AutoCloner

Multiple sequence alignment - TraesCS3B01G212300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G212300	chr3B	100.000	7236	0	0	1	7236	252185473	252192708	0	13363
1	TraesCS3B01G212300	chr3B	95.679	6040	230	26	1	6024	236260867	236254843	0	9679
2	TraesCS3B01G212300	chr3B	89.276	1408	132	14	1	1404	572150985	572149593	0	1746
3	TraesCS3B01G212300	chr2B	96.251	7282	219	31	1	7236	261018130	261025403	0	11886
4	TraesCS3B01G212300	chr2B	95.497	7284	261	32	1	7236	209875994	209868730	0	11572
5	TraesCS3B01G212300	chr2B	94.648	6577	268	36	1	6551	179064058	179070576	0	10118
6	TraesCS3B01G212300	chr2B	95.762	6135	224	23	1	6122	701270987	701264876	0	9856
7	TraesCS3B01G212300	chr2B	93.604	1626	63	12	5645	7236	75306297	75304679	0	2388
8	TraesCS3B01G212300	chr2B	92.729	1114	47	12	6157	7236	701264877	701263764	0	1578
9	TraesCS3B01G212300	chr7B	95.493	7278	273	22	1	7236	430145637	430152901	0	11572
10	TraesCS3B01G212300	chr7B	94.981	6575	266	28	1	6551	207971324	207977858	0	10255
11	TraesCS3B01G212300	chr7B	92.266	2017	108	28	5262	7236	202720998	202718988	0	2817
12	TraesCS3B01G212300	chr7B	91.592	2022	113	31	5262	7236	381021237	381019226	0	2739
13	TraesCS3B01G212300	chr6B	95.117	7291	277	48	1	7236	379095865	379088599	0	11418
14	TraesCS3B01G212300	chr6B	93.559	2422	104	10	4855	7236	378842975	378845384	0	3561
15	TraesCS3B01G212300	chr1B	95.940	5764	209	20	1	5755	330756300	330762047	0	9324
16	TraesCS3B01G212300	chr1B	91.889	2022	104	34	5262	7236	163065536	163063528	0	2771
17	TraesCS3B01G212300	chr1B	93.171	1435	64	12	5836	7236	330762052	330763486	0	2076
18	TraesCS3B01G212300	chr1B	93.637	1163	39	8	6108	7236	290980156	290981317	0	1705
19	TraesCS3B01G212300	chr5B	91.837	1568	80	23	5262	6789	197392398	197393957	0	2143

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G212300	chr3B	252185473	252192708	7235	False	13363	13363	100.0000	1	7236	1	chr3B.!!$F1	7235
1	TraesCS3B01G212300	chr3B	236254843	236260867	6024	True	9679	9679	95.6790	1	6024	1	chr3B.!!$R1	6023
2	TraesCS3B01G212300	chr3B	572149593	572150985	1392	True	1746	1746	89.2760	1	1404	1	chr3B.!!$R2	1403
3	TraesCS3B01G212300	chr2B	261018130	261025403	7273	False	11886	11886	96.2510	1	7236	1	chr2B.!!$F2	7235
4	TraesCS3B01G212300	chr2B	209868730	209875994	7264	True	11572	11572	95.4970	1	7236	1	chr2B.!!$R2	7235
5	TraesCS3B01G212300	chr2B	179064058	179070576	6518	False	10118	10118	94.6480	1	6551	1	chr2B.!!$F1	6550
6	TraesCS3B01G212300	chr2B	701263764	701270987	7223	True	5717	9856	94.2455	1	7236	2	chr2B.!!$R3	7235
7	TraesCS3B01G212300	chr2B	75304679	75306297	1618	True	2388	2388	93.6040	5645	7236	1	chr2B.!!$R1	1591
8	TraesCS3B01G212300	chr7B	430145637	430152901	7264	False	11572	11572	95.4930	1	7236	1	chr7B.!!$F2	7235
9	TraesCS3B01G212300	chr7B	207971324	207977858	6534	False	10255	10255	94.9810	1	6551	1	chr7B.!!$F1	6550
10	TraesCS3B01G212300	chr7B	202718988	202720998	2010	True	2817	2817	92.2660	5262	7236	1	chr7B.!!$R1	1974
11	TraesCS3B01G212300	chr7B	381019226	381021237	2011	True	2739	2739	91.5920	5262	7236	1	chr7B.!!$R2	1974
12	TraesCS3B01G212300	chr6B	379088599	379095865	7266	True	11418	11418	95.1170	1	7236	1	chr6B.!!$R1	7235
13	TraesCS3B01G212300	chr6B	378842975	378845384	2409	False	3561	3561	93.5590	4855	7236	1	chr6B.!!$F1	2381
14	TraesCS3B01G212300	chr1B	330756300	330763486	7186	False	5700	9324	94.5555	1	7236	2	chr1B.!!$F2	7235
15	TraesCS3B01G212300	chr1B	163063528	163065536	2008	True	2771	2771	91.8890	5262	7236	1	chr1B.!!$R1	1974
16	TraesCS3B01G212300	chr1B	290980156	290981317	1161	False	1705	1705	93.6370	6108	7236	1	chr1B.!!$F1	1128
17	TraesCS3B01G212300	chr5B	197392398	197393957	1559	False	2143	2143	91.8370	5262	6789	1	chr5B.!!$F1	1527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
889	897	0.664166	CGCACTGCACAAAATCCCAC	60.664	55.000	1.11	0.0	0.00	4.61	F
1161	1169	0.900182	TGGAGATCGTCTGCACCAGT	60.900	55.000	5.39	0.0	39.98	4.00	F
2225	2243	1.097547	CAGCGTCATCCACCCATTCC	61.098	60.000	0.00	0.0	0.00	3.01	F
2325	2343	1.941294	CGAGTACGCAGGAGTAGATGT	59.059	52.381	0.00	0.0	0.00	3.06	F
2563	2581	3.000041	TGTGATTATGTCGTGCTTGTCC	59.000	45.455	0.00	0.0	0.00	4.02	F
4033	4066	0.539438	ATGCCCACACCACAACGAAT	60.539	50.000	0.00	0.0	0.00	3.34	F
4685	4729	1.538075	ACGCACTTCAAAAATACCCCG	59.462	47.619	0.00	0.0	0.00	5.73	F
5926	5993	0.239347	CCAAGCGCCTCAAAGACTTG	59.761	55.000	2.29	0.0	37.94	3.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2357	2375	2.289444	CCCAACCGTCTGTGATGTAGTT	60.289	50.000	0.00	0.00	0.00	2.24	R
2459	2477	2.836262	TCGGAAGTAAAACGAAGGCAA	58.164	42.857	0.00	0.00	33.21	4.52	R
3252	3276	2.004017	CGGACCTGTTTATAAGCGCAA	58.996	47.619	11.47	0.00	0.00	4.85	R
4017	4049	3.126858	CAGATTATTCGTTGTGGTGTGGG	59.873	47.826	0.00	0.00	0.00	4.61	R
4051	4084	4.086706	ACTTAGGTTGGGTGTTTGAGAG	57.913	45.455	0.00	0.00	0.00	3.20	R
4922	4968	0.036732	TCCAGCGTCTCTTTGCCATT	59.963	50.000	0.00	0.00	0.00	3.16	R
5981	6048	1.439543	ACAGACTTCCCCAGCTTCTT	58.560	50.000	0.00	0.00	0.00	2.52	R
6858	6965	3.008375	AGAAGTTTCAGTCCTAGCATGCA	59.992	43.478	21.98	5.01	0.00	3.96	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
208	209	9.530633	GATAAATCTCAGTCGGTAGTACAAAAT	57.469	33.333	2.06	0.00	0.00	1.82
581	589	1.337728	TGACACGTGCAAGTGGGATAG	60.338	52.381	31.47	10.38	45.80	2.08
672	680	1.526575	CGTGCAAGTGGGATTTGGCT	61.527	55.000	0.00	0.00	0.00	4.75
675	683	1.593265	CAAGTGGGATTTGGCTGGC	59.407	57.895	0.00	0.00	0.00	4.85
759	767	4.481368	AGTTATTCCACGCAACCATCTA	57.519	40.909	0.00	0.00	0.00	1.98
771	779	2.172505	CAACCATCTATGCCACCCACTA	59.827	50.000	0.00	0.00	0.00	2.74
889	897	0.664166	CGCACTGCACAAAATCCCAC	60.664	55.000	1.11	0.00	0.00	4.61
891	899	1.069049	GCACTGCACAAAATCCCACTT	59.931	47.619	0.00	0.00	0.00	3.16
926	934	1.613437	CTCATTCCCACAAACCACCAC	59.387	52.381	0.00	0.00	0.00	4.16
1128	1136	1.075601	TCAAAGGGGTTGAGCTCCAT	58.924	50.000	12.15	0.00	41.47	3.41
1161	1169	0.900182	TGGAGATCGTCTGCACCAGT	60.900	55.000	5.39	0.00	39.98	4.00
1394	1403	8.299570	CCCTGCATATGGTTTATCTGTTTTATC	58.700	37.037	4.56	0.00	0.00	1.75
1594	1606	7.450124	AGTTGATCGACTAGTGAAGTTTCTA	57.550	36.000	14.30	0.00	39.07	2.10
2101	2119	2.838736	AGCGACAAAGAGAAGCTGAAA	58.161	42.857	0.00	0.00	36.73	2.69
2225	2243	1.097547	CAGCGTCATCCACCCATTCC	61.098	60.000	0.00	0.00	0.00	3.01
2325	2343	1.941294	CGAGTACGCAGGAGTAGATGT	59.059	52.381	0.00	0.00	0.00	3.06
2459	2477	5.366186	ACTGGATGAAGATAACATCAGAGCT	59.634	40.000	0.00	0.00	43.84	4.09
2563	2581	3.000041	TGTGATTATGTCGTGCTTGTCC	59.000	45.455	0.00	0.00	0.00	4.02
2566	2584	3.056179	TGATTATGTCGTGCTTGTCCTGA	60.056	43.478	0.00	0.00	0.00	3.86
2750	2768	6.183360	TGCAACTAATAACACAACGTTGTTCT	60.183	34.615	30.49	21.50	39.40	3.01
2827	2848	4.623932	ACTACAAAGAAGCATCAGTCCA	57.376	40.909	0.00	0.00	0.00	4.02
2885	2906	5.103000	CAGTCTACACACAAGTACCATAGC	58.897	45.833	0.00	0.00	0.00	2.97
3116	3140	4.960938	ACAATGCTAGACACTTGAACTCA	58.039	39.130	0.00	0.00	0.00	3.41
3252	3276	3.374402	CGACTGGTGAGCCTCCGT	61.374	66.667	0.00	0.00	35.27	4.69
4033	4066	0.539438	ATGCCCACACCACAACGAAT	60.539	50.000	0.00	0.00	0.00	3.34
4051	4084	8.598075	ACAACGAATAATCTGGTCGTAAAATAC	58.402	33.333	0.00	0.00	46.62	1.89
4176	4209	3.181471	ACATCAAATTTCAAACCCGTGCA	60.181	39.130	0.00	0.00	0.00	4.57
4205	4239	9.051027	GTATGAAATTACAATTCAGTTCACACG	57.949	33.333	0.00	0.00	39.92	4.49
4414	4452	4.336433	CGGAAAAACATCACAGAGCCATAT	59.664	41.667	0.00	0.00	0.00	1.78
4490	4531	7.806180	AGTGGGATTTAGCAGATTGTAAGTAT	58.194	34.615	0.00	0.00	0.00	2.12
4627	4670	2.211410	CCCCACGACCACTACACCA	61.211	63.158	0.00	0.00	0.00	4.17
4672	4716	3.908081	ACCACCGTCGACGCACTT	61.908	61.111	31.73	13.07	38.18	3.16
4685	4729	1.538075	ACGCACTTCAAAAATACCCCG	59.462	47.619	0.00	0.00	0.00	5.73
4751	4795	3.402110	TCCATCTACACTGCACACAAAG	58.598	45.455	0.00	0.00	0.00	2.77
4924	4970	2.978156	TCAAAGGGGTTGAGCTCAAT	57.022	45.000	30.65	13.30	41.47	2.57
4991	5037	0.463204	CGACCAGATGATGAGCAGGT	59.537	55.000	0.00	0.00	0.00	4.00
4992	5038	1.537776	CGACCAGATGATGAGCAGGTC	60.538	57.143	1.86	1.86	41.53	3.85
5183	5229	8.093927	TGTTCATTCATCTGTTGTATCAGTACA	58.906	33.333	0.00	0.00	39.00	2.90
5293	5339	5.876651	ATAGTCTATGAAGTGGATGCACA	57.123	39.130	20.21	0.00	0.00	4.57
5307	5353	6.658816	AGTGGATGCACAATTACATGTTTCTA	59.341	34.615	20.21	0.00	0.00	2.10
5524	5572	4.214971	GGTCCATATCTTGATGCACATGTC	59.785	45.833	0.00	0.00	0.00	3.06
5528	5576	5.763698	CCATATCTTGATGCACATGTCTCTT	59.236	40.000	0.00	0.00	0.00	2.85
5745	5803	7.073265	ACACGGTGTAGTTGAATTTAATTTCG	58.927	34.615	12.96	0.00	0.00	3.46
5926	5993	0.239347	CCAAGCGCCTCAAAGACTTG	59.761	55.000	2.29	0.00	37.94	3.16
5958	6025	6.215845	AGGAGAAATTGTACACATTTGTTGC	58.784	36.000	15.92	11.12	37.15	4.17
5981	6048	1.699083	TCAGCATTGGAGGTGACAAGA	59.301	47.619	0.00	0.00	40.73	3.02
6000	6067	1.349357	GAAGAAGCTGGGGAAGTCTGT	59.651	52.381	0.00	0.00	0.00	3.41
6259	6326	3.498397	AGACAATTGACAACATCGTGACC	59.502	43.478	13.59	0.00	0.00	4.02
6260	6327	3.210227	ACAATTGACAACATCGTGACCA	58.790	40.909	13.59	0.00	0.00	4.02
6335	6403	4.122046	CACGGATGAGATGCATGAAAGTA	58.878	43.478	2.46	0.00	37.34	2.24
6383	6451	6.439636	ACCATATGCTATGTGTGTCCTTAT	57.560	37.500	0.00	0.00	0.00	1.73
6529	6601	7.290110	ACAAGTTTGCTAGCTTCCTATTTTT	57.710	32.000	17.23	0.00	0.00	1.94
6663	6763	3.270877	CAAATAGTAGCCTTGGACGCTT	58.729	45.455	0.00	0.00	37.79	4.68
6820	6927	1.808411	ATTCACGTACTGCAACAGGG	58.192	50.000	0.00	0.00	35.51	4.45
6858	6965	8.411683	CCATCAGTACGTATTTCCTAGTAACTT	58.588	37.037	0.00	0.00	0.00	2.66
7154	7269	5.471797	TCACAAGAAACACAACAGAAAGACA	59.528	36.000	0.00	0.00	0.00	3.41
7161	7276	8.204836	AGAAACACAACAGAAAGACATACTAGT	58.795	33.333	0.00	0.00	0.00	2.57

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
208	209	5.358442	ACTGGTGTGTTTGTTTTACTATGCA	59.642	36.000	0.00	0.00	0.00	3.96
279	284	1.361204	TCTGAATTGGGACTGGCAGA	58.639	50.000	23.66	0.00	0.00	4.26
672	680	2.304470	TGTCAAGCTGTACTTATGGCCA	59.696	45.455	8.56	8.56	36.04	5.36
675	683	5.482908	AGTCTTGTCAAGCTGTACTTATGG	58.517	41.667	7.78	0.00	36.04	2.74
759	767	2.137177	AACCGCTTAGTGGGTGGCAT	62.137	55.000	16.78	0.00	37.55	4.40
771	779	0.818040	GTCCCTTGTGTCAACCGCTT	60.818	55.000	0.00	0.00	0.00	4.68
819	827	1.666872	GGGGTCGTGTGTGTAGTGC	60.667	63.158	0.00	0.00	0.00	4.40
889	897	5.372373	GAATGAGGGAGAGGTGGAATAAAG	58.628	45.833	0.00	0.00	0.00	1.85
891	899	3.716872	GGAATGAGGGAGAGGTGGAATAA	59.283	47.826	0.00	0.00	0.00	1.40
926	934	0.962356	AGTGGAAATGGAAGCGGCAG	60.962	55.000	1.45	0.00	0.00	4.85
1128	1136	3.573772	CTCCAGCGTCTCGTTGCCA	62.574	63.158	0.84	0.00	36.79	4.92
1161	1169	0.320073	CGTCGGCCTTTTCTGGTACA	60.320	55.000	0.00	0.00	0.00	2.90
1302	1310	0.753262	ACACCAAGCAGAGTTCGTCT	59.247	50.000	0.00	0.00	35.00	4.18
1566	1578	6.085555	ACTTCACTAGTCGATCAACTTCAA	57.914	37.500	0.00	0.00	28.23	2.69
1715	1729	4.163458	AGAAACCAGTACTTCACCAAGTCA	59.837	41.667	0.00	0.00	42.27	3.41
1728	1742	5.772393	ATGGGATAACACAGAAACCAGTA	57.228	39.130	0.00	0.00	30.90	2.74
1916	1930	4.679373	AGCGATGAATCCATGAAGTAGT	57.321	40.909	0.00	0.00	32.09	2.73
2101	2119	3.181454	GGTTGATCTCCATACCGGACAAT	60.181	47.826	9.46	0.00	39.64	2.71
2225	2243	4.572985	TCTTGTTCTTCATGCCTTTGTG	57.427	40.909	0.00	0.00	0.00	3.33
2357	2375	2.289444	CCCAACCGTCTGTGATGTAGTT	60.289	50.000	0.00	0.00	0.00	2.24
2459	2477	2.836262	TCGGAAGTAAAACGAAGGCAA	58.164	42.857	0.00	0.00	33.21	4.52
2750	2768	4.643334	AGTGTACTGAGTTGTACTGACACA	59.357	41.667	13.15	0.00	42.22	3.72
2807	2825	6.238320	GCTTATGGACTGATGCTTCTTTGTAG	60.238	42.308	0.88	0.00	0.00	2.74
2827	2848	4.887748	AGTGCATTCATAGTAGCGCTTAT	58.112	39.130	18.68	5.30	44.58	1.73
2885	2906	5.049818	GTGTCTTCTGGTGTCATTTTCAGAG	60.050	44.000	0.00	0.00	37.52	3.35
2972	2993	4.631377	TCTTGTCAGTTTTGTGTGAGTCTG	59.369	41.667	0.00	0.00	0.00	3.51
2974	2995	5.122396	AGTTCTTGTCAGTTTTGTGTGAGTC	59.878	40.000	0.00	0.00	0.00	3.36
3092	3116	5.220710	AGTTCAAGTGTCTAGCATTGTCT	57.779	39.130	0.00	0.00	0.00	3.41
3128	3152	4.196971	GTTGTGCGGATTACTAGGGATTT	58.803	43.478	0.00	0.00	0.00	2.17
3201	3225	5.277857	ACACTTACCTGAGCGCTTATATT	57.722	39.130	13.26	0.00	0.00	1.28
3202	3226	4.939052	ACACTTACCTGAGCGCTTATAT	57.061	40.909	13.26	0.24	0.00	0.86
3252	3276	2.004017	CGGACCTGTTTATAAGCGCAA	58.996	47.619	11.47	0.00	0.00	4.85
3594	3622	9.704098	GAGTTTTAGTAGTTGAACTTGAAAGTG	57.296	33.333	1.97	0.00	39.66	3.16
4008	4040	3.324993	GTTGTGGTGTGGGCATATTTTG	58.675	45.455	0.00	0.00	0.00	2.44
4017	4049	3.126858	CAGATTATTCGTTGTGGTGTGGG	59.873	47.826	0.00	0.00	0.00	4.61
4033	4066	9.362539	GTTTGAGAGTATTTTACGACCAGATTA	57.637	33.333	0.00	0.00	0.00	1.75
4051	4084	4.086706	ACTTAGGTTGGGTGTTTGAGAG	57.913	45.455	0.00	0.00	0.00	3.20
4414	4452	5.347342	CATTTTTGCACTGTTTAGGTGACA	58.653	37.500	0.00	0.00	36.89	3.58
4490	4531	6.172630	TGCATTGATTAGTCTTGTCAAGCTA	58.827	36.000	7.78	9.58	35.56	3.32
4672	4716	3.822167	GGAAGACAACGGGGTATTTTTGA	59.178	43.478	0.00	0.00	0.00	2.69
4685	4729	2.027745	TGAGGCAGAGATGGAAGACAAC	60.028	50.000	0.00	0.00	0.00	3.32
4751	4795	3.333804	CTTGGGAGAGAGAAGTTTCTGC	58.666	50.000	0.00	0.00	37.73	4.26
4754	4798	2.616765	GGGCTTGGGAGAGAGAAGTTTC	60.617	54.545	0.00	0.00	0.00	2.78
4813	4859	2.560119	GCCATGGTGACGTTTGGCA	61.560	57.895	14.67	0.00	46.70	4.92
4888	4934	4.201871	CCTTTGAGCGTTTTTGTGTACTCA	60.202	41.667	0.00	0.00	32.62	3.41
4897	4943	2.104170	TCAACCCCTTTGAGCGTTTTT	58.896	42.857	0.00	0.00	39.45	1.94
4922	4968	0.036732	TCCAGCGTCTCTTTGCCATT	59.963	50.000	0.00	0.00	0.00	3.16
4924	4970	1.004560	CTCCAGCGTCTCTTTGCCA	60.005	57.895	0.00	0.00	0.00	4.92
4991	5037	3.797353	GCCGCCCTTCATCCTGGA	61.797	66.667	0.00	0.00	0.00	3.86
5089	5135	0.039074	AGAGTTCCTCGACGCACAAG	60.039	55.000	0.00	0.00	35.36	3.16
5176	5222	8.597662	ATTAAGTTTTTAGCGACTTGTACTGA	57.402	30.769	0.00	0.00	36.79	3.41
5307	5353	6.040842	ACAGTTCCAGAAATGCATGTAACTTT	59.959	34.615	0.00	0.00	39.72	2.66
5392	5440	7.725251	TCAAGTTCAGAAATTAATTTGGTGCT	58.275	30.769	17.98	6.15	0.00	4.40
5476	5524	7.281100	CCTATACCACTTCACCAAAGATCTTTC	59.719	40.741	17.91	0.00	38.44	2.62
5662	5720	5.047092	ACCAAATGCTTCACCAAATTAGAGG	60.047	40.000	0.00	0.00	0.00	3.69
5745	5803	7.498239	AGTTCAGAAACTAGTACAAAAAGTCCC	59.502	37.037	0.00	0.00	43.98	4.46
5926	5993	1.831580	ACAATTTCTCCTCCTGCAGC	58.168	50.000	8.66	0.00	0.00	5.25
5958	6025	2.507484	TGTCACCTCCAATGCTGAAAG	58.493	47.619	0.00	0.00	0.00	2.62
5981	6048	1.439543	ACAGACTTCCCCAGCTTCTT	58.560	50.000	0.00	0.00	0.00	2.52
6000	6067	4.226168	AGTTGTTGGGGTTGATTTCCAAAA	59.774	37.500	0.00	0.00	41.54	2.44
6259	6326	6.271488	TGCTCTTTTGAAATATCCCAACTG	57.729	37.500	0.00	0.00	0.00	3.16
6260	6327	5.420104	CCTGCTCTTTTGAAATATCCCAACT	59.580	40.000	0.00	0.00	0.00	3.16
6335	6403	4.675146	GCTGGTTCAACATAACGAATGCAT	60.675	41.667	0.00	0.00	39.39	3.96
6383	6451	8.220755	AGCAAACTACAAATCTACAACAAGAA	57.779	30.769	0.00	0.00	0.00	2.52
6663	6763	4.703575	ACCGTTCATGTCTAAGCTGTACTA	59.296	41.667	0.00	0.00	0.00	1.82
6820	6927	4.213482	ACGTACTGATGGTTCTTTGCTTTC	59.787	41.667	0.00	0.00	0.00	2.62
6858	6965	3.008375	AGAAGTTTCAGTCCTAGCATGCA	59.992	43.478	21.98	5.01	0.00	3.96
7202	7317	7.807977	AGTTGTACTGAGATTTCAATTGTGT	57.192	32.000	5.13	0.00	31.69	3.72

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.