006 | 6.610075 | ATGTTGAGTCCATTTAAAATGCCT | 57.390 | 33.333 | 0.00 | 0.00 | 0.00 | 4.75 |
2613 | 3007 | 7.716799 | ATGTTGAGTCCATTTAAAATGCCTA | 57.283 | 32.000 | 0.00 | 0.00 | 0.00 | 3.93 |
2614 | 3008 | 7.156876 | TGTTGAGTCCATTTAAAATGCCTAG | 57.843 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2615 | 3009 | 6.945435 | TGTTGAGTCCATTTAAAATGCCTAGA | 59.055 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
2616 | 3010 | 7.450014 | TGTTGAGTCCATTTAAAATGCCTAGAA | 59.550 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
2617 | 3011 | 8.303876 | GTTGAGTCCATTTAAAATGCCTAGAAA | 58.696 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2618 | 3012 | 8.055279 | TGAGTCCATTTAAAATGCCTAGAAAG | 57.945 | 34.615 | 0.00 | 0.00 | 0.00 | 2.62 |
2619 | 3013 | 7.888021 | TGAGTCCATTTAAAATGCCTAGAAAGA | 59.112 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2620 | 3014 | 8.056407 | AGTCCATTTAAAATGCCTAGAAAGAC | 57.944 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
2621 | 3015 | 7.669722 | AGTCCATTTAAAATGCCTAGAAAGACA | 59.330 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
2622 | 3016 | 8.303876 | GTCCATTTAAAATGCCTAGAAAGACAA | 58.696 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2623 | 3017 | 8.522830 | TCCATTTAAAATGCCTAGAAAGACAAG | 58.477 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
2624 | 3018 | 8.306761 | CCATTTAAAATGCCTAGAAAGACAAGT | 58.693 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
2630 | 3024 | 7.396540 | AATGCCTAGAAAGACAAGTATTTGG | 57.603 | 36.000 | 2.81 | 0.00 | 38.66 | 3.28 |
2631 | 3025 | 5.253330 | TGCCTAGAAAGACAAGTATTTGGG | 58.747 | 41.667 | 2.81 | 0.00 | 38.66 | 4.12 |
2632 | 3026 | 5.013704 | TGCCTAGAAAGACAAGTATTTGGGA | 59.986 | 40.000 | 2.81 | 0.00 | 38.66 | 4.37 |
2633 | 3027 | 5.944007 | GCCTAGAAAGACAAGTATTTGGGAA | 59.056 | 40.000 | 2.81 | 0.00 | 38.66 | 3.97 |
2634 | 3028 | 6.127980 | GCCTAGAAAGACAAGTATTTGGGAAC | 60.128 | 42.308 | 2.81 | 0.00 | 38.66 | 3.62 |
2635 | 3029 | 5.941948 | AGAAAGACAAGTATTTGGGAACG | 57.058 | 39.130 | 2.81 | 0.00 | 38.66 | 3.95 |
2636 | 3030 | 4.760204 | AGAAAGACAAGTATTTGGGAACGG | 59.240 | 41.667 | 2.81 | 0.00 | 38.66 | 4.44 |
2637 | 3031 | 4.360951 | AAGACAAGTATTTGGGAACGGA | 57.639 | 40.909 | 2.81 | 0.00 | 38.66 | 4.69 |
2638 | 3032 | 3.939066 | AGACAAGTATTTGGGAACGGAG | 58.061 | 45.455 | 2.81 | 0.00 | 38.66 | 4.63 |
2639 | 3033 | 3.007635 | GACAAGTATTTGGGAACGGAGG | 58.992 | 50.000 | 2.81 | 0.00 | 38.66 | 4.30 |
2640 | 3034 | 2.290705 | ACAAGTATTTGGGAACGGAGGG | 60.291 | 50.000 | 2.81 | 0.00 | 38.66 | 4.30 |
2641 | 3035 | 1.961133 | AGTATTTGGGAACGGAGGGA | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2642 | 3036 | 1.838077 | AGTATTTGGGAACGGAGGGAG | 59.162 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
2651 | 3045 | 2.566279 | GGAACGGAGGGAGTAGAAGTTT | 59.434 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2673 | 3067 | 2.700897 | ACCAGATATACCCTCAGTGTGC | 59.299 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2952 | 3346 | 9.720769 | TTTTCATTACTTTACTTAGTGGAGGAG | 57.279 | 33.333 | 0.00 | 0.00 | 0.00 | 3.69 |
3095 | 3496 | 5.048434 | TCGCTCAGTATACTGGATTCATCTG | 60.048 | 44.000 | 28.33 | 11.26 | 43.91 | 2.90 |
3112 | 3513 | 6.656632 | TCATCTGAACTGATGTCTATACCC | 57.343 | 41.667 | 16.81 | 0.00 | 43.03 | 3.69 |
3204 | 3605 | 3.269381 | TGCTTTCCCCTTGGTATTCTCAT | 59.731 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
3304 | 3705 | 4.261405 | CGTTTGTGGGCTTTTGAGTTATGA | 60.261 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
3347 | 3748 | 7.339721 | TGTTTAGTTATGGACCTTTGTTTGTGA | 59.660 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
3580 | 3981 | 5.804639 | TCTTCAGCTTAGCCTTGAAATGTA | 58.195 | 37.500 | 9.58 | 0.00 | 31.11 | 2.29 |
3644 | 4048 | 3.432378 | TCTCAGTCACCTAGGTTCCTTC | 58.568 | 50.000 | 13.15 | 1.15 | 0.00 | 3.46 |
3710 | 4114 | 4.689071 | AGCACATGCACATAATCCATTTG | 58.311 | 39.130 | 6.64 | 0.00 | 45.16 | 2.32 |
3809 | 4228 | 4.261801 | ACACCATGTGAACTAGTTATGGC | 58.738 | 43.478 | 25.90 | 9.67 | 41.50 | 4.40 |
4080 | 4499 | 7.392953 | TGTTCATGTACTTTTCATAGGAATGCA | 59.607 | 33.333 | 4.01 | 0.00 | 32.76 | 3.96 |
4191 | 4610 | 6.831976 | AGCTGGGATATTTCTAGTTAAGGTG | 58.168 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4214 | 4633 | 1.134580 | TGTTTGGGTGTTTGTGCCATG | 60.135 | 47.619 | 0.00 | 0.00 | 0.00 | 3.66 |
4440 | 4861 | 4.365514 | TGAATTGTCCTGTAAAGCTGGA | 57.634 | 40.909 | 0.00 | 0.00 | 42.01 | 3.86 |
4454 | 4875 | 5.505181 | AAAGCTGGAGGAGATAAAACAGA | 57.495 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
4455 | 4876 | 5.505181 | AAGCTGGAGGAGATAAAACAGAA | 57.495 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
4487 | 4908 | 2.485814 | GGACAAATCAGTCAGCCTTCAC | 59.514 | 50.000 | 0.00 | 0.00 | 40.29 | 3.18 |
4500 | 4922 | 2.431771 | TTCACGGCATCGGACACG | 60.432 | 61.111 | 0.00 | 0.00 | 41.39 | 4.49 |
4505 | 4927 | 2.106332 | GGCATCGGACACGGTAGG | 59.894 | 66.667 | 0.00 | 0.00 | 41.39 | 3.18 |
4508 | 4930 | 1.226974 | CATCGGACACGGTAGGCAG | 60.227 | 63.158 | 0.00 | 0.00 | 41.39 | 4.85 |
4511 | 4933 | 1.138247 | CGGACACGGTAGGCAGTAC | 59.862 | 63.158 | 0.00 | 0.00 | 36.18 | 2.73 |
4541 | 4979 | 6.537301 | CCACGTCAAAACCTTAGCAGATATAA | 59.463 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
4589 | 5027 | 3.375642 | GCTCAGCCAAAAGAACAGAAAC | 58.624 | 45.455 | 0.00 | 0.00 | 0.00 | 2.78 |
4600 | 5048 | 4.639135 | AGAACAGAAACAGGTGCTTTTC | 57.361 | 40.909 | 0.00 | 0.00 | 32.76 | 2.29 |
4717 | 5165 | 0.872388 | GTGTTTCATCCGACACACCC | 59.128 | 55.000 | 1.35 | 0.00 | 43.88 | 4.61 |
4877 | 5326 | 5.112686 | GGATCTGGATACGATAAGCCAATC | 58.887 | 45.833 | 0.00 | 0.00 | 42.51 | 2.67 |
4929 | 5378 | 1.796017 | TCCCGGTATCAGTTGGCATA | 58.204 | 50.000 | 0.00 | 0.00 | 0.00 | 3.14 |
5057 | 5524 | 2.340337 | GCTGCAACTTAATGCCCAAAG | 58.660 | 47.619 | 0.00 | 0.00 | 45.83 | 2.77 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
18 | 20 | 6.801575 | TCACACAAGCAGTTATGATATACGA | 58.198 | 36.000 | 0.00 | 0.00 | 0.00 | 3.43 |
29 | 35 | 2.232399 | TGCATGATCACACAAGCAGTT | 58.768 | 42.857 | 0.00 | 0.00 | 31.53 | 3.16 |
38 | 44 | 7.226325 | TCAATGATTACGTTATGCATGATCACA | 59.774 | 33.333 | 10.16 | 0.00 | 0.00 | 3.58 |
54 | 60 | 5.004156 | GTCCACGTACGTTCTCAATGATTAC | 59.996 | 44.000 | 20.23 | 1.83 | 0.00 | 1.89 |
56 | 62 | 3.924686 | GTCCACGTACGTTCTCAATGATT | 59.075 | 43.478 | 20.23 | 0.00 | 0.00 | 2.57 |
68 | 74 | 3.770263 | TCTAAATCCTGTCCACGTACG | 57.230 | 47.619 | 15.01 | 15.01 | 0.00 | 3.67 |
70 | 76 | 6.406177 | GGTGTAATCTAAATCCTGTCCACGTA | 60.406 | 42.308 | 0.00 | 0.00 | 0.00 | 3.57 |
71 | 77 | 5.416947 | GTGTAATCTAAATCCTGTCCACGT | 58.583 | 41.667 | 0.00 | 0.00 | 0.00 | 4.49 |
114 | 120 | 5.532557 | TCTTCTCATCGGCATAACACATAG | 58.467 | 41.667 | 0.00 | 0.00 | 0.00 | 2.23 |
144 | 150 | 5.221342 | ACACCTTTATGAAACGCCAAATTCA | 60.221 | 36.000 | 0.00 | 0.00 | 39.66 | 2.57 |
149 | 155 | 4.135306 | TGTACACCTTTATGAAACGCCAA | 58.865 | 39.130 | 0.00 | 0.00 | 0.00 | 4.52 |
150 | 156 | 3.741249 | TGTACACCTTTATGAAACGCCA | 58.259 | 40.909 | 0.00 | 0.00 | 0.00 | 5.69 |
152 | 158 | 5.933790 | TCATTGTACACCTTTATGAAACGC | 58.066 | 37.500 | 4.98 | 0.00 | 0.00 | 4.84 |
161 | 167 | 9.574516 | AAGTCTCTAATTTCATTGTACACCTTT | 57.425 | 29.630 | 0.00 | 0.00 | 0.00 | 3.11 |
187 | 194 | 1.992667 | GAAGTTGATCGTGCACATCGA | 59.007 | 47.619 | 18.64 | 14.87 | 41.45 | 3.59 |
193 | 200 | 2.037121 | TCCTTCTGAAGTTGATCGTGCA | 59.963 | 45.455 | 15.72 | 0.00 | 0.00 | 4.57 |
230 | 237 | 4.807304 | GCTATTTTGCCATGTCATTTCCAG | 59.193 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
309 | 317 | 5.716094 | TCAAATCCACAAGATCAAATGCAG | 58.284 | 37.500 | 0.00 | 0.00 | 32.47 | 4.41 |
607 | 975 | 3.572584 | CAAAGTCAAAGATGCCAAGAGC | 58.427 | 45.455 | 0.00 | 0.00 | 44.14 | 4.09 |
608 | 976 | 3.255149 | AGCAAAGTCAAAGATGCCAAGAG | 59.745 | 43.478 | 0.00 | 0.00 | 39.59 | 2.85 |
609 | 977 | 3.225104 | AGCAAAGTCAAAGATGCCAAGA | 58.775 | 40.909 | 0.00 | 0.00 | 39.59 | 3.02 |
610 | 978 | 3.655276 | AGCAAAGTCAAAGATGCCAAG | 57.345 | 42.857 | 0.00 | 0.00 | 39.59 | 3.61 |
665 | 1034 | 3.694043 | TGCATAGGTAGAAAGCACACA | 57.306 | 42.857 | 0.00 | 0.00 | 0.00 | 3.72 |
747 | 1129 | 1.676006 | ACTGAGTGTTGGCTTTTTCGG | 59.324 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
821 | 1203 | 8.564574 | ACGTATTCATCTCAAGTTTGCTAAAAA | 58.435 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
822 | 1204 | 8.094798 | ACGTATTCATCTCAAGTTTGCTAAAA | 57.905 | 30.769 | 0.00 | 0.00 | 0.00 | 1.52 |
823 | 1205 | 7.667043 | ACGTATTCATCTCAAGTTTGCTAAA | 57.333 | 32.000 | 0.00 | 0.00 | 0.00 | 1.85 |
824 | 1206 | 7.667043 | AACGTATTCATCTCAAGTTTGCTAA | 57.333 | 32.000 | 0.00 | 0.00 | 0.00 | 3.09 |
825 | 1207 | 7.667043 | AAACGTATTCATCTCAAGTTTGCTA | 57.333 | 32.000 | 0.00 | 0.00 | 0.00 | 3.49 |
826 | 1208 | 6.560253 | AAACGTATTCATCTCAAGTTTGCT | 57.440 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
827 | 1209 | 7.623268 | AAAAACGTATTCATCTCAAGTTTGC | 57.377 | 32.000 | 0.00 | 0.00 | 31.77 | 3.68 |
854 | 1236 | 6.065374 | ACATGTATTCCTCTCGAGTATGTCT | 58.935 | 40.000 | 13.13 | 0.00 | 0.00 | 3.41 |
855 | 1237 | 6.320494 | ACATGTATTCCTCTCGAGTATGTC | 57.680 | 41.667 | 13.13 | 0.00 | 0.00 | 3.06 |
856 | 1238 | 9.168451 | CTATACATGTATTCCTCTCGAGTATGT | 57.832 | 37.037 | 22.90 | 12.42 | 0.00 | 2.29 |
859 | 1241 | 7.395617 | AGCTATACATGTATTCCTCTCGAGTA | 58.604 | 38.462 | 22.90 | 0.44 | 0.00 | 2.59 |
875 | 1257 | 5.716703 | ACCAAAGAAAAGGCAAGCTATACAT | 59.283 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
918 | 1302 | 1.944024 | TGGGCTCGTACTGTTGTTTTG | 59.056 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
1233 | 1620 | 4.162040 | AGCTCTAAACCATAAGCAGCAT | 57.838 | 40.909 | 0.00 | 0.00 | 37.22 | 3.79 |
1363 | 1750 | 2.531942 | GGGTCCCAGTTCCCCAGT | 60.532 | 66.667 | 1.78 | 0.00 | 38.37 | 4.00 |
1594 | 1981 | 1.705186 | ACAAGTTGGGGCAGTCTGTAT | 59.295 | 47.619 | 7.96 | 0.00 | 0.00 | 2.29 |
1636 | 2023 | 4.278419 | CCTTTAGTCTCAAACAAGTTGGGG | 59.722 | 45.833 | 7.96 | 0.00 | 38.37 | 4.96 |
1650 | 2037 | 5.185056 | ACAACAACAACAAAGCCTTTAGTCT | 59.815 | 36.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1690 | 2077 | 5.934625 | CAGAAGGCAGTCTGTATTTTGTACT | 59.065 | 40.000 | 9.41 | 0.00 | 40.22 | 2.73 |
1811 | 2198 | 9.423061 | CCTCAACAAAAAGAAAGAAAGAAAGAA | 57.577 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
1946 | 2333 | 2.435805 | CCTAAAGCATGCTACTCCCTCA | 59.564 | 50.000 | 23.00 | 0.00 | 0.00 | 3.86 |
1978 | 2365 | 5.365619 | ACGGATGTAGTTTTCACAGAAGTT | 58.634 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
1998 | 2387 | 6.984474 | TCTTTGCTCTGTAAAATAGGATACGG | 59.016 | 38.462 | 0.00 | 0.00 | 46.39 | 4.02 |
2225 | 2614 | 2.470362 | CGAGCCAGCTCCAGCAATG | 61.470 | 63.158 | 13.83 | 0.00 | 45.16 | 2.82 |
2479 | 2873 | 6.141790 | AGTATTTAGGAACGGAGGGAGTAAT | 58.858 | 40.000 | 0.00 | 0.00 | 0.00 | 1.89 |
2481 | 2875 | 5.134725 | AGTATTTAGGAACGGAGGGAGTA | 57.865 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
2482 | 2876 | 3.991683 | AGTATTTAGGAACGGAGGGAGT | 58.008 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
2483 | 2877 | 4.161754 | ACAAGTATTTAGGAACGGAGGGAG | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2484 | 2878 | 4.098894 | ACAAGTATTTAGGAACGGAGGGA | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
2485 | 2879 | 4.161754 | AGACAAGTATTTAGGAACGGAGGG | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2486 | 2880 | 5.340439 | AGACAAGTATTTAGGAACGGAGG | 57.660 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
2487 | 2881 | 7.097834 | AGAAAGACAAGTATTTAGGAACGGAG | 58.902 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
2488 | 2882 | 7.001099 | AGAAAGACAAGTATTTAGGAACGGA | 57.999 | 36.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2489 | 2883 | 8.248945 | TCTAGAAAGACAAGTATTTAGGAACGG | 58.751 | 37.037 | 0.00 | 0.00 | 0.00 | 4.44 |
2490 | 2884 | 9.291664 | CTCTAGAAAGACAAGTATTTAGGAACG | 57.708 | 37.037 | 0.00 | 0.00 | 0.00 | 3.95 |
2501 | 2895 | 8.964476 | TTGTTGAAATCTCTAGAAAGACAAGT | 57.036 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
2502 | 2896 | 9.050601 | ACTTGTTGAAATCTCTAGAAAGACAAG | 57.949 | 33.333 | 17.75 | 17.75 | 33.18 | 3.16 |
2503 | 2897 | 8.830580 | CACTTGTTGAAATCTCTAGAAAGACAA | 58.169 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2504 | 2898 | 8.204160 | TCACTTGTTGAAATCTCTAGAAAGACA | 58.796 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
2505 | 2899 | 8.491950 | GTCACTTGTTGAAATCTCTAGAAAGAC | 58.508 | 37.037 | 0.00 | 0.00 | 35.39 | 3.01 |
2506 | 2900 | 8.424918 | AGTCACTTGTTGAAATCTCTAGAAAGA | 58.575 | 33.333 | 0.00 | 0.00 | 35.39 | 2.52 |
2507 | 2901 | 8.600449 | AGTCACTTGTTGAAATCTCTAGAAAG | 57.400 | 34.615 | 0.00 | 0.00 | 35.39 | 2.62 |
2508 | 2902 | 9.477484 | GTAGTCACTTGTTGAAATCTCTAGAAA | 57.523 | 33.333 | 0.00 | 0.00 | 35.39 | 2.52 |
2509 | 2903 | 8.638873 | TGTAGTCACTTGTTGAAATCTCTAGAA | 58.361 | 33.333 | 0.00 | 0.00 | 35.39 | 2.10 |
2510 | 2904 | 8.178313 | TGTAGTCACTTGTTGAAATCTCTAGA | 57.822 | 34.615 | 0.00 | 0.00 | 35.39 | 2.43 |
2511 | 2905 | 8.994429 | ATGTAGTCACTTGTTGAAATCTCTAG | 57.006 | 34.615 | 0.00 | 0.00 | 35.39 | 2.43 |
2512 | 2906 | 9.856488 | GTATGTAGTCACTTGTTGAAATCTCTA | 57.144 | 33.333 | 0.00 | 0.00 | 35.39 | 2.43 |
2513 | 2907 | 7.542477 | CGTATGTAGTCACTTGTTGAAATCTCT | 59.458 | 37.037 | 0.00 | 0.00 | 35.39 | 3.10 |
2514 | 2908 | 7.201444 | CCGTATGTAGTCACTTGTTGAAATCTC | 60.201 | 40.741 | 0.00 | 0.00 | 35.39 | 2.75 |
2515 | 2909 | 6.590292 | CCGTATGTAGTCACTTGTTGAAATCT | 59.410 | 38.462 | 0.00 | 0.00 | 35.39 | 2.40 |
2516 | 2910 | 6.672357 | GCCGTATGTAGTCACTTGTTGAAATC | 60.672 | 42.308 | 0.00 | 0.00 | 35.39 | 2.17 |
2517 | 2911 | 5.121768 | GCCGTATGTAGTCACTTGTTGAAAT | 59.878 | 40.000 | 0.00 | 0.00 | 35.39 | 2.17 |
2518 | 2912 | 4.449743 | GCCGTATGTAGTCACTTGTTGAAA | 59.550 | 41.667 | 0.00 | 0.00 | 35.39 | 2.69 |
2519 | 2913 | 3.991773 | GCCGTATGTAGTCACTTGTTGAA | 59.008 | 43.478 | 0.00 | 0.00 | 35.39 | 2.69 |
2520 | 2914 | 3.581755 | GCCGTATGTAGTCACTTGTTGA | 58.418 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
2521 | 2915 | 2.344441 | CGCCGTATGTAGTCACTTGTTG | 59.656 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2522 | 2916 | 2.602878 | CGCCGTATGTAGTCACTTGTT | 58.397 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
2523 | 2917 | 1.734707 | GCGCCGTATGTAGTCACTTGT | 60.735 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
2524 | 2918 | 0.921347 | GCGCCGTATGTAGTCACTTG | 59.079 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2525 | 2919 | 0.528924 | TGCGCCGTATGTAGTCACTT | 59.471 | 50.000 | 4.18 | 0.00 | 0.00 | 3.16 |
2526 | 2920 | 0.528924 | TTGCGCCGTATGTAGTCACT | 59.471 | 50.000 | 4.18 | 0.00 | 0.00 | 3.41 |
2527 | 2921 | 1.352114 | TTTGCGCCGTATGTAGTCAC | 58.648 | 50.000 | 4.18 | 0.00 | 0.00 | 3.67 |
2528 | 2922 | 2.081725 | TTTTGCGCCGTATGTAGTCA | 57.918 | 45.000 | 4.18 | 0.00 | 0.00 | 3.41 |
2529 | 2923 | 2.605818 | TCATTTTGCGCCGTATGTAGTC | 59.394 | 45.455 | 4.18 | 0.00 | 0.00 | 2.59 |
2530 | 2924 | 2.607635 | CTCATTTTGCGCCGTATGTAGT | 59.392 | 45.455 | 4.18 | 0.00 | 0.00 | 2.73 |
2531 | 2925 | 2.607635 | ACTCATTTTGCGCCGTATGTAG | 59.392 | 45.455 | 4.18 | 7.56 | 0.00 | 2.74 |
2532 | 2926 | 2.350192 | CACTCATTTTGCGCCGTATGTA | 59.650 | 45.455 | 4.18 | 0.00 | 0.00 | 2.29 |
2533 | 2927 | 1.130373 | CACTCATTTTGCGCCGTATGT | 59.870 | 47.619 | 4.18 | 0.00 | 0.00 | 2.29 |
2534 | 2928 | 1.396648 | TCACTCATTTTGCGCCGTATG | 59.603 | 47.619 | 4.18 | 5.63 | 0.00 | 2.39 |
2535 | 2929 | 1.732941 | TCACTCATTTTGCGCCGTAT | 58.267 | 45.000 | 4.18 | 0.00 | 0.00 | 3.06 |
2536 | 2930 | 1.514003 | TTCACTCATTTTGCGCCGTA | 58.486 | 45.000 | 4.18 | 0.00 | 0.00 | 4.02 |
2537 | 2931 | 0.881118 | ATTCACTCATTTTGCGCCGT | 59.119 | 45.000 | 4.18 | 0.00 | 0.00 | 5.68 |
2538 | 2932 | 1.131126 | AGATTCACTCATTTTGCGCCG | 59.869 | 47.619 | 4.18 | 0.00 | 0.00 | 6.46 |
2539 | 2933 | 2.927553 | AGATTCACTCATTTTGCGCC | 57.072 | 45.000 | 4.18 | 0.00 | 0.00 | 6.53 |
2540 | 2934 | 4.091424 | GTGTAGATTCACTCATTTTGCGC | 58.909 | 43.478 | 0.00 | 0.00 | 35.68 | 6.09 |
2541 | 2935 | 5.536554 | AGTGTAGATTCACTCATTTTGCG | 57.463 | 39.130 | 0.00 | 0.00 | 44.07 | 4.85 |
2542 | 2936 | 9.677567 | TTTAAAGTGTAGATTCACTCATTTTGC | 57.322 | 29.630 | 0.00 | 0.00 | 46.25 | 3.68 |
2579 | 2973 | 5.808366 | ATGGACTCAACATACGGATGTAT | 57.192 | 39.130 | 15.10 | 0.00 | 45.93 | 2.29 |
2580 | 2974 | 5.607939 | AATGGACTCAACATACGGATGTA | 57.392 | 39.130 | 15.10 | 0.00 | 45.93 | 2.29 |
2582 | 2976 | 6.918892 | TTAAATGGACTCAACATACGGATG | 57.081 | 37.500 | 5.94 | 5.94 | 39.16 | 3.51 |
2583 | 2977 | 7.931578 | TTTTAAATGGACTCAACATACGGAT | 57.068 | 32.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2584 | 2978 | 7.627513 | GCATTTTAAATGGACTCAACATACGGA | 60.628 | 37.037 | 17.89 | 0.00 | 0.00 | 4.69 |
2585 | 2979 | 6.472163 | GCATTTTAAATGGACTCAACATACGG | 59.528 | 38.462 | 17.89 | 0.00 | 0.00 | 4.02 |
2586 | 2980 | 6.472163 | GGCATTTTAAATGGACTCAACATACG | 59.528 | 38.462 | 17.89 | 0.00 | 0.00 | 3.06 |
2587 | 2981 | 7.547227 | AGGCATTTTAAATGGACTCAACATAC | 58.453 | 34.615 | 17.89 | 0.00 | 0.00 | 2.39 |
2588 | 2982 | 7.716799 | AGGCATTTTAAATGGACTCAACATA | 57.283 | 32.000 | 17.89 | 0.00 | 0.00 | 2.29 |
2589 | 2983 | 6.610075 | AGGCATTTTAAATGGACTCAACAT | 57.390 | 33.333 | 17.89 | 0.00 | 0.00 | 2.71 |
2590 | 2984 | 6.945435 | TCTAGGCATTTTAAATGGACTCAACA | 59.055 | 34.615 | 17.89 | 0.00 | 0.00 | 3.33 |
2591 | 2985 | 7.391148 | TCTAGGCATTTTAAATGGACTCAAC | 57.609 | 36.000 | 17.89 | 1.13 | 0.00 | 3.18 |
2592 | 2986 | 8.415950 | TTTCTAGGCATTTTAAATGGACTCAA | 57.584 | 30.769 | 17.89 | 2.83 | 0.00 | 3.02 |
2593 | 2987 | 7.888021 | TCTTTCTAGGCATTTTAAATGGACTCA | 59.112 | 33.333 | 17.89 | 0.00 | 0.00 | 3.41 |
2594 | 2988 | 8.184848 | GTCTTTCTAGGCATTTTAAATGGACTC | 58.815 | 37.037 | 17.89 | 2.75 | 0.00 | 3.36 |
2595 | 2989 | 7.669722 | TGTCTTTCTAGGCATTTTAAATGGACT | 59.330 | 33.333 | 17.89 | 9.51 | 29.10 | 3.85 |
2596 | 2990 | 7.826690 | TGTCTTTCTAGGCATTTTAAATGGAC | 58.173 | 34.615 | 17.89 | 13.56 | 29.10 | 4.02 |
2597 | 2991 | 8.415950 | TTGTCTTTCTAGGCATTTTAAATGGA | 57.584 | 30.769 | 17.89 | 5.27 | 35.56 | 3.41 |
2598 | 2992 | 8.306761 | ACTTGTCTTTCTAGGCATTTTAAATGG | 58.693 | 33.333 | 17.89 | 3.11 | 35.56 | 3.16 |
2604 | 2998 | 8.306761 | CCAAATACTTGTCTTTCTAGGCATTTT | 58.693 | 33.333 | 0.00 | 0.00 | 35.56 | 1.82 |
2605 | 2999 | 7.093771 | CCCAAATACTTGTCTTTCTAGGCATTT | 60.094 | 37.037 | 0.00 | 0.00 | 35.56 | 2.32 |
2606 | 3000 | 6.378280 | CCCAAATACTTGTCTTTCTAGGCATT | 59.622 | 38.462 | 0.00 | 0.00 | 35.56 | 3.56 |
2607 | 3001 | 5.888161 | CCCAAATACTTGTCTTTCTAGGCAT | 59.112 | 40.000 | 0.00 | 0.00 | 35.56 | 4.40 |
2608 | 3002 | 5.013704 | TCCCAAATACTTGTCTTTCTAGGCA | 59.986 | 40.000 | 0.00 | 0.00 | 33.22 | 4.75 |
2609 | 3003 | 5.497474 | TCCCAAATACTTGTCTTTCTAGGC | 58.503 | 41.667 | 0.00 | 0.00 | 0.00 | 3.93 |
2610 | 3004 | 6.092259 | CGTTCCCAAATACTTGTCTTTCTAGG | 59.908 | 42.308 | 0.00 | 0.00 | 0.00 | 3.02 |
2611 | 3005 | 6.092259 | CCGTTCCCAAATACTTGTCTTTCTAG | 59.908 | 42.308 | 0.00 | 0.00 | 0.00 | 2.43 |
2612 | 3006 | 5.935789 | CCGTTCCCAAATACTTGTCTTTCTA | 59.064 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2613 | 3007 | 4.760204 | CCGTTCCCAAATACTTGTCTTTCT | 59.240 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
2614 | 3008 | 4.758165 | TCCGTTCCCAAATACTTGTCTTTC | 59.242 | 41.667 | 0.00 | 0.00 | 0.00 | 2.62 |
2615 | 3009 | 4.721132 | TCCGTTCCCAAATACTTGTCTTT | 58.279 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
2616 | 3010 | 4.324267 | CTCCGTTCCCAAATACTTGTCTT | 58.676 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
2617 | 3011 | 3.307480 | CCTCCGTTCCCAAATACTTGTCT | 60.307 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
2618 | 3012 | 3.007635 | CCTCCGTTCCCAAATACTTGTC | 58.992 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2619 | 3013 | 2.290705 | CCCTCCGTTCCCAAATACTTGT | 60.291 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2620 | 3014 | 2.026636 | TCCCTCCGTTCCCAAATACTTG | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2621 | 3015 | 2.238898 | CTCCCTCCGTTCCCAAATACTT | 59.761 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2622 | 3016 | 1.838077 | CTCCCTCCGTTCCCAAATACT | 59.162 | 52.381 | 0.00 | 0.00 | 0.00 | 2.12 |
2623 | 3017 | 1.558294 | ACTCCCTCCGTTCCCAAATAC | 59.442 | 52.381 | 0.00 | 0.00 | 0.00 | 1.89 |
2624 | 3018 | 1.961133 | ACTCCCTCCGTTCCCAAATA | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2625 | 3019 | 1.838077 | CTACTCCCTCCGTTCCCAAAT | 59.162 | 52.381 | 0.00 | 0.00 | 0.00 | 2.32 |
2626 | 3020 | 1.203212 | TCTACTCCCTCCGTTCCCAAA | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.28 |
2627 | 3021 | 0.410663 | TCTACTCCCTCCGTTCCCAA | 59.589 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
2628 | 3022 | 0.410663 | TTCTACTCCCTCCGTTCCCA | 59.589 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
2629 | 3023 | 1.112950 | CTTCTACTCCCTCCGTTCCC | 58.887 | 60.000 | 0.00 | 0.00 | 0.00 | 3.97 |
2630 | 3024 | 1.849977 | ACTTCTACTCCCTCCGTTCC | 58.150 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2631 | 3025 | 3.957591 | AAACTTCTACTCCCTCCGTTC | 57.042 | 47.619 | 0.00 | 0.00 | 0.00 | 3.95 |
2632 | 3026 | 3.513119 | GGTAAACTTCTACTCCCTCCGTT | 59.487 | 47.826 | 0.00 | 0.00 | 0.00 | 4.44 |
2633 | 3027 | 3.095332 | GGTAAACTTCTACTCCCTCCGT | 58.905 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2634 | 3028 | 3.094572 | TGGTAAACTTCTACTCCCTCCG | 58.905 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2635 | 3029 | 4.351127 | TCTGGTAAACTTCTACTCCCTCC | 58.649 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
2636 | 3030 | 7.842887 | ATATCTGGTAAACTTCTACTCCCTC | 57.157 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2637 | 3031 | 7.729431 | GGTATATCTGGTAAACTTCTACTCCCT | 59.271 | 40.741 | 0.00 | 0.00 | 0.00 | 4.20 |
2638 | 3032 | 7.039152 | GGGTATATCTGGTAAACTTCTACTCCC | 60.039 | 44.444 | 0.00 | 0.00 | 0.00 | 4.30 |
2639 | 3033 | 7.729431 | AGGGTATATCTGGTAAACTTCTACTCC | 59.271 | 40.741 | 0.00 | 0.00 | 0.00 | 3.85 |
2640 | 3034 | 8.709272 | AGGGTATATCTGGTAAACTTCTACTC | 57.291 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
2641 | 3035 | 8.287350 | TGAGGGTATATCTGGTAAACTTCTACT | 58.713 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2642 | 3036 | 8.474710 | TGAGGGTATATCTGGTAAACTTCTAC | 57.525 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
2651 | 3045 | 3.895656 | GCACACTGAGGGTATATCTGGTA | 59.104 | 47.826 | 0.00 | 0.00 | 0.00 | 3.25 |
2734 | 3128 | 8.570488 | GTGATAACTGATAATTTCATCATGGCA | 58.430 | 33.333 | 0.00 | 0.00 | 34.50 | 4.92 |
2818 | 3212 | 2.052782 | ATCATCAAACGTTAGGGGCC | 57.947 | 50.000 | 0.00 | 0.00 | 0.00 | 5.80 |
3095 | 3496 | 5.737635 | GCACTGAGGGTATAGACATCAGTTC | 60.738 | 48.000 | 19.29 | 13.77 | 45.08 | 3.01 |
3204 | 3605 | 8.523915 | TGATAACCACTAAAAGTATACGGAGA | 57.476 | 34.615 | 0.00 | 0.00 | 0.00 | 3.71 |
3304 | 3705 | 1.567357 | ACAGCCCACAAACAAAGGTT | 58.433 | 45.000 | 0.00 | 0.00 | 39.43 | 3.50 |
3347 | 3748 | 3.264450 | AGCAGGTCCATAACTAAACAGCT | 59.736 | 43.478 | 0.00 | 0.00 | 0.00 | 4.24 |
3710 | 4114 | 7.786178 | TGCTTATGTCAAGATGGTTGTATAC | 57.214 | 36.000 | 0.00 | 0.00 | 0.00 | 1.47 |
4080 | 4499 | 6.322712 | TGCCATTACCACTTCAAAAAGTAACT | 59.677 | 34.615 | 0.00 | 0.00 | 43.99 | 2.24 |
4156 | 4575 | 1.289160 | ATCCCAGCTCCAGCAAGTAA | 58.711 | 50.000 | 0.48 | 0.00 | 45.16 | 2.24 |
4191 | 4610 | 0.809636 | GCACAAACACCCAAACAGGC | 60.810 | 55.000 | 0.00 | 0.00 | 35.39 | 4.85 |
4214 | 4633 | 5.408909 | CACAATGCTGATCATAGAGGTCATC | 59.591 | 44.000 | 0.00 | 0.00 | 34.33 | 2.92 |
4454 | 4875 | 7.725251 | TGACTGATTTGTCCAAATTTTAGCTT | 58.275 | 30.769 | 6.70 | 0.00 | 40.77 | 3.74 |
4455 | 4876 | 7.288810 | TGACTGATTTGTCCAAATTTTAGCT | 57.711 | 32.000 | 6.70 | 0.00 | 40.77 | 3.32 |
4487 | 4908 | 2.278596 | CTACCGTGTCCGATGCCG | 60.279 | 66.667 | 0.00 | 0.00 | 35.63 | 5.69 |
4505 | 4927 | 0.245539 | TTGACGTGGGCTAGTACTGC | 59.754 | 55.000 | 5.39 | 7.18 | 0.00 | 4.40 |
4508 | 4930 | 2.071540 | GGTTTTGACGTGGGCTAGTAC | 58.928 | 52.381 | 0.00 | 0.00 | 0.00 | 2.73 |
4511 | 4933 | 1.892209 | AAGGTTTTGACGTGGGCTAG | 58.108 | 50.000 | 0.00 | 0.00 | 0.00 | 3.42 |
4541 | 4979 | 8.749354 | CAAAGTTAAGCCTAACCAAATATTCCT | 58.251 | 33.333 | 1.48 | 0.00 | 38.59 | 3.36 |
4585 | 5023 | 3.692791 | AAGACGAAAAGCACCTGTTTC | 57.307 | 42.857 | 0.00 | 0.00 | 0.00 | 2.78 |
4589 | 5027 | 3.555518 | GCTTAAAGACGAAAAGCACCTG | 58.444 | 45.455 | 0.00 | 0.00 | 43.98 | 4.00 |
4600 | 5048 | 5.458779 | CCTTTTGAAGTTTGGCTTAAAGACG | 59.541 | 40.000 | 0.00 | 0.00 | 35.96 | 4.18 |
4717 | 5165 | 2.876079 | GCACTTCAGTCCTTAACCCTGG | 60.876 | 54.545 | 0.00 | 0.00 | 0.00 | 4.45 |
4724 | 5172 | 3.935993 | GGCTGCACTTCAGTCCTTA | 57.064 | 52.632 | 0.50 | 0.00 | 44.66 | 2.69 |
4777 | 5225 | 6.942532 | TGTTTCAAACTCAGTTGCTCTTAT | 57.057 | 33.333 | 1.10 | 0.00 | 0.00 | 1.73 |
5057 | 5524 | 8.715088 | ACGATGTTAGTTAAATTGTGGTACTTC | 58.285 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.