Multiple sequence alignment - TraesCS3B01G213000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G213000 chr3B 100.000 3595 0 0 1 3595 252671818 252668224 0.000000e+00 6639.0
1 TraesCS3B01G213000 chr3B 84.910 782 82 18 1050 1800 252796843 252796067 0.000000e+00 758.0
2 TraesCS3B01G213000 chr3B 76.620 432 48 25 1889 2298 252795919 252795519 4.740000e-44 189.0
3 TraesCS3B01G213000 chr3A 94.493 1489 50 9 866 2332 212534325 212532847 0.000000e+00 2266.0
4 TraesCS3B01G213000 chr3A 81.524 1299 152 49 1052 2295 212703914 212702649 0.000000e+00 989.0
5 TraesCS3B01G213000 chr3A 84.930 929 91 22 2669 3563 730993193 730994106 0.000000e+00 894.0
6 TraesCS3B01G213000 chr3A 94.208 259 14 1 2342 2600 212531187 212530930 9.360000e-106 394.0
7 TraesCS3B01G213000 chr3A 92.803 264 16 2 2337 2600 212529748 212529488 2.620000e-101 379.0
8 TraesCS3B01G213000 chr3A 93.204 206 14 0 2395 2600 212532587 212532382 1.620000e-78 303.0
9 TraesCS3B01G213000 chr3A 94.737 38 2 0 863 900 212704014 212703977 3.880000e-05 60.2
10 TraesCS3B01G213000 chr3D 95.163 1013 36 7 869 1880 173819490 173818490 0.000000e+00 1587.0
11 TraesCS3B01G213000 chr3D 95.105 715 20 7 1880 2592 173818227 173817526 0.000000e+00 1112.0
12 TraesCS3B01G213000 chr3D 85.882 765 75 15 1052 1793 174049397 174048643 0.000000e+00 784.0
13 TraesCS3B01G213000 chr3D 85.687 531 59 12 5 531 567669351 567669868 8.780000e-151 544.0
14 TraesCS3B01G213000 chr3D 89.602 327 22 11 2601 2921 339285366 339285686 4.320000e-109 405.0
15 TraesCS3B01G213000 chr3D 81.308 428 43 16 1889 2295 174046489 174046078 2.690000e-81 313.0
16 TraesCS3B01G213000 chr3D 94.737 38 2 0 863 900 174049535 174049498 3.880000e-05 60.2
17 TraesCS3B01G213000 chr7B 93.836 941 37 11 2663 3595 617508227 617509154 0.000000e+00 1397.0
18 TraesCS3B01G213000 chr7B 84.762 525 68 10 7 527 411505946 411506462 1.910000e-142 516.0
19 TraesCS3B01G213000 chr7B 93.284 134 9 0 3444 3577 595646353 595646220 7.870000e-47 198.0
20 TraesCS3B01G213000 chr7B 94.595 111 5 1 726 835 715998498 715998388 1.720000e-38 171.0
21 TraesCS3B01G213000 chr6B 93.262 935 41 15 2669 3595 702665395 702664475 0.000000e+00 1358.0
22 TraesCS3B01G213000 chr6B 82.745 255 25 5 581 834 252100013 252100249 3.640000e-50 209.0
23 TraesCS3B01G213000 chr5B 91.245 1028 44 25 2601 3595 387985973 387984959 0.000000e+00 1358.0
24 TraesCS3B01G213000 chr1B 89.842 571 43 9 2694 3259 564888593 564888033 0.000000e+00 719.0
25 TraesCS3B01G213000 chr1B 92.054 516 25 5 3093 3594 67663907 67663394 0.000000e+00 712.0
26 TraesCS3B01G213000 chr1B 86.687 323 28 12 2601 2914 683034903 683035219 9.560000e-91 344.0
27 TraesCS3B01G213000 chr1B 95.735 211 9 0 3385 3595 564887930 564887720 1.240000e-89 340.0
28 TraesCS3B01G213000 chr6D 87.643 526 57 7 8 533 362778705 362779222 3.970000e-169 604.0
29 TraesCS3B01G213000 chr6D 88.273 469 51 4 1 469 158820267 158819803 3.130000e-155 558.0
30 TraesCS3B01G213000 chr6D 86.364 352 24 12 3255 3595 2916504 2916842 2.640000e-96 363.0
31 TraesCS3B01G213000 chr1D 86.339 549 60 14 1 540 447464600 447465142 5.170000e-163 584.0
32 TraesCS3B01G213000 chr1D 87.212 477 56 5 1 475 303000702 303000229 4.080000e-149 538.0
33 TraesCS3B01G213000 chr2D 89.079 467 47 4 6 470 471643314 471642850 8.650000e-161 577.0
34 TraesCS3B01G213000 chr7D 85.880 517 58 7 7 523 319782361 319781860 1.470000e-148 536.0
35 TraesCS3B01G213000 chr2B 85.468 523 63 9 1 523 796634141 796633632 1.900000e-147 532.0
36 TraesCS3B01G213000 chr2B 90.572 297 22 6 2601 2895 73316189 73315897 4.350000e-104 388.0
37 TraesCS3B01G213000 chr2B 87.898 314 28 8 2601 2909 137192691 137192999 9.490000e-96 361.0
38 TraesCS3B01G213000 chr7A 90.411 292 18 9 2601 2887 65577647 65577361 3.390000e-100 375.0
39 TraesCS3B01G213000 chr7A 82.121 330 29 11 3021 3328 695648929 695649250 4.610000e-64 255.0
40 TraesCS3B01G213000 chr1A 91.837 49 3 1 3514 3561 58337658 58337610 2.320000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G213000 chr3B 252668224 252671818 3594 True 6639.000000 6639 100.0000 1 3595 1 chr3B.!!$R1 3594
1 TraesCS3B01G213000 chr3B 252795519 252796843 1324 True 473.500000 758 80.7650 1050 2298 2 chr3B.!!$R2 1248
2 TraesCS3B01G213000 chr3A 730993193 730994106 913 False 894.000000 894 84.9300 2669 3563 1 chr3A.!!$F1 894
3 TraesCS3B01G213000 chr3A 212529488 212534325 4837 True 835.500000 2266 93.6770 866 2600 4 chr3A.!!$R1 1734
4 TraesCS3B01G213000 chr3A 212702649 212704014 1365 True 524.600000 989 88.1305 863 2295 2 chr3A.!!$R2 1432
5 TraesCS3B01G213000 chr3D 173817526 173819490 1964 True 1349.500000 1587 95.1340 869 2592 2 chr3D.!!$R1 1723
6 TraesCS3B01G213000 chr3D 567669351 567669868 517 False 544.000000 544 85.6870 5 531 1 chr3D.!!$F2 526
7 TraesCS3B01G213000 chr3D 174046078 174049535 3457 True 385.733333 784 87.3090 863 2295 3 chr3D.!!$R2 1432
8 TraesCS3B01G213000 chr7B 617508227 617509154 927 False 1397.000000 1397 93.8360 2663 3595 1 chr7B.!!$F2 932
9 TraesCS3B01G213000 chr7B 411505946 411506462 516 False 516.000000 516 84.7620 7 527 1 chr7B.!!$F1 520
10 TraesCS3B01G213000 chr6B 702664475 702665395 920 True 1358.000000 1358 93.2620 2669 3595 1 chr6B.!!$R1 926
11 TraesCS3B01G213000 chr5B 387984959 387985973 1014 True 1358.000000 1358 91.2450 2601 3595 1 chr5B.!!$R1 994
12 TraesCS3B01G213000 chr1B 67663394 67663907 513 True 712.000000 712 92.0540 3093 3594 1 chr1B.!!$R1 501
13 TraesCS3B01G213000 chr1B 564887720 564888593 873 True 529.500000 719 92.7885 2694 3595 2 chr1B.!!$R2 901
14 TraesCS3B01G213000 chr6D 362778705 362779222 517 False 604.000000 604 87.6430 8 533 1 chr6D.!!$F2 525
15 TraesCS3B01G213000 chr1D 447464600 447465142 542 False 584.000000 584 86.3390 1 540 1 chr1D.!!$F1 539
16 TraesCS3B01G213000 chr7D 319781860 319782361 501 True 536.000000 536 85.8800 7 523 1 chr7D.!!$R1 516
17 TraesCS3B01G213000 chr2B 796633632 796634141 509 True 532.000000 532 85.4680 1 523 1 chr2B.!!$R2 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
601 609 0.035458 GAGCCGGATCCCCTAACATG 59.965 60.0 9.02 0.0 0.0 3.21 F
804 812 0.041238 TACTGTAGCTGCCCCTGACT 59.959 55.0 0.00 0.0 0.0 3.41 F
806 814 0.107945 CTGTAGCTGCCCCTGACTTC 60.108 60.0 0.00 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1624 1676 0.407139 ATGAACAGCTTCCCCTGCTT 59.593 50.0 0.00 0.0 38.92 3.91 R
2461 6562 2.572095 AATCCGCACTCGCCGATTCA 62.572 55.0 0.00 0.0 40.61 2.57 R
3012 7140 0.669077 ACTCTATCGGATCGCGCTTT 59.331 50.0 5.56 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 156 0.902984 TCCTCACCCGCTTTAGCAGA 60.903 55.000 2.29 0.00 42.21 4.26
158 160 2.362397 CTCACCCGCTTTAGCAGATAGA 59.638 50.000 2.29 0.00 42.21 1.98
184 186 3.307506 CATCTCCTCCTCCACTTGATCT 58.692 50.000 0.00 0.00 0.00 2.75
230 232 2.365635 CCCACCGACCAGATCCCT 60.366 66.667 0.00 0.00 0.00 4.20
266 268 4.362677 TGAAGATAGCCAAAGGTAGAGGT 58.637 43.478 0.00 0.00 0.00 3.85
277 279 1.183549 GGTAGAGGTGGTCACATCGT 58.816 55.000 9.61 2.66 45.74 3.73
309 311 2.192861 CCATGGCCACACACACGTT 61.193 57.895 8.16 0.00 0.00 3.99
315 317 1.450491 CCACACACACGTTGTCCCA 60.450 57.895 0.00 0.00 35.67 4.37
331 333 4.404654 CAAGGCGCCCGCTCAAAC 62.405 66.667 26.15 0.00 41.60 2.93
344 346 1.878102 GCTCAAACTCCACCGTCACAT 60.878 52.381 0.00 0.00 0.00 3.21
396 398 3.933722 CCGCCGCCATCATCTCCT 61.934 66.667 0.00 0.00 0.00 3.69
405 407 1.455773 ATCATCTCCTCGCACGGGA 60.456 57.895 0.00 0.00 0.00 5.14
454 456 4.423209 GGGGAGGCAGAGGGGAGT 62.423 72.222 0.00 0.00 0.00 3.85
464 468 4.787280 AGGGGAGTGGAGGCGGAG 62.787 72.222 0.00 0.00 0.00 4.63
503 507 1.715785 GGAGAGATCTGGAGGGAAGG 58.284 60.000 0.00 0.00 0.00 3.46
504 508 1.715785 GAGAGATCTGGAGGGAAGGG 58.284 60.000 0.00 0.00 0.00 3.95
542 550 4.077180 GACGGGGAGAGGGGGTCT 62.077 72.222 0.00 0.00 38.71 3.85
543 551 2.619484 ACGGGGAGAGGGGGTCTA 60.619 66.667 0.00 0.00 34.71 2.59
544 552 2.019272 ACGGGGAGAGGGGGTCTAT 61.019 63.158 0.00 0.00 34.71 1.98
545 553 0.703758 ACGGGGAGAGGGGGTCTATA 60.704 60.000 0.00 0.00 34.71 1.31
546 554 0.039911 CGGGGAGAGGGGGTCTATAG 59.960 65.000 0.00 0.00 34.71 1.31
547 555 1.469082 GGGGAGAGGGGGTCTATAGA 58.531 60.000 0.00 0.00 34.71 1.98
548 556 1.793902 GGGGAGAGGGGGTCTATAGAA 59.206 57.143 3.40 0.00 34.71 2.10
549 557 2.181642 GGGGAGAGGGGGTCTATAGAAA 59.818 54.545 3.40 0.00 34.71 2.52
550 558 3.376103 GGGGAGAGGGGGTCTATAGAAAA 60.376 52.174 3.40 0.00 34.71 2.29
551 559 3.904965 GGGAGAGGGGGTCTATAGAAAAG 59.095 52.174 3.40 0.00 34.71 2.27
552 560 4.388804 GGGAGAGGGGGTCTATAGAAAAGA 60.389 50.000 3.40 0.00 34.71 2.52
553 561 5.217400 GGAGAGGGGGTCTATAGAAAAGAA 58.783 45.833 3.40 0.00 34.71 2.52
554 562 5.666265 GGAGAGGGGGTCTATAGAAAAGAAA 59.334 44.000 3.40 0.00 34.71 2.52
555 563 6.330514 GGAGAGGGGGTCTATAGAAAAGAAAT 59.669 42.308 3.40 0.00 34.71 2.17
556 564 7.142995 AGAGGGGGTCTATAGAAAAGAAATG 57.857 40.000 3.40 0.00 31.71 2.32
557 565 6.909158 AGAGGGGGTCTATAGAAAAGAAATGA 59.091 38.462 3.40 0.00 31.71 2.57
558 566 7.071824 AGAGGGGGTCTATAGAAAAGAAATGAG 59.928 40.741 3.40 0.00 31.71 2.90
559 567 6.909158 AGGGGGTCTATAGAAAAGAAATGAGA 59.091 38.462 3.40 0.00 0.00 3.27
560 568 7.406151 AGGGGGTCTATAGAAAAGAAATGAGAA 59.594 37.037 3.40 0.00 0.00 2.87
561 569 8.053355 GGGGGTCTATAGAAAAGAAATGAGAAA 58.947 37.037 3.40 0.00 0.00 2.52
562 570 9.462606 GGGGTCTATAGAAAAGAAATGAGAAAA 57.537 33.333 3.40 0.00 0.00 2.29
568 576 6.944234 AGAAAAGAAATGAGAAAACCTCGT 57.056 33.333 0.00 0.00 44.92 4.18
569 577 6.960468 AGAAAAGAAATGAGAAAACCTCGTC 58.040 36.000 0.00 0.00 44.92 4.20
570 578 6.768381 AGAAAAGAAATGAGAAAACCTCGTCT 59.232 34.615 0.00 0.00 44.92 4.18
571 579 6.944234 AAAGAAATGAGAAAACCTCGTCTT 57.056 33.333 0.00 0.00 44.92 3.01
572 580 6.546972 AAGAAATGAGAAAACCTCGTCTTC 57.453 37.500 0.00 0.00 44.92 2.87
573 581 5.859495 AGAAATGAGAAAACCTCGTCTTCT 58.141 37.500 0.00 0.00 44.92 2.85
574 582 6.292150 AGAAATGAGAAAACCTCGTCTTCTT 58.708 36.000 0.00 0.00 44.92 2.52
575 583 5.931441 AATGAGAAAACCTCGTCTTCTTG 57.069 39.130 0.00 0.00 44.92 3.02
576 584 4.402056 TGAGAAAACCTCGTCTTCTTGT 57.598 40.909 0.00 0.00 44.92 3.16
577 585 4.766375 TGAGAAAACCTCGTCTTCTTGTT 58.234 39.130 0.00 0.00 44.92 2.83
578 586 5.183228 TGAGAAAACCTCGTCTTCTTGTTT 58.817 37.500 0.00 0.00 44.92 2.83
579 587 5.293569 TGAGAAAACCTCGTCTTCTTGTTTC 59.706 40.000 0.00 0.00 44.92 2.78
580 588 4.270325 AGAAAACCTCGTCTTCTTGTTTCG 59.730 41.667 0.00 0.00 0.00 3.46
581 589 2.150397 ACCTCGTCTTCTTGTTTCGG 57.850 50.000 0.00 0.00 0.00 4.30
582 590 1.270147 ACCTCGTCTTCTTGTTTCGGG 60.270 52.381 0.00 0.00 0.00 5.14
583 591 1.000506 CCTCGTCTTCTTGTTTCGGGA 59.999 52.381 0.00 0.00 0.00 5.14
584 592 2.329379 CTCGTCTTCTTGTTTCGGGAG 58.671 52.381 0.00 0.00 0.00 4.30
585 593 0.790814 CGTCTTCTTGTTTCGGGAGC 59.209 55.000 0.00 0.00 0.00 4.70
586 594 1.157585 GTCTTCTTGTTTCGGGAGCC 58.842 55.000 0.00 0.00 0.00 4.70
598 606 3.149038 GGAGCCGGATCCCCTAAC 58.851 66.667 28.96 0.78 32.79 2.34
599 607 1.764854 GGAGCCGGATCCCCTAACA 60.765 63.158 28.96 0.00 32.79 2.41
600 608 1.128188 GGAGCCGGATCCCCTAACAT 61.128 60.000 28.96 0.00 32.79 2.71
601 609 0.035458 GAGCCGGATCCCCTAACATG 59.965 60.000 9.02 0.00 0.00 3.21
602 610 1.600916 GCCGGATCCCCTAACATGC 60.601 63.158 5.05 0.00 0.00 4.06
603 611 1.836391 CCGGATCCCCTAACATGCA 59.164 57.895 6.06 0.00 0.00 3.96
604 612 0.535102 CCGGATCCCCTAACATGCAC 60.535 60.000 6.06 0.00 0.00 4.57
605 613 0.180171 CGGATCCCCTAACATGCACA 59.820 55.000 6.06 0.00 0.00 4.57
606 614 1.408127 CGGATCCCCTAACATGCACAA 60.408 52.381 6.06 0.00 0.00 3.33
607 615 2.301346 GGATCCCCTAACATGCACAAG 58.699 52.381 0.00 0.00 0.00 3.16
608 616 2.301346 GATCCCCTAACATGCACAAGG 58.699 52.381 0.00 0.00 0.00 3.61
609 617 1.367346 TCCCCTAACATGCACAAGGA 58.633 50.000 6.97 0.00 0.00 3.36
610 618 1.707989 TCCCCTAACATGCACAAGGAA 59.292 47.619 6.97 0.00 0.00 3.36
611 619 2.109128 TCCCCTAACATGCACAAGGAAA 59.891 45.455 6.97 0.00 0.00 3.13
612 620 2.493278 CCCCTAACATGCACAAGGAAAG 59.507 50.000 6.97 0.00 0.00 2.62
613 621 3.157087 CCCTAACATGCACAAGGAAAGT 58.843 45.455 6.97 0.00 0.00 2.66
614 622 3.191371 CCCTAACATGCACAAGGAAAGTC 59.809 47.826 6.97 0.00 0.00 3.01
615 623 3.820467 CCTAACATGCACAAGGAAAGTCA 59.180 43.478 0.00 0.00 0.00 3.41
616 624 4.460382 CCTAACATGCACAAGGAAAGTCAT 59.540 41.667 0.00 0.00 0.00 3.06
617 625 3.928727 ACATGCACAAGGAAAGTCATG 57.071 42.857 0.00 0.00 37.78 3.07
618 626 2.559668 ACATGCACAAGGAAAGTCATGG 59.440 45.455 0.00 0.00 36.54 3.66
619 627 2.655090 TGCACAAGGAAAGTCATGGA 57.345 45.000 0.00 0.00 0.00 3.41
620 628 2.507484 TGCACAAGGAAAGTCATGGAG 58.493 47.619 0.00 0.00 0.00 3.86
621 629 1.200948 GCACAAGGAAAGTCATGGAGC 59.799 52.381 0.00 0.00 0.00 4.70
622 630 2.787994 CACAAGGAAAGTCATGGAGCT 58.212 47.619 0.00 0.00 0.00 4.09
623 631 3.869912 GCACAAGGAAAGTCATGGAGCTA 60.870 47.826 0.00 0.00 0.00 3.32
624 632 3.686726 CACAAGGAAAGTCATGGAGCTAC 59.313 47.826 0.00 0.00 0.00 3.58
625 633 3.327757 ACAAGGAAAGTCATGGAGCTACA 59.672 43.478 0.00 0.00 0.00 2.74
626 634 3.902881 AGGAAAGTCATGGAGCTACAG 57.097 47.619 4.19 0.00 0.00 2.74
627 635 3.177228 AGGAAAGTCATGGAGCTACAGT 58.823 45.455 4.19 0.00 0.00 3.55
628 636 4.353777 AGGAAAGTCATGGAGCTACAGTA 58.646 43.478 4.19 0.00 0.00 2.74
629 637 4.777896 AGGAAAGTCATGGAGCTACAGTAA 59.222 41.667 4.19 0.00 0.00 2.24
630 638 5.248477 AGGAAAGTCATGGAGCTACAGTAAA 59.752 40.000 4.19 0.00 0.00 2.01
631 639 5.351740 GGAAAGTCATGGAGCTACAGTAAAC 59.648 44.000 4.19 0.00 0.00 2.01
632 640 5.746990 AAGTCATGGAGCTACAGTAAACT 57.253 39.130 4.19 2.05 0.00 2.66
633 641 6.852420 AAGTCATGGAGCTACAGTAAACTA 57.148 37.500 4.19 0.00 0.00 2.24
634 642 7.425224 AAGTCATGGAGCTACAGTAAACTAT 57.575 36.000 4.19 0.00 0.00 2.12
635 643 6.810911 AGTCATGGAGCTACAGTAAACTATG 58.189 40.000 4.19 0.00 0.00 2.23
636 644 6.381420 AGTCATGGAGCTACAGTAAACTATGT 59.619 38.462 4.19 0.00 0.00 2.29
637 645 6.477033 GTCATGGAGCTACAGTAAACTATGTG 59.523 42.308 4.19 0.00 0.00 3.21
638 646 5.995565 TGGAGCTACAGTAAACTATGTGT 57.004 39.130 0.00 0.00 0.00 3.72
639 647 7.340999 TCATGGAGCTACAGTAAACTATGTGTA 59.659 37.037 4.19 0.00 0.00 2.90
640 648 7.655521 TGGAGCTACAGTAAACTATGTGTAT 57.344 36.000 0.00 0.00 0.00 2.29
641 649 8.756486 TGGAGCTACAGTAAACTATGTGTATA 57.244 34.615 0.00 0.00 0.00 1.47
642 650 9.192642 TGGAGCTACAGTAAACTATGTGTATAA 57.807 33.333 0.00 0.00 0.00 0.98
655 663 9.802039 AACTATGTGTATAAAACAAAGAAGGGA 57.198 29.630 0.00 0.00 40.63 4.20
656 664 9.975218 ACTATGTGTATAAAACAAAGAAGGGAT 57.025 29.630 0.00 0.00 40.63 3.85
658 666 8.650143 ATGTGTATAAAACAAAGAAGGGATGT 57.350 30.769 0.00 0.00 40.63 3.06
659 667 8.106247 TGTGTATAAAACAAAGAAGGGATGTC 57.894 34.615 0.00 0.00 40.63 3.06
660 668 7.094975 TGTGTATAAAACAAAGAAGGGATGTCG 60.095 37.037 0.00 0.00 40.63 4.35
661 669 5.897377 ATAAAACAAAGAAGGGATGTCGG 57.103 39.130 0.00 0.00 0.00 4.79
662 670 2.200373 AACAAAGAAGGGATGTCGGG 57.800 50.000 0.00 0.00 0.00 5.14
663 671 0.328258 ACAAAGAAGGGATGTCGGGG 59.672 55.000 0.00 0.00 0.00 5.73
664 672 1.032114 CAAAGAAGGGATGTCGGGGC 61.032 60.000 0.00 0.00 0.00 5.80
665 673 1.208165 AAAGAAGGGATGTCGGGGCT 61.208 55.000 0.00 0.00 0.00 5.19
666 674 0.326238 AAGAAGGGATGTCGGGGCTA 60.326 55.000 0.00 0.00 0.00 3.93
667 675 0.760945 AGAAGGGATGTCGGGGCTAG 60.761 60.000 0.00 0.00 0.00 3.42
668 676 2.384653 GAAGGGATGTCGGGGCTAGC 62.385 65.000 6.04 6.04 0.00 3.42
669 677 3.942439 GGGATGTCGGGGCTAGCC 61.942 72.222 26.55 26.55 0.00 3.93
680 688 4.096003 GCTAGCCCTGGCCGTGAA 62.096 66.667 2.29 0.00 43.17 3.18
681 689 2.911143 CTAGCCCTGGCCGTGAAT 59.089 61.111 4.13 0.00 43.17 2.57
682 690 1.227674 CTAGCCCTGGCCGTGAATC 60.228 63.158 4.13 0.00 43.17 2.52
683 691 1.971505 CTAGCCCTGGCCGTGAATCA 61.972 60.000 4.13 0.00 43.17 2.57
684 692 2.252072 TAGCCCTGGCCGTGAATCAC 62.252 60.000 4.13 2.75 43.17 3.06
685 693 2.671070 CCCTGGCCGTGAATCACT 59.329 61.111 11.92 0.00 31.34 3.41
686 694 1.746615 CCCTGGCCGTGAATCACTG 60.747 63.158 11.92 6.12 31.34 3.66
687 695 1.003355 CCTGGCCGTGAATCACTGT 60.003 57.895 11.92 0.00 31.34 3.55
688 696 0.249120 CCTGGCCGTGAATCACTGTA 59.751 55.000 11.92 0.00 31.34 2.74
689 697 1.645034 CTGGCCGTGAATCACTGTAG 58.355 55.000 11.92 4.65 31.34 2.74
690 698 1.204704 CTGGCCGTGAATCACTGTAGA 59.795 52.381 11.92 0.00 31.34 2.59
691 699 1.831106 TGGCCGTGAATCACTGTAGAT 59.169 47.619 11.92 0.00 31.34 1.98
692 700 2.159099 TGGCCGTGAATCACTGTAGATC 60.159 50.000 11.92 0.00 31.34 2.75
693 701 2.101582 GGCCGTGAATCACTGTAGATCT 59.898 50.000 11.92 0.00 31.34 2.75
694 702 3.119291 GCCGTGAATCACTGTAGATCTG 58.881 50.000 11.92 0.00 31.34 2.90
695 703 3.711086 CCGTGAATCACTGTAGATCTGG 58.289 50.000 11.92 0.00 31.34 3.86
696 704 3.119291 CGTGAATCACTGTAGATCTGGC 58.881 50.000 11.92 0.00 31.34 4.85
697 705 3.429410 CGTGAATCACTGTAGATCTGGCA 60.429 47.826 11.92 3.57 31.34 4.92
698 706 3.868077 GTGAATCACTGTAGATCTGGCAC 59.132 47.826 5.18 0.00 0.00 5.01
699 707 3.771479 TGAATCACTGTAGATCTGGCACT 59.229 43.478 5.18 0.00 0.00 4.40
700 708 3.815856 ATCACTGTAGATCTGGCACTG 57.184 47.619 5.18 2.51 0.00 3.66
701 709 2.529632 TCACTGTAGATCTGGCACTGT 58.470 47.619 5.18 3.17 0.00 3.55
702 710 2.899900 TCACTGTAGATCTGGCACTGTT 59.100 45.455 5.18 0.00 0.00 3.16
703 711 3.324846 TCACTGTAGATCTGGCACTGTTT 59.675 43.478 5.18 0.00 0.00 2.83
704 712 4.526650 TCACTGTAGATCTGGCACTGTTTA 59.473 41.667 5.18 0.00 0.00 2.01
705 713 5.187772 TCACTGTAGATCTGGCACTGTTTAT 59.812 40.000 5.18 0.00 0.00 1.40
706 714 5.292834 CACTGTAGATCTGGCACTGTTTATG 59.707 44.000 5.18 0.00 0.00 1.90
707 715 5.187772 ACTGTAGATCTGGCACTGTTTATGA 59.812 40.000 5.18 0.00 0.00 2.15
708 716 6.048732 TGTAGATCTGGCACTGTTTATGAA 57.951 37.500 5.18 0.00 0.00 2.57
709 717 6.653020 TGTAGATCTGGCACTGTTTATGAAT 58.347 36.000 5.18 0.00 0.00 2.57
710 718 7.112122 TGTAGATCTGGCACTGTTTATGAATT 58.888 34.615 5.18 0.00 0.00 2.17
711 719 8.264347 TGTAGATCTGGCACTGTTTATGAATTA 58.736 33.333 5.18 0.00 0.00 1.40
712 720 7.559590 AGATCTGGCACTGTTTATGAATTAC 57.440 36.000 0.00 0.00 0.00 1.89
713 721 7.341805 AGATCTGGCACTGTTTATGAATTACT 58.658 34.615 0.00 0.00 0.00 2.24
714 722 6.741992 TCTGGCACTGTTTATGAATTACTG 57.258 37.500 0.00 0.00 0.00 2.74
715 723 6.237901 TCTGGCACTGTTTATGAATTACTGT 58.762 36.000 0.00 0.00 0.00 3.55
716 724 6.149308 TCTGGCACTGTTTATGAATTACTGTG 59.851 38.462 9.67 9.67 41.66 3.66
717 725 5.182950 TGGCACTGTTTATGAATTACTGTGG 59.817 40.000 13.77 1.56 40.15 4.17
718 726 5.414454 GGCACTGTTTATGAATTACTGTGGA 59.586 40.000 13.77 0.00 40.15 4.02
719 727 6.095440 GGCACTGTTTATGAATTACTGTGGAT 59.905 38.462 13.77 0.00 40.15 3.41
720 728 7.282224 GGCACTGTTTATGAATTACTGTGGATA 59.718 37.037 13.77 0.00 40.15 2.59
721 729 8.673711 GCACTGTTTATGAATTACTGTGGATAA 58.326 33.333 13.77 0.00 40.15 1.75
739 747 9.349713 TGTGGATAATTACTGTTTATGAATCCC 57.650 33.333 0.00 0.00 31.35 3.85
740 748 9.574516 GTGGATAATTACTGTTTATGAATCCCT 57.425 33.333 0.00 0.00 31.35 4.20
741 749 9.573166 TGGATAATTACTGTTTATGAATCCCTG 57.427 33.333 0.00 0.00 31.35 4.45
742 750 9.014297 GGATAATTACTGTTTATGAATCCCTGG 57.986 37.037 0.00 0.00 0.00 4.45
743 751 9.574516 GATAATTACTGTTTATGAATCCCTGGT 57.425 33.333 0.00 0.00 0.00 4.00
744 752 9.936329 ATAATTACTGTTTATGAATCCCTGGTT 57.064 29.630 0.00 0.00 0.00 3.67
746 754 8.980481 ATTACTGTTTATGAATCCCTGGTTAG 57.020 34.615 0.00 0.00 0.00 2.34
747 755 6.636454 ACTGTTTATGAATCCCTGGTTAGA 57.364 37.500 0.00 0.00 0.00 2.10
748 756 7.213178 ACTGTTTATGAATCCCTGGTTAGAT 57.787 36.000 0.00 0.00 0.00 1.98
749 757 7.283329 ACTGTTTATGAATCCCTGGTTAGATC 58.717 38.462 0.00 0.00 0.00 2.75
750 758 7.092444 ACTGTTTATGAATCCCTGGTTAGATCA 60.092 37.037 0.00 0.00 0.00 2.92
751 759 7.815383 TGTTTATGAATCCCTGGTTAGATCAT 58.185 34.615 0.00 0.00 0.00 2.45
752 760 7.720957 TGTTTATGAATCCCTGGTTAGATCATG 59.279 37.037 0.00 0.00 0.00 3.07
753 761 4.712051 TGAATCCCTGGTTAGATCATGG 57.288 45.455 0.00 0.00 0.00 3.66
754 762 4.047166 TGAATCCCTGGTTAGATCATGGT 58.953 43.478 0.00 0.00 0.00 3.55
755 763 4.478317 TGAATCCCTGGTTAGATCATGGTT 59.522 41.667 0.00 0.00 0.00 3.67
756 764 5.044179 TGAATCCCTGGTTAGATCATGGTTT 60.044 40.000 0.00 0.00 0.00 3.27
757 765 6.159575 TGAATCCCTGGTTAGATCATGGTTTA 59.840 38.462 0.00 0.00 0.00 2.01
758 766 5.630415 TCCCTGGTTAGATCATGGTTTAG 57.370 43.478 0.00 0.00 0.00 1.85
759 767 4.412199 TCCCTGGTTAGATCATGGTTTAGG 59.588 45.833 0.00 0.00 0.00 2.69
760 768 4.412199 CCCTGGTTAGATCATGGTTTAGGA 59.588 45.833 0.00 0.00 0.00 2.94
761 769 5.104109 CCCTGGTTAGATCATGGTTTAGGAA 60.104 44.000 0.00 0.00 0.00 3.36
762 770 6.423182 CCTGGTTAGATCATGGTTTAGGAAA 58.577 40.000 0.00 0.00 0.00 3.13
763 771 6.889722 CCTGGTTAGATCATGGTTTAGGAAAA 59.110 38.462 0.00 0.00 0.00 2.29
764 772 7.561356 CCTGGTTAGATCATGGTTTAGGAAAAT 59.439 37.037 0.00 0.00 0.00 1.82
765 773 8.519799 TGGTTAGATCATGGTTTAGGAAAATC 57.480 34.615 0.00 0.00 0.00 2.17
766 774 7.559897 TGGTTAGATCATGGTTTAGGAAAATCC 59.440 37.037 0.00 0.00 36.58 3.01
767 775 7.255139 GGTTAGATCATGGTTTAGGAAAATCCG 60.255 40.741 0.00 0.00 42.75 4.18
768 776 5.133221 AGATCATGGTTTAGGAAAATCCGG 58.867 41.667 0.00 0.00 42.75 5.14
769 777 3.626930 TCATGGTTTAGGAAAATCCGGG 58.373 45.455 0.00 0.00 42.75 5.73
770 778 2.517998 TGGTTTAGGAAAATCCGGGG 57.482 50.000 0.00 0.00 42.75 5.73
771 779 1.994047 TGGTTTAGGAAAATCCGGGGA 59.006 47.619 0.00 0.00 42.75 4.81
772 780 2.379226 TGGTTTAGGAAAATCCGGGGAA 59.621 45.455 0.00 0.00 42.75 3.97
773 781 3.021695 GGTTTAGGAAAATCCGGGGAAG 58.978 50.000 0.00 0.00 42.75 3.46
774 782 3.021695 GTTTAGGAAAATCCGGGGAAGG 58.978 50.000 0.00 0.00 42.75 3.46
775 783 2.273717 TAGGAAAATCCGGGGAAGGA 57.726 50.000 0.00 0.00 42.75 3.36
776 784 1.378732 AGGAAAATCCGGGGAAGGAA 58.621 50.000 0.00 0.00 44.50 3.36
777 785 1.930204 AGGAAAATCCGGGGAAGGAAT 59.070 47.619 0.00 0.00 44.50 3.01
778 786 2.031870 GGAAAATCCGGGGAAGGAATG 58.968 52.381 0.00 0.00 44.50 2.67
779 787 2.623239 GGAAAATCCGGGGAAGGAATGT 60.623 50.000 0.00 0.00 44.50 2.71
780 788 2.437085 AAATCCGGGGAAGGAATGTC 57.563 50.000 0.00 0.00 44.50 3.06
781 789 1.295020 AATCCGGGGAAGGAATGTCA 58.705 50.000 0.00 0.00 44.50 3.58
782 790 0.839946 ATCCGGGGAAGGAATGTCAG 59.160 55.000 0.00 0.00 44.50 3.51
783 791 1.224592 CCGGGGAAGGAATGTCAGG 59.775 63.158 0.00 0.00 0.00 3.86
784 792 1.224592 CGGGGAAGGAATGTCAGGG 59.775 63.158 0.00 0.00 0.00 4.45
785 793 1.562672 CGGGGAAGGAATGTCAGGGT 61.563 60.000 0.00 0.00 0.00 4.34
786 794 1.591768 GGGGAAGGAATGTCAGGGTA 58.408 55.000 0.00 0.00 0.00 3.69
787 795 1.212195 GGGGAAGGAATGTCAGGGTAC 59.788 57.143 0.00 0.00 0.00 3.34
788 796 2.197465 GGGAAGGAATGTCAGGGTACT 58.803 52.381 0.00 0.00 0.00 2.73
789 797 2.092914 GGGAAGGAATGTCAGGGTACTG 60.093 54.545 0.00 0.00 46.30 2.74
790 798 2.572104 GGAAGGAATGTCAGGGTACTGT 59.428 50.000 0.00 0.00 45.14 3.55
791 799 3.773119 GGAAGGAATGTCAGGGTACTGTA 59.227 47.826 0.00 0.00 45.14 2.74
792 800 4.141914 GGAAGGAATGTCAGGGTACTGTAG 60.142 50.000 0.00 0.00 45.14 2.74
793 801 2.766828 AGGAATGTCAGGGTACTGTAGC 59.233 50.000 8.46 8.46 45.14 3.58
794 802 2.766828 GGAATGTCAGGGTACTGTAGCT 59.233 50.000 15.74 0.00 45.14 3.32
795 803 3.430929 GGAATGTCAGGGTACTGTAGCTG 60.431 52.174 15.74 11.88 45.14 4.24
796 804 0.895530 TGTCAGGGTACTGTAGCTGC 59.104 55.000 15.74 0.00 45.14 5.25
797 805 0.175989 GTCAGGGTACTGTAGCTGCC 59.824 60.000 15.74 0.70 45.14 4.85
798 806 0.976073 TCAGGGTACTGTAGCTGCCC 60.976 60.000 15.74 9.60 45.14 5.36
799 807 1.689582 AGGGTACTGTAGCTGCCCC 60.690 63.158 15.74 9.26 40.14 5.80
800 808 1.689582 GGGTACTGTAGCTGCCCCT 60.690 63.158 15.74 0.00 33.40 4.79
801 809 1.522569 GGTACTGTAGCTGCCCCTG 59.477 63.158 9.64 0.00 0.00 4.45
802 810 0.976073 GGTACTGTAGCTGCCCCTGA 60.976 60.000 9.64 0.00 0.00 3.86
803 811 0.175989 GTACTGTAGCTGCCCCTGAC 59.824 60.000 0.00 0.00 0.00 3.51
804 812 0.041238 TACTGTAGCTGCCCCTGACT 59.959 55.000 0.00 0.00 0.00 3.41
805 813 0.838122 ACTGTAGCTGCCCCTGACTT 60.838 55.000 0.00 0.00 0.00 3.01
806 814 0.107945 CTGTAGCTGCCCCTGACTTC 60.108 60.000 0.00 0.00 0.00 3.01
807 815 1.222113 GTAGCTGCCCCTGACTTCC 59.778 63.158 0.00 0.00 0.00 3.46
808 816 1.995626 TAGCTGCCCCTGACTTCCC 60.996 63.158 0.00 0.00 0.00 3.97
809 817 2.477190 TAGCTGCCCCTGACTTCCCT 62.477 60.000 0.00 0.00 0.00 4.20
810 818 2.993853 CTGCCCCTGACTTCCCTC 59.006 66.667 0.00 0.00 0.00 4.30
811 819 2.610859 TGCCCCTGACTTCCCTCC 60.611 66.667 0.00 0.00 0.00 4.30
812 820 3.412408 GCCCCTGACTTCCCTCCC 61.412 72.222 0.00 0.00 0.00 4.30
813 821 2.124996 CCCCTGACTTCCCTCCCA 59.875 66.667 0.00 0.00 0.00 4.37
814 822 1.541368 CCCCTGACTTCCCTCCCAA 60.541 63.158 0.00 0.00 0.00 4.12
815 823 0.921256 CCCCTGACTTCCCTCCCAAT 60.921 60.000 0.00 0.00 0.00 3.16
816 824 0.257039 CCCTGACTTCCCTCCCAATG 59.743 60.000 0.00 0.00 0.00 2.82
817 825 0.995024 CCTGACTTCCCTCCCAATGT 59.005 55.000 0.00 0.00 0.00 2.71
818 826 1.065126 CCTGACTTCCCTCCCAATGTC 60.065 57.143 0.00 0.00 0.00 3.06
819 827 1.630369 CTGACTTCCCTCCCAATGTCA 59.370 52.381 0.00 0.00 34.04 3.58
820 828 1.351017 TGACTTCCCTCCCAATGTCAC 59.649 52.381 0.00 0.00 30.78 3.67
821 829 1.351017 GACTTCCCTCCCAATGTCACA 59.649 52.381 0.00 0.00 0.00 3.58
822 830 1.352352 ACTTCCCTCCCAATGTCACAG 59.648 52.381 0.00 0.00 0.00 3.66
823 831 0.698238 TTCCCTCCCAATGTCACAGG 59.302 55.000 0.00 0.00 0.00 4.00
824 832 0.178876 TCCCTCCCAATGTCACAGGA 60.179 55.000 0.00 0.00 0.00 3.86
825 833 0.921896 CCCTCCCAATGTCACAGGAT 59.078 55.000 0.00 0.00 0.00 3.24
826 834 1.133976 CCCTCCCAATGTCACAGGATC 60.134 57.143 0.00 0.00 0.00 3.36
827 835 1.842562 CCTCCCAATGTCACAGGATCT 59.157 52.381 0.00 0.00 0.00 2.75
828 836 2.421107 CCTCCCAATGTCACAGGATCTG 60.421 54.545 0.00 0.00 37.52 2.90
829 837 2.502947 CTCCCAATGTCACAGGATCTGA 59.497 50.000 1.59 0.00 35.18 3.27
830 838 2.912295 TCCCAATGTCACAGGATCTGAA 59.088 45.455 1.59 0.00 35.18 3.02
831 839 3.524789 TCCCAATGTCACAGGATCTGAAT 59.475 43.478 1.59 0.00 35.18 2.57
832 840 3.881688 CCCAATGTCACAGGATCTGAATC 59.118 47.826 1.59 0.00 35.18 2.52
843 851 2.356069 GGATCTGAATCCCTTGTTTCGC 59.644 50.000 0.00 0.00 45.11 4.70
844 852 1.438651 TCTGAATCCCTTGTTTCGCG 58.561 50.000 0.00 0.00 0.00 5.87
845 853 0.447801 CTGAATCCCTTGTTTCGCGG 59.552 55.000 6.13 0.00 0.00 6.46
846 854 1.136774 GAATCCCTTGTTTCGCGGC 59.863 57.895 6.13 0.00 0.00 6.53
847 855 2.266376 GAATCCCTTGTTTCGCGGCC 62.266 60.000 6.13 0.00 0.00 6.13
850 858 4.383602 CCTTGTTTCGCGGCCGTG 62.384 66.667 32.48 32.48 35.54 4.94
851 859 3.645975 CTTGTTTCGCGGCCGTGT 61.646 61.111 35.52 0.00 35.54 4.49
852 860 3.855209 CTTGTTTCGCGGCCGTGTG 62.855 63.158 35.52 21.53 35.54 3.82
855 863 4.690719 TTTCGCGGCCGTGTGGAT 62.691 61.111 35.52 0.00 37.49 3.41
856 864 4.690719 TTCGCGGCCGTGTGGATT 62.691 61.111 35.52 0.00 37.49 3.01
857 865 2.783241 TTTCGCGGCCGTGTGGATTA 62.783 55.000 35.52 15.03 37.49 1.75
858 866 3.261951 CGCGGCCGTGTGGATTAG 61.262 66.667 30.21 5.07 37.49 1.73
859 867 2.125269 GCGGCCGTGTGGATTAGT 60.125 61.111 28.70 0.00 37.49 2.24
860 868 1.743995 GCGGCCGTGTGGATTAGTT 60.744 57.895 28.70 0.00 37.49 2.24
861 869 1.303091 GCGGCCGTGTGGATTAGTTT 61.303 55.000 28.70 0.00 37.49 2.66
1008 1017 0.459585 GTGCACATCCGTACCGACAT 60.460 55.000 13.17 0.00 0.00 3.06
1024 1033 3.193479 CCGACATATCACTAGCAGGCATA 59.807 47.826 0.00 0.00 0.00 3.14
1047 1062 0.107945 ACGGATTTGGAGCAGCTCTC 60.108 55.000 21.99 11.26 41.15 3.20
1109 1124 3.085533 GTGGTCAGTGCTCTCTTCTCTA 58.914 50.000 0.00 0.00 0.00 2.43
1110 1125 3.508012 GTGGTCAGTGCTCTCTTCTCTAA 59.492 47.826 0.00 0.00 0.00 2.10
1111 1126 4.021894 GTGGTCAGTGCTCTCTTCTCTAAA 60.022 45.833 0.00 0.00 0.00 1.85
1112 1127 4.021894 TGGTCAGTGCTCTCTTCTCTAAAC 60.022 45.833 0.00 0.00 0.00 2.01
1387 1419 4.760047 CCTCCGCTGGTTCACCCG 62.760 72.222 0.00 0.00 35.15 5.28
1394 1426 4.953868 TGGTTCACCCGCGTCACG 62.954 66.667 4.92 0.00 43.15 4.35
1571 1623 1.070786 ATGGCGTGGTTGAGTTCGT 59.929 52.632 0.00 0.00 0.00 3.85
1675 1727 3.213206 TCCCCATGAGTGATTATGTGC 57.787 47.619 0.00 0.00 0.00 4.57
1773 1826 1.798813 GTGACCACCAACGACTTCATC 59.201 52.381 0.00 0.00 0.00 2.92
2083 4534 4.778213 TTTGGGATTGATGAGGTAGGAG 57.222 45.455 0.00 0.00 0.00 3.69
2084 4535 3.421394 TGGGATTGATGAGGTAGGAGT 57.579 47.619 0.00 0.00 0.00 3.85
2295 4746 9.047371 TGAATATGTTTTCGACAAGTGAACTAA 57.953 29.630 0.00 0.00 42.62 2.24
2296 4747 9.530129 GAATATGTTTTCGACAAGTGAACTAAG 57.470 33.333 0.00 0.00 42.62 2.18
2297 4748 6.920569 ATGTTTTCGACAAGTGAACTAAGT 57.079 33.333 0.00 0.00 42.62 2.24
2298 4749 9.701098 ATATGTTTTCGACAAGTGAACTAAGTA 57.299 29.630 0.00 0.00 42.62 2.24
2299 4750 7.225523 TGTTTTCGACAAGTGAACTAAGTAC 57.774 36.000 0.00 0.00 34.69 2.73
2300 4751 7.037438 TGTTTTCGACAAGTGAACTAAGTACT 58.963 34.615 0.00 0.00 34.69 2.73
2301 4752 8.190122 TGTTTTCGACAAGTGAACTAAGTACTA 58.810 33.333 0.00 0.00 34.69 1.82
2356 6457 3.431415 GGGGAAAGGAAATGCTACAGTT 58.569 45.455 0.00 0.00 0.00 3.16
2390 6491 9.079833 CAATCAACCAAACTATCATGTCAATTC 57.920 33.333 0.00 0.00 0.00 2.17
2400 6501 7.483307 ACTATCATGTCAATTCCCATTTTTCG 58.517 34.615 0.00 0.00 0.00 3.46
2461 6562 1.656587 TACCTGGAGCTGGATGTTGT 58.343 50.000 0.00 0.00 0.00 3.32
2528 6629 1.066787 GGGACACTCTTCGCTTAGCTT 60.067 52.381 1.76 0.00 0.00 3.74
2567 6668 3.582647 TGGACTTGCTCTATGAACTTGGA 59.417 43.478 0.00 0.00 0.00 3.53
2613 6714 7.657761 GCTATGTGCTGGTTGTTAGAAGTATAT 59.342 37.037 0.00 0.00 38.95 0.86
2617 6718 9.158233 TGTGCTGGTTGTTAGAAGTATATTTAC 57.842 33.333 0.00 0.00 0.00 2.01
2675 6788 5.785940 AGGTTTAACTTGTCCTCTACTCCAT 59.214 40.000 0.00 0.00 0.00 3.41
2690 6803 2.445525 ACTCCATAGTCTCTCTCCCTCC 59.554 54.545 0.00 0.00 0.00 4.30
2691 6804 2.445145 CTCCATAGTCTCTCTCCCTCCA 59.555 54.545 0.00 0.00 0.00 3.86
2692 6805 3.067470 TCCATAGTCTCTCTCCCTCCAT 58.933 50.000 0.00 0.00 0.00 3.41
2716 6830 9.931698 CATTGTACCTCTATATATACCCCTACA 57.068 37.037 0.00 0.00 0.00 2.74
2717 6831 9.933240 ATTGTACCTCTATATATACCCCTACAC 57.067 37.037 0.00 0.00 0.00 2.90
2827 6955 1.301244 CTCACCACTTCTGCAGCGT 60.301 57.895 9.47 5.70 0.00 5.07
2849 6977 2.029290 GCCGCCTCCGAAGAGATTAATA 60.029 50.000 0.00 0.00 43.39 0.98
3057 7185 0.321564 CCAGCCCAACATCGTCTTCA 60.322 55.000 0.00 0.00 0.00 3.02
3058 7186 1.679944 CCAGCCCAACATCGTCTTCAT 60.680 52.381 0.00 0.00 0.00 2.57
3059 7187 2.086869 CAGCCCAACATCGTCTTCATT 58.913 47.619 0.00 0.00 0.00 2.57
3060 7188 2.096496 CAGCCCAACATCGTCTTCATTC 59.904 50.000 0.00 0.00 0.00 2.67
3061 7189 2.026822 AGCCCAACATCGTCTTCATTCT 60.027 45.455 0.00 0.00 0.00 2.40
3062 7190 2.749621 GCCCAACATCGTCTTCATTCTT 59.250 45.455 0.00 0.00 0.00 2.52
3063 7191 3.181506 GCCCAACATCGTCTTCATTCTTC 60.182 47.826 0.00 0.00 0.00 2.87
3087 7215 0.681887 TTCAGTAGATCCGGCACCGA 60.682 55.000 11.42 0.00 42.83 4.69
3253 7420 2.488545 GCGAGTGATCTACCCGATACAT 59.511 50.000 0.00 0.00 30.84 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.273838 TGGAGGAGGCTACCATTGACT 60.274 52.381 0.00 0.00 0.00 3.41
75 77 2.609299 TTGGAGGCGATGGTGGGA 60.609 61.111 0.00 0.00 0.00 4.37
154 156 2.158234 GGAGGAGGAGATGGTGGTCTAT 60.158 54.545 0.00 0.00 0.00 1.98
158 160 0.618968 GTGGAGGAGGAGATGGTGGT 60.619 60.000 0.00 0.00 0.00 4.16
230 232 4.870426 GCTATCTTCATCGTCAGTCCAAAA 59.130 41.667 0.00 0.00 0.00 2.44
238 240 3.197766 ACCTTTGGCTATCTTCATCGTCA 59.802 43.478 0.00 0.00 0.00 4.35
266 268 2.009051 GATCATGCAACGATGTGACCA 58.991 47.619 6.71 0.00 0.00 4.02
277 279 1.438562 CCATGGCGTCGATCATGCAA 61.439 55.000 17.86 2.18 39.02 4.08
315 317 4.643387 AGTTTGAGCGGGCGCCTT 62.643 61.111 28.56 12.70 43.17 4.35
330 332 0.250234 CATGGATGTGACGGTGGAGT 59.750 55.000 0.00 0.00 0.00 3.85
331 333 1.091771 GCATGGATGTGACGGTGGAG 61.092 60.000 0.00 0.00 0.00 3.86
344 346 4.802051 GCGGCTTGGAGGCATGGA 62.802 66.667 0.00 0.00 41.44 3.41
405 407 1.312371 CGGATCACGGTTGGGCAAAT 61.312 55.000 0.00 0.00 39.42 2.32
476 480 1.247419 CCAGATCTCTCCCGATCCCG 61.247 65.000 0.00 0.00 40.50 5.14
478 482 1.544724 CTCCAGATCTCTCCCGATCC 58.455 60.000 0.00 0.00 40.50 3.36
488 492 1.319799 CCCCCTTCCCTCCAGATCT 59.680 63.158 0.00 0.00 0.00 2.75
525 533 2.021318 ATAGACCCCCTCTCCCCGTC 62.021 65.000 0.00 0.00 0.00 4.79
526 534 0.703758 TATAGACCCCCTCTCCCCGT 60.704 60.000 0.00 0.00 0.00 5.28
527 535 0.039911 CTATAGACCCCCTCTCCCCG 59.960 65.000 0.00 0.00 0.00 5.73
528 536 1.469082 TCTATAGACCCCCTCTCCCC 58.531 60.000 0.00 0.00 0.00 4.81
529 537 3.632420 TTTCTATAGACCCCCTCTCCC 57.368 52.381 0.67 0.00 0.00 4.30
530 538 4.817286 TCTTTTCTATAGACCCCCTCTCC 58.183 47.826 0.67 0.00 0.00 3.71
531 539 6.809976 TTTCTTTTCTATAGACCCCCTCTC 57.190 41.667 0.67 0.00 0.00 3.20
532 540 6.909158 TCATTTCTTTTCTATAGACCCCCTCT 59.091 38.462 0.67 0.00 0.00 3.69
533 541 7.071321 TCTCATTTCTTTTCTATAGACCCCCTC 59.929 40.741 0.67 0.00 0.00 4.30
534 542 6.909158 TCTCATTTCTTTTCTATAGACCCCCT 59.091 38.462 0.67 0.00 0.00 4.79
535 543 7.138054 TCTCATTTCTTTTCTATAGACCCCC 57.862 40.000 0.67 0.00 0.00 5.40
536 544 9.462606 TTTTCTCATTTCTTTTCTATAGACCCC 57.537 33.333 0.67 0.00 0.00 4.95
542 550 9.720769 ACGAGGTTTTCTCATTTCTTTTCTATA 57.279 29.630 0.00 0.00 42.55 1.31
543 551 8.622948 ACGAGGTTTTCTCATTTCTTTTCTAT 57.377 30.769 0.00 0.00 42.55 1.98
544 552 7.931948 AGACGAGGTTTTCTCATTTCTTTTCTA 59.068 33.333 0.00 0.00 42.55 2.10
545 553 6.768381 AGACGAGGTTTTCTCATTTCTTTTCT 59.232 34.615 0.00 0.00 42.55 2.52
546 554 6.960468 AGACGAGGTTTTCTCATTTCTTTTC 58.040 36.000 0.00 0.00 42.55 2.29
547 555 6.944234 AGACGAGGTTTTCTCATTTCTTTT 57.056 33.333 0.00 0.00 42.55 2.27
548 556 6.768381 AGAAGACGAGGTTTTCTCATTTCTTT 59.232 34.615 0.00 0.00 42.55 2.52
549 557 6.292150 AGAAGACGAGGTTTTCTCATTTCTT 58.708 36.000 0.00 0.00 42.55 2.52
550 558 5.859495 AGAAGACGAGGTTTTCTCATTTCT 58.141 37.500 0.00 0.00 42.55 2.52
551 559 6.017852 ACAAGAAGACGAGGTTTTCTCATTTC 60.018 38.462 2.54 0.00 42.55 2.17
552 560 5.823045 ACAAGAAGACGAGGTTTTCTCATTT 59.177 36.000 2.54 0.00 42.55 2.32
553 561 5.368989 ACAAGAAGACGAGGTTTTCTCATT 58.631 37.500 2.54 0.00 42.55 2.57
554 562 4.962155 ACAAGAAGACGAGGTTTTCTCAT 58.038 39.130 2.54 0.00 42.55 2.90
555 563 4.402056 ACAAGAAGACGAGGTTTTCTCA 57.598 40.909 2.54 0.00 42.55 3.27
556 564 5.556570 CGAAACAAGAAGACGAGGTTTTCTC 60.557 44.000 2.54 0.00 36.25 2.87
557 565 4.270325 CGAAACAAGAAGACGAGGTTTTCT 59.730 41.667 0.00 0.00 38.37 2.52
558 566 4.515432 CGAAACAAGAAGACGAGGTTTTC 58.485 43.478 0.00 0.00 32.32 2.29
559 567 3.311596 CCGAAACAAGAAGACGAGGTTTT 59.688 43.478 0.00 0.00 32.32 2.43
560 568 2.870411 CCGAAACAAGAAGACGAGGTTT 59.130 45.455 0.00 0.00 34.64 3.27
561 569 2.480845 CCGAAACAAGAAGACGAGGTT 58.519 47.619 0.00 0.00 0.00 3.50
562 570 1.270147 CCCGAAACAAGAAGACGAGGT 60.270 52.381 0.00 0.00 0.00 3.85
563 571 1.000506 TCCCGAAACAAGAAGACGAGG 59.999 52.381 0.00 0.00 0.00 4.63
564 572 2.329379 CTCCCGAAACAAGAAGACGAG 58.671 52.381 0.00 0.00 0.00 4.18
565 573 1.604693 GCTCCCGAAACAAGAAGACGA 60.605 52.381 0.00 0.00 0.00 4.20
566 574 0.790814 GCTCCCGAAACAAGAAGACG 59.209 55.000 0.00 0.00 0.00 4.18
567 575 1.157585 GGCTCCCGAAACAAGAAGAC 58.842 55.000 0.00 0.00 0.00 3.01
568 576 3.625745 GGCTCCCGAAACAAGAAGA 57.374 52.632 0.00 0.00 0.00 2.87
581 589 1.128188 ATGTTAGGGGATCCGGCTCC 61.128 60.000 16.35 16.35 38.33 4.70
582 590 0.035458 CATGTTAGGGGATCCGGCTC 59.965 60.000 5.45 0.00 38.33 4.70
583 591 2.056906 GCATGTTAGGGGATCCGGCT 62.057 60.000 5.45 0.00 38.33 5.52
584 592 1.600916 GCATGTTAGGGGATCCGGC 60.601 63.158 5.45 0.00 38.33 6.13
585 593 0.535102 GTGCATGTTAGGGGATCCGG 60.535 60.000 5.45 0.00 38.33 5.14
586 594 0.180171 TGTGCATGTTAGGGGATCCG 59.820 55.000 5.45 0.00 38.33 4.18
587 595 2.301346 CTTGTGCATGTTAGGGGATCC 58.699 52.381 1.92 1.92 0.00 3.36
588 596 2.092429 TCCTTGTGCATGTTAGGGGATC 60.092 50.000 0.00 0.00 0.00 3.36
589 597 1.922447 TCCTTGTGCATGTTAGGGGAT 59.078 47.619 0.00 0.00 0.00 3.85
590 598 1.367346 TCCTTGTGCATGTTAGGGGA 58.633 50.000 0.00 0.00 0.00 4.81
591 599 2.214376 TTCCTTGTGCATGTTAGGGG 57.786 50.000 0.00 0.00 0.00 4.79
592 600 3.157087 ACTTTCCTTGTGCATGTTAGGG 58.843 45.455 0.00 0.00 0.00 3.53
593 601 3.820467 TGACTTTCCTTGTGCATGTTAGG 59.180 43.478 0.00 0.00 0.00 2.69
594 602 5.396484 CATGACTTTCCTTGTGCATGTTAG 58.604 41.667 0.00 0.00 0.00 2.34
595 603 4.218200 CCATGACTTTCCTTGTGCATGTTA 59.782 41.667 0.00 0.00 33.22 2.41
596 604 3.006110 CCATGACTTTCCTTGTGCATGTT 59.994 43.478 0.00 0.00 33.22 2.71
597 605 2.559668 CCATGACTTTCCTTGTGCATGT 59.440 45.455 0.00 0.00 33.22 3.21
598 606 2.821378 TCCATGACTTTCCTTGTGCATG 59.179 45.455 0.00 0.00 34.47 4.06
599 607 3.087031 CTCCATGACTTTCCTTGTGCAT 58.913 45.455 0.00 0.00 0.00 3.96
600 608 2.507484 CTCCATGACTTTCCTTGTGCA 58.493 47.619 0.00 0.00 0.00 4.57
601 609 1.200948 GCTCCATGACTTTCCTTGTGC 59.799 52.381 0.00 0.00 0.00 4.57
602 610 2.787994 AGCTCCATGACTTTCCTTGTG 58.212 47.619 0.00 0.00 0.00 3.33
603 611 3.327757 TGTAGCTCCATGACTTTCCTTGT 59.672 43.478 0.00 0.00 0.00 3.16
604 612 3.937706 CTGTAGCTCCATGACTTTCCTTG 59.062 47.826 0.00 0.00 0.00 3.61
605 613 3.584848 ACTGTAGCTCCATGACTTTCCTT 59.415 43.478 0.00 0.00 0.00 3.36
606 614 3.177228 ACTGTAGCTCCATGACTTTCCT 58.823 45.455 0.00 0.00 0.00 3.36
607 615 3.618690 ACTGTAGCTCCATGACTTTCC 57.381 47.619 0.00 0.00 0.00 3.13
608 616 6.166982 AGTTTACTGTAGCTCCATGACTTTC 58.833 40.000 0.00 0.00 0.00 2.62
609 617 6.115448 AGTTTACTGTAGCTCCATGACTTT 57.885 37.500 0.00 0.00 0.00 2.66
610 618 5.746990 AGTTTACTGTAGCTCCATGACTT 57.253 39.130 0.00 0.00 0.00 3.01
611 619 6.381420 ACATAGTTTACTGTAGCTCCATGACT 59.619 38.462 0.00 0.00 0.00 3.41
612 620 6.477033 CACATAGTTTACTGTAGCTCCATGAC 59.523 42.308 0.00 0.00 0.00 3.06
613 621 6.154534 ACACATAGTTTACTGTAGCTCCATGA 59.845 38.462 0.00 0.00 0.00 3.07
614 622 6.341316 ACACATAGTTTACTGTAGCTCCATG 58.659 40.000 0.00 0.00 0.00 3.66
615 623 6.546428 ACACATAGTTTACTGTAGCTCCAT 57.454 37.500 0.00 0.00 0.00 3.41
616 624 5.995565 ACACATAGTTTACTGTAGCTCCA 57.004 39.130 0.00 0.00 0.00 3.86
629 637 9.802039 TCCCTTCTTTGTTTTATACACATAGTT 57.198 29.630 0.00 0.00 36.21 2.24
630 638 9.975218 ATCCCTTCTTTGTTTTATACACATAGT 57.025 29.630 0.00 0.00 36.21 2.12
632 640 9.747898 ACATCCCTTCTTTGTTTTATACACATA 57.252 29.630 0.00 0.00 36.21 2.29
633 641 8.650143 ACATCCCTTCTTTGTTTTATACACAT 57.350 30.769 0.00 0.00 36.21 3.21
634 642 7.094975 CGACATCCCTTCTTTGTTTTATACACA 60.095 37.037 0.00 0.00 36.21 3.72
635 643 7.241376 CGACATCCCTTCTTTGTTTTATACAC 58.759 38.462 0.00 0.00 36.21 2.90
636 644 6.373216 CCGACATCCCTTCTTTGTTTTATACA 59.627 38.462 0.00 0.00 34.12 2.29
637 645 6.183360 CCCGACATCCCTTCTTTGTTTTATAC 60.183 42.308 0.00 0.00 0.00 1.47
638 646 5.883673 CCCGACATCCCTTCTTTGTTTTATA 59.116 40.000 0.00 0.00 0.00 0.98
639 647 4.705023 CCCGACATCCCTTCTTTGTTTTAT 59.295 41.667 0.00 0.00 0.00 1.40
640 648 4.076394 CCCGACATCCCTTCTTTGTTTTA 58.924 43.478 0.00 0.00 0.00 1.52
641 649 2.890945 CCCGACATCCCTTCTTTGTTTT 59.109 45.455 0.00 0.00 0.00 2.43
642 650 2.514803 CCCGACATCCCTTCTTTGTTT 58.485 47.619 0.00 0.00 0.00 2.83
643 651 1.271926 CCCCGACATCCCTTCTTTGTT 60.272 52.381 0.00 0.00 0.00 2.83
644 652 0.328258 CCCCGACATCCCTTCTTTGT 59.672 55.000 0.00 0.00 0.00 2.83
645 653 1.032114 GCCCCGACATCCCTTCTTTG 61.032 60.000 0.00 0.00 0.00 2.77
646 654 1.208165 AGCCCCGACATCCCTTCTTT 61.208 55.000 0.00 0.00 0.00 2.52
647 655 0.326238 TAGCCCCGACATCCCTTCTT 60.326 55.000 0.00 0.00 0.00 2.52
648 656 0.760945 CTAGCCCCGACATCCCTTCT 60.761 60.000 0.00 0.00 0.00 2.85
649 657 1.749033 CTAGCCCCGACATCCCTTC 59.251 63.158 0.00 0.00 0.00 3.46
650 658 2.444256 GCTAGCCCCGACATCCCTT 61.444 63.158 2.29 0.00 0.00 3.95
651 659 2.844839 GCTAGCCCCGACATCCCT 60.845 66.667 2.29 0.00 0.00 4.20
652 660 3.942439 GGCTAGCCCCGACATCCC 61.942 72.222 24.19 0.00 0.00 3.85
663 671 3.406595 ATTCACGGCCAGGGCTAGC 62.407 63.158 12.03 6.04 41.60 3.42
664 672 1.227674 GATTCACGGCCAGGGCTAG 60.228 63.158 12.03 7.46 41.60 3.42
665 673 1.992834 TGATTCACGGCCAGGGCTA 60.993 57.895 12.03 0.00 41.60 3.93
666 674 3.329889 TGATTCACGGCCAGGGCT 61.330 61.111 12.03 0.00 41.60 5.19
667 675 3.134127 GTGATTCACGGCCAGGGC 61.134 66.667 2.24 1.81 41.06 5.19
668 676 1.746615 CAGTGATTCACGGCCAGGG 60.747 63.158 11.01 0.00 39.64 4.45
669 677 0.249120 TACAGTGATTCACGGCCAGG 59.751 55.000 15.58 0.00 39.64 4.45
670 678 1.204704 TCTACAGTGATTCACGGCCAG 59.795 52.381 15.58 12.88 39.64 4.85
671 679 1.262417 TCTACAGTGATTCACGGCCA 58.738 50.000 15.58 4.65 39.64 5.36
672 680 2.101582 AGATCTACAGTGATTCACGGCC 59.898 50.000 15.58 0.00 39.64 6.13
673 681 3.119291 CAGATCTACAGTGATTCACGGC 58.881 50.000 15.58 1.01 39.64 5.68
674 682 3.711086 CCAGATCTACAGTGATTCACGG 58.289 50.000 14.31 14.31 39.64 4.94
675 683 3.119291 GCCAGATCTACAGTGATTCACG 58.881 50.000 11.01 8.72 39.64 4.35
676 684 3.868077 GTGCCAGATCTACAGTGATTCAC 59.132 47.826 8.82 8.82 34.10 3.18
677 685 3.771479 AGTGCCAGATCTACAGTGATTCA 59.229 43.478 0.00 0.00 0.00 2.57
678 686 4.118410 CAGTGCCAGATCTACAGTGATTC 58.882 47.826 20.60 1.49 36.98 2.52
679 687 3.517100 ACAGTGCCAGATCTACAGTGATT 59.483 43.478 27.38 12.17 37.99 2.57
680 688 3.102972 ACAGTGCCAGATCTACAGTGAT 58.897 45.455 27.38 15.37 37.99 3.06
681 689 2.529632 ACAGTGCCAGATCTACAGTGA 58.470 47.619 27.38 0.00 37.99 3.41
682 690 3.325293 AACAGTGCCAGATCTACAGTG 57.675 47.619 22.35 22.35 39.97 3.66
683 691 5.187772 TCATAAACAGTGCCAGATCTACAGT 59.812 40.000 0.00 0.00 0.00 3.55
684 692 5.664457 TCATAAACAGTGCCAGATCTACAG 58.336 41.667 0.00 0.00 0.00 2.74
685 693 5.675684 TCATAAACAGTGCCAGATCTACA 57.324 39.130 0.00 0.00 0.00 2.74
686 694 7.559590 AATTCATAAACAGTGCCAGATCTAC 57.440 36.000 0.00 0.00 0.00 2.59
687 695 8.486210 AGTAATTCATAAACAGTGCCAGATCTA 58.514 33.333 0.00 0.00 0.00 1.98
688 696 7.281774 CAGTAATTCATAAACAGTGCCAGATCT 59.718 37.037 0.00 0.00 0.00 2.75
689 697 7.066284 ACAGTAATTCATAAACAGTGCCAGATC 59.934 37.037 0.00 0.00 0.00 2.75
690 698 6.886459 ACAGTAATTCATAAACAGTGCCAGAT 59.114 34.615 0.00 0.00 0.00 2.90
691 699 6.149308 CACAGTAATTCATAAACAGTGCCAGA 59.851 38.462 0.00 0.00 0.00 3.86
692 700 6.317088 CACAGTAATTCATAAACAGTGCCAG 58.683 40.000 0.00 0.00 0.00 4.85
693 701 5.182950 CCACAGTAATTCATAAACAGTGCCA 59.817 40.000 0.00 0.00 31.50 4.92
694 702 5.414454 TCCACAGTAATTCATAAACAGTGCC 59.586 40.000 0.00 0.00 31.50 5.01
695 703 6.494893 TCCACAGTAATTCATAAACAGTGC 57.505 37.500 0.00 0.00 31.50 4.40
713 721 9.349713 GGGATTCATAAACAGTAATTATCCACA 57.650 33.333 0.00 0.00 32.56 4.17
714 722 9.574516 AGGGATTCATAAACAGTAATTATCCAC 57.425 33.333 0.00 0.00 32.56 4.02
715 723 9.573166 CAGGGATTCATAAACAGTAATTATCCA 57.427 33.333 0.00 0.00 32.56 3.41
716 724 9.014297 CCAGGGATTCATAAACAGTAATTATCC 57.986 37.037 0.00 0.00 0.00 2.59
717 725 9.574516 ACCAGGGATTCATAAACAGTAATTATC 57.425 33.333 0.00 0.00 0.00 1.75
718 726 9.936329 AACCAGGGATTCATAAACAGTAATTAT 57.064 29.630 0.00 0.00 0.00 1.28
720 728 9.408648 CTAACCAGGGATTCATAAACAGTAATT 57.591 33.333 0.00 0.00 0.00 1.40
721 729 8.778059 TCTAACCAGGGATTCATAAACAGTAAT 58.222 33.333 0.00 0.00 0.00 1.89
722 730 8.153221 TCTAACCAGGGATTCATAAACAGTAA 57.847 34.615 0.00 0.00 0.00 2.24
723 731 7.743116 TCTAACCAGGGATTCATAAACAGTA 57.257 36.000 0.00 0.00 0.00 2.74
724 732 6.636454 TCTAACCAGGGATTCATAAACAGT 57.364 37.500 0.00 0.00 0.00 3.55
725 733 7.282585 TGATCTAACCAGGGATTCATAAACAG 58.717 38.462 0.00 0.00 0.00 3.16
726 734 7.206789 TGATCTAACCAGGGATTCATAAACA 57.793 36.000 0.00 0.00 0.00 2.83
727 735 7.175641 CCATGATCTAACCAGGGATTCATAAAC 59.824 40.741 0.00 0.00 37.65 2.01
728 736 7.147141 ACCATGATCTAACCAGGGATTCATAAA 60.147 37.037 0.00 0.00 37.65 1.40
729 737 6.332635 ACCATGATCTAACCAGGGATTCATAA 59.667 38.462 0.00 0.00 37.65 1.90
730 738 5.851693 ACCATGATCTAACCAGGGATTCATA 59.148 40.000 0.00 0.00 37.65 2.15
731 739 4.666907 ACCATGATCTAACCAGGGATTCAT 59.333 41.667 0.00 0.00 37.65 2.57
732 740 4.047166 ACCATGATCTAACCAGGGATTCA 58.953 43.478 0.00 0.00 37.65 2.57
733 741 4.713792 ACCATGATCTAACCAGGGATTC 57.286 45.455 0.00 0.00 37.65 2.52
734 742 5.472301 AAACCATGATCTAACCAGGGATT 57.528 39.130 0.00 0.00 37.65 3.01
735 743 5.073691 CCTAAACCATGATCTAACCAGGGAT 59.926 44.000 0.00 0.00 37.65 3.85
736 744 4.412199 CCTAAACCATGATCTAACCAGGGA 59.588 45.833 0.00 0.00 37.65 4.20
737 745 4.412199 TCCTAAACCATGATCTAACCAGGG 59.588 45.833 0.00 0.00 40.93 4.45
738 746 5.630415 TCCTAAACCATGATCTAACCAGG 57.370 43.478 0.00 0.00 0.00 4.45
739 747 7.938140 TTTTCCTAAACCATGATCTAACCAG 57.062 36.000 0.00 0.00 0.00 4.00
740 748 7.559897 GGATTTTCCTAAACCATGATCTAACCA 59.440 37.037 0.00 0.00 32.53 3.67
741 749 7.255139 CGGATTTTCCTAAACCATGATCTAACC 60.255 40.741 0.00 0.00 33.30 2.85
742 750 7.255139 CCGGATTTTCCTAAACCATGATCTAAC 60.255 40.741 0.00 0.00 33.30 2.34
743 751 6.770785 CCGGATTTTCCTAAACCATGATCTAA 59.229 38.462 0.00 0.00 33.30 2.10
744 752 6.296026 CCGGATTTTCCTAAACCATGATCTA 58.704 40.000 0.00 0.00 33.30 1.98
745 753 5.133221 CCGGATTTTCCTAAACCATGATCT 58.867 41.667 0.00 0.00 33.30 2.75
746 754 4.278419 CCCGGATTTTCCTAAACCATGATC 59.722 45.833 0.73 0.00 33.30 2.92
747 755 4.215109 CCCGGATTTTCCTAAACCATGAT 58.785 43.478 0.73 0.00 33.30 2.45
748 756 3.626222 CCCCGGATTTTCCTAAACCATGA 60.626 47.826 0.73 0.00 33.30 3.07
749 757 2.693074 CCCCGGATTTTCCTAAACCATG 59.307 50.000 0.73 0.00 33.30 3.66
750 758 2.583566 TCCCCGGATTTTCCTAAACCAT 59.416 45.455 0.73 0.00 33.30 3.55
751 759 1.994047 TCCCCGGATTTTCCTAAACCA 59.006 47.619 0.73 0.00 33.30 3.67
752 760 2.812836 TCCCCGGATTTTCCTAAACC 57.187 50.000 0.73 0.00 33.30 3.27
753 761 3.021695 CCTTCCCCGGATTTTCCTAAAC 58.978 50.000 0.73 0.00 33.30 2.01
754 762 2.920941 TCCTTCCCCGGATTTTCCTAAA 59.079 45.455 0.73 0.00 33.30 1.85
755 763 2.564518 TCCTTCCCCGGATTTTCCTAA 58.435 47.619 0.73 0.00 33.30 2.69
756 764 2.273717 TCCTTCCCCGGATTTTCCTA 57.726 50.000 0.73 0.00 33.30 2.94
757 765 1.378732 TTCCTTCCCCGGATTTTCCT 58.621 50.000 0.73 0.00 33.30 3.36
758 766 2.031870 CATTCCTTCCCCGGATTTTCC 58.968 52.381 0.73 0.00 32.02 3.13
759 767 2.688446 GACATTCCTTCCCCGGATTTTC 59.312 50.000 0.73 0.00 32.02 2.29
760 768 2.042433 TGACATTCCTTCCCCGGATTTT 59.958 45.455 0.73 0.00 32.02 1.82
761 769 1.638589 TGACATTCCTTCCCCGGATTT 59.361 47.619 0.73 0.00 32.02 2.17
762 770 1.212935 CTGACATTCCTTCCCCGGATT 59.787 52.381 0.73 0.00 32.02 3.01
763 771 0.839946 CTGACATTCCTTCCCCGGAT 59.160 55.000 0.73 0.00 32.02 4.18
764 772 1.271840 CCTGACATTCCTTCCCCGGA 61.272 60.000 0.73 0.00 0.00 5.14
765 773 1.224592 CCTGACATTCCTTCCCCGG 59.775 63.158 0.00 0.00 0.00 5.73
766 774 1.224592 CCCTGACATTCCTTCCCCG 59.775 63.158 0.00 0.00 0.00 5.73
767 775 1.212195 GTACCCTGACATTCCTTCCCC 59.788 57.143 0.00 0.00 0.00 4.81
768 776 2.092914 CAGTACCCTGACATTCCTTCCC 60.093 54.545 0.00 0.00 41.50 3.97
769 777 2.572104 ACAGTACCCTGACATTCCTTCC 59.428 50.000 0.00 0.00 41.50 3.46
770 778 3.983044 ACAGTACCCTGACATTCCTTC 57.017 47.619 0.00 0.00 41.50 3.46
771 779 3.197983 GCTACAGTACCCTGACATTCCTT 59.802 47.826 0.00 0.00 41.50 3.36
772 780 2.766828 GCTACAGTACCCTGACATTCCT 59.233 50.000 0.00 0.00 41.50 3.36
773 781 2.766828 AGCTACAGTACCCTGACATTCC 59.233 50.000 0.00 0.00 41.50 3.01
774 782 3.786635 CAGCTACAGTACCCTGACATTC 58.213 50.000 0.00 0.00 41.50 2.67
775 783 2.093447 GCAGCTACAGTACCCTGACATT 60.093 50.000 7.42 0.00 41.50 2.71
776 784 1.482593 GCAGCTACAGTACCCTGACAT 59.517 52.381 7.42 0.00 41.50 3.06
777 785 0.895530 GCAGCTACAGTACCCTGACA 59.104 55.000 7.42 0.00 41.50 3.58
778 786 0.175989 GGCAGCTACAGTACCCTGAC 59.824 60.000 7.42 1.80 41.50 3.51
779 787 0.976073 GGGCAGCTACAGTACCCTGA 60.976 60.000 7.42 0.00 41.50 3.86
780 788 1.522569 GGGCAGCTACAGTACCCTG 59.477 63.158 0.00 0.00 44.68 4.45
781 789 1.689582 GGGGCAGCTACAGTACCCT 60.690 63.158 4.39 0.00 40.64 4.34
782 790 1.689582 AGGGGCAGCTACAGTACCC 60.690 63.158 0.00 0.00 40.05 3.69
783 791 0.976073 TCAGGGGCAGCTACAGTACC 60.976 60.000 0.00 0.00 0.00 3.34
784 792 0.175989 GTCAGGGGCAGCTACAGTAC 59.824 60.000 0.00 0.00 0.00 2.73
785 793 0.041238 AGTCAGGGGCAGCTACAGTA 59.959 55.000 0.00 0.00 0.00 2.74
786 794 0.838122 AAGTCAGGGGCAGCTACAGT 60.838 55.000 0.00 0.00 0.00 3.55
787 795 0.107945 GAAGTCAGGGGCAGCTACAG 60.108 60.000 0.00 0.00 0.00 2.74
788 796 1.553690 GGAAGTCAGGGGCAGCTACA 61.554 60.000 0.00 0.00 0.00 2.74
789 797 1.222113 GGAAGTCAGGGGCAGCTAC 59.778 63.158 0.00 0.00 0.00 3.58
790 798 1.995626 GGGAAGTCAGGGGCAGCTA 60.996 63.158 0.00 0.00 0.00 3.32
791 799 3.334054 GGGAAGTCAGGGGCAGCT 61.334 66.667 0.00 0.00 0.00 4.24
792 800 3.334054 AGGGAAGTCAGGGGCAGC 61.334 66.667 0.00 0.00 0.00 5.25
793 801 2.674220 GGAGGGAAGTCAGGGGCAG 61.674 68.421 0.00 0.00 0.00 4.85
794 802 2.610859 GGAGGGAAGTCAGGGGCA 60.611 66.667 0.00 0.00 0.00 5.36
795 803 3.412408 GGGAGGGAAGTCAGGGGC 61.412 72.222 0.00 0.00 0.00 5.80
796 804 0.921256 ATTGGGAGGGAAGTCAGGGG 60.921 60.000 0.00 0.00 0.00 4.79
797 805 0.257039 CATTGGGAGGGAAGTCAGGG 59.743 60.000 0.00 0.00 0.00 4.45
798 806 0.995024 ACATTGGGAGGGAAGTCAGG 59.005 55.000 0.00 0.00 0.00 3.86
799 807 1.630369 TGACATTGGGAGGGAAGTCAG 59.370 52.381 0.00 0.00 32.76 3.51
800 808 1.351017 GTGACATTGGGAGGGAAGTCA 59.649 52.381 0.00 0.00 34.02 3.41
801 809 1.351017 TGTGACATTGGGAGGGAAGTC 59.649 52.381 0.00 0.00 0.00 3.01
802 810 1.352352 CTGTGACATTGGGAGGGAAGT 59.648 52.381 0.00 0.00 0.00 3.01
803 811 1.340405 CCTGTGACATTGGGAGGGAAG 60.340 57.143 0.00 0.00 0.00 3.46
804 812 0.698238 CCTGTGACATTGGGAGGGAA 59.302 55.000 0.00 0.00 0.00 3.97
805 813 0.178876 TCCTGTGACATTGGGAGGGA 60.179 55.000 0.00 0.00 0.00 4.20
806 814 0.921896 ATCCTGTGACATTGGGAGGG 59.078 55.000 0.00 0.00 0.00 4.30
807 815 1.842562 AGATCCTGTGACATTGGGAGG 59.157 52.381 0.00 0.00 0.00 4.30
808 816 2.502947 TCAGATCCTGTGACATTGGGAG 59.497 50.000 0.00 0.00 32.61 4.30
809 817 2.550175 TCAGATCCTGTGACATTGGGA 58.450 47.619 0.00 0.00 32.61 4.37
810 818 3.354948 TTCAGATCCTGTGACATTGGG 57.645 47.619 0.00 0.00 32.61 4.12
823 831 2.030946 CGCGAAACAAGGGATTCAGATC 59.969 50.000 0.00 0.00 0.00 2.75
824 832 2.009774 CGCGAAACAAGGGATTCAGAT 58.990 47.619 0.00 0.00 0.00 2.90
825 833 1.438651 CGCGAAACAAGGGATTCAGA 58.561 50.000 0.00 0.00 0.00 3.27
826 834 0.447801 CCGCGAAACAAGGGATTCAG 59.552 55.000 8.23 0.00 0.00 3.02
827 835 1.582610 GCCGCGAAACAAGGGATTCA 61.583 55.000 8.23 0.00 0.00 2.57
828 836 1.136774 GCCGCGAAACAAGGGATTC 59.863 57.895 8.23 0.00 0.00 2.52
829 837 2.340328 GGCCGCGAAACAAGGGATT 61.340 57.895 8.23 0.00 0.00 3.01
830 838 2.750237 GGCCGCGAAACAAGGGAT 60.750 61.111 8.23 0.00 0.00 3.85
833 841 4.383602 CACGGCCGCGAAACAAGG 62.384 66.667 28.58 0.00 0.00 3.61
834 842 3.645975 ACACGGCCGCGAAACAAG 61.646 61.111 28.58 7.47 0.00 3.16
835 843 3.943034 CACACGGCCGCGAAACAA 61.943 61.111 28.58 0.00 0.00 2.83
838 846 2.783241 TAATCCACACGGCCGCGAAA 62.783 55.000 28.58 7.79 0.00 3.46
839 847 3.298115 TAATCCACACGGCCGCGAA 62.298 57.895 28.58 6.94 0.00 4.70
840 848 3.709880 CTAATCCACACGGCCGCGA 62.710 63.158 28.58 16.28 0.00 5.87
841 849 3.261951 CTAATCCACACGGCCGCG 61.262 66.667 28.58 20.53 0.00 6.46
842 850 1.303091 AAACTAATCCACACGGCCGC 61.303 55.000 28.58 0.00 0.00 6.53
843 851 0.725117 GAAACTAATCCACACGGCCG 59.275 55.000 26.86 26.86 0.00 6.13
844 852 0.725117 CGAAACTAATCCACACGGCC 59.275 55.000 0.00 0.00 0.00 6.13
845 853 0.096454 GCGAAACTAATCCACACGGC 59.904 55.000 0.00 0.00 0.00 5.68
846 854 0.368907 CGCGAAACTAATCCACACGG 59.631 55.000 0.00 0.00 0.00 4.94
847 855 1.320555 CTCGCGAAACTAATCCACACG 59.679 52.381 11.33 0.00 0.00 4.49
848 856 1.659098 CCTCGCGAAACTAATCCACAC 59.341 52.381 11.33 0.00 0.00 3.82
849 857 1.546923 TCCTCGCGAAACTAATCCACA 59.453 47.619 11.33 0.00 0.00 4.17
850 858 2.288961 TCCTCGCGAAACTAATCCAC 57.711 50.000 11.33 0.00 0.00 4.02
851 859 2.418197 CCTTCCTCGCGAAACTAATCCA 60.418 50.000 11.33 0.00 0.00 3.41
852 860 2.159142 TCCTTCCTCGCGAAACTAATCC 60.159 50.000 11.33 0.00 0.00 3.01
853 861 3.160777 TCCTTCCTCGCGAAACTAATC 57.839 47.619 11.33 0.00 0.00 1.75
854 862 3.522553 CTTCCTTCCTCGCGAAACTAAT 58.477 45.455 11.33 0.00 0.00 1.73
855 863 2.929592 GCTTCCTTCCTCGCGAAACTAA 60.930 50.000 11.33 0.99 0.00 2.24
856 864 1.403780 GCTTCCTTCCTCGCGAAACTA 60.404 52.381 11.33 0.00 0.00 2.24
857 865 0.670854 GCTTCCTTCCTCGCGAAACT 60.671 55.000 11.33 0.00 0.00 2.66
858 866 1.636570 GGCTTCCTTCCTCGCGAAAC 61.637 60.000 11.33 0.00 0.00 2.78
859 867 1.375523 GGCTTCCTTCCTCGCGAAA 60.376 57.895 11.33 0.79 0.00 3.46
860 868 2.264794 GGCTTCCTTCCTCGCGAA 59.735 61.111 11.33 0.00 0.00 4.70
861 869 2.680352 AGGCTTCCTTCCTCGCGA 60.680 61.111 9.26 9.26 0.00 5.87
1008 1017 2.557056 GTCGGTATGCCTGCTAGTGATA 59.443 50.000 0.00 0.00 0.00 2.15
1024 1033 1.079127 CTGCTCCAAATCCGTCGGT 60.079 57.895 11.88 0.00 0.00 4.69
1047 1062 0.947244 GGCCATGTCCGCTAAAGATG 59.053 55.000 0.00 0.00 0.00 2.90
1109 1124 7.267857 CAACAAGAGAAAGAAAATGGAGGTTT 58.732 34.615 0.00 0.00 0.00 3.27
1110 1125 6.183360 CCAACAAGAGAAAGAAAATGGAGGTT 60.183 38.462 0.00 0.00 0.00 3.50
1111 1126 5.302823 CCAACAAGAGAAAGAAAATGGAGGT 59.697 40.000 0.00 0.00 0.00 3.85
1112 1127 5.776744 CCAACAAGAGAAAGAAAATGGAGG 58.223 41.667 0.00 0.00 0.00 4.30
1624 1676 0.407139 ATGAACAGCTTCCCCTGCTT 59.593 50.000 0.00 0.00 38.92 3.91
1773 1826 4.649977 CGAGTGAGGTAAGAGAAAGTACG 58.350 47.826 0.00 0.00 0.00 3.67
1779 1832 4.602340 AAAAGCGAGTGAGGTAAGAGAA 57.398 40.909 0.00 0.00 0.00 2.87
1880 3676 4.633565 GCCAGATTCTTTTGGTGAGTCTAG 59.366 45.833 0.00 0.00 36.81 2.43
2298 4749 9.080097 GGGATCACTGTAGTAAATGATAGTAGT 57.920 37.037 0.00 0.00 31.96 2.73
2299 4750 9.303116 AGGGATCACTGTAGTAAATGATAGTAG 57.697 37.037 0.00 0.00 31.96 2.57
2300 4751 9.656323 AAGGGATCACTGTAGTAAATGATAGTA 57.344 33.333 0.00 0.00 31.96 1.82
2301 4752 8.554490 AAGGGATCACTGTAGTAAATGATAGT 57.446 34.615 0.00 0.00 31.96 2.12
2336 4787 5.393135 GCTAAACTGTAGCATTTCCTTTCCC 60.393 44.000 0.52 0.00 40.14 3.97
2338 4789 5.324697 CGCTAAACTGTAGCATTTCCTTTC 58.675 41.667 6.21 0.00 40.39 2.62
2356 6457 3.146066 AGTTTGGTTGATTGAGCGCTAA 58.854 40.909 11.50 0.00 0.00 3.09
2390 6491 5.477510 TGATGAAATGAACCGAAAAATGGG 58.522 37.500 0.00 0.00 0.00 4.00
2400 6501 6.429385 GGAGATACCTGATGATGAAATGAACC 59.571 42.308 0.00 0.00 35.41 3.62
2461 6562 2.572095 AATCCGCACTCGCCGATTCA 62.572 55.000 0.00 0.00 40.61 2.57
2594 6695 8.416485 ACGTAAATATACTTCTAACAACCAGC 57.584 34.615 0.00 0.00 0.00 4.85
2643 6745 8.625467 AGAGGACAAGTTAAACCTATCCTATT 57.375 34.615 0.00 0.00 35.23 1.73
2648 6750 7.123847 TGGAGTAGAGGACAAGTTAAACCTATC 59.876 40.741 0.00 0.00 32.53 2.08
2654 6756 7.894364 AGACTATGGAGTAGAGGACAAGTTAAA 59.106 37.037 0.00 0.00 35.45 1.52
2675 6788 4.386536 GGTACAATGGAGGGAGAGAGACTA 60.387 50.000 0.00 0.00 0.00 2.59
2690 6803 9.931698 TGTAGGGGTATATATAGAGGTACAATG 57.068 37.037 0.00 0.00 0.00 2.82
2691 6804 9.933240 GTGTAGGGGTATATATAGAGGTACAAT 57.067 37.037 0.00 0.00 0.00 2.71
2692 6805 8.049117 CGTGTAGGGGTATATATAGAGGTACAA 58.951 40.741 0.00 0.00 0.00 2.41
2716 6830 3.973206 TGTTGTATTGATCTGACCCGT 57.027 42.857 0.00 0.00 0.00 5.28
2717 6831 8.777865 ATATTATGTTGTATTGATCTGACCCG 57.222 34.615 0.00 0.00 0.00 5.28
2761 6889 6.946583 AGACTAACCGCTCTAATACCATATGA 59.053 38.462 3.65 0.00 0.00 2.15
2764 6892 6.206243 GTGAGACTAACCGCTCTAATACCATA 59.794 42.308 0.00 0.00 32.44 2.74
2827 6955 1.040893 TAATCTCTTCGGAGGCGGCA 61.041 55.000 13.08 0.00 42.08 5.69
2839 6967 5.955355 CCCCGAGGAGAAGATATTAATCTCT 59.045 44.000 11.04 0.00 37.02 3.10
2849 6977 2.840102 CGCCCCCGAGGAGAAGAT 60.840 66.667 0.00 0.00 37.72 2.40
3012 7140 0.669077 ACTCTATCGGATCGCGCTTT 59.331 50.000 5.56 0.00 0.00 3.51
3057 7185 5.355596 CGGATCTACTGAAGCTTGAAGAAT 58.644 41.667 2.10 0.00 0.00 2.40
3058 7186 4.382040 CCGGATCTACTGAAGCTTGAAGAA 60.382 45.833 2.10 0.00 0.00 2.52
3059 7187 3.131223 CCGGATCTACTGAAGCTTGAAGA 59.869 47.826 2.10 0.00 0.00 2.87
3060 7188 3.452474 CCGGATCTACTGAAGCTTGAAG 58.548 50.000 2.10 3.67 0.00 3.02
3061 7189 2.418746 GCCGGATCTACTGAAGCTTGAA 60.419 50.000 5.05 0.00 0.00 2.69
3062 7190 1.137086 GCCGGATCTACTGAAGCTTGA 59.863 52.381 5.05 0.00 0.00 3.02
3063 7191 1.134699 TGCCGGATCTACTGAAGCTTG 60.135 52.381 5.05 0.00 0.00 4.01
3117 7245 4.460683 GCCGCCCATGGTACGTGA 62.461 66.667 19.53 0.00 0.00 4.35
3390 7590 0.733909 CTTCGTGACGCATCTGCTCA 60.734 55.000 0.00 1.08 39.32 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.