Multiple sequence alignment - TraesCS3B01G210400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G210400 | chr3B | 100.000 | 2779 | 0 | 0 | 1 | 2779 | 246502659 | 246505437 | 0.000000e+00 | 5132.0 |
1 | TraesCS3B01G210400 | chr3B | 97.436 | 39 | 1 | 0 | 1240 | 1278 | 259702050 | 259702012 | 1.790000e-07 | 67.6 |
2 | TraesCS3B01G210400 | chr3B | 90.000 | 50 | 5 | 0 | 47 | 96 | 5899556 | 5899507 | 6.420000e-07 | 65.8 |
3 | TraesCS3B01G210400 | chr3B | 100.000 | 30 | 0 | 0 | 878 | 907 | 707270167 | 707270196 | 3.870000e-04 | 56.5 |
4 | TraesCS3B01G210400 | chr3A | 88.491 | 1173 | 61 | 30 | 362 | 1501 | 208454401 | 208455532 | 0.000000e+00 | 1351.0 |
5 | TraesCS3B01G210400 | chr3A | 88.612 | 922 | 77 | 11 | 1536 | 2443 | 208455540 | 208456447 | 0.000000e+00 | 1096.0 |
6 | TraesCS3B01G210400 | chr3A | 90.154 | 325 | 30 | 1 | 2457 | 2779 | 208456431 | 208456755 | 3.310000e-114 | 422.0 |
7 | TraesCS3B01G210400 | chr3A | 89.068 | 311 | 28 | 4 | 2471 | 2778 | 600067117 | 600066810 | 5.620000e-102 | 381.0 |
8 | TraesCS3B01G210400 | chr3D | 86.525 | 1269 | 103 | 19 | 1539 | 2778 | 170931109 | 170932338 | 0.000000e+00 | 1334.0 |
9 | TraesCS3B01G210400 | chr3D | 87.244 | 878 | 72 | 26 | 100 | 957 | 170929707 | 170930564 | 0.000000e+00 | 965.0 |
10 | TraesCS3B01G210400 | chr3D | 86.257 | 553 | 37 | 22 | 955 | 1501 | 170930593 | 170931112 | 5.200000e-157 | 564.0 |
11 | TraesCS3B01G210400 | chr3D | 83.146 | 89 | 7 | 2 | 1190 | 1278 | 212868911 | 212868991 | 1.070000e-09 | 75.0 |
12 | TraesCS3B01G210400 | chr5D | 90.728 | 302 | 23 | 3 | 2480 | 2779 | 522481257 | 522481555 | 5.580000e-107 | 398.0 |
13 | TraesCS3B01G210400 | chr2D | 88.580 | 324 | 29 | 6 | 2457 | 2778 | 293714939 | 293715256 | 1.210000e-103 | 387.0 |
14 | TraesCS3B01G210400 | chr2D | 83.544 | 79 | 5 | 2 | 1199 | 1277 | 291911397 | 291911467 | 1.790000e-07 | 67.6 |
15 | TraesCS3B01G210400 | chr7D | 88.218 | 331 | 24 | 8 | 2457 | 2779 | 140800357 | 140800034 | 5.620000e-102 | 381.0 |
16 | TraesCS3B01G210400 | chr4B | 87.915 | 331 | 24 | 10 | 2457 | 2779 | 529352858 | 529352536 | 2.610000e-100 | 375.0 |
17 | TraesCS3B01G210400 | chr5A | 87.613 | 331 | 26 | 9 | 2457 | 2779 | 649235977 | 649235654 | 1.220000e-98 | 370.0 |
18 | TraesCS3B01G210400 | chr5A | 89.109 | 303 | 22 | 5 | 2485 | 2779 | 521195350 | 521195649 | 1.570000e-97 | 366.0 |
19 | TraesCS3B01G210400 | chr4D | 87.311 | 331 | 28 | 8 | 2457 | 2779 | 300795282 | 300795606 | 1.570000e-97 | 366.0 |
20 | TraesCS3B01G210400 | chr6B | 87.009 | 331 | 29 | 7 | 2457 | 2779 | 132429241 | 132428917 | 7.320000e-96 | 361.0 |
21 | TraesCS3B01G210400 | chr6B | 100.000 | 39 | 0 | 0 | 1240 | 1278 | 471136077 | 471136115 | 3.840000e-09 | 73.1 |
22 | TraesCS3B01G210400 | chr2A | 88.040 | 301 | 31 | 3 | 2480 | 2778 | 360779572 | 360779869 | 4.400000e-93 | 351.0 |
23 | TraesCS3B01G210400 | chr7A | 97.436 | 39 | 1 | 0 | 1240 | 1278 | 238551311 | 238551273 | 1.790000e-07 | 67.6 |
24 | TraesCS3B01G210400 | chr7A | 97.368 | 38 | 1 | 0 | 1241 | 1278 | 327312285 | 327312322 | 6.420000e-07 | 65.8 |
25 | TraesCS3B01G210400 | chr1D | 97.436 | 39 | 1 | 0 | 60 | 98 | 225696071 | 225696109 | 1.790000e-07 | 67.6 |
26 | TraesCS3B01G210400 | chrUn | 88.679 | 53 | 6 | 0 | 44 | 96 | 34299125 | 34299177 | 6.420000e-07 | 65.8 |
27 | TraesCS3B01G210400 | chrUn | 88.679 | 53 | 6 | 0 | 44 | 96 | 372848289 | 372848341 | 6.420000e-07 | 65.8 |
28 | TraesCS3B01G210400 | chr6A | 97.368 | 38 | 1 | 0 | 1241 | 1278 | 155935681 | 155935718 | 6.420000e-07 | 65.8 |
29 | TraesCS3B01G210400 | chr4A | 81.333 | 75 | 12 | 2 | 266 | 339 | 659820286 | 659820213 | 2.990000e-05 | 60.2 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G210400 | chr3B | 246502659 | 246505437 | 2778 | False | 5132.000000 | 5132 | 100.000000 | 1 | 2779 | 1 | chr3B.!!$F1 | 2778 |
1 | TraesCS3B01G210400 | chr3A | 208454401 | 208456755 | 2354 | False | 956.333333 | 1351 | 89.085667 | 362 | 2779 | 3 | chr3A.!!$F1 | 2417 |
2 | TraesCS3B01G210400 | chr3D | 170929707 | 170932338 | 2631 | False | 954.333333 | 1334 | 86.675333 | 100 | 2778 | 3 | chr3D.!!$F2 | 2678 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
857 | 875 | 0.303493 | CCGTGTGAACAGTGTTTCGG | 59.697 | 55.0 | 10.45 | 16.57 | 0.0 | 4.3 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2144 | 2240 | 0.107654 | AGAATCCCGCCCGAAAAGAG | 60.108 | 55.0 | 0.0 | 0.0 | 0.0 | 2.85 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
34 | 35 | 4.946255 | CGTTAATGACGCTGCTATTATGG | 58.054 | 43.478 | 0.00 | 0.00 | 45.86 | 2.74 |
35 | 36 | 4.666655 | CGTTAATGACGCTGCTATTATGGC | 60.667 | 45.833 | 0.00 | 0.00 | 45.86 | 4.40 |
40 | 41 | 1.502231 | CGCTGCTATTATGGCGTTCT | 58.498 | 50.000 | 0.00 | 0.00 | 42.23 | 3.01 |
41 | 42 | 1.457303 | CGCTGCTATTATGGCGTTCTC | 59.543 | 52.381 | 0.00 | 0.00 | 42.23 | 2.87 |
42 | 43 | 2.483876 | GCTGCTATTATGGCGTTCTCA | 58.516 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
43 | 44 | 2.221981 | GCTGCTATTATGGCGTTCTCAC | 59.778 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
44 | 45 | 3.457234 | CTGCTATTATGGCGTTCTCACA | 58.543 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
45 | 46 | 4.060900 | CTGCTATTATGGCGTTCTCACAT | 58.939 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
46 | 47 | 5.208463 | TGCTATTATGGCGTTCTCACATA | 57.792 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
47 | 48 | 5.606505 | TGCTATTATGGCGTTCTCACATAA | 58.393 | 37.500 | 0.00 | 0.00 | 40.23 | 1.90 |
48 | 49 | 5.696270 | TGCTATTATGGCGTTCTCACATAAG | 59.304 | 40.000 | 0.00 | 0.00 | 39.56 | 1.73 |
49 | 50 | 5.696724 | GCTATTATGGCGTTCTCACATAAGT | 59.303 | 40.000 | 0.00 | 0.00 | 39.56 | 2.24 |
51 | 52 | 2.831685 | TGGCGTTCTCACATAAGTGT | 57.168 | 45.000 | 0.00 | 0.00 | 46.01 | 3.55 |
52 | 53 | 2.683968 | TGGCGTTCTCACATAAGTGTC | 58.316 | 47.619 | 0.00 | 0.00 | 46.01 | 3.67 |
53 | 54 | 2.000447 | GGCGTTCTCACATAAGTGTCC | 59.000 | 52.381 | 0.00 | 0.00 | 46.01 | 4.02 |
54 | 55 | 2.353803 | GGCGTTCTCACATAAGTGTCCT | 60.354 | 50.000 | 0.00 | 0.00 | 46.01 | 3.85 |
55 | 56 | 3.326747 | GCGTTCTCACATAAGTGTCCTT | 58.673 | 45.455 | 0.00 | 0.00 | 46.01 | 3.36 |
56 | 57 | 3.746492 | GCGTTCTCACATAAGTGTCCTTT | 59.254 | 43.478 | 0.00 | 0.00 | 46.01 | 3.11 |
57 | 58 | 4.213482 | GCGTTCTCACATAAGTGTCCTTTT | 59.787 | 41.667 | 0.00 | 0.00 | 46.01 | 2.27 |
58 | 59 | 5.277828 | GCGTTCTCACATAAGTGTCCTTTTT | 60.278 | 40.000 | 0.00 | 0.00 | 46.01 | 1.94 |
59 | 60 | 6.073440 | GCGTTCTCACATAAGTGTCCTTTTTA | 60.073 | 38.462 | 0.00 | 0.00 | 46.01 | 1.52 |
60 | 61 | 7.510630 | CGTTCTCACATAAGTGTCCTTTTTAG | 58.489 | 38.462 | 0.00 | 0.00 | 46.01 | 1.85 |
61 | 62 | 7.170998 | CGTTCTCACATAAGTGTCCTTTTTAGT | 59.829 | 37.037 | 0.00 | 0.00 | 46.01 | 2.24 |
62 | 63 | 8.837389 | GTTCTCACATAAGTGTCCTTTTTAGTT | 58.163 | 33.333 | 0.00 | 0.00 | 46.01 | 2.24 |
63 | 64 | 8.603242 | TCTCACATAAGTGTCCTTTTTAGTTC | 57.397 | 34.615 | 0.00 | 0.00 | 46.01 | 3.01 |
64 | 65 | 7.384115 | TCTCACATAAGTGTCCTTTTTAGTTCG | 59.616 | 37.037 | 0.00 | 0.00 | 46.01 | 3.95 |
65 | 66 | 7.211573 | TCACATAAGTGTCCTTTTTAGTTCGA | 58.788 | 34.615 | 0.00 | 0.00 | 46.01 | 3.71 |
66 | 67 | 7.384115 | TCACATAAGTGTCCTTTTTAGTTCGAG | 59.616 | 37.037 | 0.00 | 0.00 | 46.01 | 4.04 |
67 | 68 | 6.147328 | ACATAAGTGTCCTTTTTAGTTCGAGC | 59.853 | 38.462 | 0.00 | 0.00 | 31.41 | 5.03 |
68 | 69 | 4.338379 | AGTGTCCTTTTTAGTTCGAGCT | 57.662 | 40.909 | 7.07 | 7.07 | 0.00 | 4.09 |
69 | 70 | 4.308265 | AGTGTCCTTTTTAGTTCGAGCTC | 58.692 | 43.478 | 4.56 | 2.73 | 0.00 | 4.09 |
70 | 71 | 4.056050 | GTGTCCTTTTTAGTTCGAGCTCA | 58.944 | 43.478 | 15.40 | 0.00 | 0.00 | 4.26 |
71 | 72 | 4.691216 | GTGTCCTTTTTAGTTCGAGCTCAT | 59.309 | 41.667 | 15.40 | 0.00 | 0.00 | 2.90 |
72 | 73 | 5.867716 | GTGTCCTTTTTAGTTCGAGCTCATA | 59.132 | 40.000 | 15.40 | 0.00 | 0.00 | 2.15 |
73 | 74 | 6.535508 | GTGTCCTTTTTAGTTCGAGCTCATAT | 59.464 | 38.462 | 15.40 | 0.00 | 0.00 | 1.78 |
74 | 75 | 6.535150 | TGTCCTTTTTAGTTCGAGCTCATATG | 59.465 | 38.462 | 15.40 | 0.00 | 0.00 | 1.78 |
75 | 76 | 6.757010 | GTCCTTTTTAGTTCGAGCTCATATGA | 59.243 | 38.462 | 15.40 | 5.07 | 0.00 | 2.15 |
76 | 77 | 6.980978 | TCCTTTTTAGTTCGAGCTCATATGAG | 59.019 | 38.462 | 25.64 | 25.64 | 44.75 | 2.90 |
90 | 91 | 6.922247 | CTCATATGAGCTTGAGTGAACAAT | 57.078 | 37.500 | 19.47 | 0.00 | 35.66 | 2.71 |
92 | 93 | 8.429493 | CTCATATGAGCTTGAGTGAACAATAA | 57.571 | 34.615 | 19.47 | 0.00 | 35.66 | 1.40 |
93 | 94 | 8.791327 | TCATATGAGCTTGAGTGAACAATAAA | 57.209 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
94 | 95 | 9.230122 | TCATATGAGCTTGAGTGAACAATAAAA | 57.770 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
97 | 98 | 6.913170 | TGAGCTTGAGTGAACAATAAAATCC | 58.087 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
98 | 99 | 6.071952 | TGAGCTTGAGTGAACAATAAAATCCC | 60.072 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
99 | 100 | 5.185828 | AGCTTGAGTGAACAATAAAATCCCC | 59.814 | 40.000 | 0.00 | 0.00 | 0.00 | 4.81 |
100 | 101 | 5.624509 | GCTTGAGTGAACAATAAAATCCCCC | 60.625 | 44.000 | 0.00 | 0.00 | 0.00 | 5.40 |
101 | 102 | 5.004361 | TGAGTGAACAATAAAATCCCCCA | 57.996 | 39.130 | 0.00 | 0.00 | 0.00 | 4.96 |
102 | 103 | 5.398236 | TGAGTGAACAATAAAATCCCCCAA | 58.602 | 37.500 | 0.00 | 0.00 | 0.00 | 4.12 |
103 | 104 | 5.841237 | TGAGTGAACAATAAAATCCCCCAAA | 59.159 | 36.000 | 0.00 | 0.00 | 0.00 | 3.28 |
104 | 105 | 6.327626 | TGAGTGAACAATAAAATCCCCCAAAA | 59.672 | 34.615 | 0.00 | 0.00 | 0.00 | 2.44 |
105 | 106 | 7.142995 | AGTGAACAATAAAATCCCCCAAAAA | 57.857 | 32.000 | 0.00 | 0.00 | 0.00 | 1.94 |
167 | 168 | 8.245701 | TGTGACAAAGTTTGGTAAATGTTTTC | 57.754 | 30.769 | 19.45 | 4.84 | 34.12 | 2.29 |
169 | 170 | 8.379902 | GTGACAAAGTTTGGTAAATGTTTTCAG | 58.620 | 33.333 | 19.45 | 0.00 | 34.12 | 3.02 |
172 | 173 | 6.902224 | AAGTTTGGTAAATGTTTTCAGTGC | 57.098 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
180 | 181 | 3.756933 | ATGTTTTCAGTGCCTTGCAAT | 57.243 | 38.095 | 0.00 | 0.00 | 41.47 | 3.56 |
190 | 191 | 2.028748 | GTGCCTTGCAATGTTTCATCCT | 60.029 | 45.455 | 0.00 | 0.00 | 41.47 | 3.24 |
194 | 195 | 4.800249 | GCCTTGCAATGTTTCATCCTGAAA | 60.800 | 41.667 | 0.00 | 0.00 | 43.37 | 2.69 |
195 | 196 | 5.484715 | CCTTGCAATGTTTCATCCTGAAAT | 58.515 | 37.500 | 0.00 | 0.00 | 46.55 | 2.17 |
197 | 198 | 5.725325 | TGCAATGTTTCATCCTGAAATGA | 57.275 | 34.783 | 5.67 | 0.00 | 46.55 | 2.57 |
198 | 199 | 5.472148 | TGCAATGTTTCATCCTGAAATGAC | 58.528 | 37.500 | 5.67 | 0.00 | 46.55 | 3.06 |
199 | 200 | 5.010820 | TGCAATGTTTCATCCTGAAATGACA | 59.989 | 36.000 | 5.67 | 1.36 | 46.55 | 3.58 |
201 | 202 | 7.093858 | TGCAATGTTTCATCCTGAAATGACATA | 60.094 | 33.333 | 5.67 | 0.00 | 46.55 | 2.29 |
202 | 203 | 7.221452 | GCAATGTTTCATCCTGAAATGACATAC | 59.779 | 37.037 | 5.67 | 0.28 | 46.55 | 2.39 |
203 | 204 | 6.757897 | TGTTTCATCCTGAAATGACATACC | 57.242 | 37.500 | 5.67 | 0.00 | 46.55 | 2.73 |
204 | 205 | 6.484288 | TGTTTCATCCTGAAATGACATACCT | 58.516 | 36.000 | 5.67 | 0.00 | 46.55 | 3.08 |
206 | 207 | 7.770433 | TGTTTCATCCTGAAATGACATACCTAG | 59.230 | 37.037 | 5.67 | 0.00 | 46.55 | 3.02 |
211 | 212 | 7.113658 | TCCTGAAATGACATACCTAGAAGTC | 57.886 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
218 | 219 | 2.165845 | ACATACCTAGAAGTCGTGGCAC | 59.834 | 50.000 | 7.79 | 7.79 | 0.00 | 5.01 |
225 | 226 | 2.365582 | AGAAGTCGTGGCACAAAAACT | 58.634 | 42.857 | 19.09 | 11.72 | 44.16 | 2.66 |
226 | 227 | 2.097466 | AGAAGTCGTGGCACAAAAACTG | 59.903 | 45.455 | 19.09 | 0.00 | 44.16 | 3.16 |
227 | 228 | 0.738389 | AGTCGTGGCACAAAAACTGG | 59.262 | 50.000 | 19.09 | 0.00 | 44.16 | 4.00 |
275 | 276 | 8.568732 | AGTGTTGATTTTGTATTTTTACCACG | 57.431 | 30.769 | 0.00 | 0.00 | 0.00 | 4.94 |
280 | 281 | 9.453325 | TTGATTTTGTATTTTTACCACGACTTC | 57.547 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
299 | 300 | 6.313658 | CGACTTCCACAAATGTCATTCTATGA | 59.686 | 38.462 | 0.00 | 0.00 | 36.84 | 2.15 |
318 | 319 | 8.619146 | TCTATGACGAAATTTTGCAATCATTC | 57.381 | 30.769 | 13.09 | 10.39 | 0.00 | 2.67 |
329 | 331 | 9.976255 | AATTTTGCAATCATTCGAAACATTATG | 57.024 | 25.926 | 0.00 | 0.00 | 0.00 | 1.90 |
395 | 402 | 9.840427 | AATATTTTCAGATTTTACTGTTCACCG | 57.160 | 29.630 | 0.00 | 0.00 | 38.79 | 4.94 |
399 | 406 | 3.125316 | CAGATTTTACTGTTCACCGGCTC | 59.875 | 47.826 | 0.00 | 0.00 | 33.73 | 4.70 |
408 | 415 | 3.753434 | CACCGGCTCGAGCTCAGT | 61.753 | 66.667 | 34.46 | 25.25 | 41.70 | 3.41 |
414 | 421 | 1.066303 | CGGCTCGAGCTCAGTTAATCT | 59.934 | 52.381 | 34.46 | 0.00 | 41.70 | 2.40 |
416 | 423 | 2.468831 | GCTCGAGCTCAGTTAATCTGG | 58.531 | 52.381 | 29.88 | 0.00 | 43.76 | 3.86 |
534 | 542 | 4.893608 | TCGAATCATGAGACCTGACAAAA | 58.106 | 39.130 | 0.09 | 0.00 | 0.00 | 2.44 |
535 | 543 | 5.304778 | TCGAATCATGAGACCTGACAAAAA | 58.695 | 37.500 | 0.09 | 0.00 | 0.00 | 1.94 |
561 | 571 | 1.728971 | GGTTTCTCTGTGTGATCTGCG | 59.271 | 52.381 | 0.00 | 0.00 | 0.00 | 5.18 |
563 | 573 | 1.256812 | TTCTCTGTGTGATCTGCGGA | 58.743 | 50.000 | 0.00 | 0.00 | 0.00 | 5.54 |
570 | 580 | 1.224592 | GTGATCTGCGGAACCCCAT | 59.775 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
634 | 650 | 0.758123 | AGCAGATCCTAAGCTGGAGC | 59.242 | 55.000 | 0.11 | 0.11 | 42.38 | 4.70 |
806 | 824 | 4.384247 | CAGAGCGAAAGAGGCGATAAATAG | 59.616 | 45.833 | 0.00 | 0.00 | 35.00 | 1.73 |
812 | 830 | 1.687123 | AGAGGCGATAAATAGTGCGGT | 59.313 | 47.619 | 0.00 | 0.00 | 0.00 | 5.68 |
821 | 839 | 0.398696 | AATAGTGCGGTGGTTGACCA | 59.601 | 50.000 | 0.00 | 0.00 | 46.55 | 4.02 |
853 | 871 | 1.151777 | CGCTCCGTGTGAACAGTGTT | 61.152 | 55.000 | 8.61 | 8.61 | 0.00 | 3.32 |
856 | 874 | 1.257936 | CTCCGTGTGAACAGTGTTTCG | 59.742 | 52.381 | 10.45 | 12.13 | 0.00 | 3.46 |
857 | 875 | 0.303493 | CCGTGTGAACAGTGTTTCGG | 59.697 | 55.000 | 10.45 | 16.57 | 0.00 | 4.30 |
895 | 920 | 4.030178 | CGTTTGTACGTCGTTTGTTTGTTC | 60.030 | 41.667 | 1.78 | 0.00 | 42.72 | 3.18 |
992 | 1054 | 1.136984 | CACTCCTACTCGTCGCACC | 59.863 | 63.158 | 0.00 | 0.00 | 0.00 | 5.01 |
1083 | 1147 | 1.927710 | GCCAAGCAAAGAACGAAGCAG | 60.928 | 52.381 | 0.00 | 0.00 | 0.00 | 4.24 |
1144 | 1214 | 3.036959 | GAGGGAGGGAGGGAGGGA | 61.037 | 72.222 | 0.00 | 0.00 | 0.00 | 4.20 |
1145 | 1215 | 3.039526 | AGGGAGGGAGGGAGGGAG | 61.040 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
1146 | 1216 | 4.179599 | GGGAGGGAGGGAGGGAGG | 62.180 | 77.778 | 0.00 | 0.00 | 0.00 | 4.30 |
1147 | 1217 | 4.179599 | GGAGGGAGGGAGGGAGGG | 62.180 | 77.778 | 0.00 | 0.00 | 0.00 | 4.30 |
1148 | 1218 | 3.036959 | GAGGGAGGGAGGGAGGGA | 61.037 | 72.222 | 0.00 | 0.00 | 0.00 | 4.20 |
1149 | 1219 | 3.039526 | AGGGAGGGAGGGAGGGAG | 61.040 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
1150 | 1220 | 4.179599 | GGGAGGGAGGGAGGGAGG | 62.180 | 77.778 | 0.00 | 0.00 | 0.00 | 4.30 |
1151 | 1221 | 4.179599 | GGAGGGAGGGAGGGAGGG | 62.180 | 77.778 | 0.00 | 0.00 | 0.00 | 4.30 |
1152 | 1222 | 3.036959 | GAGGGAGGGAGGGAGGGA | 61.037 | 72.222 | 0.00 | 0.00 | 0.00 | 4.20 |
1153 | 1223 | 3.039526 | AGGGAGGGAGGGAGGGAG | 61.040 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
1154 | 1224 | 4.179599 | GGGAGGGAGGGAGGGAGG | 62.180 | 77.778 | 0.00 | 0.00 | 0.00 | 4.30 |
1155 | 1225 | 4.179599 | GGAGGGAGGGAGGGAGGG | 62.180 | 77.778 | 0.00 | 0.00 | 0.00 | 4.30 |
1156 | 1226 | 3.036959 | GAGGGAGGGAGGGAGGGA | 61.037 | 72.222 | 0.00 | 0.00 | 0.00 | 4.20 |
1157 | 1227 | 3.039526 | AGGGAGGGAGGGAGGGAG | 61.040 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
1158 | 1228 | 3.036959 | GGGAGGGAGGGAGGGAGA | 61.037 | 72.222 | 0.00 | 0.00 | 0.00 | 3.71 |
1159 | 1229 | 2.612251 | GGAGGGAGGGAGGGAGAG | 59.388 | 72.222 | 0.00 | 0.00 | 0.00 | 3.20 |
1160 | 1230 | 2.015726 | GGAGGGAGGGAGGGAGAGA | 61.016 | 68.421 | 0.00 | 0.00 | 0.00 | 3.10 |
1161 | 1231 | 1.541672 | GAGGGAGGGAGGGAGAGAG | 59.458 | 68.421 | 0.00 | 0.00 | 0.00 | 3.20 |
1162 | 1232 | 0.996762 | GAGGGAGGGAGGGAGAGAGA | 60.997 | 65.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1163 | 1233 | 0.998945 | AGGGAGGGAGGGAGAGAGAG | 60.999 | 65.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1164 | 1234 | 0.996762 | GGGAGGGAGGGAGAGAGAGA | 60.997 | 65.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1165 | 1235 | 0.478507 | GGAGGGAGGGAGAGAGAGAG | 59.521 | 65.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1166 | 1236 | 0.478507 | GAGGGAGGGAGAGAGAGAGG | 59.521 | 65.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1167 | 1237 | 0.047176 | AGGGAGGGAGAGAGAGAGGA | 59.953 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1168 | 1238 | 1.158007 | GGGAGGGAGAGAGAGAGGAT | 58.842 | 60.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1169 | 1239 | 1.503347 | GGGAGGGAGAGAGAGAGGATT | 59.497 | 57.143 | 0.00 | 0.00 | 0.00 | 3.01 |
1170 | 1240 | 2.490902 | GGGAGGGAGAGAGAGAGGATTC | 60.491 | 59.091 | 0.00 | 0.00 | 0.00 | 2.52 |
1178 | 1248 | 3.111484 | GAGAGAGAGGATTCCCTGGTTT | 58.889 | 50.000 | 0.00 | 0.00 | 44.53 | 3.27 |
1474 | 1544 | 2.523902 | CAGGTTTGCCTTGCCCCA | 60.524 | 61.111 | 0.00 | 0.00 | 44.18 | 4.96 |
1501 | 1571 | 3.403038 | CATCCCCACCGATTGATTAGTC | 58.597 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1503 | 1573 | 3.918566 | TCCCCACCGATTGATTAGTCTA | 58.081 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
1504 | 1574 | 3.895656 | TCCCCACCGATTGATTAGTCTAG | 59.104 | 47.826 | 0.00 | 0.00 | 0.00 | 2.43 |
1505 | 1575 | 3.006967 | CCCCACCGATTGATTAGTCTAGG | 59.993 | 52.174 | 0.00 | 0.00 | 0.00 | 3.02 |
1508 | 1578 | 4.827835 | CCACCGATTGATTAGTCTAGGAGA | 59.172 | 45.833 | 0.00 | 0.00 | 0.00 | 3.71 |
1509 | 1579 | 5.302059 | CCACCGATTGATTAGTCTAGGAGAA | 59.698 | 44.000 | 0.00 | 0.00 | 0.00 | 2.87 |
1510 | 1580 | 6.442952 | CACCGATTGATTAGTCTAGGAGAAG | 58.557 | 44.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1511 | 1581 | 6.263392 | CACCGATTGATTAGTCTAGGAGAAGA | 59.737 | 42.308 | 0.00 | 0.00 | 0.00 | 2.87 |
1512 | 1582 | 6.488683 | ACCGATTGATTAGTCTAGGAGAAGAG | 59.511 | 42.308 | 0.00 | 0.00 | 0.00 | 2.85 |
1513 | 1583 | 6.712998 | CCGATTGATTAGTCTAGGAGAAGAGA | 59.287 | 42.308 | 0.00 | 0.00 | 0.00 | 3.10 |
1514 | 1584 | 7.229707 | CCGATTGATTAGTCTAGGAGAAGAGAA | 59.770 | 40.741 | 0.00 | 0.00 | 0.00 | 2.87 |
1515 | 1585 | 8.625651 | CGATTGATTAGTCTAGGAGAAGAGAAA | 58.374 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
1518 | 1588 | 7.763356 | TGATTAGTCTAGGAGAAGAGAAAACG | 58.237 | 38.462 | 0.00 | 0.00 | 0.00 | 3.60 |
1519 | 1589 | 4.443913 | AGTCTAGGAGAAGAGAAAACGC | 57.556 | 45.455 | 0.00 | 0.00 | 0.00 | 4.84 |
1520 | 1590 | 4.083565 | AGTCTAGGAGAAGAGAAAACGCT | 58.916 | 43.478 | 0.00 | 0.00 | 0.00 | 5.07 |
1521 | 1591 | 4.157105 | AGTCTAGGAGAAGAGAAAACGCTC | 59.843 | 45.833 | 0.00 | 0.00 | 35.11 | 5.03 |
1522 | 1592 | 4.157105 | GTCTAGGAGAAGAGAAAACGCTCT | 59.843 | 45.833 | 0.00 | 0.00 | 46.81 | 4.09 |
1523 | 1593 | 5.354792 | GTCTAGGAGAAGAGAAAACGCTCTA | 59.645 | 44.000 | 0.00 | 0.00 | 44.18 | 2.43 |
1524 | 1594 | 4.443913 | AGGAGAAGAGAAAACGCTCTAC | 57.556 | 45.455 | 0.00 | 0.00 | 44.18 | 2.59 |
1525 | 1595 | 3.119779 | AGGAGAAGAGAAAACGCTCTACG | 60.120 | 47.826 | 0.00 | 0.00 | 44.18 | 3.51 |
1536 | 1606 | 1.868469 | CGCTCTACGCTACTCCTAGT | 58.132 | 55.000 | 0.00 | 0.00 | 36.13 | 2.57 |
1537 | 1607 | 3.023946 | CGCTCTACGCTACTCCTAGTA | 57.976 | 52.381 | 0.00 | 0.00 | 36.13 | 1.82 |
1546 | 1616 | 3.190953 | CGCTACTCCTAGTATACTTGCCC | 59.809 | 52.174 | 11.40 | 0.00 | 29.08 | 5.36 |
1600 | 1670 | 3.754965 | TGGAGTGGAGATCAACCTTTTG | 58.245 | 45.455 | 9.71 | 0.00 | 0.00 | 2.44 |
1613 | 1683 | 3.982576 | ACCTTTTGTGTTTCATCCGTC | 57.017 | 42.857 | 0.00 | 0.00 | 0.00 | 4.79 |
1628 | 1698 | 4.887655 | TCATCCGTCGTATATATGCAGGAT | 59.112 | 41.667 | 17.89 | 17.89 | 37.70 | 3.24 |
1700 | 1770 | 2.044650 | CGAGGACCGGTGAGGGTA | 60.045 | 66.667 | 14.63 | 0.00 | 46.96 | 3.69 |
1712 | 1782 | 2.188817 | GTGAGGGTAGTGATGGAGGTT | 58.811 | 52.381 | 0.00 | 0.00 | 0.00 | 3.50 |
1983 | 2064 | 2.661979 | CGTAGCTTCGCTTTTCGCTTTT | 60.662 | 45.455 | 0.00 | 0.00 | 40.44 | 2.27 |
1985 | 2066 | 1.053048 | GCTTCGCTTTTCGCTTTTCC | 58.947 | 50.000 | 0.00 | 0.00 | 38.27 | 3.13 |
1986 | 2067 | 1.686464 | CTTCGCTTTTCGCTTTTCCC | 58.314 | 50.000 | 0.00 | 0.00 | 38.27 | 3.97 |
1987 | 2068 | 1.266989 | CTTCGCTTTTCGCTTTTCCCT | 59.733 | 47.619 | 0.00 | 0.00 | 38.27 | 4.20 |
1988 | 2069 | 1.314730 | TCGCTTTTCGCTTTTCCCTT | 58.685 | 45.000 | 0.00 | 0.00 | 38.27 | 3.95 |
1990 | 2071 | 2.051423 | CGCTTTTCGCTTTTCCCTTTC | 58.949 | 47.619 | 0.00 | 0.00 | 36.13 | 2.62 |
1991 | 2072 | 2.404215 | GCTTTTCGCTTTTCCCTTTCC | 58.596 | 47.619 | 0.00 | 0.00 | 35.14 | 3.13 |
1992 | 2073 | 2.035961 | GCTTTTCGCTTTTCCCTTTCCT | 59.964 | 45.455 | 0.00 | 0.00 | 35.14 | 3.36 |
1993 | 2074 | 3.254903 | GCTTTTCGCTTTTCCCTTTCCTA | 59.745 | 43.478 | 0.00 | 0.00 | 35.14 | 2.94 |
1994 | 2075 | 4.795268 | CTTTTCGCTTTTCCCTTTCCTAC | 58.205 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
1995 | 2076 | 2.088950 | TCGCTTTTCCCTTTCCTACG | 57.911 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1996 | 2077 | 1.345415 | TCGCTTTTCCCTTTCCTACGT | 59.655 | 47.619 | 0.00 | 0.00 | 0.00 | 3.57 |
1997 | 2078 | 2.148768 | CGCTTTTCCCTTTCCTACGTT | 58.851 | 47.619 | 0.00 | 0.00 | 0.00 | 3.99 |
1998 | 2079 | 2.095919 | CGCTTTTCCCTTTCCTACGTTG | 60.096 | 50.000 | 0.00 | 0.00 | 0.00 | 4.10 |
1999 | 2080 | 3.143728 | GCTTTTCCCTTTCCTACGTTGA | 58.856 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
2000 | 2081 | 3.756963 | GCTTTTCCCTTTCCTACGTTGAT | 59.243 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
2076 | 2172 | 1.537202 | GCTGGACCTGAACATTGTGAC | 59.463 | 52.381 | 1.91 | 0.00 | 0.00 | 3.67 |
2144 | 2240 | 1.009675 | CGCATGTTTATGGCCGAGC | 60.010 | 57.895 | 0.00 | 0.00 | 34.79 | 5.03 |
2152 | 2248 | 1.651987 | TTATGGCCGAGCTCTTTTCG | 58.348 | 50.000 | 12.85 | 0.00 | 37.78 | 3.46 |
2176 | 2279 | 3.378427 | GCGGGATTCTGCAGAACTAAAAT | 59.622 | 43.478 | 30.66 | 14.43 | 44.43 | 1.82 |
2177 | 2280 | 4.142381 | GCGGGATTCTGCAGAACTAAAATT | 60.142 | 41.667 | 30.66 | 13.65 | 44.43 | 1.82 |
2178 | 2281 | 5.622233 | GCGGGATTCTGCAGAACTAAAATTT | 60.622 | 40.000 | 30.66 | 12.88 | 44.43 | 1.82 |
2181 | 2284 | 8.026607 | CGGGATTCTGCAGAACTAAAATTTTTA | 58.973 | 33.333 | 30.66 | 4.74 | 36.80 | 1.52 |
2211 | 2314 | 3.954200 | TCTGCTTTCCACATAATCTGCA | 58.046 | 40.909 | 0.00 | 0.00 | 0.00 | 4.41 |
2217 | 2320 | 3.165058 | TCCACATAATCTGCAGTCGAC | 57.835 | 47.619 | 14.67 | 7.70 | 0.00 | 4.20 |
2234 | 2337 | 5.347364 | CAGTCGACTTCTTTTCTGAGATTCC | 59.653 | 44.000 | 17.26 | 0.00 | 0.00 | 3.01 |
2258 | 2361 | 8.160765 | TCCAGTTTAAGATTGTGGATTCAGTTA | 58.839 | 33.333 | 0.00 | 0.00 | 32.21 | 2.24 |
2271 | 2374 | 4.500477 | GGATTCAGTTATGCGTTGAAATGC | 59.500 | 41.667 | 0.14 | 0.14 | 41.27 | 3.56 |
2272 | 2375 | 3.485947 | TCAGTTATGCGTTGAAATGCC | 57.514 | 42.857 | 4.85 | 0.00 | 40.18 | 4.40 |
2275 | 2378 | 1.919918 | GTTATGCGTTGAAATGCCTGC | 59.080 | 47.619 | 4.85 | 0.00 | 40.18 | 4.85 |
2281 | 2385 | 2.584791 | CGTTGAAATGCCTGCAAGTAC | 58.415 | 47.619 | 0.00 | 0.00 | 0.00 | 2.73 |
2300 | 2404 | 7.573283 | GCAAGTACCCTTAGACAGAAATTGTTC | 60.573 | 40.741 | 0.00 | 0.00 | 41.05 | 3.18 |
2305 | 2409 | 5.065218 | CCCTTAGACAGAAATTGTTCGATGG | 59.935 | 44.000 | 0.00 | 0.00 | 41.05 | 3.51 |
2307 | 2411 | 6.183360 | CCTTAGACAGAAATTGTTCGATGGAC | 60.183 | 42.308 | 0.00 | 0.00 | 41.05 | 4.02 |
2352 | 2456 | 9.000486 | TCGAATAGTATCTTGTCGAATATGAGT | 58.000 | 33.333 | 2.85 | 0.00 | 37.75 | 3.41 |
2353 | 2457 | 9.056306 | CGAATAGTATCTTGTCGAATATGAGTG | 57.944 | 37.037 | 0.00 | 0.00 | 33.63 | 3.51 |
2368 | 2472 | 7.464045 | CGAATATGAGTGCGAAAGTGATTTACA | 60.464 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
2433 | 2541 | 3.677596 | AGTTTTGTTCGTTGCAAAAGTGG | 59.322 | 39.130 | 0.00 | 0.00 | 43.59 | 4.00 |
2435 | 2543 | 0.179124 | TGTTCGTTGCAAAAGTGGGC | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
2437 | 2545 | 1.377366 | TTCGTTGCAAAAGTGGGCGA | 61.377 | 50.000 | 0.00 | 0.58 | 0.00 | 5.54 |
2438 | 2546 | 1.064946 | CGTTGCAAAAGTGGGCGAA | 59.935 | 52.632 | 0.00 | 0.00 | 0.00 | 4.70 |
2439 | 2547 | 1.206115 | CGTTGCAAAAGTGGGCGAAC | 61.206 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2440 | 2548 | 0.102300 | GTTGCAAAAGTGGGCGAACT | 59.898 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2441 | 2549 | 1.335496 | GTTGCAAAAGTGGGCGAACTA | 59.665 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
2442 | 2550 | 1.681538 | TGCAAAAGTGGGCGAACTAA | 58.318 | 45.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2443 | 2551 | 1.606668 | TGCAAAAGTGGGCGAACTAAG | 59.393 | 47.619 | 0.00 | 0.00 | 0.00 | 2.18 |
2444 | 2552 | 1.607148 | GCAAAAGTGGGCGAACTAAGT | 59.393 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
2445 | 2553 | 2.034179 | GCAAAAGTGGGCGAACTAAGTT | 59.966 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
2446 | 2554 | 3.852205 | GCAAAAGTGGGCGAACTAAGTTC | 60.852 | 47.826 | 0.00 | 0.00 | 38.97 | 3.01 |
2447 | 2555 | 2.922740 | AAGTGGGCGAACTAAGTTCA | 57.077 | 45.000 | 0.00 | 0.00 | 42.05 | 3.18 |
2448 | 2556 | 2.922740 | AGTGGGCGAACTAAGTTCAA | 57.077 | 45.000 | 0.00 | 0.00 | 42.05 | 2.69 |
2449 | 2557 | 3.202829 | AGTGGGCGAACTAAGTTCAAA | 57.797 | 42.857 | 0.00 | 0.00 | 42.05 | 2.69 |
2450 | 2558 | 3.547746 | AGTGGGCGAACTAAGTTCAAAA | 58.452 | 40.909 | 0.00 | 0.00 | 42.05 | 2.44 |
2451 | 2559 | 3.949113 | AGTGGGCGAACTAAGTTCAAAAA | 59.051 | 39.130 | 0.00 | 0.00 | 42.05 | 1.94 |
2474 | 2582 | 6.838198 | AAAAGAAAAATGGGCGAACTAAAC | 57.162 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
2536 | 2646 | 1.424403 | CTCGCGTGTTGTTCATGGTA | 58.576 | 50.000 | 5.77 | 0.00 | 33.96 | 3.25 |
2550 | 2660 | 7.135591 | TGTTCATGGTACCATCATCATCTTA | 57.864 | 36.000 | 24.99 | 0.00 | 33.90 | 2.10 |
2580 | 2690 | 1.134340 | AGTGTTGGCACCTGTAAACGA | 60.134 | 47.619 | 0.00 | 0.00 | 46.35 | 3.85 |
2644 | 2754 | 2.068519 | TGCTCATCACGTAACTTGCTG | 58.931 | 47.619 | 0.00 | 0.00 | 0.00 | 4.41 |
2648 | 2758 | 3.925379 | TCATCACGTAACTTGCTGTCAT | 58.075 | 40.909 | 0.00 | 0.00 | 0.00 | 3.06 |
2723 | 2833 | 4.560919 | CGAGTTTATACCCAGGTATGCCTC | 60.561 | 50.000 | 17.85 | 16.36 | 44.97 | 4.70 |
2761 | 2871 | 1.305201 | TCTTGAGAACACCAAACGCC | 58.695 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
13 | 14 | 4.666655 | CGCCATAATAGCAGCGTCATTAAC | 60.667 | 45.833 | 0.00 | 0.00 | 43.45 | 2.01 |
14 | 15 | 3.431912 | CGCCATAATAGCAGCGTCATTAA | 59.568 | 43.478 | 0.00 | 0.00 | 43.45 | 1.40 |
15 | 16 | 2.993220 | CGCCATAATAGCAGCGTCATTA | 59.007 | 45.455 | 0.00 | 0.00 | 43.45 | 1.90 |
16 | 17 | 1.800586 | CGCCATAATAGCAGCGTCATT | 59.199 | 47.619 | 0.00 | 0.00 | 43.45 | 2.57 |
17 | 18 | 1.432514 | CGCCATAATAGCAGCGTCAT | 58.567 | 50.000 | 0.00 | 0.00 | 43.45 | 3.06 |
18 | 19 | 2.899153 | CGCCATAATAGCAGCGTCA | 58.101 | 52.632 | 0.00 | 0.00 | 43.45 | 4.35 |
22 | 23 | 2.221981 | GTGAGAACGCCATAATAGCAGC | 59.778 | 50.000 | 0.00 | 0.00 | 0.00 | 5.25 |
23 | 24 | 3.457234 | TGTGAGAACGCCATAATAGCAG | 58.543 | 45.455 | 0.00 | 0.00 | 0.00 | 4.24 |
24 | 25 | 3.535280 | TGTGAGAACGCCATAATAGCA | 57.465 | 42.857 | 0.00 | 0.00 | 0.00 | 3.49 |
25 | 26 | 5.696724 | ACTTATGTGAGAACGCCATAATAGC | 59.303 | 40.000 | 0.00 | 0.00 | 0.00 | 2.97 |
26 | 27 | 6.701841 | ACACTTATGTGAGAACGCCATAATAG | 59.298 | 38.462 | 15.13 | 0.00 | 46.55 | 1.73 |
27 | 28 | 6.578944 | ACACTTATGTGAGAACGCCATAATA | 58.421 | 36.000 | 15.13 | 0.00 | 46.55 | 0.98 |
28 | 29 | 5.428253 | ACACTTATGTGAGAACGCCATAAT | 58.572 | 37.500 | 15.13 | 0.00 | 46.55 | 1.28 |
29 | 30 | 4.827692 | ACACTTATGTGAGAACGCCATAA | 58.172 | 39.130 | 15.13 | 0.00 | 46.55 | 1.90 |
30 | 31 | 4.430007 | GACACTTATGTGAGAACGCCATA | 58.570 | 43.478 | 15.13 | 0.00 | 46.55 | 2.74 |
31 | 32 | 3.262420 | GACACTTATGTGAGAACGCCAT | 58.738 | 45.455 | 15.13 | 0.00 | 46.55 | 4.40 |
32 | 33 | 2.611971 | GGACACTTATGTGAGAACGCCA | 60.612 | 50.000 | 15.13 | 0.00 | 46.55 | 5.69 |
33 | 34 | 2.000447 | GGACACTTATGTGAGAACGCC | 59.000 | 52.381 | 15.13 | 3.65 | 46.55 | 5.68 |
34 | 35 | 2.960819 | AGGACACTTATGTGAGAACGC | 58.039 | 47.619 | 15.13 | 0.00 | 46.55 | 4.84 |
35 | 36 | 5.924475 | AAAAGGACACTTATGTGAGAACG | 57.076 | 39.130 | 15.13 | 0.00 | 46.55 | 3.95 |
36 | 37 | 8.379457 | ACTAAAAAGGACACTTATGTGAGAAC | 57.621 | 34.615 | 15.13 | 3.05 | 46.55 | 3.01 |
37 | 38 | 8.974060 | AACTAAAAAGGACACTTATGTGAGAA | 57.026 | 30.769 | 15.13 | 0.00 | 46.55 | 2.87 |
38 | 39 | 7.384115 | CGAACTAAAAAGGACACTTATGTGAGA | 59.616 | 37.037 | 15.13 | 0.00 | 46.55 | 3.27 |
39 | 40 | 7.384115 | TCGAACTAAAAAGGACACTTATGTGAG | 59.616 | 37.037 | 15.13 | 2.70 | 46.55 | 3.51 |
40 | 41 | 7.211573 | TCGAACTAAAAAGGACACTTATGTGA | 58.788 | 34.615 | 15.13 | 0.00 | 46.55 | 3.58 |
42 | 43 | 6.147328 | GCTCGAACTAAAAAGGACACTTATGT | 59.853 | 38.462 | 0.00 | 0.00 | 43.71 | 2.29 |
43 | 44 | 6.369065 | AGCTCGAACTAAAAAGGACACTTATG | 59.631 | 38.462 | 0.00 | 0.00 | 35.41 | 1.90 |
44 | 45 | 6.465084 | AGCTCGAACTAAAAAGGACACTTAT | 58.535 | 36.000 | 0.00 | 0.00 | 35.41 | 1.73 |
45 | 46 | 5.850614 | AGCTCGAACTAAAAAGGACACTTA | 58.149 | 37.500 | 0.00 | 0.00 | 35.41 | 2.24 |
46 | 47 | 4.704965 | AGCTCGAACTAAAAAGGACACTT | 58.295 | 39.130 | 0.00 | 0.00 | 38.99 | 3.16 |
47 | 48 | 4.202223 | TGAGCTCGAACTAAAAAGGACACT | 60.202 | 41.667 | 9.64 | 0.00 | 0.00 | 3.55 |
48 | 49 | 4.056050 | TGAGCTCGAACTAAAAAGGACAC | 58.944 | 43.478 | 9.64 | 0.00 | 0.00 | 3.67 |
49 | 50 | 4.330944 | TGAGCTCGAACTAAAAAGGACA | 57.669 | 40.909 | 9.64 | 0.00 | 0.00 | 4.02 |
50 | 51 | 6.757010 | TCATATGAGCTCGAACTAAAAAGGAC | 59.243 | 38.462 | 9.64 | 0.00 | 0.00 | 3.85 |
51 | 52 | 6.873997 | TCATATGAGCTCGAACTAAAAAGGA | 58.126 | 36.000 | 9.64 | 0.00 | 0.00 | 3.36 |
52 | 53 | 7.171447 | CTCATATGAGCTCGAACTAAAAAGG | 57.829 | 40.000 | 19.47 | 0.00 | 35.13 | 3.11 |
67 | 68 | 6.922247 | ATTGTTCACTCAAGCTCATATGAG | 57.078 | 37.500 | 25.64 | 25.64 | 46.69 | 2.90 |
68 | 69 | 8.791327 | TTTATTGTTCACTCAAGCTCATATGA | 57.209 | 30.769 | 5.07 | 5.07 | 0.00 | 2.15 |
71 | 72 | 8.677300 | GGATTTTATTGTTCACTCAAGCTCATA | 58.323 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
72 | 73 | 7.363268 | GGGATTTTATTGTTCACTCAAGCTCAT | 60.363 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
73 | 74 | 6.071952 | GGGATTTTATTGTTCACTCAAGCTCA | 60.072 | 38.462 | 0.00 | 0.00 | 0.00 | 4.26 |
74 | 75 | 6.325596 | GGGATTTTATTGTTCACTCAAGCTC | 58.674 | 40.000 | 0.00 | 0.00 | 0.00 | 4.09 |
75 | 76 | 5.185828 | GGGGATTTTATTGTTCACTCAAGCT | 59.814 | 40.000 | 0.00 | 0.00 | 0.00 | 3.74 |
76 | 77 | 5.410924 | GGGGATTTTATTGTTCACTCAAGC | 58.589 | 41.667 | 0.00 | 0.00 | 0.00 | 4.01 |
77 | 78 | 5.480073 | TGGGGGATTTTATTGTTCACTCAAG | 59.520 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
78 | 79 | 5.398236 | TGGGGGATTTTATTGTTCACTCAA | 58.602 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
79 | 80 | 5.004361 | TGGGGGATTTTATTGTTCACTCA | 57.996 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
80 | 81 | 5.993748 | TTGGGGGATTTTATTGTTCACTC | 57.006 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
81 | 82 | 6.755542 | TTTTGGGGGATTTTATTGTTCACT | 57.244 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
139 | 140 | 6.692486 | ACATTTACCAAACTTTGTCACAACA | 58.308 | 32.000 | 0.00 | 0.00 | 0.00 | 3.33 |
140 | 141 | 7.589574 | AACATTTACCAAACTTTGTCACAAC | 57.410 | 32.000 | 0.00 | 0.00 | 0.00 | 3.32 |
142 | 143 | 7.872993 | TGAAAACATTTACCAAACTTTGTCACA | 59.127 | 29.630 | 0.88 | 0.00 | 0.00 | 3.58 |
143 | 144 | 8.245701 | TGAAAACATTTACCAAACTTTGTCAC | 57.754 | 30.769 | 0.88 | 0.00 | 0.00 | 3.67 |
145 | 146 | 8.379902 | CACTGAAAACATTTACCAAACTTTGTC | 58.620 | 33.333 | 0.88 | 0.00 | 0.00 | 3.18 |
157 | 158 | 4.662468 | TGCAAGGCACTGAAAACATTTA | 57.338 | 36.364 | 0.00 | 0.00 | 40.86 | 1.40 |
167 | 168 | 2.512485 | TGAAACATTGCAAGGCACTG | 57.488 | 45.000 | 11.69 | 2.98 | 43.30 | 3.66 |
169 | 170 | 2.028748 | AGGATGAAACATTGCAAGGCAC | 60.029 | 45.455 | 11.69 | 3.53 | 38.71 | 5.01 |
190 | 191 | 6.330278 | CACGACTTCTAGGTATGTCATTTCA | 58.670 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
194 | 195 | 3.068307 | GCCACGACTTCTAGGTATGTCAT | 59.932 | 47.826 | 0.00 | 0.00 | 0.00 | 3.06 |
195 | 196 | 2.426024 | GCCACGACTTCTAGGTATGTCA | 59.574 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
197 | 198 | 2.165845 | GTGCCACGACTTCTAGGTATGT | 59.834 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
198 | 199 | 2.165641 | TGTGCCACGACTTCTAGGTATG | 59.834 | 50.000 | 0.00 | 0.00 | 0.00 | 2.39 |
199 | 200 | 2.453521 | TGTGCCACGACTTCTAGGTAT | 58.546 | 47.619 | 0.00 | 0.00 | 0.00 | 2.73 |
201 | 202 | 1.045407 | TTGTGCCACGACTTCTAGGT | 58.955 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
202 | 203 | 2.163818 | TTTGTGCCACGACTTCTAGG | 57.836 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
203 | 204 | 3.560068 | AGTTTTTGTGCCACGACTTCTAG | 59.440 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
204 | 205 | 3.311322 | CAGTTTTTGTGCCACGACTTCTA | 59.689 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
206 | 207 | 2.450160 | CAGTTTTTGTGCCACGACTTC | 58.550 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
211 | 212 | 2.956469 | CACCAGTTTTTGTGCCACG | 58.044 | 52.632 | 0.00 | 0.00 | 0.00 | 4.94 |
251 | 252 | 8.473796 | GTCGTGGTAAAAATACAAAATCAACAC | 58.526 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
252 | 253 | 8.407064 | AGTCGTGGTAAAAATACAAAATCAACA | 58.593 | 29.630 | 0.00 | 0.00 | 0.00 | 3.33 |
254 | 255 | 9.453325 | GAAGTCGTGGTAAAAATACAAAATCAA | 57.547 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
264 | 265 | 5.838531 | TTTGTGGAAGTCGTGGTAAAAAT | 57.161 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
265 | 266 | 5.125739 | ACATTTGTGGAAGTCGTGGTAAAAA | 59.874 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
270 | 271 | 2.218603 | GACATTTGTGGAAGTCGTGGT | 58.781 | 47.619 | 0.00 | 0.00 | 0.00 | 4.16 |
275 | 276 | 7.615582 | TCATAGAATGACATTTGTGGAAGTC | 57.384 | 36.000 | 1.39 | 0.00 | 33.59 | 3.01 |
299 | 300 | 6.199908 | TGTTTCGAATGATTGCAAAATTTCGT | 59.800 | 30.769 | 26.21 | 11.90 | 37.06 | 3.85 |
300 | 301 | 6.579583 | TGTTTCGAATGATTGCAAAATTTCG | 58.420 | 32.000 | 23.74 | 23.74 | 37.07 | 3.46 |
305 | 306 | 8.754230 | TCATAATGTTTCGAATGATTGCAAAA | 57.246 | 26.923 | 1.71 | 0.00 | 0.00 | 2.44 |
395 | 402 | 2.880963 | AGATTAACTGAGCTCGAGCC | 57.119 | 50.000 | 32.94 | 23.66 | 43.38 | 4.70 |
408 | 415 | 3.681594 | GCACGAATCAGGACCCAGATTAA | 60.682 | 47.826 | 9.17 | 0.00 | 33.35 | 1.40 |
414 | 421 | 0.327924 | AATGCACGAATCAGGACCCA | 59.672 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
416 | 423 | 3.689649 | AGTAAAATGCACGAATCAGGACC | 59.310 | 43.478 | 0.00 | 0.00 | 0.00 | 4.46 |
534 | 542 | 5.835280 | AGATCACACAGAGAAACCCAATTTT | 59.165 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
535 | 543 | 5.242393 | CAGATCACACAGAGAAACCCAATTT | 59.758 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
570 | 580 | 0.808125 | ATAAATCGCGCCACAGCAAA | 59.192 | 45.000 | 0.00 | 0.00 | 39.83 | 3.68 |
634 | 650 | 4.534794 | AAGCGTTTGAAAAATTGGCAAG | 57.465 | 36.364 | 5.96 | 0.00 | 0.00 | 4.01 |
812 | 830 | 2.513259 | GGGTCCGTCTGGTCAACCA | 61.513 | 63.158 | 1.20 | 1.20 | 45.30 | 3.67 |
821 | 839 | 3.069318 | GAGCGAAGGGGTCCGTCT | 61.069 | 66.667 | 0.00 | 0.00 | 37.18 | 4.18 |
853 | 871 | 1.599171 | CGCAAATGTTTGACTGCCGAA | 60.599 | 47.619 | 9.53 | 0.00 | 40.55 | 4.30 |
856 | 874 | 1.851658 | AACGCAAATGTTTGACTGCC | 58.148 | 45.000 | 9.53 | 0.00 | 40.55 | 4.85 |
877 | 902 | 2.022080 | GCGAACAAACAAACGACGTAC | 58.978 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
878 | 903 | 1.657594 | TGCGAACAAACAAACGACGTA | 59.342 | 42.857 | 0.00 | 0.00 | 0.00 | 3.57 |
879 | 904 | 0.443088 | TGCGAACAAACAAACGACGT | 59.557 | 45.000 | 0.00 | 0.00 | 0.00 | 4.34 |
880 | 905 | 0.828959 | GTGCGAACAAACAAACGACG | 59.171 | 50.000 | 0.00 | 0.00 | 0.00 | 5.12 |
881 | 906 | 1.185189 | GGTGCGAACAAACAAACGAC | 58.815 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
883 | 908 | 2.741122 | TAGGTGCGAACAAACAAACG | 57.259 | 45.000 | 0.00 | 0.00 | 0.00 | 3.60 |
885 | 910 | 5.353123 | GGATAGATAGGTGCGAACAAACAAA | 59.647 | 40.000 | 0.00 | 0.00 | 0.00 | 2.83 |
886 | 911 | 4.873827 | GGATAGATAGGTGCGAACAAACAA | 59.126 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
887 | 912 | 4.081365 | TGGATAGATAGGTGCGAACAAACA | 60.081 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
895 | 920 | 1.200252 | CCGTCTGGATAGATAGGTGCG | 59.800 | 57.143 | 0.00 | 0.00 | 37.49 | 5.34 |
928 | 958 | 3.626542 | GTTACCGACGAAAACGCAG | 57.373 | 52.632 | 0.00 | 0.00 | 0.00 | 5.18 |
1083 | 1147 | 4.264460 | AGGAAGACAGACAGATGTGTTC | 57.736 | 45.455 | 0.00 | 7.90 | 47.00 | 3.18 |
1127 | 1191 | 3.036959 | TCCCTCCCTCCCTCCCTC | 61.037 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
1130 | 1194 | 4.179599 | CCCTCCCTCCCTCCCTCC | 62.180 | 77.778 | 0.00 | 0.00 | 0.00 | 4.30 |
1138 | 1208 | 4.179599 | CCCTCCCTCCCTCCCTCC | 62.180 | 77.778 | 0.00 | 0.00 | 0.00 | 4.30 |
1144 | 1214 | 0.998945 | CTCTCTCTCCCTCCCTCCCT | 60.999 | 65.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1145 | 1215 | 0.996762 | TCTCTCTCTCCCTCCCTCCC | 60.997 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1146 | 1216 | 0.478507 | CTCTCTCTCTCCCTCCCTCC | 59.521 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1147 | 1217 | 0.478507 | CCTCTCTCTCTCCCTCCCTC | 59.521 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1148 | 1218 | 0.047176 | TCCTCTCTCTCTCCCTCCCT | 59.953 | 60.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1149 | 1219 | 1.158007 | ATCCTCTCTCTCTCCCTCCC | 58.842 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1150 | 1220 | 2.490902 | GGAATCCTCTCTCTCTCCCTCC | 60.491 | 59.091 | 0.00 | 0.00 | 0.00 | 4.30 |
1151 | 1221 | 2.490902 | GGGAATCCTCTCTCTCTCCCTC | 60.491 | 59.091 | 0.00 | 0.00 | 39.61 | 4.30 |
1152 | 1222 | 1.503347 | GGGAATCCTCTCTCTCTCCCT | 59.497 | 57.143 | 0.00 | 0.00 | 39.61 | 4.20 |
1153 | 1223 | 1.503347 | AGGGAATCCTCTCTCTCTCCC | 59.497 | 57.143 | 0.00 | 0.00 | 39.80 | 4.30 |
1154 | 1224 | 2.597455 | CAGGGAATCCTCTCTCTCTCC | 58.403 | 57.143 | 0.00 | 0.00 | 42.67 | 3.71 |
1155 | 1225 | 2.091333 | ACCAGGGAATCCTCTCTCTCTC | 60.091 | 54.545 | 0.00 | 0.00 | 42.67 | 3.20 |
1156 | 1226 | 1.936631 | ACCAGGGAATCCTCTCTCTCT | 59.063 | 52.381 | 0.00 | 0.00 | 42.67 | 3.10 |
1157 | 1227 | 2.470057 | ACCAGGGAATCCTCTCTCTC | 57.530 | 55.000 | 0.00 | 0.00 | 42.67 | 3.20 |
1158 | 1228 | 2.843113 | CAAACCAGGGAATCCTCTCTCT | 59.157 | 50.000 | 0.00 | 0.00 | 42.67 | 3.10 |
1159 | 1229 | 2.092699 | CCAAACCAGGGAATCCTCTCTC | 60.093 | 54.545 | 0.00 | 0.00 | 42.67 | 3.20 |
1160 | 1230 | 1.918957 | CCAAACCAGGGAATCCTCTCT | 59.081 | 52.381 | 0.00 | 0.00 | 42.67 | 3.10 |
1161 | 1231 | 1.636003 | ACCAAACCAGGGAATCCTCTC | 59.364 | 52.381 | 0.00 | 0.00 | 42.67 | 3.20 |
1162 | 1232 | 1.355720 | CACCAAACCAGGGAATCCTCT | 59.644 | 52.381 | 0.00 | 0.00 | 42.67 | 3.69 |
1163 | 1233 | 1.616994 | CCACCAAACCAGGGAATCCTC | 60.617 | 57.143 | 0.00 | 0.00 | 42.67 | 3.71 |
1164 | 1234 | 0.409484 | CCACCAAACCAGGGAATCCT | 59.591 | 55.000 | 0.00 | 0.00 | 46.26 | 3.24 |
1165 | 1235 | 1.257750 | GCCACCAAACCAGGGAATCC | 61.258 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1166 | 1236 | 1.595093 | CGCCACCAAACCAGGGAATC | 61.595 | 60.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1167 | 1237 | 1.606313 | CGCCACCAAACCAGGGAAT | 60.606 | 57.895 | 0.00 | 0.00 | 0.00 | 3.01 |
1168 | 1238 | 2.203422 | CGCCACCAAACCAGGGAA | 60.203 | 61.111 | 0.00 | 0.00 | 0.00 | 3.97 |
1169 | 1239 | 4.966787 | GCGCCACCAAACCAGGGA | 62.967 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
1170 | 1240 | 4.974721 | AGCGCCACCAAACCAGGG | 62.975 | 66.667 | 2.29 | 0.00 | 0.00 | 4.45 |
1211 | 1281 | 3.969802 | GTTGCCGTTGCTGCTGCT | 61.970 | 61.111 | 17.00 | 0.00 | 40.48 | 4.24 |
1323 | 1393 | 3.764218 | AGAACAAGAAGAGAGACGGGTA | 58.236 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
1474 | 1544 | 0.326618 | AATCGGTGGGGATGGAGAGT | 60.327 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1501 | 1571 | 4.712122 | AGAGCGTTTTCTCTTCTCCTAG | 57.288 | 45.455 | 0.00 | 0.00 | 40.32 | 3.02 |
1503 | 1573 | 3.119779 | CGTAGAGCGTTTTCTCTTCTCCT | 60.120 | 47.826 | 0.00 | 0.00 | 42.88 | 3.69 |
1504 | 1574 | 3.172824 | CGTAGAGCGTTTTCTCTTCTCC | 58.827 | 50.000 | 0.00 | 0.00 | 42.88 | 3.71 |
1505 | 1575 | 2.595095 | GCGTAGAGCGTTTTCTCTTCTC | 59.405 | 50.000 | 0.00 | 0.00 | 42.88 | 2.87 |
1519 | 1589 | 6.091169 | GCAAGTATACTAGGAGTAGCGTAGAG | 59.909 | 46.154 | 5.65 | 0.00 | 38.14 | 2.43 |
1520 | 1590 | 5.931146 | GCAAGTATACTAGGAGTAGCGTAGA | 59.069 | 44.000 | 5.65 | 0.00 | 38.14 | 2.59 |
1521 | 1591 | 5.122082 | GGCAAGTATACTAGGAGTAGCGTAG | 59.878 | 48.000 | 5.65 | 0.00 | 40.07 | 3.51 |
1522 | 1592 | 4.999950 | GGCAAGTATACTAGGAGTAGCGTA | 59.000 | 45.833 | 5.65 | 0.00 | 33.66 | 4.42 |
1523 | 1593 | 3.819902 | GGCAAGTATACTAGGAGTAGCGT | 59.180 | 47.826 | 5.65 | 0.00 | 33.66 | 5.07 |
1524 | 1594 | 3.190953 | GGGCAAGTATACTAGGAGTAGCG | 59.809 | 52.174 | 5.65 | 0.00 | 33.66 | 4.26 |
1525 | 1595 | 4.409187 | AGGGCAAGTATACTAGGAGTAGC | 58.591 | 47.826 | 5.65 | 2.51 | 33.66 | 3.58 |
1526 | 1596 | 6.980416 | AAAGGGCAAGTATACTAGGAGTAG | 57.020 | 41.667 | 5.65 | 0.00 | 33.66 | 2.57 |
1527 | 1597 | 8.284435 | TCTAAAAGGGCAAGTATACTAGGAGTA | 58.716 | 37.037 | 5.65 | 0.00 | 34.82 | 2.59 |
1528 | 1598 | 7.130775 | TCTAAAAGGGCAAGTATACTAGGAGT | 58.869 | 38.462 | 5.65 | 0.00 | 0.00 | 3.85 |
1529 | 1599 | 7.598759 | TCTAAAAGGGCAAGTATACTAGGAG | 57.401 | 40.000 | 5.65 | 0.00 | 0.00 | 3.69 |
1530 | 1600 | 9.310449 | CTATCTAAAAGGGCAAGTATACTAGGA | 57.690 | 37.037 | 5.65 | 0.00 | 0.00 | 2.94 |
1531 | 1601 | 9.091220 | ACTATCTAAAAGGGCAAGTATACTAGG | 57.909 | 37.037 | 5.65 | 2.99 | 0.00 | 3.02 |
1534 | 1604 | 7.715686 | GCAACTATCTAAAAGGGCAAGTATACT | 59.284 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
1535 | 1605 | 7.715686 | AGCAACTATCTAAAAGGGCAAGTATAC | 59.284 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
1536 | 1606 | 7.715249 | CAGCAACTATCTAAAAGGGCAAGTATA | 59.285 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
1537 | 1607 | 6.543831 | CAGCAACTATCTAAAAGGGCAAGTAT | 59.456 | 38.462 | 0.00 | 0.00 | 0.00 | 2.12 |
1600 | 1670 | 5.631929 | TGCATATATACGACGGATGAAACAC | 59.368 | 40.000 | 1.83 | 0.00 | 0.00 | 3.32 |
1613 | 1683 | 4.500545 | GCCTCCTCATCCTGCATATATACG | 60.501 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1654 | 1724 | 4.065281 | GGTCCTCCACGGTGGTCG | 62.065 | 72.222 | 25.53 | 17.32 | 45.88 | 4.79 |
1700 | 1770 | 2.167281 | CTCGATGTCAACCTCCATCACT | 59.833 | 50.000 | 0.00 | 0.00 | 37.84 | 3.41 |
1712 | 1782 | 1.996798 | GGGGATAGTCCTCGATGTCA | 58.003 | 55.000 | 0.00 | 0.00 | 36.57 | 3.58 |
1954 | 2035 | 3.203442 | CGAAGCTACGGGCCTACA | 58.797 | 61.111 | 0.84 | 0.00 | 43.05 | 2.74 |
1983 | 2064 | 4.721132 | ACAAAATCAACGTAGGAAAGGGA | 58.279 | 39.130 | 0.00 | 0.00 | 0.00 | 4.20 |
1985 | 2066 | 5.941948 | AGACAAAATCAACGTAGGAAAGG | 57.058 | 39.130 | 0.00 | 0.00 | 0.00 | 3.11 |
1986 | 2067 | 6.371389 | GGAAGACAAAATCAACGTAGGAAAG | 58.629 | 40.000 | 0.00 | 0.00 | 0.00 | 2.62 |
1987 | 2068 | 5.049954 | CGGAAGACAAAATCAACGTAGGAAA | 60.050 | 40.000 | 0.00 | 0.00 | 0.00 | 3.13 |
1988 | 2069 | 4.449743 | CGGAAGACAAAATCAACGTAGGAA | 59.550 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
1990 | 2071 | 3.424433 | GCGGAAGACAAAATCAACGTAGG | 60.424 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
1991 | 2072 | 3.432252 | AGCGGAAGACAAAATCAACGTAG | 59.568 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
1992 | 2073 | 3.395639 | AGCGGAAGACAAAATCAACGTA | 58.604 | 40.909 | 0.00 | 0.00 | 0.00 | 3.57 |
1993 | 2074 | 2.218603 | AGCGGAAGACAAAATCAACGT | 58.781 | 42.857 | 0.00 | 0.00 | 0.00 | 3.99 |
1994 | 2075 | 2.969443 | AGCGGAAGACAAAATCAACG | 57.031 | 45.000 | 0.00 | 0.00 | 0.00 | 4.10 |
1995 | 2076 | 4.712763 | CAGTAGCGGAAGACAAAATCAAC | 58.287 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
1996 | 2077 | 3.188460 | GCAGTAGCGGAAGACAAAATCAA | 59.812 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
1997 | 2078 | 2.742053 | GCAGTAGCGGAAGACAAAATCA | 59.258 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
1998 | 2079 | 3.391227 | GCAGTAGCGGAAGACAAAATC | 57.609 | 47.619 | 0.00 | 0.00 | 0.00 | 2.17 |
2097 | 2193 | 2.095059 | AGGACGAACACACGTACCATAC | 60.095 | 50.000 | 0.00 | 0.00 | 46.76 | 2.39 |
2098 | 2194 | 2.161855 | AGGACGAACACACGTACCATA | 58.838 | 47.619 | 0.00 | 0.00 | 46.76 | 2.74 |
2099 | 2195 | 0.963962 | AGGACGAACACACGTACCAT | 59.036 | 50.000 | 0.00 | 0.00 | 46.76 | 3.55 |
2144 | 2240 | 0.107654 | AGAATCCCGCCCGAAAAGAG | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
2152 | 2248 | 2.115291 | GTTCTGCAGAATCCCGCCC | 61.115 | 63.158 | 30.65 | 13.24 | 36.33 | 6.13 |
2187 | 2290 | 6.121590 | TGCAGATTATGTGGAAAGCAGATTA | 58.878 | 36.000 | 0.00 | 0.00 | 0.00 | 1.75 |
2211 | 2314 | 5.011125 | TGGAATCTCAGAAAAGAAGTCGACT | 59.989 | 40.000 | 13.58 | 13.58 | 0.00 | 4.18 |
2217 | 2320 | 9.277783 | TCTTAAACTGGAATCTCAGAAAAGAAG | 57.722 | 33.333 | 5.89 | 3.30 | 38.11 | 2.85 |
2234 | 2337 | 9.778993 | CATAACTGAATCCACAATCTTAAACTG | 57.221 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
2258 | 2361 | 0.317799 | TTGCAGGCATTTCAACGCAT | 59.682 | 45.000 | 0.00 | 0.00 | 0.00 | 4.73 |
2271 | 2374 | 2.832129 | TCTGTCTAAGGGTACTTGCAGG | 59.168 | 50.000 | 0.00 | 0.00 | 37.53 | 4.85 |
2272 | 2375 | 4.537135 | TTCTGTCTAAGGGTACTTGCAG | 57.463 | 45.455 | 0.00 | 0.00 | 37.53 | 4.41 |
2275 | 2378 | 7.360101 | CGAACAATTTCTGTCTAAGGGTACTTG | 60.360 | 40.741 | 0.00 | 0.00 | 37.23 | 3.16 |
2281 | 2385 | 5.065218 | CCATCGAACAATTTCTGTCTAAGGG | 59.935 | 44.000 | 0.00 | 0.00 | 37.23 | 3.95 |
2328 | 2432 | 8.855279 | GCACTCATATTCGACAAGATACTATTC | 58.145 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
2331 | 2435 | 6.204108 | TCGCACTCATATTCGACAAGATACTA | 59.796 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
2404 | 2512 | 9.323963 | CTTTTGCAACGAACAAAACTTTAAAAT | 57.676 | 25.926 | 0.00 | 0.00 | 40.94 | 1.82 |
2424 | 2532 | 1.607148 | ACTTAGTTCGCCCACTTTTGC | 59.393 | 47.619 | 0.00 | 0.00 | 0.00 | 3.68 |
2429 | 2537 | 2.922740 | TTGAACTTAGTTCGCCCACT | 57.077 | 45.000 | 18.64 | 0.00 | 44.55 | 4.00 |
2450 | 2558 | 6.819146 | TGTTTAGTTCGCCCATTTTTCTTTTT | 59.181 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
2451 | 2559 | 6.342111 | TGTTTAGTTCGCCCATTTTTCTTTT | 58.658 | 32.000 | 0.00 | 0.00 | 0.00 | 2.27 |
2452 | 2560 | 5.908341 | TGTTTAGTTCGCCCATTTTTCTTT | 58.092 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2453 | 2561 | 5.523438 | TGTTTAGTTCGCCCATTTTTCTT | 57.477 | 34.783 | 0.00 | 0.00 | 0.00 | 2.52 |
2454 | 2562 | 5.722021 | ATGTTTAGTTCGCCCATTTTTCT | 57.278 | 34.783 | 0.00 | 0.00 | 0.00 | 2.52 |
2455 | 2563 | 6.848451 | TCTATGTTTAGTTCGCCCATTTTTC | 58.152 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2460 | 2568 | 3.869246 | CGTTCTATGTTTAGTTCGCCCAT | 59.131 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
2474 | 2582 | 9.914131 | TCATACCTTGAGATTATTCGTTCTATG | 57.086 | 33.333 | 0.00 | 0.00 | 0.00 | 2.23 |
2550 | 2660 | 1.064003 | TGCCAACACTCTACCACCAT | 58.936 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
2694 | 2804 | 3.297736 | CCTGGGTATAAACTCGAGACCT | 58.702 | 50.000 | 21.68 | 5.16 | 0.00 | 3.85 |
2723 | 2833 | 2.874701 | AGATGAAATGGCGAATTCTCGG | 59.125 | 45.455 | 3.52 | 0.00 | 45.55 | 4.63 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.