Multiple sequence alignment - TraesCS3B01G212300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G212300 chr3B 100.000 7236 0 0 1 7236 252185473 252192708 0 13363
1 TraesCS3B01G212300 chr3B 95.679 6040 230 26 1 6024 236260867 236254843 0 9679
2 TraesCS3B01G212300 chr3B 89.276 1408 132 14 1 1404 572150985 572149593 0 1746
3 TraesCS3B01G212300 chr2B 96.251 7282 219 31 1 7236 261018130 261025403 0 11886
4 TraesCS3B01G212300 chr2B 95.497 7284 261 32 1 7236 209875994 209868730 0 11572
5 TraesCS3B01G212300 chr2B 94.648 6577 268 36 1 6551 179064058 179070576 0 10118
6 TraesCS3B01G212300 chr2B 95.762 6135 224 23 1 6122 701270987 701264876 0 9856
7 TraesCS3B01G212300 chr2B 93.604 1626 63 12 5645 7236 75306297 75304679 0 2388
8 TraesCS3B01G212300 chr2B 92.729 1114 47 12 6157 7236 701264877 701263764 0 1578
9 TraesCS3B01G212300 chr7B 95.493 7278 273 22 1 7236 430145637 430152901 0 11572
10 TraesCS3B01G212300 chr7B 94.981 6575 266 28 1 6551 207971324 207977858 0 10255
11 TraesCS3B01G212300 chr7B 92.266 2017 108 28 5262 7236 202720998 202718988 0 2817
12 TraesCS3B01G212300 chr7B 91.592 2022 113 31 5262 7236 381021237 381019226 0 2739
13 TraesCS3B01G212300 chr6B 95.117 7291 277 48 1 7236 379095865 379088599 0 11418
14 TraesCS3B01G212300 chr6B 93.559 2422 104 10 4855 7236 378842975 378845384 0 3561
15 TraesCS3B01G212300 chr1B 95.940 5764 209 20 1 5755 330756300 330762047 0 9324
16 TraesCS3B01G212300 chr1B 91.889 2022 104 34 5262 7236 163065536 163063528 0 2771
17 TraesCS3B01G212300 chr1B 93.171 1435 64 12 5836 7236 330762052 330763486 0 2076
18 TraesCS3B01G212300 chr1B 93.637 1163 39 8 6108 7236 290980156 290981317 0 1705
19 TraesCS3B01G212300 chr5B 91.837 1568 80 23 5262 6789 197392398 197393957 0 2143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G212300 chr3B 252185473 252192708 7235 False 13363 13363 100.0000 1 7236 1 chr3B.!!$F1 7235
1 TraesCS3B01G212300 chr3B 236254843 236260867 6024 True 9679 9679 95.6790 1 6024 1 chr3B.!!$R1 6023
2 TraesCS3B01G212300 chr3B 572149593 572150985 1392 True 1746 1746 89.2760 1 1404 1 chr3B.!!$R2 1403
3 TraesCS3B01G212300 chr2B 261018130 261025403 7273 False 11886 11886 96.2510 1 7236 1 chr2B.!!$F2 7235
4 TraesCS3B01G212300 chr2B 209868730 209875994 7264 True 11572 11572 95.4970 1 7236 1 chr2B.!!$R2 7235
5 TraesCS3B01G212300 chr2B 179064058 179070576 6518 False 10118 10118 94.6480 1 6551 1 chr2B.!!$F1 6550
6 TraesCS3B01G212300 chr2B 701263764 701270987 7223 True 5717 9856 94.2455 1 7236 2 chr2B.!!$R3 7235
7 TraesCS3B01G212300 chr2B 75304679 75306297 1618 True 2388 2388 93.6040 5645 7236 1 chr2B.!!$R1 1591
8 TraesCS3B01G212300 chr7B 430145637 430152901 7264 False 11572 11572 95.4930 1 7236 1 chr7B.!!$F2 7235
9 TraesCS3B01G212300 chr7B 207971324 207977858 6534 False 10255 10255 94.9810 1 6551 1 chr7B.!!$F1 6550
10 TraesCS3B01G212300 chr7B 202718988 202720998 2010 True 2817 2817 92.2660 5262 7236 1 chr7B.!!$R1 1974
11 TraesCS3B01G212300 chr7B 381019226 381021237 2011 True 2739 2739 91.5920 5262 7236 1 chr7B.!!$R2 1974
12 TraesCS3B01G212300 chr6B 379088599 379095865 7266 True 11418 11418 95.1170 1 7236 1 chr6B.!!$R1 7235
13 TraesCS3B01G212300 chr6B 378842975 378845384 2409 False 3561 3561 93.5590 4855 7236 1 chr6B.!!$F1 2381
14 TraesCS3B01G212300 chr1B 330756300 330763486 7186 False 5700 9324 94.5555 1 7236 2 chr1B.!!$F2 7235
15 TraesCS3B01G212300 chr1B 163063528 163065536 2008 True 2771 2771 91.8890 5262 7236 1 chr1B.!!$R1 1974
16 TraesCS3B01G212300 chr1B 290980156 290981317 1161 False 1705 1705 93.6370 6108 7236 1 chr1B.!!$F1 1128
17 TraesCS3B01G212300 chr5B 197392398 197393957 1559 False 2143 2143 91.8370 5262 6789 1 chr5B.!!$F1 1527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
889 897 0.664166 CGCACTGCACAAAATCCCAC 60.664 55.000 1.11 0.0 0.00 4.61 F
1161 1169 0.900182 TGGAGATCGTCTGCACCAGT 60.900 55.000 5.39 0.0 39.98 4.00 F
2225 2243 1.097547 CAGCGTCATCCACCCATTCC 61.098 60.000 0.00 0.0 0.00 3.01 F
2325 2343 1.941294 CGAGTACGCAGGAGTAGATGT 59.059 52.381 0.00 0.0 0.00 3.06 F
2563 2581 3.000041 TGTGATTATGTCGTGCTTGTCC 59.000 45.455 0.00 0.0 0.00 4.02 F
4033 4066 0.539438 ATGCCCACACCACAACGAAT 60.539 50.000 0.00 0.0 0.00 3.34 F
4685 4729 1.538075 ACGCACTTCAAAAATACCCCG 59.462 47.619 0.00 0.0 0.00 5.73 F
5926 5993 0.239347 CCAAGCGCCTCAAAGACTTG 59.761 55.000 2.29 0.0 37.94 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2357 2375 2.289444 CCCAACCGTCTGTGATGTAGTT 60.289 50.000 0.00 0.00 0.00 2.24 R
2459 2477 2.836262 TCGGAAGTAAAACGAAGGCAA 58.164 42.857 0.00 0.00 33.21 4.52 R
3252 3276 2.004017 CGGACCTGTTTATAAGCGCAA 58.996 47.619 11.47 0.00 0.00 4.85 R
4017 4049 3.126858 CAGATTATTCGTTGTGGTGTGGG 59.873 47.826 0.00 0.00 0.00 4.61 R
4051 4084 4.086706 ACTTAGGTTGGGTGTTTGAGAG 57.913 45.455 0.00 0.00 0.00 3.20 R
4922 4968 0.036732 TCCAGCGTCTCTTTGCCATT 59.963 50.000 0.00 0.00 0.00 3.16 R
5981 6048 1.439543 ACAGACTTCCCCAGCTTCTT 58.560 50.000 0.00 0.00 0.00 2.52 R
6858 6965 3.008375 AGAAGTTTCAGTCCTAGCATGCA 59.992 43.478 21.98 5.01 0.00 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
208 209 9.530633 GATAAATCTCAGTCGGTAGTACAAAAT 57.469 33.333 2.06 0.00 0.00 1.82
581 589 1.337728 TGACACGTGCAAGTGGGATAG 60.338 52.381 31.47 10.38 45.80 2.08
672 680 1.526575 CGTGCAAGTGGGATTTGGCT 61.527 55.000 0.00 0.00 0.00 4.75
675 683 1.593265 CAAGTGGGATTTGGCTGGC 59.407 57.895 0.00 0.00 0.00 4.85
759 767 4.481368 AGTTATTCCACGCAACCATCTA 57.519 40.909 0.00 0.00 0.00 1.98
771 779 2.172505 CAACCATCTATGCCACCCACTA 59.827 50.000 0.00 0.00 0.00 2.74
889 897 0.664166 CGCACTGCACAAAATCCCAC 60.664 55.000 1.11 0.00 0.00 4.61
891 899 1.069049 GCACTGCACAAAATCCCACTT 59.931 47.619 0.00 0.00 0.00 3.16
926 934 1.613437 CTCATTCCCACAAACCACCAC 59.387 52.381 0.00 0.00 0.00 4.16
1128 1136 1.075601 TCAAAGGGGTTGAGCTCCAT 58.924 50.000 12.15 0.00 41.47 3.41
1161 1169 0.900182 TGGAGATCGTCTGCACCAGT 60.900 55.000 5.39 0.00 39.98 4.00
1394 1403 8.299570 CCCTGCATATGGTTTATCTGTTTTATC 58.700 37.037 4.56 0.00 0.00 1.75
1594 1606 7.450124 AGTTGATCGACTAGTGAAGTTTCTA 57.550 36.000 14.30 0.00 39.07 2.10
2101 2119 2.838736 AGCGACAAAGAGAAGCTGAAA 58.161 42.857 0.00 0.00 36.73 2.69
2225 2243 1.097547 CAGCGTCATCCACCCATTCC 61.098 60.000 0.00 0.00 0.00 3.01
2325 2343 1.941294 CGAGTACGCAGGAGTAGATGT 59.059 52.381 0.00 0.00 0.00 3.06
2459 2477 5.366186 ACTGGATGAAGATAACATCAGAGCT 59.634 40.000 0.00 0.00 43.84 4.09
2563 2581 3.000041 TGTGATTATGTCGTGCTTGTCC 59.000 45.455 0.00 0.00 0.00 4.02
2566 2584 3.056179 TGATTATGTCGTGCTTGTCCTGA 60.056 43.478 0.00 0.00 0.00 3.86
2750 2768 6.183360 TGCAACTAATAACACAACGTTGTTCT 60.183 34.615 30.49 21.50 39.40 3.01
2827 2848 4.623932 ACTACAAAGAAGCATCAGTCCA 57.376 40.909 0.00 0.00 0.00 4.02
2885 2906 5.103000 CAGTCTACACACAAGTACCATAGC 58.897 45.833 0.00 0.00 0.00 2.97
3116 3140 4.960938 ACAATGCTAGACACTTGAACTCA 58.039 39.130 0.00 0.00 0.00 3.41
3252 3276 3.374402 CGACTGGTGAGCCTCCGT 61.374 66.667 0.00 0.00 35.27 4.69
4033 4066 0.539438 ATGCCCACACCACAACGAAT 60.539 50.000 0.00 0.00 0.00 3.34
4051 4084 8.598075 ACAACGAATAATCTGGTCGTAAAATAC 58.402 33.333 0.00 0.00 46.62 1.89
4176 4209 3.181471 ACATCAAATTTCAAACCCGTGCA 60.181 39.130 0.00 0.00 0.00 4.57
4205 4239 9.051027 GTATGAAATTACAATTCAGTTCACACG 57.949 33.333 0.00 0.00 39.92 4.49
4414 4452 4.336433 CGGAAAAACATCACAGAGCCATAT 59.664 41.667 0.00 0.00 0.00 1.78
4490 4531 7.806180 AGTGGGATTTAGCAGATTGTAAGTAT 58.194 34.615 0.00 0.00 0.00 2.12
4627 4670 2.211410 CCCCACGACCACTACACCA 61.211 63.158 0.00 0.00 0.00 4.17
4672 4716 3.908081 ACCACCGTCGACGCACTT 61.908 61.111 31.73 13.07 38.18 3.16
4685 4729 1.538075 ACGCACTTCAAAAATACCCCG 59.462 47.619 0.00 0.00 0.00 5.73
4751 4795 3.402110 TCCATCTACACTGCACACAAAG 58.598 45.455 0.00 0.00 0.00 2.77
4924 4970 2.978156 TCAAAGGGGTTGAGCTCAAT 57.022 45.000 30.65 13.30 41.47 2.57
4991 5037 0.463204 CGACCAGATGATGAGCAGGT 59.537 55.000 0.00 0.00 0.00 4.00
4992 5038 1.537776 CGACCAGATGATGAGCAGGTC 60.538 57.143 1.86 1.86 41.53 3.85
5183 5229 8.093927 TGTTCATTCATCTGTTGTATCAGTACA 58.906 33.333 0.00 0.00 39.00 2.90
5293 5339 5.876651 ATAGTCTATGAAGTGGATGCACA 57.123 39.130 20.21 0.00 0.00 4.57
5307 5353 6.658816 AGTGGATGCACAATTACATGTTTCTA 59.341 34.615 20.21 0.00 0.00 2.10
5524 5572 4.214971 GGTCCATATCTTGATGCACATGTC 59.785 45.833 0.00 0.00 0.00 3.06
5528 5576 5.763698 CCATATCTTGATGCACATGTCTCTT 59.236 40.000 0.00 0.00 0.00 2.85
5745 5803 7.073265 ACACGGTGTAGTTGAATTTAATTTCG 58.927 34.615 12.96 0.00 0.00 3.46
5926 5993 0.239347 CCAAGCGCCTCAAAGACTTG 59.761 55.000 2.29 0.00 37.94 3.16
5958 6025 6.215845 AGGAGAAATTGTACACATTTGTTGC 58.784 36.000 15.92 11.12 37.15 4.17
5981 6048 1.699083 TCAGCATTGGAGGTGACAAGA 59.301 47.619 0.00 0.00 40.73 3.02
6000 6067 1.349357 GAAGAAGCTGGGGAAGTCTGT 59.651 52.381 0.00 0.00 0.00 3.41
6259 6326 3.498397 AGACAATTGACAACATCGTGACC 59.502 43.478 13.59 0.00 0.00 4.02
6260 6327 3.210227 ACAATTGACAACATCGTGACCA 58.790 40.909 13.59 0.00 0.00 4.02
6335 6403 4.122046 CACGGATGAGATGCATGAAAGTA 58.878 43.478 2.46 0.00 37.34 2.24
6383 6451 6.439636 ACCATATGCTATGTGTGTCCTTAT 57.560 37.500 0.00 0.00 0.00 1.73
6529 6601 7.290110 ACAAGTTTGCTAGCTTCCTATTTTT 57.710 32.000 17.23 0.00 0.00 1.94
6663 6763 3.270877 CAAATAGTAGCCTTGGACGCTT 58.729 45.455 0.00 0.00 37.79 4.68
6820 6927 1.808411 ATTCACGTACTGCAACAGGG 58.192 50.000 0.00 0.00 35.51 4.45
6858 6965 8.411683 CCATCAGTACGTATTTCCTAGTAACTT 58.588 37.037 0.00 0.00 0.00 2.66
7154 7269 5.471797 TCACAAGAAACACAACAGAAAGACA 59.528 36.000 0.00 0.00 0.00 3.41
7161 7276 8.204836 AGAAACACAACAGAAAGACATACTAGT 58.795 33.333 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
208 209 5.358442 ACTGGTGTGTTTGTTTTACTATGCA 59.642 36.000 0.00 0.00 0.00 3.96
279 284 1.361204 TCTGAATTGGGACTGGCAGA 58.639 50.000 23.66 0.00 0.00 4.26
672 680 2.304470 TGTCAAGCTGTACTTATGGCCA 59.696 45.455 8.56 8.56 36.04 5.36
675 683 5.482908 AGTCTTGTCAAGCTGTACTTATGG 58.517 41.667 7.78 0.00 36.04 2.74
759 767 2.137177 AACCGCTTAGTGGGTGGCAT 62.137 55.000 16.78 0.00 37.55 4.40
771 779 0.818040 GTCCCTTGTGTCAACCGCTT 60.818 55.000 0.00 0.00 0.00 4.68
819 827 1.666872 GGGGTCGTGTGTGTAGTGC 60.667 63.158 0.00 0.00 0.00 4.40
889 897 5.372373 GAATGAGGGAGAGGTGGAATAAAG 58.628 45.833 0.00 0.00 0.00 1.85
891 899 3.716872 GGAATGAGGGAGAGGTGGAATAA 59.283 47.826 0.00 0.00 0.00 1.40
926 934 0.962356 AGTGGAAATGGAAGCGGCAG 60.962 55.000 1.45 0.00 0.00 4.85
1128 1136 3.573772 CTCCAGCGTCTCGTTGCCA 62.574 63.158 0.84 0.00 36.79 4.92
1161 1169 0.320073 CGTCGGCCTTTTCTGGTACA 60.320 55.000 0.00 0.00 0.00 2.90
1302 1310 0.753262 ACACCAAGCAGAGTTCGTCT 59.247 50.000 0.00 0.00 35.00 4.18
1566 1578 6.085555 ACTTCACTAGTCGATCAACTTCAA 57.914 37.500 0.00 0.00 28.23 2.69
1715 1729 4.163458 AGAAACCAGTACTTCACCAAGTCA 59.837 41.667 0.00 0.00 42.27 3.41
1728 1742 5.772393 ATGGGATAACACAGAAACCAGTA 57.228 39.130 0.00 0.00 30.90 2.74
1916 1930 4.679373 AGCGATGAATCCATGAAGTAGT 57.321 40.909 0.00 0.00 32.09 2.73
2101 2119 3.181454 GGTTGATCTCCATACCGGACAAT 60.181 47.826 9.46 0.00 39.64 2.71
2225 2243 4.572985 TCTTGTTCTTCATGCCTTTGTG 57.427 40.909 0.00 0.00 0.00 3.33
2357 2375 2.289444 CCCAACCGTCTGTGATGTAGTT 60.289 50.000 0.00 0.00 0.00 2.24
2459 2477 2.836262 TCGGAAGTAAAACGAAGGCAA 58.164 42.857 0.00 0.00 33.21 4.52
2750 2768 4.643334 AGTGTACTGAGTTGTACTGACACA 59.357 41.667 13.15 0.00 42.22 3.72
2807 2825 6.238320 GCTTATGGACTGATGCTTCTTTGTAG 60.238 42.308 0.88 0.00 0.00 2.74
2827 2848 4.887748 AGTGCATTCATAGTAGCGCTTAT 58.112 39.130 18.68 5.30 44.58 1.73
2885 2906 5.049818 GTGTCTTCTGGTGTCATTTTCAGAG 60.050 44.000 0.00 0.00 37.52 3.35
2972 2993 4.631377 TCTTGTCAGTTTTGTGTGAGTCTG 59.369 41.667 0.00 0.00 0.00 3.51
2974 2995 5.122396 AGTTCTTGTCAGTTTTGTGTGAGTC 59.878 40.000 0.00 0.00 0.00 3.36
3092 3116 5.220710 AGTTCAAGTGTCTAGCATTGTCT 57.779 39.130 0.00 0.00 0.00 3.41
3128 3152 4.196971 GTTGTGCGGATTACTAGGGATTT 58.803 43.478 0.00 0.00 0.00 2.17
3201 3225 5.277857 ACACTTACCTGAGCGCTTATATT 57.722 39.130 13.26 0.00 0.00 1.28
3202 3226 4.939052 ACACTTACCTGAGCGCTTATAT 57.061 40.909 13.26 0.24 0.00 0.86
3252 3276 2.004017 CGGACCTGTTTATAAGCGCAA 58.996 47.619 11.47 0.00 0.00 4.85
3594 3622 9.704098 GAGTTTTAGTAGTTGAACTTGAAAGTG 57.296 33.333 1.97 0.00 39.66 3.16
4008 4040 3.324993 GTTGTGGTGTGGGCATATTTTG 58.675 45.455 0.00 0.00 0.00 2.44
4017 4049 3.126858 CAGATTATTCGTTGTGGTGTGGG 59.873 47.826 0.00 0.00 0.00 4.61
4033 4066 9.362539 GTTTGAGAGTATTTTACGACCAGATTA 57.637 33.333 0.00 0.00 0.00 1.75
4051 4084 4.086706 ACTTAGGTTGGGTGTTTGAGAG 57.913 45.455 0.00 0.00 0.00 3.20
4414 4452 5.347342 CATTTTTGCACTGTTTAGGTGACA 58.653 37.500 0.00 0.00 36.89 3.58
4490 4531 6.172630 TGCATTGATTAGTCTTGTCAAGCTA 58.827 36.000 7.78 9.58 35.56 3.32
4672 4716 3.822167 GGAAGACAACGGGGTATTTTTGA 59.178 43.478 0.00 0.00 0.00 2.69
4685 4729 2.027745 TGAGGCAGAGATGGAAGACAAC 60.028 50.000 0.00 0.00 0.00 3.32
4751 4795 3.333804 CTTGGGAGAGAGAAGTTTCTGC 58.666 50.000 0.00 0.00 37.73 4.26
4754 4798 2.616765 GGGCTTGGGAGAGAGAAGTTTC 60.617 54.545 0.00 0.00 0.00 2.78
4813 4859 2.560119 GCCATGGTGACGTTTGGCA 61.560 57.895 14.67 0.00 46.70 4.92
4888 4934 4.201871 CCTTTGAGCGTTTTTGTGTACTCA 60.202 41.667 0.00 0.00 32.62 3.41
4897 4943 2.104170 TCAACCCCTTTGAGCGTTTTT 58.896 42.857 0.00 0.00 39.45 1.94
4922 4968 0.036732 TCCAGCGTCTCTTTGCCATT 59.963 50.000 0.00 0.00 0.00 3.16
4924 4970 1.004560 CTCCAGCGTCTCTTTGCCA 60.005 57.895 0.00 0.00 0.00 4.92
4991 5037 3.797353 GCCGCCCTTCATCCTGGA 61.797 66.667 0.00 0.00 0.00 3.86
5089 5135 0.039074 AGAGTTCCTCGACGCACAAG 60.039 55.000 0.00 0.00 35.36 3.16
5176 5222 8.597662 ATTAAGTTTTTAGCGACTTGTACTGA 57.402 30.769 0.00 0.00 36.79 3.41
5307 5353 6.040842 ACAGTTCCAGAAATGCATGTAACTTT 59.959 34.615 0.00 0.00 39.72 2.66
5392 5440 7.725251 TCAAGTTCAGAAATTAATTTGGTGCT 58.275 30.769 17.98 6.15 0.00 4.40
5476 5524 7.281100 CCTATACCACTTCACCAAAGATCTTTC 59.719 40.741 17.91 0.00 38.44 2.62
5662 5720 5.047092 ACCAAATGCTTCACCAAATTAGAGG 60.047 40.000 0.00 0.00 0.00 3.69
5745 5803 7.498239 AGTTCAGAAACTAGTACAAAAAGTCCC 59.502 37.037 0.00 0.00 43.98 4.46
5926 5993 1.831580 ACAATTTCTCCTCCTGCAGC 58.168 50.000 8.66 0.00 0.00 5.25
5958 6025 2.507484 TGTCACCTCCAATGCTGAAAG 58.493 47.619 0.00 0.00 0.00 2.62
5981 6048 1.439543 ACAGACTTCCCCAGCTTCTT 58.560 50.000 0.00 0.00 0.00 2.52
6000 6067 4.226168 AGTTGTTGGGGTTGATTTCCAAAA 59.774 37.500 0.00 0.00 41.54 2.44
6259 6326 6.271488 TGCTCTTTTGAAATATCCCAACTG 57.729 37.500 0.00 0.00 0.00 3.16
6260 6327 5.420104 CCTGCTCTTTTGAAATATCCCAACT 59.580 40.000 0.00 0.00 0.00 3.16
6335 6403 4.675146 GCTGGTTCAACATAACGAATGCAT 60.675 41.667 0.00 0.00 39.39 3.96
6383 6451 8.220755 AGCAAACTACAAATCTACAACAAGAA 57.779 30.769 0.00 0.00 0.00 2.52
6663 6763 4.703575 ACCGTTCATGTCTAAGCTGTACTA 59.296 41.667 0.00 0.00 0.00 1.82
6820 6927 4.213482 ACGTACTGATGGTTCTTTGCTTTC 59.787 41.667 0.00 0.00 0.00 2.62
6858 6965 3.008375 AGAAGTTTCAGTCCTAGCATGCA 59.992 43.478 21.98 5.01 0.00 3.96
7202 7317 7.807977 AGTTGTACTGAGATTTCAATTGTGT 57.192 32.000 5.13 0.00 31.69 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.