Multiple sequence alignment - TraesCS3B01G214900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G214900 chr3B 100.000 9342 0 0 1 9342 255983200 255992541 0.000000e+00 17252.0
1 TraesCS3B01G214900 chr3B 78.889 450 68 18 61 486 670203872 670204318 7.140000e-71 279.0
2 TraesCS3B01G214900 chr3B 94.737 57 3 0 8861 8917 255991988 255992044 1.290000e-13 89.8
3 TraesCS3B01G214900 chr3B 94.737 57 3 0 8789 8845 255992060 255992116 1.290000e-13 89.8
4 TraesCS3B01G214900 chr3B 91.304 46 4 0 1 46 478077728 478077683 7.830000e-06 63.9
5 TraesCS3B01G214900 chr3A 95.651 3794 132 16 612 4397 217713562 217717330 0.000000e+00 6061.0
6 TraesCS3B01G214900 chr3A 97.735 1545 29 3 4382 5926 217720640 217722178 0.000000e+00 2654.0
7 TraesCS3B01G214900 chr3A 94.959 1111 38 7 7655 8757 217722177 217723277 0.000000e+00 1725.0
8 TraesCS3B01G214900 chr3A 91.873 283 15 3 8928 9209 217723602 217723877 1.140000e-103 388.0
9 TraesCS3B01G214900 chr3A 91.500 200 16 1 1 199 217351884 217352083 3.320000e-69 274.0
10 TraesCS3B01G214900 chr3A 82.996 247 11 12 8786 9024 217723378 217723601 2.660000e-45 195.0
11 TraesCS3B01G214900 chr3A 86.813 182 8 7 8744 8925 217723391 217723556 1.240000e-43 189.0
12 TraesCS3B01G214900 chr3A 94.118 102 6 0 8744 8845 217723447 217723548 1.260000e-33 156.0
13 TraesCS3B01G214900 chr3A 89.535 86 7 2 244 329 217713206 217713289 3.570000e-19 108.0
14 TraesCS3B01G214900 chr3A 84.685 111 9 3 8862 8964 217723381 217723491 4.610000e-18 104.0
15 TraesCS3B01G214900 chr3A 95.652 46 2 0 8744 8789 217723503 217723548 3.620000e-09 75.0
16 TraesCS3B01G214900 chr3A 97.368 38 1 0 8808 8845 217723602 217723639 2.180000e-06 65.8
17 TraesCS3B01G214900 chr3D 96.119 3710 96 15 2248 5946 177025211 177028883 0.000000e+00 6010.0
18 TraesCS3B01G214900 chr3D 96.188 1679 61 2 659 2336 177023577 177025253 0.000000e+00 2743.0
19 TraesCS3B01G214900 chr3D 93.980 1113 41 8 7655 8757 177028859 177029955 0.000000e+00 1661.0
20 TraesCS3B01G214900 chr3D 88.889 477 23 10 125 580 177015909 177016376 2.280000e-155 560.0
21 TraesCS3B01G214900 chr3D 82.243 428 36 23 8786 9209 177030057 177030448 5.410000e-87 333.0
22 TraesCS3B01G214900 chr3D 96.377 138 3 2 1 138 177013952 177014087 9.440000e-55 226.0
23 TraesCS3B01G214900 chr3D 86.264 182 9 7 8744 8925 177030070 177030235 5.760000e-42 183.0
24 TraesCS3B01G214900 chr3D 94.175 103 5 1 8743 8845 177030126 177030227 1.260000e-33 156.0
25 TraesCS3B01G214900 chr3D 94.643 56 3 0 8862 8917 177030060 177030115 4.650000e-13 87.9
26 TraesCS3B01G214900 chr3D 79.528 127 17 6 9221 9342 132850630 132850508 2.160000e-11 82.4
27 TraesCS3B01G214900 chr3D 93.478 46 3 0 1 46 366922781 366922736 1.680000e-07 69.4
28 TraesCS3B01G214900 chr3D 93.478 46 3 0 1 46 514368056 514368011 1.680000e-07 69.4
29 TraesCS3B01G214900 chr3D 91.304 46 4 0 1 46 366922858 366922903 7.830000e-06 63.9
30 TraesCS3B01G214900 chr3D 90.476 42 2 2 4234 4275 253553891 253553852 5.000000e-03 54.7
31 TraesCS3B01G214900 chr3D 100.000 28 0 0 8958 8985 13757920 13757893 1.700000e-02 52.8
32 TraesCS3B01G214900 chr3D 100.000 28 0 0 8963 8990 19898998 19898971 1.700000e-02 52.8
33 TraesCS3B01G214900 chr5A 98.610 1727 22 2 5938 7663 37638231 37639956 0.000000e+00 3055.0
34 TraesCS3B01G214900 chr5A 90.826 109 10 0 9234 9342 458216282 458216390 7.560000e-31 147.0
35 TraesCS3B01G214900 chr5A 100.000 29 0 0 8962 8990 494455209 494455237 5.000000e-03 54.7
36 TraesCS3B01G214900 chr5A 100.000 29 0 0 8962 8990 494459897 494459925 5.000000e-03 54.7
37 TraesCS3B01G214900 chr4A 95.941 1749 63 8 5930 7673 153046623 153048368 0.000000e+00 2830.0
38 TraesCS3B01G214900 chr4A 80.749 187 23 10 243 422 679680441 679680261 5.890000e-27 134.0
39 TraesCS3B01G214900 chr4A 81.395 86 11 5 4224 4308 597826924 597827005 2.180000e-06 65.8
40 TraesCS3B01G214900 chr4A 84.375 64 6 2 4235 4297 642639966 642640026 1.010000e-04 60.2
41 TraesCS3B01G214900 chr4A 100.000 32 0 0 8958 8989 734109010 734108979 1.010000e-04 60.2
42 TraesCS3B01G214900 chr5B 95.775 1728 69 4 5937 7661 55537134 55535408 0.000000e+00 2784.0
43 TraesCS3B01G214900 chr5B 95.465 1742 66 8 5928 7663 577298334 577300068 0.000000e+00 2767.0
44 TraesCS3B01G214900 chr5B 76.527 311 55 14 64 365 333254832 333255133 4.520000e-33 154.0
45 TraesCS3B01G214900 chr5B 83.459 133 17 5 9209 9338 211317517 211317647 1.650000e-22 119.0
46 TraesCS3B01G214900 chrUn 95.465 1742 71 6 5933 7671 82576791 82578527 0.000000e+00 2772.0
47 TraesCS3B01G214900 chrUn 94.652 1739 84 7 5934 7664 77075066 77076803 0.000000e+00 2687.0
48 TraesCS3B01G214900 chrUn 94.595 37 1 1 4225 4261 86630971 86631006 1.000000e-03 56.5
49 TraesCS3B01G214900 chr7B 95.376 1730 77 3 5936 7663 275634717 275632989 0.000000e+00 2748.0
50 TraesCS3B01G214900 chr7B 95.057 1740 82 4 5943 7679 73718832 73717094 0.000000e+00 2734.0
51 TraesCS3B01G214900 chr2B 94.489 1742 86 7 5941 7673 714488615 714486875 0.000000e+00 2676.0
52 TraesCS3B01G214900 chr2B 80.000 125 18 6 9221 9342 78838533 78838653 1.670000e-12 86.1
53 TraesCS3B01G214900 chr2B 96.875 32 1 0 8962 8993 107530877 107530846 5.000000e-03 54.7
54 TraesCS3B01G214900 chr1D 85.306 245 30 6 63 305 471437771 471437531 2.010000e-61 248.0
55 TraesCS3B01G214900 chr1D 89.474 133 14 0 9210 9342 207659499 207659631 1.610000e-37 169.0
56 TraesCS3B01G214900 chr1D 100.000 28 0 0 8958 8985 483877397 483877370 1.700000e-02 52.8
57 TraesCS3B01G214900 chr7D 77.578 446 62 26 52 474 596431541 596431971 1.570000e-57 235.0
58 TraesCS3B01G214900 chr7D 86.364 132 16 2 9212 9342 284281658 284281528 9.780000e-30 143.0
59 TraesCS3B01G214900 chr7D 85.039 127 17 2 9217 9342 284237841 284237966 2.740000e-25 128.0
60 TraesCS3B01G214900 chr1B 87.313 134 15 1 172 305 655286730 655286599 1.620000e-32 152.0
61 TraesCS3B01G214900 chr1B 82.443 131 22 1 9209 9338 270594349 270594219 7.670000e-21 113.0
62 TraesCS3B01G214900 chr2D 85.926 135 17 2 9209 9342 450536135 450536002 9.780000e-30 143.0
63 TraesCS3B01G214900 chr2D 100.000 29 0 0 8962 8990 585383750 585383722 5.000000e-03 54.7
64 TraesCS3B01G214900 chr2D 100.000 28 0 0 8960 8987 80363922 80363895 1.700000e-02 52.8
65 TraesCS3B01G214900 chr2A 93.333 45 2 1 4218 4262 184498515 184498558 2.180000e-06 65.8
66 TraesCS3B01G214900 chr2A 94.737 38 0 2 4228 4265 19379138 19379103 3.640000e-04 58.4
67 TraesCS3B01G214900 chr4B 76.378 127 25 5 9218 9342 331575987 331576110 7.830000e-06 63.9
68 TraesCS3B01G214900 chr5D 90.909 44 2 2 4234 4277 300758574 300758615 3.640000e-04 58.4
69 TraesCS3B01G214900 chr6D 97.059 34 0 1 8958 8990 28645360 28645327 1.000000e-03 56.5
70 TraesCS3B01G214900 chr6B 88.889 45 5 0 8960 9004 146665430 146665474 1.000000e-03 56.5
71 TraesCS3B01G214900 chr6A 100.000 29 0 0 8962 8990 610391307 610391279 5.000000e-03 54.7
72 TraesCS3B01G214900 chr6A 100.000 28 0 0 8962 8989 33015788 33015815 1.700000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G214900 chr3B 255983200 255992541 9341 False 5810.533333 17252 96.491333 1 9342 3 chr3B.!!$F2 9341
1 TraesCS3B01G214900 chr3A 217713206 217723877 10671 False 1065.527273 6061 91.944091 244 9209 11 chr3A.!!$F2 8965
2 TraesCS3B01G214900 chr3D 177023577 177030448 6871 False 1596.271429 6010 91.944571 659 9209 7 chr3D.!!$F3 8550
3 TraesCS3B01G214900 chr3D 177013952 177016376 2424 False 393.000000 560 92.633000 1 580 2 chr3D.!!$F2 579
4 TraesCS3B01G214900 chr5A 37638231 37639956 1725 False 3055.000000 3055 98.610000 5938 7663 1 chr5A.!!$F1 1725
5 TraesCS3B01G214900 chr4A 153046623 153048368 1745 False 2830.000000 2830 95.941000 5930 7673 1 chr4A.!!$F1 1743
6 TraesCS3B01G214900 chr5B 55535408 55537134 1726 True 2784.000000 2784 95.775000 5937 7661 1 chr5B.!!$R1 1724
7 TraesCS3B01G214900 chr5B 577298334 577300068 1734 False 2767.000000 2767 95.465000 5928 7663 1 chr5B.!!$F3 1735
8 TraesCS3B01G214900 chrUn 82576791 82578527 1736 False 2772.000000 2772 95.465000 5933 7671 1 chrUn.!!$F2 1738
9 TraesCS3B01G214900 chrUn 77075066 77076803 1737 False 2687.000000 2687 94.652000 5934 7664 1 chrUn.!!$F1 1730
10 TraesCS3B01G214900 chr7B 275632989 275634717 1728 True 2748.000000 2748 95.376000 5936 7663 1 chr7B.!!$R2 1727
11 TraesCS3B01G214900 chr7B 73717094 73718832 1738 True 2734.000000 2734 95.057000 5943 7679 1 chr7B.!!$R1 1736
12 TraesCS3B01G214900 chr2B 714486875 714488615 1740 True 2676.000000 2676 94.489000 5941 7673 1 chr2B.!!$R2 1732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
844 2749 0.699399 TCTCTTCTCGGGGACTGACT 59.301 55.000 0.00 0.00 39.80 3.41 F
1589 3496 0.028770 CTCGCTCTCATCACCGTCTC 59.971 60.000 0.00 0.00 0.00 3.36 F
2047 3957 0.107897 TATAGGTGTTGGCGTGCCTG 60.108 55.000 12.84 0.00 36.94 4.85 F
2125 4035 0.251787 GGGCAGGGGTGTTCAAATCT 60.252 55.000 0.00 0.00 0.00 2.40 F
2128 4038 1.547675 GCAGGGGTGTTCAAATCTGGA 60.548 52.381 0.00 0.00 0.00 3.86 F
3656 5618 1.667724 CGGCTGAAGCAGGAGTAAATG 59.332 52.381 4.43 0.00 44.36 2.32 F
4551 9840 2.454538 TGTTGGTTGCATGCCATCATA 58.545 42.857 16.68 0.14 35.71 2.15 F
5384 10673 2.040544 GGCTGTTGTCCATGACCCG 61.041 63.158 0.00 0.00 0.00 5.28 F
5846 11135 0.911769 TCTCCGTGCATTGATCCCTT 59.088 50.000 0.00 0.00 0.00 3.95 F
5887 11176 1.858091 ACAGCTGTCGAGTTGAACTG 58.142 50.000 15.25 0.00 34.62 3.16 F
7010 12315 2.357569 GGGCCTCTTGGATGAACAGAAT 60.358 50.000 0.84 0.00 34.57 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1734 3641 0.034198 TGAAAGTTGATGACCGGCGA 59.966 50.000 9.30 0.00 0.00 5.54 R
2427 4383 0.835276 ATAGCTCCAGTGCAGCATCA 59.165 50.000 9.15 0.00 39.56 3.07 R
3344 5306 0.950836 CAGCCGACCACATGTTTTGA 59.049 50.000 0.00 0.00 0.00 2.69 R
4105 6067 3.254166 GCCCATAGGTCATTAGCAATGTG 59.746 47.826 8.19 1.37 39.87 3.21 R
4198 6162 4.545823 TCCTTTTTGAGCAAGTACAACG 57.454 40.909 0.00 0.00 0.00 4.10 R
5371 10660 0.608035 GAAAGCCGGGTCATGGACAA 60.608 55.000 6.62 0.00 33.68 3.18 R
5800 11089 6.158598 TCAAGCTTCCAAAATAGCATTTCAC 58.841 36.000 0.00 0.00 39.85 3.18 R
6716 12020 0.849417 GCAAATCCCTCTCCCCTCAT 59.151 55.000 0.00 0.00 0.00 2.90 R
7509 12820 2.168666 GAGAAACCCGCTTCTCCCGT 62.169 60.000 2.73 0.00 43.73 5.28 R
7866 13183 3.156293 TGGTCCATGTTCACTTCAATGG 58.844 45.455 0.00 0.00 0.00 3.16 R
8848 14303 1.007963 AGGGAGTACGGAATGAAGGGA 59.992 52.381 0.00 0.00 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 6.644248 TTTCAAACTTTTAAGGCCTACTCC 57.356 37.500 5.16 0.00 0.00 3.85
148 1984 4.084013 CGGATGGACTTTTAATCATACGGC 60.084 45.833 0.00 0.00 39.48 5.68
150 1986 4.223556 TGGACTTTTAATCATACGGCCA 57.776 40.909 2.24 0.00 0.00 5.36
165 2001 2.101700 GCCAGAGCCAAATCTTCCG 58.898 57.895 0.00 0.00 0.00 4.30
168 2004 2.280628 CCAGAGCCAAATCTTCCGTAC 58.719 52.381 0.00 0.00 0.00 3.67
179 2015 2.695359 TCTTCCGTACCAATGTTCTGC 58.305 47.619 0.00 0.00 0.00 4.26
220 2056 4.534103 AGAAAGAGGTTCTGCAACTATCCT 59.466 41.667 0.00 0.00 45.29 3.24
221 2057 4.479786 AAGAGGTTCTGCAACTATCCTC 57.520 45.455 12.24 12.24 40.94 3.71
222 2058 3.718723 AGAGGTTCTGCAACTATCCTCT 58.281 45.455 15.24 15.24 44.40 3.69
228 2064 5.105310 GGTTCTGCAACTATCCTCTCTTGTA 60.105 44.000 0.00 0.00 32.50 2.41
364 2218 8.900983 AATAATTTTGCAACACAACCTATGTT 57.099 26.923 0.00 0.00 41.46 2.71
365 2219 9.988815 AATAATTTTGCAACACAACCTATGTTA 57.011 25.926 0.00 0.00 41.46 2.41
367 2221 7.707774 ATTTTGCAACACAACCTATGTTAAC 57.292 32.000 0.00 0.00 41.46 2.01
375 2229 6.267070 ACACAACCTATGTTAACAAAAACCG 58.733 36.000 13.23 3.34 41.46 4.44
408 2262 1.601903 TGTTGCGAATGTCTCCACAAC 59.398 47.619 0.00 0.00 37.79 3.32
433 2319 4.940046 AGACATCTGTTGCAAAGTAGATGG 59.060 41.667 31.64 21.91 45.61 3.51
437 2323 4.569943 TCTGTTGCAAAGTAGATGGAGAC 58.430 43.478 0.00 0.00 0.00 3.36
518 2423 5.581085 CGTAGCTGCCCCATAATATAAGAAC 59.419 44.000 0.00 0.00 0.00 3.01
524 2429 7.360946 GCTGCCCCATAATATAAGAACGTTTAG 60.361 40.741 0.46 0.00 0.00 1.85
526 2431 8.380099 TGCCCCATAATATAAGAACGTTTAGAT 58.620 33.333 0.46 0.00 0.00 1.98
527 2432 8.880750 GCCCCATAATATAAGAACGTTTAGATC 58.119 37.037 0.46 0.00 0.00 2.75
528 2433 9.938280 CCCCATAATATAAGAACGTTTAGATCA 57.062 33.333 0.46 0.00 0.00 2.92
560 2465 8.437274 ACACTCTTATATTTATTCGGAGGGAT 57.563 34.615 0.00 0.00 0.00 3.85
561 2466 9.543231 ACACTCTTATATTTATTCGGAGGGATA 57.457 33.333 0.00 0.00 0.00 2.59
571 2476 8.441312 TTTATTCGGAGGGATAATTAACACAC 57.559 34.615 0.00 0.00 0.00 3.82
572 2477 5.687166 TTCGGAGGGATAATTAACACACT 57.313 39.130 0.00 0.00 0.00 3.55
574 2479 5.424757 TCGGAGGGATAATTAACACACTTG 58.575 41.667 0.00 0.00 0.00 3.16
575 2480 5.188163 TCGGAGGGATAATTAACACACTTGA 59.812 40.000 0.00 0.00 0.00 3.02
576 2481 5.878116 CGGAGGGATAATTAACACACTTGAA 59.122 40.000 0.00 0.00 0.00 2.69
577 2482 6.373216 CGGAGGGATAATTAACACACTTGAAA 59.627 38.462 0.00 0.00 0.00 2.69
578 2483 7.067008 CGGAGGGATAATTAACACACTTGAAAT 59.933 37.037 0.00 0.00 0.00 2.17
579 2484 9.403583 GGAGGGATAATTAACACACTTGAAATA 57.596 33.333 0.00 0.00 0.00 1.40
581 2486 9.975218 AGGGATAATTAACACACTTGAAATACT 57.025 29.630 0.00 0.00 0.00 2.12
587 2492 9.554724 AATTAACACACTTGAAATACTAATGCG 57.445 29.630 0.00 0.00 0.00 4.73
588 2493 4.969816 ACACACTTGAAATACTAATGCGC 58.030 39.130 0.00 0.00 0.00 6.09
589 2494 4.142687 ACACACTTGAAATACTAATGCGCC 60.143 41.667 4.18 0.00 0.00 6.53
590 2495 3.377172 ACACTTGAAATACTAATGCGCCC 59.623 43.478 4.18 0.00 0.00 6.13
591 2496 3.376859 CACTTGAAATACTAATGCGCCCA 59.623 43.478 4.18 0.00 0.00 5.36
592 2497 4.013728 ACTTGAAATACTAATGCGCCCAA 58.986 39.130 4.18 0.00 0.00 4.12
593 2498 4.096382 ACTTGAAATACTAATGCGCCCAAG 59.904 41.667 4.18 1.05 35.81 3.61
594 2499 2.948979 TGAAATACTAATGCGCCCAAGG 59.051 45.455 4.18 0.00 0.00 3.61
595 2500 1.981256 AATACTAATGCGCCCAAGGG 58.019 50.000 4.18 0.00 38.57 3.95
800 2705 1.418097 TTCTCCTCCAGCTGTTGCCA 61.418 55.000 13.81 0.00 40.80 4.92
844 2749 0.699399 TCTCTTCTCGGGGACTGACT 59.301 55.000 0.00 0.00 39.80 3.41
967 2873 2.866085 GAACAGCGCATCTGCCTCCT 62.866 60.000 11.47 0.00 46.76 3.69
1068 2974 4.733542 CCCCGCCCCACAAATCGT 62.734 66.667 0.00 0.00 0.00 3.73
1238 3144 1.897647 GCCTCTCCTACCAGGTCAGTT 60.898 57.143 0.00 0.00 36.53 3.16
1248 3154 0.976641 CAGGTCAGTTGGTAGCCTCA 59.023 55.000 0.00 0.00 0.00 3.86
1279 3185 4.425520 CCGAATCTTGACTAGTTCTGGTC 58.574 47.826 8.94 8.94 0.00 4.02
1300 3206 0.523546 CTTAGACGCGACGTGATGCT 60.524 55.000 15.93 11.24 41.37 3.79
1403 3310 2.334838 GTGTTCTACTAGCCACCAACG 58.665 52.381 0.00 0.00 0.00 4.10
1439 3346 5.961272 ACATTTTCGGTTGTGAAAGTTCTT 58.039 33.333 0.00 0.00 38.92 2.52
1490 3397 5.510520 GCTACAGGGAAGTAGAGATTGGATG 60.511 48.000 5.38 0.00 43.24 3.51
1515 3422 0.983467 TGAACATACTGCTGCCCTCA 59.017 50.000 0.00 0.00 0.00 3.86
1579 3486 0.171231 CGTCCATGAACTCGCTCTCA 59.829 55.000 0.00 0.00 0.00 3.27
1589 3496 0.028770 CTCGCTCTCATCACCGTCTC 59.971 60.000 0.00 0.00 0.00 3.36
1590 3497 0.676782 TCGCTCTCATCACCGTCTCA 60.677 55.000 0.00 0.00 0.00 3.27
1602 3509 2.022129 CGTCTCACCGCCACTTCAC 61.022 63.158 0.00 0.00 0.00 3.18
1701 3608 2.108514 ATGGTCATCGCCGCTGTTG 61.109 57.895 0.00 0.00 0.00 3.33
1717 3624 2.417933 CTGTTGCTAGCTCTTTCGCATT 59.582 45.455 17.23 0.00 31.77 3.56
1734 3641 2.295909 GCATTGTCTCGCCTCTATCTCT 59.704 50.000 0.00 0.00 0.00 3.10
1824 3731 3.063650 AGTGGCCCAGGAATGGTATAAT 58.936 45.455 0.00 0.00 0.00 1.28
1870 3777 3.703556 TGGACATCCAAGCAAGTTTTTCA 59.296 39.130 0.00 0.00 44.35 2.69
1957 3864 2.254152 AGTGGAGTGGCTAGGATTGA 57.746 50.000 0.00 0.00 0.00 2.57
1994 3901 1.285280 TGGGTGGATGGGTGTCTAAG 58.715 55.000 0.00 0.00 0.00 2.18
2047 3957 0.107897 TATAGGTGTTGGCGTGCCTG 60.108 55.000 12.84 0.00 36.94 4.85
2073 3983 1.667724 CTTGGCTTAGTCTGGCATTCG 59.332 52.381 0.00 0.00 39.67 3.34
2088 3998 3.065371 GGCATTCGAGAATTGGTTGGTAG 59.935 47.826 0.00 0.00 0.00 3.18
2125 4035 0.251787 GGGCAGGGGTGTTCAAATCT 60.252 55.000 0.00 0.00 0.00 2.40
2128 4038 1.547675 GCAGGGGTGTTCAAATCTGGA 60.548 52.381 0.00 0.00 0.00 3.86
2152 4062 4.657436 AAAATTAAACCGTGGAACTGCA 57.343 36.364 0.00 0.00 31.75 4.41
2155 4065 2.163818 TAAACCGTGGAACTGCAGAG 57.836 50.000 23.35 0.00 31.75 3.35
2302 4258 4.887615 GCTGGAGGCCTATGTTCC 57.112 61.111 4.42 2.28 34.27 3.62
2379 4335 3.269381 ACTGGGACATTCCAATACATGGT 59.731 43.478 0.00 0.00 44.73 3.55
2380 4336 4.264352 ACTGGGACATTCCAATACATGGTT 60.264 41.667 0.00 0.00 44.73 3.67
2546 4507 2.045524 AGTGAGTAGAGGCATCCCATG 58.954 52.381 0.00 0.00 0.00 3.66
2554 4515 4.736611 AGAGGCATCCCATGTCAATAAT 57.263 40.909 0.00 0.00 37.34 1.28
2567 4528 7.228706 CCCATGTCAATAATACCTGTTAAGACC 59.771 40.741 0.00 0.00 0.00 3.85
2661 4622 5.982890 ATCCTACTGGAACCAAAAACATG 57.017 39.130 0.00 0.00 46.80 3.21
2821 4782 8.747538 TCCTTATAAACTATTTCTTTGCTCCC 57.252 34.615 0.00 0.00 0.00 4.30
2856 4817 7.971183 GGAAGTTCTCCTATAGGCATTTAAG 57.029 40.000 14.50 5.28 41.61 1.85
2857 4818 6.937465 GGAAGTTCTCCTATAGGCATTTAAGG 59.063 42.308 14.50 0.00 41.61 2.69
2858 4819 5.870706 AGTTCTCCTATAGGCATTTAAGGC 58.129 41.667 14.50 0.00 34.44 4.35
2859 4820 5.369699 AGTTCTCCTATAGGCATTTAAGGCA 59.630 40.000 14.50 0.00 36.37 4.75
2860 4821 6.044871 AGTTCTCCTATAGGCATTTAAGGCAT 59.955 38.462 14.50 0.00 36.37 4.40
2861 4822 6.454223 TCTCCTATAGGCATTTAAGGCATT 57.546 37.500 14.50 0.00 36.37 3.56
2862 4823 6.852404 TCTCCTATAGGCATTTAAGGCATTT 58.148 36.000 14.50 0.00 36.37 2.32
2863 4824 7.984475 TCTCCTATAGGCATTTAAGGCATTTA 58.016 34.615 14.50 0.00 36.37 1.40
2864 4825 8.444783 TCTCCTATAGGCATTTAAGGCATTTAA 58.555 33.333 14.50 0.00 36.37 1.52
2873 4834 7.418483 GGCATTTAAGGCATTTAACCCTCATTA 60.418 37.037 3.55 0.00 31.11 1.90
2918 4879 8.279970 TCATTGAAGTACACCTATTGGAATTG 57.720 34.615 0.00 0.00 37.04 2.32
2977 4938 4.641396 TCAACTGTTAACTGACTGATGGG 58.359 43.478 18.21 0.60 0.00 4.00
3029 4990 2.350964 GGCACGCGTCTTCCAAATTTAA 60.351 45.455 9.86 0.00 0.00 1.52
3031 4992 3.917985 GCACGCGTCTTCCAAATTTAATT 59.082 39.130 9.86 0.00 0.00 1.40
3032 4993 4.030195 GCACGCGTCTTCCAAATTTAATTC 59.970 41.667 9.86 0.00 0.00 2.17
3033 4994 5.390613 CACGCGTCTTCCAAATTTAATTCT 58.609 37.500 9.86 0.00 0.00 2.40
3082 5043 6.765989 CAGGGCATATAGCTTAAGTGTTAACA 59.234 38.462 3.59 3.59 44.79 2.41
3084 5046 7.282450 AGGGCATATAGCTTAAGTGTTAACAAC 59.718 37.037 10.51 5.04 44.79 3.32
3189 5151 5.749596 TCCATTTTATATGTGCACCTTCG 57.250 39.130 15.69 0.00 0.00 3.79
3191 5153 5.295787 TCCATTTTATATGTGCACCTTCGAC 59.704 40.000 15.69 0.00 0.00 4.20
3339 5301 5.548181 TTGTCCTAGAGATCGAGCTACTA 57.452 43.478 1.61 6.44 0.00 1.82
3340 5302 5.548181 TGTCCTAGAGATCGAGCTACTAA 57.452 43.478 1.61 0.00 0.00 2.24
3344 5306 7.502895 TGTCCTAGAGATCGAGCTACTAAAATT 59.497 37.037 1.61 0.00 0.00 1.82
3450 5412 7.893124 ATTCTTGCAGGACATCATAAAGAAT 57.107 32.000 0.00 9.10 37.81 2.40
3478 5440 5.049818 CGAGTTTGGAGGATATTTGCATCTC 60.050 44.000 0.00 0.00 0.00 2.75
3656 5618 1.667724 CGGCTGAAGCAGGAGTAAATG 59.332 52.381 4.43 0.00 44.36 2.32
3657 5619 2.677902 CGGCTGAAGCAGGAGTAAATGA 60.678 50.000 4.43 0.00 44.36 2.57
3744 5706 4.397730 TGTATGCGTTGCCTCAAATATTGT 59.602 37.500 0.00 0.00 0.00 2.71
3867 5829 6.264832 CCATACAATGCAATTAACGTGACAT 58.735 36.000 0.00 0.00 32.46 3.06
3940 5902 8.823818 GCTTCTTAGTAAGAAAACTACAACACA 58.176 33.333 22.47 0.44 46.13 3.72
4139 6101 3.641906 GACCTATGGGCTCTGCTACTTTA 59.358 47.826 0.00 0.00 35.63 1.85
4198 6162 7.565323 AATTAAGATGTTCTTGAGATGGCTC 57.435 36.000 0.07 0.00 37.29 4.70
4297 6261 4.846779 TTGCATTTGTTTACAGAGGGAC 57.153 40.909 0.00 0.00 0.00 4.46
4305 6269 8.883731 CATTTGTTTACAGAGGGACTAATACAG 58.116 37.037 0.00 0.00 41.55 2.74
4309 6273 9.092338 TGTTTACAGAGGGACTAATACAGTTTA 57.908 33.333 0.00 0.00 41.55 2.01
4312 6276 7.793948 ACAGAGGGACTAATACAGTTTACTT 57.206 36.000 0.00 0.00 41.55 2.24
4458 9747 9.162764 TGTGTGTTAAATCTAAGATTTAGGCTC 57.837 33.333 0.00 0.00 0.00 4.70
4551 9840 2.454538 TGTTGGTTGCATGCCATCATA 58.545 42.857 16.68 0.14 35.71 2.15
4552 9841 3.032459 TGTTGGTTGCATGCCATCATAT 58.968 40.909 16.68 0.00 35.71 1.78
4643 9932 8.932791 ACACAGTAATATTATACGGCAATTAGC 58.067 33.333 0.00 0.00 44.65 3.09
4675 9964 2.694628 TGAGCATTGCTTTGTTTCACCT 59.305 40.909 13.35 0.00 39.88 4.00
4703 9992 4.577834 TCATGAGCATTGCATATTGTGG 57.422 40.909 11.91 0.00 0.00 4.17
4705 9994 2.737544 TGAGCATTGCATATTGTGGGT 58.262 42.857 11.91 0.00 0.00 4.51
4712 10001 6.151648 AGCATTGCATATTGTGGGTATATGTC 59.848 38.462 11.91 0.00 37.95 3.06
5190 10479 4.953579 AGTCCTGTTACCTTTTTCTTTGCA 59.046 37.500 0.00 0.00 0.00 4.08
5191 10480 5.041287 GTCCTGTTACCTTTTTCTTTGCAC 58.959 41.667 0.00 0.00 0.00 4.57
5361 10650 3.983410 AGTTAGTGCCCCTTGGATGATAT 59.017 43.478 0.00 0.00 0.00 1.63
5384 10673 2.040544 GGCTGTTGTCCATGACCCG 61.041 63.158 0.00 0.00 0.00 5.28
5534 10823 4.720046 TGGTAGCAGTTGGTGTTAATTGA 58.280 39.130 0.00 0.00 0.00 2.57
5628 10917 6.266558 CCCTGTAGAGTGTAGATGCTCTATTT 59.733 42.308 4.85 0.00 43.54 1.40
5800 11089 3.185797 GCCGTACTGTTCAGGTTAGTTTG 59.814 47.826 4.82 0.00 0.00 2.93
5846 11135 0.911769 TCTCCGTGCATTGATCCCTT 59.088 50.000 0.00 0.00 0.00 3.95
5887 11176 1.858091 ACAGCTGTCGAGTTGAACTG 58.142 50.000 15.25 0.00 34.62 3.16
6716 12020 5.144100 ACACCATGATAAGTTTTTGACCCA 58.856 37.500 0.00 0.00 0.00 4.51
7010 12315 2.357569 GGGCCTCTTGGATGAACAGAAT 60.358 50.000 0.84 0.00 34.57 2.40
7287 12596 9.656040 TGTAAGTATCACGGTATTTTACACATT 57.344 29.630 0.00 0.00 0.00 2.71
7349 12658 8.073467 ACTTTGAAGGGATGTAGTTTTTGAAA 57.927 30.769 0.00 0.00 0.00 2.69
7426 12737 7.006509 AGGCCTGATAACTTGCATACAAATAT 58.993 34.615 3.11 0.00 34.74 1.28
7509 12820 2.363975 GGTGGGTGCCCGAGATGTA 61.364 63.158 2.44 0.00 39.42 2.29
7718 13030 8.970859 ATATTTTCTTCGTCATTCTGGATTCT 57.029 30.769 0.00 0.00 0.00 2.40
7719 13031 6.486253 TTTTCTTCGTCATTCTGGATTCTG 57.514 37.500 0.00 0.00 0.00 3.02
7720 13032 5.405935 TTCTTCGTCATTCTGGATTCTGA 57.594 39.130 0.00 0.00 0.00 3.27
7721 13033 5.405935 TCTTCGTCATTCTGGATTCTGAA 57.594 39.130 0.00 0.00 35.75 3.02
7726 13038 4.583871 GTCATTCTGGATTCTGAACTGGT 58.416 43.478 0.00 0.00 34.46 4.00
7860 13177 8.150296 ACCATTCAATCATATGTGTCGAAGATA 58.850 33.333 1.90 0.00 40.67 1.98
7866 13183 8.590470 CAATCATATGTGTCGAAGATATACAGC 58.410 37.037 1.90 0.00 40.67 4.40
7869 13186 4.937201 TGTGTCGAAGATATACAGCCAT 57.063 40.909 0.00 0.00 40.67 4.40
7904 13221 9.354673 ACATGGACCAATTAGATATTTAACCTG 57.645 33.333 0.00 0.00 0.00 4.00
8002 13319 7.034967 TGGGTTACTAGGTTTCATTTGGTAT 57.965 36.000 0.00 0.00 0.00 2.73
8003 13320 6.887545 TGGGTTACTAGGTTTCATTTGGTATG 59.112 38.462 0.00 0.00 0.00 2.39
8014 13331 7.875554 GGTTTCATTTGGTATGTACAAACCATT 59.124 33.333 11.92 0.00 44.98 3.16
8022 13339 9.961264 TTGGTATGTACAAACCATTATCTGTAA 57.039 29.630 0.00 0.00 44.98 2.41
8054 13373 3.244976 GCACACAACACCTATTGATTGC 58.755 45.455 0.00 0.00 35.37 3.56
8079 13398 7.624974 GCGGGGTTACAAGACTTTAAACTTATC 60.625 40.741 8.56 0.00 0.00 1.75
8099 13424 7.658982 ACTTATCAATATCGAATGTCTGTGCAT 59.341 33.333 0.00 0.00 0.00 3.96
8320 13645 5.172687 TCAATGTAGCCACAAACATCCTA 57.827 39.130 0.00 0.00 38.42 2.94
8379 13704 2.198827 TGCTGATAAATATGGCGGGG 57.801 50.000 0.00 0.00 0.00 5.73
8449 13774 1.293924 CAGATCGGTGAACTCATGGC 58.706 55.000 0.00 0.00 0.00 4.40
8524 13849 3.551863 CGGGAAACATTTGCTGCAGTTAA 60.552 43.478 16.64 10.21 0.00 2.01
8614 13939 8.934697 AGCTTGTAGGATAGGTGATACATAAAA 58.065 33.333 0.00 0.00 0.00 1.52
8701 14028 5.899547 TCAGATCTAAGTTCCTCCTGCATTA 59.100 40.000 0.00 0.00 0.00 1.90
8709 14036 6.107901 AGTTCCTCCTGCATTAGTATCATC 57.892 41.667 0.00 0.00 0.00 2.92
8710 14037 5.604231 AGTTCCTCCTGCATTAGTATCATCA 59.396 40.000 0.00 0.00 0.00 3.07
8711 14038 6.271857 AGTTCCTCCTGCATTAGTATCATCAT 59.728 38.462 0.00 0.00 0.00 2.45
8835 14290 6.074729 TGTGACATTGAACTACTAAAACGTCG 60.075 38.462 0.00 0.00 0.00 5.12
8850 14305 9.937175 ACTAAAACGTCGTATATTTAGTACTCC 57.063 33.333 22.86 0.00 43.23 3.85
8851 14306 9.387123 CTAAAACGTCGTATATTTAGTACTCCC 57.613 37.037 15.32 0.00 33.02 4.30
8852 14307 7.573968 AAACGTCGTATATTTAGTACTCCCT 57.426 36.000 0.00 0.00 0.00 4.20
8853 14308 7.573968 AACGTCGTATATTTAGTACTCCCTT 57.426 36.000 0.00 0.00 0.00 3.95
8854 14309 7.195839 ACGTCGTATATTTAGTACTCCCTTC 57.804 40.000 0.00 0.00 0.00 3.46
8855 14310 6.767902 ACGTCGTATATTTAGTACTCCCTTCA 59.232 38.462 0.00 0.00 0.00 3.02
8856 14311 7.446625 ACGTCGTATATTTAGTACTCCCTTCAT 59.553 37.037 0.00 0.00 0.00 2.57
8857 14312 8.295288 CGTCGTATATTTAGTACTCCCTTCATT 58.705 37.037 0.00 0.00 0.00 2.57
8858 14313 9.623350 GTCGTATATTTAGTACTCCCTTCATTC 57.377 37.037 0.00 0.00 0.00 2.67
8859 14314 8.800332 TCGTATATTTAGTACTCCCTTCATTCC 58.200 37.037 0.00 0.00 0.00 3.01
8945 14443 6.475727 CGGAGAAATACGTGACATTGAACTAT 59.524 38.462 0.00 0.00 0.00 2.12
9052 14550 4.933400 GGGCTGTCGTAATAGTGAAGAAAA 59.067 41.667 0.00 0.00 0.00 2.29
9161 14661 3.501828 TCCAAATCGTGTGTCCAAATCAG 59.498 43.478 0.00 0.00 0.00 2.90
9190 14690 5.295540 TGTTTTCATCGTGTGTTCTCATGAA 59.704 36.000 0.00 0.00 37.00 2.57
9209 14709 7.331026 TCATGAAATCTTCGAAACTGATACCT 58.669 34.615 0.00 0.00 0.00 3.08
9210 14710 6.968131 TGAAATCTTCGAAACTGATACCTG 57.032 37.500 0.00 0.00 0.00 4.00
9211 14711 6.464222 TGAAATCTTCGAAACTGATACCTGT 58.536 36.000 0.00 0.00 0.00 4.00
9212 14712 6.590292 TGAAATCTTCGAAACTGATACCTGTC 59.410 38.462 0.00 0.00 0.00 3.51
9213 14713 4.092771 TCTTCGAAACTGATACCTGTCG 57.907 45.455 0.00 0.00 0.00 4.35
9214 14714 3.754850 TCTTCGAAACTGATACCTGTCGA 59.245 43.478 0.00 0.00 0.00 4.20
9215 14715 3.759527 TCGAAACTGATACCTGTCGAG 57.240 47.619 0.00 0.00 0.00 4.04
9216 14716 2.422479 TCGAAACTGATACCTGTCGAGG 59.578 50.000 0.00 0.00 46.21 4.63
9224 14724 4.113617 CCTGTCGAGGTTCTGGGA 57.886 61.111 0.00 0.00 34.16 4.37
9225 14725 1.592223 CCTGTCGAGGTTCTGGGAC 59.408 63.158 0.00 0.00 34.16 4.46
9226 14726 1.592223 CTGTCGAGGTTCTGGGACC 59.408 63.158 0.00 0.00 40.11 4.46
9227 14727 2.214181 CTGTCGAGGTTCTGGGACCG 62.214 65.000 0.00 0.00 44.62 4.79
9228 14728 2.678934 TCGAGGTTCTGGGACCGG 60.679 66.667 0.00 0.00 44.62 5.28
9229 14729 3.771160 CGAGGTTCTGGGACCGGG 61.771 72.222 6.32 0.00 44.62 5.73
9230 14730 3.400054 GAGGTTCTGGGACCGGGG 61.400 72.222 6.32 0.00 44.62 5.73
9233 14733 2.284847 GTTCTGGGACCGGGGGTA 60.285 66.667 6.32 0.00 35.25 3.69
9234 14734 2.284847 TTCTGGGACCGGGGGTAC 60.285 66.667 6.32 0.00 35.25 3.34
9248 14748 2.113767 GGTACCTAGACCCGTCTGC 58.886 63.158 4.06 0.00 40.71 4.26
9249 14749 1.390383 GGTACCTAGACCCGTCTGCC 61.390 65.000 4.06 0.00 40.71 4.85
9250 14750 0.395448 GTACCTAGACCCGTCTGCCT 60.395 60.000 7.63 0.00 40.71 4.75
9251 14751 1.133976 GTACCTAGACCCGTCTGCCTA 60.134 57.143 7.63 0.00 40.71 3.93
9252 14752 0.556747 ACCTAGACCCGTCTGCCTAT 59.443 55.000 7.63 0.00 40.71 2.57
9253 14753 0.962489 CCTAGACCCGTCTGCCTATG 59.038 60.000 7.63 0.00 40.71 2.23
9254 14754 0.962489 CTAGACCCGTCTGCCTATGG 59.038 60.000 7.63 0.00 40.71 2.74
9264 14764 4.489771 GCCTATGGCCCAGCGTGT 62.490 66.667 0.00 0.00 44.06 4.49
9265 14765 2.514592 CCTATGGCCCAGCGTGTG 60.515 66.667 0.00 0.00 0.00 3.82
9267 14767 4.794648 TATGGCCCAGCGTGTGGC 62.795 66.667 0.00 3.05 46.45 5.01
9276 14776 3.188786 GCGTGTGGCTCCATCGAC 61.189 66.667 16.20 4.03 39.11 4.20
9277 14777 2.880879 CGTGTGGCTCCATCGACG 60.881 66.667 9.59 7.01 0.00 5.12
9278 14778 2.509336 GTGTGGCTCCATCGACGG 60.509 66.667 0.00 0.00 0.00 4.79
9279 14779 4.451150 TGTGGCTCCATCGACGGC 62.451 66.667 0.00 0.00 0.00 5.68
9302 14802 4.484872 GCGGCCCAACCCTAGGAC 62.485 72.222 11.48 0.00 33.26 3.85
9303 14803 2.687566 CGGCCCAACCCTAGGACT 60.688 66.667 11.48 0.00 33.26 3.85
9304 14804 2.298661 CGGCCCAACCCTAGGACTT 61.299 63.158 11.48 0.00 33.26 3.01
9305 14805 1.608154 GGCCCAACCCTAGGACTTC 59.392 63.158 11.48 0.00 0.00 3.01
9306 14806 1.205460 GGCCCAACCCTAGGACTTCA 61.205 60.000 11.48 0.00 0.00 3.02
9307 14807 0.253327 GCCCAACCCTAGGACTTCAG 59.747 60.000 11.48 0.00 0.00 3.02
9308 14808 0.912486 CCCAACCCTAGGACTTCAGG 59.088 60.000 11.48 3.10 0.00 3.86
9309 14809 1.554822 CCCAACCCTAGGACTTCAGGA 60.555 57.143 11.48 0.00 33.42 3.86
9310 14810 1.834263 CCAACCCTAGGACTTCAGGAG 59.166 57.143 11.48 0.00 33.42 3.69
9311 14811 1.208293 CAACCCTAGGACTTCAGGAGC 59.792 57.143 11.48 0.00 33.42 4.70
9312 14812 0.413832 ACCCTAGGACTTCAGGAGCA 59.586 55.000 11.48 0.00 33.42 4.26
9313 14813 1.203313 ACCCTAGGACTTCAGGAGCAA 60.203 52.381 11.48 0.00 33.42 3.91
9314 14814 1.484240 CCCTAGGACTTCAGGAGCAAG 59.516 57.143 11.48 0.00 33.42 4.01
9315 14815 2.461695 CCTAGGACTTCAGGAGCAAGA 58.538 52.381 1.05 0.00 33.42 3.02
9316 14816 2.167487 CCTAGGACTTCAGGAGCAAGAC 59.833 54.545 1.05 0.00 33.42 3.01
9317 14817 0.980423 AGGACTTCAGGAGCAAGACC 59.020 55.000 0.00 0.00 36.33 3.85
9318 14818 0.035915 GGACTTCAGGAGCAAGACCC 60.036 60.000 0.00 0.00 31.68 4.46
9319 14819 0.980423 GACTTCAGGAGCAAGACCCT 59.020 55.000 0.00 0.00 0.00 4.34
9320 14820 0.980423 ACTTCAGGAGCAAGACCCTC 59.020 55.000 0.00 0.00 0.00 4.30
9321 14821 0.108424 CTTCAGGAGCAAGACCCTCG 60.108 60.000 0.00 0.00 0.00 4.63
9322 14822 2.125350 CAGGAGCAAGACCCTCGC 60.125 66.667 0.00 0.00 0.00 5.03
9323 14823 3.764466 AGGAGCAAGACCCTCGCG 61.764 66.667 0.00 0.00 0.00 5.87
9324 14824 3.760035 GGAGCAAGACCCTCGCGA 61.760 66.667 9.26 9.26 0.00 5.87
9325 14825 2.202676 GAGCAAGACCCTCGCGAG 60.203 66.667 29.06 29.06 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 6.074516 GGCCTTAAAAGTTTGAAATCGTTCAC 60.075 38.462 0.00 0.00 43.52 3.18
22 23 7.176865 AGGAGTAGGCCTTAAAAGTTTGAAATC 59.823 37.037 12.58 0.00 33.46 2.17
123 124 5.932303 CCGTATGATTAAAAGTCCATCCGAT 59.068 40.000 0.00 0.00 0.00 4.18
148 1984 2.280628 GTACGGAAGATTTGGCTCTGG 58.719 52.381 0.00 0.00 0.00 3.86
150 1986 1.906574 TGGTACGGAAGATTTGGCTCT 59.093 47.619 0.00 0.00 0.00 4.09
165 2001 2.884639 ACCAGTTGCAGAACATTGGTAC 59.115 45.455 1.72 0.00 42.00 3.34
168 2004 1.270550 GGACCAGTTGCAGAACATTGG 59.729 52.381 0.00 0.00 38.64 3.16
179 2015 4.916983 TTCTGAAACAATGGACCAGTTG 57.083 40.909 0.00 7.61 0.00 3.16
211 2047 5.582665 GGTTTGCTACAAGAGAGGATAGTTG 59.417 44.000 0.00 0.00 0.00 3.16
220 2056 4.321750 CCTTAGTCGGTTTGCTACAAGAGA 60.322 45.833 0.00 0.00 0.00 3.10
221 2057 3.927142 CCTTAGTCGGTTTGCTACAAGAG 59.073 47.826 0.00 0.00 0.00 2.85
222 2058 3.306502 CCCTTAGTCGGTTTGCTACAAGA 60.307 47.826 0.00 0.00 0.00 3.02
228 2064 1.207329 CTAGCCCTTAGTCGGTTTGCT 59.793 52.381 0.00 0.00 0.00 3.91
255 2107 7.994425 TTTTCTTGCAACATAGGATGTCTTA 57.006 32.000 0.00 0.00 44.07 2.10
262 2114 5.902613 CAGGATTTTCTTGCAACATAGGA 57.097 39.130 0.00 0.00 0.00 2.94
309 2162 4.077300 ACATGGATCGTGTTGCAGATAT 57.923 40.909 0.00 0.00 28.11 1.63
310 2163 3.541996 ACATGGATCGTGTTGCAGATA 57.458 42.857 0.00 0.00 28.11 1.98
311 2164 2.408271 ACATGGATCGTGTTGCAGAT 57.592 45.000 0.00 0.00 28.11 2.90
364 2218 5.517322 AGGTTATGTTGCGGTTTTTGTTA 57.483 34.783 0.00 0.00 0.00 2.41
365 2219 4.394439 AGGTTATGTTGCGGTTTTTGTT 57.606 36.364 0.00 0.00 0.00 2.83
367 2221 4.568760 ACAAAGGTTATGTTGCGGTTTTTG 59.431 37.500 0.00 0.00 0.00 2.44
408 2262 5.929697 TCTACTTTGCAACAGATGTCTTG 57.070 39.130 0.00 0.00 0.00 3.02
433 2319 2.005971 ACCGATAAGCCAAACGTCTC 57.994 50.000 0.00 0.00 0.00 3.36
437 2323 1.533731 ACACAACCGATAAGCCAAACG 59.466 47.619 0.00 0.00 0.00 3.60
484 2370 2.580867 CAGCTACGCGTCAGCCTC 60.581 66.667 26.22 9.61 39.99 4.70
490 2376 2.638330 TTATGGGGCAGCTACGCGTC 62.638 60.000 18.63 1.13 0.00 5.19
491 2377 2.040009 ATTATGGGGCAGCTACGCGT 62.040 55.000 19.17 19.17 0.00 6.01
492 2378 0.037697 TATTATGGGGCAGCTACGCG 60.038 55.000 3.53 3.53 0.00 6.01
493 2379 2.403252 ATATTATGGGGCAGCTACGC 57.597 50.000 0.00 0.00 0.00 4.42
494 2380 5.339008 TCTTATATTATGGGGCAGCTACG 57.661 43.478 0.00 0.00 0.00 3.51
515 2420 7.381678 AGAGTGTTTACAGTGATCTAAACGTTC 59.618 37.037 0.00 4.23 35.76 3.95
518 2423 7.639162 AAGAGTGTTTACAGTGATCTAAACG 57.361 36.000 0.00 0.00 35.76 3.60
549 2454 6.248569 AGTGTGTTAATTATCCCTCCGAAT 57.751 37.500 0.00 0.00 0.00 3.34
552 2457 5.424757 TCAAGTGTGTTAATTATCCCTCCG 58.575 41.667 0.00 0.00 0.00 4.63
553 2458 7.696992 TTTCAAGTGTGTTAATTATCCCTCC 57.303 36.000 0.00 0.00 0.00 4.30
555 2460 9.975218 AGTATTTCAAGTGTGTTAATTATCCCT 57.025 29.630 0.00 0.00 0.00 4.20
561 2466 9.554724 CGCATTAGTATTTCAAGTGTGTTAATT 57.445 29.630 0.00 0.00 0.00 1.40
563 2468 7.018826 GCGCATTAGTATTTCAAGTGTGTTAA 58.981 34.615 0.30 0.00 0.00 2.01
565 2470 5.390613 GCGCATTAGTATTTCAAGTGTGTT 58.609 37.500 0.30 0.00 0.00 3.32
566 2471 4.142687 GGCGCATTAGTATTTCAAGTGTGT 60.143 41.667 10.83 0.00 0.00 3.72
567 2472 4.342772 GGCGCATTAGTATTTCAAGTGTG 58.657 43.478 10.83 0.00 0.00 3.82
568 2473 3.377172 GGGCGCATTAGTATTTCAAGTGT 59.623 43.478 10.83 0.00 0.00 3.55
569 2474 3.376859 TGGGCGCATTAGTATTTCAAGTG 59.623 43.478 10.83 0.00 0.00 3.16
570 2475 3.616219 TGGGCGCATTAGTATTTCAAGT 58.384 40.909 10.83 0.00 0.00 3.16
571 2476 4.498009 CCTTGGGCGCATTAGTATTTCAAG 60.498 45.833 10.83 6.53 0.00 3.02
572 2477 3.380004 CCTTGGGCGCATTAGTATTTCAA 59.620 43.478 10.83 0.00 0.00 2.69
574 2479 2.293399 CCCTTGGGCGCATTAGTATTTC 59.707 50.000 10.83 0.00 0.00 2.17
575 2480 2.306847 CCCTTGGGCGCATTAGTATTT 58.693 47.619 10.83 0.00 0.00 1.40
576 2481 1.981256 CCCTTGGGCGCATTAGTATT 58.019 50.000 10.83 0.00 0.00 1.89
577 2482 0.537371 GCCCTTGGGCGCATTAGTAT 60.537 55.000 15.52 0.00 0.00 2.12
578 2483 1.153046 GCCCTTGGGCGCATTAGTA 60.153 57.895 15.52 0.00 0.00 1.82
579 2484 2.440247 GCCCTTGGGCGCATTAGT 60.440 61.111 15.52 0.00 0.00 2.24
580 2485 1.799258 GATGCCCTTGGGCGCATTAG 61.799 60.000 23.81 0.00 45.52 1.73
581 2486 1.827789 GATGCCCTTGGGCGCATTA 60.828 57.895 23.81 8.07 45.52 1.90
582 2487 3.149648 GATGCCCTTGGGCGCATT 61.150 61.111 23.81 10.06 45.52 3.56
607 2512 9.463443 GCATTAGAAGTATTTCAAGTGTGTTTT 57.537 29.630 0.44 0.00 35.70 2.43
608 2513 8.082242 GGCATTAGAAGTATTTCAAGTGTGTTT 58.918 33.333 0.44 0.00 35.70 2.83
609 2514 7.448469 AGGCATTAGAAGTATTTCAAGTGTGTT 59.552 33.333 0.44 0.00 35.70 3.32
610 2515 6.942576 AGGCATTAGAAGTATTTCAAGTGTGT 59.057 34.615 0.44 0.00 35.70 3.72
611 2516 7.383102 AGGCATTAGAAGTATTTCAAGTGTG 57.617 36.000 0.44 0.00 35.70 3.82
612 2517 8.409358 AAAGGCATTAGAAGTATTTCAAGTGT 57.591 30.769 0.44 0.00 35.70 3.55
613 2518 9.994432 CTAAAGGCATTAGAAGTATTTCAAGTG 57.006 33.333 3.46 0.00 43.16 3.16
614 2519 9.740710 ACTAAAGGCATTAGAAGTATTTCAAGT 57.259 29.630 15.75 0.00 43.16 3.16
615 2520 9.994432 CACTAAAGGCATTAGAAGTATTTCAAG 57.006 33.333 15.75 0.00 43.16 3.02
631 2536 7.361371 CCACACGAATAAAATACACTAAAGGCA 60.361 37.037 0.00 0.00 0.00 4.75
687 2592 0.472352 ACGGTAGAGGTTGTTGGGGA 60.472 55.000 0.00 0.00 0.00 4.81
800 2705 2.494918 GAGATGCGTAGGTGCGGT 59.505 61.111 0.00 0.00 37.81 5.68
844 2749 0.604578 CTCGTTTACTGGTTCCGGGA 59.395 55.000 0.00 0.00 0.00 5.14
1068 2974 2.288825 ACGCCAGTTGAATCGAGAAAGA 60.289 45.455 0.00 0.00 0.00 2.52
1082 2988 1.738099 GCGATCAGAACACGCCAGT 60.738 57.895 0.00 0.00 45.35 4.00
1279 3185 0.866061 CATCACGTCGCGTCTAAGGG 60.866 60.000 5.77 0.00 38.32 3.95
1300 3206 0.953471 CAACGGATTCACGCCCAAGA 60.953 55.000 0.00 0.00 37.37 3.02
1371 3277 4.324991 GAACACCGGACCGCCCTT 62.325 66.667 9.46 0.00 0.00 3.95
1403 3310 7.860872 ACAACCGAAAATGTATTCAAGAGTTTC 59.139 33.333 0.00 0.00 0.00 2.78
1490 3397 1.135575 GCAGCAGTATGTTCAGTTGGC 60.136 52.381 0.00 0.00 39.31 4.52
1515 3422 1.209019 CTGGCAGACTGGAACTAGCAT 59.791 52.381 9.42 0.00 0.00 3.79
1579 3486 2.994995 TGGCGGTGAGACGGTGAT 60.995 61.111 0.00 0.00 0.00 3.06
1701 3608 2.275318 AGACAATGCGAAAGAGCTAGC 58.725 47.619 6.62 6.62 38.13 3.42
1717 3624 1.872388 CGAGAGATAGAGGCGAGACA 58.128 55.000 0.00 0.00 0.00 3.41
1734 3641 0.034198 TGAAAGTTGATGACCGGCGA 59.966 50.000 9.30 0.00 0.00 5.54
1838 3745 6.024552 TGCTTGGATGTCCATTTTAGTTTC 57.975 37.500 1.98 0.00 46.97 2.78
1848 3755 3.703556 TGAAAAACTTGCTTGGATGTCCA 59.296 39.130 0.00 0.00 45.94 4.02
1870 3777 3.534554 CAAAGTTTTTCCAAGCAAGGCT 58.465 40.909 0.00 0.00 42.56 4.58
1957 3864 1.002624 AAATGGACACACGGGCGAT 60.003 52.632 0.00 0.00 0.00 4.58
1994 3901 0.110373 GAACACCACCAATTCGACGC 60.110 55.000 0.00 0.00 0.00 5.19
2047 3957 1.537202 CCAGACTAAGCCAAGCACAAC 59.463 52.381 0.00 0.00 0.00 3.32
2073 3983 5.065731 CAGCAGAATCTACCAACCAATTCTC 59.934 44.000 0.00 0.00 36.56 2.87
2088 3998 2.873649 GCCCTAGCATACCAGCAGAATC 60.874 54.545 0.00 0.00 39.53 2.52
2125 4035 7.371936 CAGTTCCACGGTTTAATTTTAATCCA 58.628 34.615 9.64 0.00 33.90 3.41
2128 4038 6.750148 TGCAGTTCCACGGTTTAATTTTAAT 58.250 32.000 0.00 0.00 0.00 1.40
2152 4062 3.584848 AGGGAAATGAACTACAGCACTCT 59.415 43.478 0.00 0.00 0.00 3.24
2155 4065 4.278419 ACAAAGGGAAATGAACTACAGCAC 59.722 41.667 0.00 0.00 0.00 4.40
2162 4072 5.509670 GCAAGCTAACAAAGGGAAATGAACT 60.510 40.000 0.00 0.00 0.00 3.01
2301 4257 0.673333 TTCATGCTACTGTGGCACGG 60.673 55.000 24.47 24.47 42.69 4.94
2302 4258 1.328680 GATTCATGCTACTGTGGCACG 59.671 52.381 21.26 13.67 42.69 5.34
2379 4335 6.512342 TGAAGGAAAACGAAAAAGGTACAA 57.488 33.333 0.00 0.00 0.00 2.41
2380 4336 6.319152 TCATGAAGGAAAACGAAAAAGGTACA 59.681 34.615 0.00 0.00 0.00 2.90
2424 4380 1.600638 CTCCAGTGCAGCATCAGGA 59.399 57.895 0.00 5.81 0.00 3.86
2427 4383 0.835276 ATAGCTCCAGTGCAGCATCA 59.165 50.000 9.15 0.00 39.56 3.07
2546 4507 8.747538 ATTGGGTCTTAACAGGTATTATTGAC 57.252 34.615 0.00 0.00 0.00 3.18
2554 4515 5.163077 TGTCCAAATTGGGTCTTAACAGGTA 60.163 40.000 12.67 0.00 38.32 3.08
2567 4528 4.062293 TCGAGTAACTGTGTCCAAATTGG 58.938 43.478 5.48 5.48 39.43 3.16
2661 4622 6.655003 TGACATAAGACATTTGAAGTTCTCCC 59.345 38.462 4.17 0.00 0.00 4.30
2769 4730 8.243961 TCCTGTCAAATTCTTTAACAAATGGA 57.756 30.769 0.00 0.00 0.00 3.41
2821 4782 2.746362 GGAGAACTTCCTGACATGCTTG 59.254 50.000 0.00 0.00 43.16 4.01
2856 4817 7.386059 CCCATAATTAATGAGGGTTAAATGCC 58.614 38.462 2.82 0.00 37.86 4.40
2857 4818 7.386059 CCCCATAATTAATGAGGGTTAAATGC 58.614 38.462 15.28 0.00 39.48 3.56
2858 4819 7.016072 TGCCCCATAATTAATGAGGGTTAAATG 59.984 37.037 15.28 4.43 43.18 2.32
2859 4820 7.079048 TGCCCCATAATTAATGAGGGTTAAAT 58.921 34.615 15.28 0.00 43.18 1.40
2860 4821 6.444704 TGCCCCATAATTAATGAGGGTTAAA 58.555 36.000 15.28 0.91 43.18 1.52
2861 4822 6.031964 TGCCCCATAATTAATGAGGGTTAA 57.968 37.500 15.28 2.71 43.18 2.01
2862 4823 5.671463 TGCCCCATAATTAATGAGGGTTA 57.329 39.130 15.28 5.11 43.18 2.85
2863 4824 4.551215 TGCCCCATAATTAATGAGGGTT 57.449 40.909 15.28 0.00 43.18 4.11
2864 4825 4.765195 ATGCCCCATAATTAATGAGGGT 57.235 40.909 15.28 0.00 43.18 4.34
2873 4834 7.125507 TCAATGAAACTTGTATGCCCCATAATT 59.874 33.333 0.00 0.00 0.00 1.40
2918 4879 3.828875 ACCTTCTGTAGCTCCTTATGC 57.171 47.619 0.00 0.00 0.00 3.14
2977 4938 5.088739 CAGTAAATGAAAGTTCCATCGTGC 58.911 41.667 0.00 0.00 0.00 5.34
3074 5035 9.095065 ACGATTATCCATAAGAGTTGTTAACAC 57.905 33.333 8.07 4.01 0.00 3.32
3243 5205 6.700520 CACTACCGAGATTTAACTATTCACCC 59.299 42.308 0.00 0.00 0.00 4.61
3324 5286 8.874816 GTTTTGAATTTTAGTAGCTCGATCTCT 58.125 33.333 0.00 0.00 0.00 3.10
3339 5301 3.807071 GCCGACCACATGTTTTGAATTTT 59.193 39.130 0.00 0.00 0.00 1.82
3340 5302 3.069443 AGCCGACCACATGTTTTGAATTT 59.931 39.130 0.00 0.00 0.00 1.82
3344 5306 0.950836 CAGCCGACCACATGTTTTGA 59.049 50.000 0.00 0.00 0.00 2.69
3423 5385 8.806429 TCTTTATGATGTCCTGCAAGAATAAA 57.194 30.769 0.00 0.00 34.07 1.40
3450 5412 5.475220 TGCAAATATCCTCCAAACTCGAAAA 59.525 36.000 0.00 0.00 0.00 2.29
3511 5473 9.315525 GAAATAATACAGAAGGTAGAGTCCAAC 57.684 37.037 0.00 0.00 34.92 3.77
3671 5633 6.968131 TTATGGACTTGAGTTCTCAAATCG 57.032 37.500 14.76 7.47 27.80 3.34
3674 5636 8.519799 AAAGTTTATGGACTTGAGTTCTCAAA 57.480 30.769 14.76 2.70 39.68 2.69
3744 5706 4.825085 GTGTTTCACTTGGGTCAATTAGGA 59.175 41.667 0.00 0.00 0.00 2.94
3867 5829 7.977789 TGTAACTTATTGAACTGAATCTGCA 57.022 32.000 0.00 0.00 0.00 4.41
3940 5902 8.526147 ACAGCAGATTGAAAAATATAAGCACTT 58.474 29.630 0.00 0.00 0.00 3.16
4053 6015 5.323371 AGAGATGTTAGTCTCAGCAGTTC 57.677 43.478 6.67 0.00 45.62 3.01
4105 6067 3.254166 GCCCATAGGTCATTAGCAATGTG 59.746 47.826 8.19 1.37 39.87 3.21
4198 6162 4.545823 TCCTTTTTGAGCAAGTACAACG 57.454 40.909 0.00 0.00 0.00 4.10
4259 6223 8.603181 ACAAATGCAAATGTTTTAAGTCACTTC 58.397 29.630 0.00 0.00 0.00 3.01
4458 9747 1.874562 GCAGAGTGCAGCCAAAGAG 59.125 57.895 0.00 0.00 44.26 2.85
4588 9877 4.514441 CCTAGCACCAGCATTTCTATTGAG 59.486 45.833 0.00 0.00 45.49 3.02
4643 9932 2.615447 AGCAATGCTCATGATTACACGG 59.385 45.455 0.00 0.00 30.62 4.94
4675 9964 2.438411 TGCAATGCTCATGATCACACA 58.562 42.857 6.82 0.00 0.00 3.72
4703 9992 5.299782 AGAGAACTCAACGAGGACATATACC 59.700 44.000 4.64 0.00 33.35 2.73
4705 9994 5.886474 ACAGAGAACTCAACGAGGACATATA 59.114 40.000 4.64 0.00 33.35 0.86
4712 10001 4.082190 TGGATAACAGAGAACTCAACGAGG 60.082 45.833 4.64 0.00 33.35 4.63
5143 10432 1.001378 CAGAAGTGCAAAACGGGAAGG 60.001 52.381 0.00 0.00 0.00 3.46
5144 10433 1.676006 ACAGAAGTGCAAAACGGGAAG 59.324 47.619 0.00 0.00 0.00 3.46
5145 10434 1.403679 CACAGAAGTGCAAAACGGGAA 59.596 47.619 0.00 0.00 39.21 3.97
5146 10435 1.021202 CACAGAAGTGCAAAACGGGA 58.979 50.000 0.00 0.00 39.21 5.14
5190 10479 2.111384 AGGTCAATAGCAGTCCATCGT 58.889 47.619 0.00 0.00 0.00 3.73
5191 10480 2.898729 AGGTCAATAGCAGTCCATCG 57.101 50.000 0.00 0.00 0.00 3.84
5361 10650 0.770499 TCATGGACAACAGCCAAGGA 59.230 50.000 0.00 0.00 39.21 3.36
5371 10660 0.608035 GAAAGCCGGGTCATGGACAA 60.608 55.000 6.62 0.00 33.68 3.18
5384 10673 9.933723 ATTGCATATCTAATAATTTGGAAAGCC 57.066 29.630 0.00 0.00 0.00 4.35
5631 10920 8.691797 AGGAACTTAACAAGAAAACAAAGCATA 58.308 29.630 0.00 0.00 27.25 3.14
5632 10921 7.555965 AGGAACTTAACAAGAAAACAAAGCAT 58.444 30.769 0.00 0.00 27.25 3.79
5800 11089 6.158598 TCAAGCTTCCAAAATAGCATTTCAC 58.841 36.000 0.00 0.00 39.85 3.18
5846 11135 6.741109 TGTACTTCACGTGAACAGAATCTAA 58.259 36.000 26.53 2.91 0.00 2.10
5887 11176 8.413229 TGCTAATATTTAACCAGGCAATTTCTC 58.587 33.333 0.00 0.00 0.00 2.87
6502 11794 7.169308 GCGCTGCGTATATTACCATCTATTTAT 59.831 37.037 24.04 0.00 0.00 1.40
6716 12020 0.849417 GCAAATCCCTCTCCCCTCAT 59.151 55.000 0.00 0.00 0.00 2.90
6726 12031 4.016572 AGGGGTATGTTTTAGCAAATCCCT 60.017 41.667 0.00 0.00 36.33 4.20
7074 12380 6.795114 CACGAAGTTTTTGCGTAACTTATCAT 59.205 34.615 9.69 0.00 43.76 2.45
7287 12596 9.616156 TTTTGTACACAAGTTATAAGGTCTTCA 57.384 29.630 0.00 0.00 37.15 3.02
7426 12737 3.907474 TCCTCAGGACAAAGTTACCATGA 59.093 43.478 0.00 0.00 0.00 3.07
7509 12820 2.168666 GAGAAACCCGCTTCTCCCGT 62.169 60.000 2.73 0.00 43.73 5.28
7717 13029 4.898829 TGAACAATCAACACCAGTTCAG 57.101 40.909 0.00 0.00 42.35 3.02
7719 13031 5.591099 ACAATGAACAATCAACACCAGTTC 58.409 37.500 0.00 0.00 39.49 3.01
7720 13032 5.596836 ACAATGAACAATCAACACCAGTT 57.403 34.783 0.00 0.00 39.49 3.16
7721 13033 5.596836 AACAATGAACAATCAACACCAGT 57.403 34.783 0.00 0.00 39.49 4.00
7726 13038 7.914871 CACTGTCTAAACAATGAACAATCAACA 59.085 33.333 0.00 0.00 34.57 3.33
7860 13177 4.400251 CCATGTTCACTTCAATGGCTGTAT 59.600 41.667 0.00 0.00 0.00 2.29
7866 13183 3.156293 TGGTCCATGTTCACTTCAATGG 58.844 45.455 0.00 0.00 0.00 3.16
7869 13186 6.303054 TCTAATTGGTCCATGTTCACTTCAA 58.697 36.000 0.00 0.00 0.00 2.69
7904 13221 7.467403 GCAAGTCTGCTATTTATACTTGGGTTC 60.467 40.741 13.56 0.00 44.50 3.62
8030 13347 3.483808 TCAATAGGTGTTGTGTGCAGA 57.516 42.857 0.00 0.00 0.00 4.26
8031 13348 4.478699 CAATCAATAGGTGTTGTGTGCAG 58.521 43.478 0.00 0.00 0.00 4.41
8032 13349 3.305267 GCAATCAATAGGTGTTGTGTGCA 60.305 43.478 10.13 0.00 38.55 4.57
8033 13350 3.244976 GCAATCAATAGGTGTTGTGTGC 58.755 45.455 0.00 0.00 34.99 4.57
8034 13351 3.491356 CGCAATCAATAGGTGTTGTGTG 58.509 45.455 0.00 0.00 30.59 3.82
8035 13352 2.487762 CCGCAATCAATAGGTGTTGTGT 59.512 45.455 0.00 0.00 31.96 3.72
8043 13362 2.925724 TGTAACCCCGCAATCAATAGG 58.074 47.619 0.00 0.00 0.00 2.57
8046 13365 2.752903 GTCTTGTAACCCCGCAATCAAT 59.247 45.455 0.00 0.00 0.00 2.57
8054 13373 7.388500 TGATAAGTTTAAAGTCTTGTAACCCCG 59.612 37.037 0.00 0.00 0.00 5.73
8079 13398 6.412943 GTGAAATGCACAGACATTCGATATTG 59.587 38.462 0.00 0.00 46.91 1.90
8099 13424 6.203723 CAGGTTGTTGGTTTTCTTTTGTGAAA 59.796 34.615 0.00 0.00 34.55 2.69
8110 13435 5.806654 AATAGCATCAGGTTGTTGGTTTT 57.193 34.783 0.00 0.00 31.28 2.43
8112 13437 5.106317 CGTAAATAGCATCAGGTTGTTGGTT 60.106 40.000 0.00 0.00 31.28 3.67
8114 13439 4.730613 GCGTAAATAGCATCAGGTTGTTGG 60.731 45.833 0.00 0.00 34.19 3.77
8278 13603 2.689553 TATCATTTCTGGCTCGCACA 57.310 45.000 0.00 0.00 0.00 4.57
8320 13645 1.802960 CAATGAGACTGCGCTTCAAGT 59.197 47.619 9.73 2.65 0.00 3.16
8379 13704 4.150897 TGGCCAGATATAACCAGTTCAC 57.849 45.455 0.00 0.00 0.00 3.18
8449 13774 3.694072 TGTTCAACTTCTCCAAACCACTG 59.306 43.478 0.00 0.00 0.00 3.66
8832 14287 9.623350 GAATGAAGGGAGTACTAAATATACGAC 57.377 37.037 0.00 0.00 0.00 4.34
8835 14290 8.583296 ACGGAATGAAGGGAGTACTAAATATAC 58.417 37.037 0.00 0.00 0.00 1.47
8844 14299 3.067883 GGAGTACGGAATGAAGGGAGTAC 59.932 52.174 0.00 0.00 35.88 2.73
8845 14300 3.294214 GGAGTACGGAATGAAGGGAGTA 58.706 50.000 0.00 0.00 0.00 2.59
8846 14301 2.108970 GGAGTACGGAATGAAGGGAGT 58.891 52.381 0.00 0.00 0.00 3.85
8847 14302 1.413077 GGGAGTACGGAATGAAGGGAG 59.587 57.143 0.00 0.00 0.00 4.30
8848 14303 1.007963 AGGGAGTACGGAATGAAGGGA 59.992 52.381 0.00 0.00 0.00 4.20
8849 14304 1.497161 AGGGAGTACGGAATGAAGGG 58.503 55.000 0.00 0.00 0.00 3.95
8850 14305 2.500098 TGAAGGGAGTACGGAATGAAGG 59.500 50.000 0.00 0.00 0.00 3.46
8851 14306 3.887621 TGAAGGGAGTACGGAATGAAG 57.112 47.619 0.00 0.00 0.00 3.02
8852 14307 4.383770 GGAATGAAGGGAGTACGGAATGAA 60.384 45.833 0.00 0.00 0.00 2.57
8853 14308 3.134081 GGAATGAAGGGAGTACGGAATGA 59.866 47.826 0.00 0.00 0.00 2.57
8854 14309 3.134804 AGGAATGAAGGGAGTACGGAATG 59.865 47.826 0.00 0.00 0.00 2.67
8855 14310 3.385115 AGGAATGAAGGGAGTACGGAAT 58.615 45.455 0.00 0.00 0.00 3.01
8856 14311 2.829023 AGGAATGAAGGGAGTACGGAA 58.171 47.619 0.00 0.00 0.00 4.30
8857 14312 2.544844 AGGAATGAAGGGAGTACGGA 57.455 50.000 0.00 0.00 0.00 4.69
8858 14313 4.748277 TTTAGGAATGAAGGGAGTACGG 57.252 45.455 0.00 0.00 0.00 4.02
8859 14314 7.385205 CACATATTTAGGAATGAAGGGAGTACG 59.615 40.741 0.00 0.00 0.00 3.67
8926 14381 9.749490 CGTTTTAATAGTTCAATGTCACGTATT 57.251 29.630 0.00 0.00 0.00 1.89
8930 14428 7.285069 TGACGTTTTAATAGTTCAATGTCACG 58.715 34.615 6.35 0.00 39.25 4.35
8964 14462 9.387257 GAAAAATACTCCCTCCGTTTCTAAATA 57.613 33.333 0.00 0.00 0.00 1.40
8965 14463 7.886446 TGAAAAATACTCCCTCCGTTTCTAAAT 59.114 33.333 0.00 0.00 0.00 1.40
8966 14464 7.225725 TGAAAAATACTCCCTCCGTTTCTAAA 58.774 34.615 0.00 0.00 0.00 1.85
8967 14465 6.771573 TGAAAAATACTCCCTCCGTTTCTAA 58.228 36.000 0.00 0.00 0.00 2.10
8968 14466 6.363167 TGAAAAATACTCCCTCCGTTTCTA 57.637 37.500 0.00 0.00 0.00 2.10
8969 14467 5.237236 TGAAAAATACTCCCTCCGTTTCT 57.763 39.130 0.00 0.00 0.00 2.52
9075 14573 4.028490 ATGCGCCAACTTCCGGGA 62.028 61.111 4.18 0.00 0.00 5.14
9130 14629 2.228582 CACACGATTTGGAGGAAATGCA 59.771 45.455 0.00 0.00 34.18 3.96
9131 14630 2.228822 ACACACGATTTGGAGGAAATGC 59.771 45.455 0.00 0.00 34.18 3.56
9132 14631 3.119849 GGACACACGATTTGGAGGAAATG 60.120 47.826 0.00 0.00 34.18 2.32
9133 14632 3.081804 GGACACACGATTTGGAGGAAAT 58.918 45.455 0.00 0.00 36.94 2.17
9134 14633 2.158740 TGGACACACGATTTGGAGGAAA 60.159 45.455 0.00 0.00 0.00 3.13
9145 14645 5.487433 ACATATTCTGATTTGGACACACGA 58.513 37.500 0.00 0.00 0.00 4.35
9161 14661 7.518161 TGAGAACACACGATGAAAACATATTC 58.482 34.615 0.00 0.00 0.00 1.75
9190 14690 5.103000 CGACAGGTATCAGTTTCGAAGATT 58.897 41.667 0.00 0.00 35.04 2.40
9209 14709 2.273179 CGGTCCCAGAACCTCGACA 61.273 63.158 0.00 0.00 37.15 4.35
9210 14710 2.572284 CGGTCCCAGAACCTCGAC 59.428 66.667 0.00 0.00 37.15 4.20
9211 14711 2.678934 CCGGTCCCAGAACCTCGA 60.679 66.667 0.00 0.00 37.15 4.04
9212 14712 3.771160 CCCGGTCCCAGAACCTCG 61.771 72.222 0.00 0.00 37.15 4.63
9213 14713 3.400054 CCCCGGTCCCAGAACCTC 61.400 72.222 0.00 0.00 37.15 3.85
9215 14715 3.929723 TACCCCCGGTCCCAGAACC 62.930 68.421 0.00 0.00 37.09 3.62
9216 14716 2.284847 TACCCCCGGTCCCAGAAC 60.285 66.667 0.00 0.00 37.09 3.01
9217 14717 2.284847 GTACCCCCGGTCCCAGAA 60.285 66.667 0.00 0.00 37.09 3.02
9218 14718 4.403502 GGTACCCCCGGTCCCAGA 62.404 72.222 0.00 0.00 37.09 3.86
9219 14719 2.941563 CTAGGTACCCCCGGTCCCAG 62.942 70.000 8.74 0.00 33.83 4.45
9220 14720 2.951785 TAGGTACCCCCGGTCCCA 60.952 66.667 8.74 0.00 33.83 4.37
9221 14721 2.123121 CTAGGTACCCCCGGTCCC 60.123 72.222 8.74 0.00 37.09 4.46
9222 14722 1.456518 GTCTAGGTACCCCCGGTCC 60.457 68.421 8.74 0.00 37.09 4.46
9223 14723 1.456518 GGTCTAGGTACCCCCGGTC 60.457 68.421 8.74 0.00 37.09 4.79
9224 14724 2.692374 GGTCTAGGTACCCCCGGT 59.308 66.667 8.74 0.00 40.16 5.28
9230 14730 1.390383 GGCAGACGGGTCTAGGTACC 61.390 65.000 2.73 2.73 37.98 3.34
9231 14731 0.395448 AGGCAGACGGGTCTAGGTAC 60.395 60.000 0.21 0.00 37.98 3.34
9232 14732 1.216064 TAGGCAGACGGGTCTAGGTA 58.784 55.000 0.21 0.00 37.98 3.08
9233 14733 0.556747 ATAGGCAGACGGGTCTAGGT 59.443 55.000 0.21 0.00 37.98 3.08
9234 14734 0.962489 CATAGGCAGACGGGTCTAGG 59.038 60.000 0.21 0.00 37.98 3.02
9235 14735 0.962489 CCATAGGCAGACGGGTCTAG 59.038 60.000 0.21 0.00 37.98 2.43
9236 14736 3.127099 CCATAGGCAGACGGGTCTA 57.873 57.895 0.21 0.00 37.98 2.59
9237 14737 3.956377 CCATAGGCAGACGGGTCT 58.044 61.111 0.00 0.00 41.37 3.85
9248 14748 2.514592 CACACGCTGGGCCATAGG 60.515 66.667 6.72 1.26 0.00 2.57
9249 14749 2.514592 CCACACGCTGGGCCATAG 60.515 66.667 6.72 6.78 36.18 2.23
9250 14750 4.794648 GCCACACGCTGGGCCATA 62.795 66.667 6.72 0.00 44.53 2.74
9259 14759 3.188786 GTCGATGGAGCCACACGC 61.189 66.667 11.32 5.41 37.98 5.34
9260 14760 2.880879 CGTCGATGGAGCCACACG 60.881 66.667 10.31 10.31 0.00 4.49
9261 14761 2.509336 CCGTCGATGGAGCCACAC 60.509 66.667 19.48 0.00 0.00 3.82
9262 14762 4.451150 GCCGTCGATGGAGCCACA 62.451 66.667 28.06 0.00 0.00 4.17
9285 14785 4.484872 GTCCTAGGGTTGGGCCGC 62.485 72.222 9.46 0.00 38.44 6.53
9286 14786 2.253403 GAAGTCCTAGGGTTGGGCCG 62.253 65.000 9.46 0.00 38.44 6.13
9287 14787 1.205460 TGAAGTCCTAGGGTTGGGCC 61.205 60.000 9.46 0.00 0.00 5.80
9288 14788 0.253327 CTGAAGTCCTAGGGTTGGGC 59.747 60.000 9.46 0.00 0.00 5.36
9289 14789 0.912486 CCTGAAGTCCTAGGGTTGGG 59.088 60.000 9.46 4.36 0.00 4.12
9290 14790 1.834263 CTCCTGAAGTCCTAGGGTTGG 59.166 57.143 9.46 3.61 34.76 3.77
9291 14791 1.208293 GCTCCTGAAGTCCTAGGGTTG 59.792 57.143 9.46 0.00 34.76 3.77
9292 14792 1.203313 TGCTCCTGAAGTCCTAGGGTT 60.203 52.381 9.46 2.67 34.76 4.11
9293 14793 0.413832 TGCTCCTGAAGTCCTAGGGT 59.586 55.000 9.46 0.00 34.76 4.34
9294 14794 1.484240 CTTGCTCCTGAAGTCCTAGGG 59.516 57.143 9.46 0.00 34.76 3.53
9295 14795 2.167487 GTCTTGCTCCTGAAGTCCTAGG 59.833 54.545 0.82 0.82 35.34 3.02
9296 14796 2.167487 GGTCTTGCTCCTGAAGTCCTAG 59.833 54.545 0.00 0.00 0.00 3.02
9297 14797 2.180276 GGTCTTGCTCCTGAAGTCCTA 58.820 52.381 0.00 0.00 0.00 2.94
9298 14798 0.980423 GGTCTTGCTCCTGAAGTCCT 59.020 55.000 0.00 0.00 0.00 3.85
9299 14799 0.035915 GGGTCTTGCTCCTGAAGTCC 60.036 60.000 0.00 0.00 0.00 3.85
9300 14800 0.980423 AGGGTCTTGCTCCTGAAGTC 59.020 55.000 0.00 0.00 31.11 3.01
9301 14801 0.980423 GAGGGTCTTGCTCCTGAAGT 59.020 55.000 0.00 0.00 32.74 3.01
9302 14802 0.108424 CGAGGGTCTTGCTCCTGAAG 60.108 60.000 0.00 0.00 32.74 3.02
9303 14803 1.975327 CGAGGGTCTTGCTCCTGAA 59.025 57.895 0.00 0.00 32.74 3.02
9304 14804 2.650116 GCGAGGGTCTTGCTCCTGA 61.650 63.158 0.20 0.00 37.84 3.86
9305 14805 2.125350 GCGAGGGTCTTGCTCCTG 60.125 66.667 0.20 0.00 37.84 3.86
9306 14806 3.764466 CGCGAGGGTCTTGCTCCT 61.764 66.667 0.00 0.00 38.64 3.69
9307 14807 3.708220 CTCGCGAGGGTCTTGCTCC 62.708 68.421 28.40 0.00 38.64 4.70
9308 14808 2.202676 CTCGCGAGGGTCTTGCTC 60.203 66.667 28.40 0.00 38.64 4.26
9309 14809 3.764466 CCTCGCGAGGGTCTTGCT 61.764 66.667 41.47 0.00 44.87 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.