Multiple sequence alignment - TraesCS3B01G210200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G210200 chr3B 100.000 9219 0 0 1 9219 246151823 246161041 0.000000e+00 17025
1 TraesCS3B01G210200 chr3B 90.196 102 8 2 5629 5729 372246294 372246394 2.090000e-26 132
2 TraesCS3B01G210200 chr3A 97.105 2211 38 7 4746 6954 208242699 208244885 0.000000e+00 3705
3 TraesCS3B01G210200 chr3A 96.365 2146 70 2 7077 9219 208244883 208247023 0.000000e+00 3524
4 TraesCS3B01G210200 chr3A 91.840 2353 148 24 2433 4745 83232551 83234899 0.000000e+00 3241
5 TraesCS3B01G210200 chr3A 93.529 1669 67 17 1 1633 208240302 208241965 0.000000e+00 2446
6 TraesCS3B01G210200 chr3A 90.308 1527 92 27 2433 3927 157041127 157042629 0.000000e+00 1949
7 TraesCS3B01G210200 chr3A 86.671 1523 149 34 3180 4656 725345203 725343689 0.000000e+00 1639
8 TraesCS3B01G210200 chr3A 90.656 1220 89 9 2719 3917 732774837 732773622 0.000000e+00 1598
9 TraesCS3B01G210200 chr3A 88.969 970 88 13 3700 4656 121473868 121472905 0.000000e+00 1181
10 TraesCS3B01G210200 chr3A 92.886 745 32 6 1712 2435 208241963 208242707 0.000000e+00 1062
11 TraesCS3B01G210200 chr3A 88.258 775 71 13 3940 4704 732773346 732772582 0.000000e+00 909
12 TraesCS3B01G210200 chr3A 88.981 726 62 13 3987 4699 157042967 157043687 0.000000e+00 881
13 TraesCS3B01G210200 chr3D 96.365 2146 63 5 7077 9219 170679328 170681461 0.000000e+00 3517
14 TraesCS3B01G210200 chr3D 95.829 1990 48 10 4746 6719 170676865 170678835 0.000000e+00 3182
15 TraesCS3B01G210200 chr3D 92.896 1647 46 24 856 2435 170675231 170676873 0.000000e+00 2327
16 TraesCS3B01G210200 chr3D 96.958 789 21 1 1 786 170674129 170674917 0.000000e+00 1321
17 TraesCS3B01G210200 chr3D 97.071 239 6 1 6717 6954 170679092 170679330 1.440000e-107 401
18 TraesCS3B01G210200 chr3D 95.506 89 4 0 5628 5716 66523375 66523463 9.650000e-30 143
19 TraesCS3B01G210200 chr6A 91.338 2332 147 23 2433 4745 221350536 221348241 0.000000e+00 3136
20 TraesCS3B01G210200 chr6A 91.173 2345 156 26 2418 4749 362226506 362228812 0.000000e+00 3136
21 TraesCS3B01G210200 chr6A 90.307 2342 162 31 2432 4747 324279081 324281383 0.000000e+00 3007
22 TraesCS3B01G210200 chr6A 91.138 1512 102 11 3254 4747 223558514 223560011 0.000000e+00 2021
23 TraesCS3B01G210200 chr6A 87.608 1509 135 32 3180 4656 17930587 17932075 0.000000e+00 1703
24 TraesCS3B01G210200 chr6A 87.898 1413 108 27 2572 3948 19839024 19840409 0.000000e+00 1604
25 TraesCS3B01G210200 chr6A 89.372 1195 99 14 3180 4349 117065379 117064188 0.000000e+00 1478
26 TraesCS3B01G210200 chr6A 90.672 922 62 12 2427 3347 324267025 324267923 0.000000e+00 1205
27 TraesCS3B01G210200 chr6A 91.000 800 46 14 2432 3229 223557744 223558519 0.000000e+00 1055
28 TraesCS3B01G210200 chr6A 91.148 418 20 8 1180 1594 61706049 61705646 1.350000e-152 551
29 TraesCS3B01G210200 chr6A 93.750 128 8 0 6952 7079 186279884 186279757 9.450000e-45 193
30 TraesCS3B01G210200 chr6A 95.294 85 4 0 5632 5716 601226106 601226022 1.610000e-27 135
31 TraesCS3B01G210200 chr6A 90.625 96 8 1 5625 5719 19837519 19837614 9.720000e-25 126
32 TraesCS3B01G210200 chr4A 93.663 1515 79 4 2461 3960 743145551 743144039 0.000000e+00 2250
33 TraesCS3B01G210200 chr4A 89.222 1503 131 11 3180 4656 18296061 18297558 0.000000e+00 1849
34 TraesCS3B01G210200 chr7A 89.642 1535 117 25 2432 3928 622340231 622338701 0.000000e+00 1916
35 TraesCS3B01G210200 chr7A 89.516 1383 113 12 3302 4656 206968624 206970002 0.000000e+00 1722
36 TraesCS3B01G210200 chr7A 87.874 1369 124 22 3327 4664 17713400 17712043 0.000000e+00 1570
37 TraesCS3B01G210200 chr7A 88.360 756 67 14 3959 4704 622338455 622337711 0.000000e+00 889
38 TraesCS3B01G210200 chr7A 74.615 390 66 29 4348 4720 699806025 699805652 3.470000e-29 141
39 TraesCS3B01G210200 chr7A 85.950 121 13 4 4603 4720 699822071 699821952 9.720000e-25 126
40 TraesCS3B01G210200 chr5A 87.972 1588 123 28 2433 3982 115023830 115022273 0.000000e+00 1812
41 TraesCS3B01G210200 chr5A 86.474 1560 145 42 3180 4704 174587364 174585836 0.000000e+00 1652
42 TraesCS3B01G210200 chr5A 88.889 585 48 11 4082 4656 11060040 11060617 0.000000e+00 704
43 TraesCS3B01G210200 chr5A 94.382 89 4 1 5628 5716 526875313 526875400 1.610000e-27 135
44 TraesCS3B01G210200 chr5B 88.602 1509 116 25 3180 4656 52640180 52641664 0.000000e+00 1783
45 TraesCS3B01G210200 chr2A 87.638 1537 122 35 2449 3948 20636428 20637933 0.000000e+00 1724
46 TraesCS3B01G210200 chr2A 93.525 139 8 1 6951 7088 74143892 74143754 1.210000e-48 206
47 TraesCS3B01G210200 chr2B 98.438 128 2 0 6952 7079 764910700 764910573 9.310000e-55 226
48 TraesCS3B01G210200 chr1A 92.857 140 10 0 6950 7089 3261720 3261581 4.360000e-48 204
49 TraesCS3B01G210200 chr1A 94.615 130 7 0 6951 7080 574666425 574666554 1.570000e-47 202
50 TraesCS3B01G210200 chr1A 92.701 137 9 1 6952 7087 481651101 481650965 7.300000e-46 196
51 TraesCS3B01G210200 chr1A 92.029 138 9 2 6947 7083 497228149 497228285 9.450000e-45 193
52 TraesCS3B01G210200 chr6B 93.382 136 8 1 6952 7087 207511027 207510893 5.650000e-47 200
53 TraesCS3B01G210200 chr6B 91.667 96 7 1 5625 5720 143457920 143457826 2.090000e-26 132
54 TraesCS3B01G210200 chr4B 93.333 135 9 0 6952 7086 55926031 55925897 5.650000e-47 200
55 TraesCS3B01G210200 chr4B 91.667 96 8 0 5632 5727 631527776 631527871 5.810000e-27 134
56 TraesCS3B01G210200 chr4B 92.391 92 7 0 5625 5716 423051087 423050996 2.090000e-26 132
57 TraesCS3B01G210200 chr7B 92.647 136 10 0 6951 7086 489146773 489146908 7.300000e-46 196
58 TraesCS3B01G210200 chr4D 94.488 127 7 0 6952 7078 31650909 31651035 7.300000e-46 196
59 TraesCS3B01G210200 chr4D 90.000 100 9 1 5627 5726 99160656 99160558 2.700000e-25 128
60 TraesCS3B01G210200 chr4D 94.048 84 5 0 5632 5715 99662407 99662490 2.700000e-25 128
61 TraesCS3B01G210200 chr1B 94.488 127 7 0 6952 7078 564897809 564897935 7.300000e-46 196
62 TraesCS3B01G210200 chr1B 92.593 135 10 0 6952 7086 626226879 626227013 2.630000e-45 195
63 TraesCS3B01G210200 chr1B 93.182 132 8 1 6952 7083 613039583 613039453 9.450000e-45 193
64 TraesCS3B01G210200 chr1B 96.591 88 3 0 5631 5718 580632956 580632869 7.460000e-31 147
65 TraesCS3B01G210200 chr1B 88.462 104 12 0 5623 5726 602170767 602170870 9.720000e-25 126
66 TraesCS3B01G210200 chrUn 93.798 129 8 0 6951 7079 322720537 322720409 2.630000e-45 195
67 TraesCS3B01G210200 chrUn 92.969 128 9 0 6952 7079 103517647 103517774 4.400000e-43 187
68 TraesCS3B01G210200 chrUn 91.176 136 12 0 6951 7086 92738630 92738765 1.580000e-42 185
69 TraesCS3B01G210200 chrUn 92.248 129 10 0 6951 7079 93156330 93156458 5.690000e-42 183
70 TraesCS3B01G210200 chrUn 92.188 128 10 0 6952 7079 16475962 16475835 2.040000e-41 182
71 TraesCS3B01G210200 chrUn 89.655 145 12 3 6949 7091 263456495 263456352 2.040000e-41 182
72 TraesCS3B01G210200 chrUn 90.071 141 12 2 6951 7089 339593840 339593980 2.040000e-41 182
73 TraesCS3B01G210200 chrUn 90.840 131 12 0 6951 7081 15951743 15951873 9.510000e-40 176
74 TraesCS3B01G210200 chrUn 91.406 128 11 0 6952 7079 108296318 108296191 9.510000e-40 176
75 TraesCS3B01G210200 chrUn 91.406 128 11 0 6952 7079 191163434 191163307 9.510000e-40 176
76 TraesCS3B01G210200 chrUn 92.941 85 6 0 5632 5716 77893463 77893547 3.500000e-24 124
77 TraesCS3B01G210200 chrUn 92.857 84 5 1 5631 5714 320256097 320256179 4.520000e-23 121
78 TraesCS3B01G210200 chrUn 92.857 84 5 1 5631 5714 357700747 357700829 4.520000e-23 121
79 TraesCS3B01G210200 chrUn 91.765 85 7 0 5632 5716 55723612 55723696 1.630000e-22 119
80 TraesCS3B01G210200 chrUn 90.110 91 9 0 5627 5717 301350031 301349941 1.630000e-22 119
81 TraesCS3B01G210200 chrUn 90.110 91 9 0 5627 5717 348118204 348118294 1.630000e-22 119
82 TraesCS3B01G210200 chrUn 90.698 86 8 0 5632 5717 67407028 67407113 2.100000e-21 115
83 TraesCS3B01G210200 chrUn 90.588 85 8 0 5632 5716 3346482 3346398 7.570000e-21 113
84 TraesCS3B01G210200 chrUn 87.629 97 12 0 5629 5725 23744114 23744018 7.570000e-21 113
85 TraesCS3B01G210200 chrUn 89.535 86 9 0 5631 5716 348315195 348315110 9.790000e-20 110
86 TraesCS3B01G210200 chr6D 93.798 129 8 0 6950 7078 95795904 95795776 2.630000e-45 195
87 TraesCS3B01G210200 chr6D 92.537 134 9 1 6947 7079 2680588 2680721 3.400000e-44 191
88 TraesCS3B01G210200 chr6D 92.537 134 9 1 6950 7083 303203848 303203980 3.400000e-44 191
89 TraesCS3B01G210200 chr6D 94.118 85 5 0 5632 5716 283795854 283795770 7.510000e-26 130
90 TraesCS3B01G210200 chr6D 92.308 91 6 1 5626 5716 105560459 105560548 2.700000e-25 128
91 TraesCS3B01G210200 chr6D 91.398 93 6 2 5625 5716 1551792 1551883 9.720000e-25 126
92 TraesCS3B01G210200 chr6D 93.023 86 6 0 5631 5716 9406691 9406776 9.720000e-25 126
93 TraesCS3B01G210200 chr6D 93.023 86 6 0 5625 5710 140086946 140086861 9.720000e-25 126
94 TraesCS3B01G210200 chr6D 93.023 86 6 0 5631 5716 206553954 206553869 9.720000e-25 126
95 TraesCS3B01G210200 chr6D 92.941 85 6 0 5632 5716 7985426 7985342 3.500000e-24 124
96 TraesCS3B01G210200 chr6D 92.941 85 6 0 5632 5716 99730205 99730289 3.500000e-24 124
97 TraesCS3B01G210200 chr6D 92.941 85 6 0 5632 5716 199210328 199210412 3.500000e-24 124
98 TraesCS3B01G210200 chr7D 91.971 137 11 0 6950 7086 150359429 150359293 9.450000e-45 193
99 TraesCS3B01G210200 chr7D 96.471 85 3 0 5632 5716 470204791 470204875 3.470000e-29 141
100 TraesCS3B01G210200 chr7D 94.118 85 5 0 5632 5716 218418305 218418389 7.510000e-26 130
101 TraesCS3B01G210200 chr7D 91.398 93 7 1 5627 5719 498226656 498226565 9.720000e-25 126
102 TraesCS3B01G210200 chr7D 90.426 94 9 0 5632 5725 195626098 195626191 3.500000e-24 124
103 TraesCS3B01G210200 chr5D 91.429 140 12 0 6952 7091 90314269 90314130 9.450000e-45 193
104 TraesCS3B01G210200 chr5D 91.667 132 10 1 6949 7079 527907698 527907829 2.040000e-41 182
105 TraesCS3B01G210200 chr5D 95.294 85 4 0 5632 5716 132477770 132477854 1.610000e-27 135
106 TraesCS3B01G210200 chr5D 92.222 90 6 1 5627 5716 225584074 225584162 9.720000e-25 126
107 TraesCS3B01G210200 chr5D 88.571 105 9 3 5631 5734 339760792 339760894 3.500000e-24 124
108 TraesCS3B01G210200 chr1D 93.750 128 8 0 6952 7079 178459512 178459639 9.450000e-45 193
109 TraesCS3B01G210200 chr1D 92.366 131 10 0 6952 7082 96486416 96486286 4.400000e-43 187
110 TraesCS3B01G210200 chr1D 93.023 86 6 0 5631 5716 209139362 209139277 9.720000e-25 126
111 TraesCS3B01G210200 chr1D 93.023 86 6 0 5632 5717 469153917 469154002 9.720000e-25 126
112 TraesCS3B01G210200 chr1D 92.135 89 6 1 5628 5716 46311244 46311331 3.500000e-24 124
113 TraesCS3B01G210200 chr2D 91.667 96 8 0 5623 5718 518804303 518804208 5.810000e-27 134
114 TraesCS3B01G210200 chr2D 93.258 89 6 0 5628 5716 534925461 534925549 2.090000e-26 132
115 TraesCS3B01G210200 chr2D 90.000 100 8 2 5628 5726 117843127 117843029 2.700000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G210200 chr3B 246151823 246161041 9218 False 17025.00 17025 100.00000 1 9219 1 chr3B.!!$F1 9218
1 TraesCS3B01G210200 chr3A 83232551 83234899 2348 False 3241.00 3241 91.84000 2433 4745 1 chr3A.!!$F1 2312
2 TraesCS3B01G210200 chr3A 208240302 208247023 6721 False 2684.25 3705 94.97125 1 9219 4 chr3A.!!$F3 9218
3 TraesCS3B01G210200 chr3A 725343689 725345203 1514 True 1639.00 1639 86.67100 3180 4656 1 chr3A.!!$R2 1476
4 TraesCS3B01G210200 chr3A 157041127 157043687 2560 False 1415.00 1949 89.64450 2433 4699 2 chr3A.!!$F2 2266
5 TraesCS3B01G210200 chr3A 732772582 732774837 2255 True 1253.50 1598 89.45700 2719 4704 2 chr3A.!!$R3 1985
6 TraesCS3B01G210200 chr3A 121472905 121473868 963 True 1181.00 1181 88.96900 3700 4656 1 chr3A.!!$R1 956
7 TraesCS3B01G210200 chr3D 170674129 170681461 7332 False 2149.60 3517 95.82380 1 9219 5 chr3D.!!$F2 9218
8 TraesCS3B01G210200 chr6A 221348241 221350536 2295 True 3136.00 3136 91.33800 2433 4745 1 chr6A.!!$R4 2312
9 TraesCS3B01G210200 chr6A 362226506 362228812 2306 False 3136.00 3136 91.17300 2418 4749 1 chr6A.!!$F4 2331
10 TraesCS3B01G210200 chr6A 324279081 324281383 2302 False 3007.00 3007 90.30700 2432 4747 1 chr6A.!!$F3 2315
11 TraesCS3B01G210200 chr6A 17930587 17932075 1488 False 1703.00 1703 87.60800 3180 4656 1 chr6A.!!$F1 1476
12 TraesCS3B01G210200 chr6A 223557744 223560011 2267 False 1538.00 2021 91.06900 2432 4747 2 chr6A.!!$F6 2315
13 TraesCS3B01G210200 chr6A 117064188 117065379 1191 True 1478.00 1478 89.37200 3180 4349 1 chr6A.!!$R2 1169
14 TraesCS3B01G210200 chr6A 324267025 324267923 898 False 1205.00 1205 90.67200 2427 3347 1 chr6A.!!$F2 920
15 TraesCS3B01G210200 chr6A 19837519 19840409 2890 False 865.00 1604 89.26150 2572 5719 2 chr6A.!!$F5 3147
16 TraesCS3B01G210200 chr4A 743144039 743145551 1512 True 2250.00 2250 93.66300 2461 3960 1 chr4A.!!$R1 1499
17 TraesCS3B01G210200 chr4A 18296061 18297558 1497 False 1849.00 1849 89.22200 3180 4656 1 chr4A.!!$F1 1476
18 TraesCS3B01G210200 chr7A 206968624 206970002 1378 False 1722.00 1722 89.51600 3302 4656 1 chr7A.!!$F1 1354
19 TraesCS3B01G210200 chr7A 17712043 17713400 1357 True 1570.00 1570 87.87400 3327 4664 1 chr7A.!!$R1 1337
20 TraesCS3B01G210200 chr7A 622337711 622340231 2520 True 1402.50 1916 89.00100 2432 4704 2 chr7A.!!$R4 2272
21 TraesCS3B01G210200 chr5A 115022273 115023830 1557 True 1812.00 1812 87.97200 2433 3982 1 chr5A.!!$R1 1549
22 TraesCS3B01G210200 chr5A 174585836 174587364 1528 True 1652.00 1652 86.47400 3180 4704 1 chr5A.!!$R2 1524
23 TraesCS3B01G210200 chr5A 11060040 11060617 577 False 704.00 704 88.88900 4082 4656 1 chr5A.!!$F1 574
24 TraesCS3B01G210200 chr5B 52640180 52641664 1484 False 1783.00 1783 88.60200 3180 4656 1 chr5B.!!$F1 1476
25 TraesCS3B01G210200 chr2A 20636428 20637933 1505 False 1724.00 1724 87.63800 2449 3948 1 chr2A.!!$F1 1499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 110 0.040204 CACCAATTCTCCCCTGCCTT 59.960 55.000 0.00 0.00 0.00 4.35 F
894 1142 0.413037 ATTTTGAGTCATGGGGCCCA 59.587 50.000 30.97 30.97 38.19 5.36 F
1245 1523 0.037877 TCGAGAGGAACGAGGAGGTT 59.962 55.000 0.00 0.00 34.85 3.50 F
1251 1529 0.108281 GGAACGAGGAGGTTGTAGCC 60.108 60.000 0.00 0.00 0.00 3.93 F
1647 1930 0.407918 TGAGGGTTTGGTCATTCCCC 59.592 55.000 0.00 0.00 40.70 4.81 F
2969 5595 1.080025 GCTTGTAGGGTTCGTCGCT 60.080 57.895 0.00 5.52 42.08 4.93 F
4405 7380 0.107508 CATGATCGGCCTGGTGTCTT 60.108 55.000 0.00 0.00 0.00 3.01 F
4676 7686 3.123804 CCTAGATAACTTGCGCACGAAT 58.876 45.455 21.81 12.97 0.00 3.34 F
5600 8611 1.948508 TGGCATGCGACACTTTCAC 59.051 52.632 12.44 0.00 0.00 3.18 F
5601 8612 1.154413 GGCATGCGACACTTTCACG 60.154 57.895 12.44 0.00 0.00 4.35 F
5768 8779 1.611673 CCTGTCACCCAGCCAGTTTAG 60.612 57.143 0.00 0.00 40.06 1.85 F
6968 10239 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1242 1520 0.253327 CCTCCTCCTTGGCTACAACC 59.747 60.000 0.00 0.00 35.26 3.77 R
2470 2787 0.759346 CCTCCATCCTTCCCTTACCG 59.241 60.000 0.00 0.00 0.00 4.02 R
2999 5625 1.043116 CACCCCAGCCGAGATACTCA 61.043 60.000 0.00 0.00 0.00 3.41 R
3111 5758 2.428890 CTCACTACCTTCGCTGGATTCT 59.571 50.000 0.58 0.00 0.00 2.40 R
3811 6475 2.815308 GTCACCATCGCCGATCCT 59.185 61.111 0.00 0.00 0.00 3.24 R
4456 7431 0.759346 CCTCCATCCTTCCCTTACCG 59.241 60.000 0.00 0.00 0.00 4.02 R
5413 8424 1.067425 CGGGTGACATCGTAACCTCAA 60.067 52.381 0.68 0.00 37.24 3.02 R
5602 8613 1.334960 CGCACTGATGGTTGGTGAAAC 60.335 52.381 0.00 0.00 38.12 2.78 R
6951 10222 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59 R
6959 10230 0.036765 TGACAAGGATTTCCGGACGG 60.037 55.000 1.83 3.96 42.08 4.79 R
7063 10334 0.179009 TATGGTACTCCCTCCGTCCG 60.179 60.000 0.00 0.00 0.00 4.79 R
8843 12120 0.182537 CACTGTGGGTTCCCAAGACA 59.817 55.000 12.54 5.88 37.91 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 1.229428 CATCGCATCACCCACCATAC 58.771 55.000 0.00 0.00 0.00 2.39
82 83 2.614259 TCCATCTCCCTTATCAGCTCC 58.386 52.381 0.00 0.00 0.00 4.70
109 110 0.040204 CACCAATTCTCCCCTGCCTT 59.960 55.000 0.00 0.00 0.00 4.35
268 269 1.906824 ACGGTCGTCCACCTGACAT 60.907 57.895 0.00 0.00 44.71 3.06
366 367 0.538118 CGATAGGTGGACGGGGAAAA 59.462 55.000 0.00 0.00 0.00 2.29
394 395 0.817654 CGTGATCCTCTACACCAGCA 59.182 55.000 0.00 0.00 34.05 4.41
787 791 2.027605 CGGTGTGAGTGCGAGTGT 59.972 61.111 0.00 0.00 0.00 3.55
789 793 1.227263 GGTGTGAGTGCGAGTGTGT 60.227 57.895 0.00 0.00 0.00 3.72
791 795 0.806102 GTGTGAGTGCGAGTGTGTGT 60.806 55.000 0.00 0.00 0.00 3.72
793 797 0.806102 GTGAGTGCGAGTGTGTGTGT 60.806 55.000 0.00 0.00 0.00 3.72
795 799 2.094126 GAGTGCGAGTGTGTGTGTGC 62.094 60.000 0.00 0.00 0.00 4.57
796 800 3.261216 TGCGAGTGTGTGTGTGCG 61.261 61.111 0.00 0.00 0.00 5.34
797 801 3.261951 GCGAGTGTGTGTGTGCGT 61.262 61.111 0.00 0.00 0.00 5.24
798 802 2.620459 CGAGTGTGTGTGTGCGTG 59.380 61.111 0.00 0.00 0.00 5.34
801 805 3.582120 GTGTGTGTGTGCGTGGGG 61.582 66.667 0.00 0.00 0.00 4.96
806 810 3.551407 TGTGTGCGTGGGGCTGTA 61.551 61.111 0.00 0.00 44.05 2.74
807 811 2.046314 GTGTGCGTGGGGCTGTAT 60.046 61.111 0.00 0.00 44.05 2.29
808 812 2.106683 GTGTGCGTGGGGCTGTATC 61.107 63.158 0.00 0.00 44.05 2.24
879 1127 5.730550 TGTATCCGAGCTCACTTGTATTTT 58.269 37.500 15.40 0.00 0.00 1.82
880 1128 5.580691 TGTATCCGAGCTCACTTGTATTTTG 59.419 40.000 15.40 0.00 0.00 2.44
881 1129 4.265904 TCCGAGCTCACTTGTATTTTGA 57.734 40.909 15.40 0.00 0.00 2.69
882 1130 4.245660 TCCGAGCTCACTTGTATTTTGAG 58.754 43.478 15.40 0.00 39.89 3.02
883 1131 3.997021 CCGAGCTCACTTGTATTTTGAGT 59.003 43.478 15.40 0.00 39.23 3.41
884 1132 4.092091 CCGAGCTCACTTGTATTTTGAGTC 59.908 45.833 15.40 0.00 39.23 3.36
885 1133 4.686091 CGAGCTCACTTGTATTTTGAGTCA 59.314 41.667 15.40 0.00 39.23 3.41
886 1134 5.349817 CGAGCTCACTTGTATTTTGAGTCAT 59.650 40.000 15.40 0.00 39.23 3.06
888 1136 5.413833 AGCTCACTTGTATTTTGAGTCATGG 59.586 40.000 0.00 0.00 39.23 3.66
889 1137 5.392380 GCTCACTTGTATTTTGAGTCATGGG 60.392 44.000 0.00 0.00 39.23 4.00
890 1138 5.009631 TCACTTGTATTTTGAGTCATGGGG 58.990 41.667 0.00 0.00 0.00 4.96
892 1140 2.733956 TGTATTTTGAGTCATGGGGCC 58.266 47.619 0.00 0.00 0.00 5.80
893 1141 2.031870 GTATTTTGAGTCATGGGGCCC 58.968 52.381 18.17 18.17 0.00 5.80
894 1142 0.413037 ATTTTGAGTCATGGGGCCCA 59.587 50.000 30.97 30.97 38.19 5.36
1242 1520 1.601903 CAGATCGAGAGGAACGAGGAG 59.398 57.143 0.00 0.00 42.81 3.69
1245 1523 0.037877 TCGAGAGGAACGAGGAGGTT 59.962 55.000 0.00 0.00 34.85 3.50
1251 1529 0.108281 GGAACGAGGAGGTTGTAGCC 60.108 60.000 0.00 0.00 0.00 3.93
1529 1809 5.940470 AGGACATTGTTGAGATAGTGGAAAC 59.060 40.000 0.00 0.00 0.00 2.78
1531 1811 6.128172 GGACATTGTTGAGATAGTGGAAACTG 60.128 42.308 0.00 0.00 0.00 3.16
1647 1930 0.407918 TGAGGGTTTGGTCATTCCCC 59.592 55.000 0.00 0.00 40.70 4.81
1655 1938 4.377897 GTTTGGTCATTCCCCTAGATACG 58.622 47.826 0.00 0.00 34.77 3.06
1662 1945 4.338400 TCATTCCCCTAGATACGCATATCG 59.662 45.833 0.00 0.00 41.95 2.92
1712 1995 5.095490 GCGGATCATGTTTGGACTTTAAAG 58.905 41.667 13.76 13.76 0.00 1.85
1926 2209 1.338136 TGCTAAGGCCCTCAGGTAGC 61.338 60.000 0.00 5.40 38.11 3.58
2004 2288 1.936547 CCTTTTCTGGAGACATAGCGC 59.063 52.381 0.00 0.00 41.51 5.92
2077 2361 4.037446 CCTGGCTGTTTTGTTTAACTGCTA 59.963 41.667 14.85 10.00 46.15 3.49
2079 2363 6.072175 CCTGGCTGTTTTGTTTAACTGCTATA 60.072 38.462 14.85 5.11 46.15 1.31
2120 2404 2.426522 GCTATTGCTTCAGTGTGACCA 58.573 47.619 0.00 0.00 36.03 4.02
2121 2405 3.012518 GCTATTGCTTCAGTGTGACCAT 58.987 45.455 0.00 0.00 36.03 3.55
2139 2424 3.704061 ACCATGGCCATAATTTTACGCTT 59.296 39.130 20.30 0.00 0.00 4.68
2141 2426 3.791973 TGGCCATAATTTTACGCTTGG 57.208 42.857 0.00 0.00 0.00 3.61
2178 2481 4.194640 ACATTTATCATGTTCAGCGAGCT 58.805 39.130 0.00 0.00 0.00 4.09
2192 2495 4.083855 TCAGCGAGCTCTGTAATTTTTGTG 60.084 41.667 12.85 0.00 35.63 3.33
2212 2515 7.537596 TTGTGTTGGATAGGAAATTGTGAAT 57.462 32.000 0.00 0.00 0.00 2.57
2691 5279 3.555956 CCTAGATAACTTGCGCACGAATT 59.444 43.478 21.81 7.91 0.00 2.17
2913 5539 1.115467 CCTCCGGAATGTAGTCTGCT 58.885 55.000 5.23 0.00 0.00 4.24
2969 5595 1.080025 GCTTGTAGGGTTCGTCGCT 60.080 57.895 0.00 5.52 42.08 4.93
3288 5937 2.125673 ACAAATAGCTCGGCGCGT 60.126 55.556 8.43 0.00 45.59 6.01
3543 6192 1.516365 CGAGCCAGGTACGATCCGAT 61.516 60.000 0.00 0.00 0.00 4.18
3885 6549 4.143333 CTAGACGCGGGTGGTGGG 62.143 72.222 10.96 0.00 0.00 4.61
4207 7161 2.435586 CAAGCTCCCGCAGAGTGG 60.436 66.667 2.95 0.00 45.21 4.00
4208 7162 2.925170 AAGCTCCCGCAGAGTGGT 60.925 61.111 2.95 0.00 45.21 4.16
4229 7183 1.379977 ACATCTCCTCGGGCGAGAA 60.380 57.895 7.45 0.00 44.53 2.87
4230 7184 0.757188 ACATCTCCTCGGGCGAGAAT 60.757 55.000 7.45 0.00 44.53 2.40
4358 7333 2.041922 CGAGGGGGAGGTGGATGA 60.042 66.667 0.00 0.00 0.00 2.92
4405 7380 0.107508 CATGATCGGCCTGGTGTCTT 60.108 55.000 0.00 0.00 0.00 3.01
4676 7686 3.123804 CCTAGATAACTTGCGCACGAAT 58.876 45.455 21.81 12.97 0.00 3.34
4858 7868 8.524487 ACTATTGTCCTACTGAACTGAAGTAAG 58.476 37.037 0.00 0.00 29.96 2.34
4947 7957 7.004086 TGAACTTTTCAAGAGTAATCCCACAT 58.996 34.615 0.00 0.00 36.59 3.21
4994 8004 8.244113 GGGAATAGTCATTTAAAGGTTCAACTG 58.756 37.037 0.00 0.00 0.00 3.16
5000 8010 7.942341 AGTCATTTAAAGGTTCAACTGTATCCA 59.058 33.333 0.00 0.00 0.00 3.41
5012 8022 9.378551 GTTCAACTGTATCCAAAGTATCATGTA 57.621 33.333 0.00 0.00 0.00 2.29
5413 8424 4.104383 ACAATGTCTGTGGAACCAAGAT 57.896 40.909 0.00 0.00 36.69 2.40
5451 8462 6.529477 GTCACCCGAACTGTACTTATACTTTC 59.471 42.308 0.00 0.00 32.00 2.62
5599 8610 4.471761 TGGCATGCGACACTTTCA 57.528 50.000 12.44 0.00 0.00 2.69
5600 8611 1.948508 TGGCATGCGACACTTTCAC 59.051 52.632 12.44 0.00 0.00 3.18
5601 8612 1.154413 GGCATGCGACACTTTCACG 60.154 57.895 12.44 0.00 0.00 4.35
5602 8613 1.154413 GCATGCGACACTTTCACGG 60.154 57.895 0.00 0.00 0.00 4.94
5632 8643 4.137116 ACCATCAGTGCGCTAAAAGATA 57.863 40.909 9.73 0.00 0.00 1.98
5633 8644 3.871594 ACCATCAGTGCGCTAAAAGATAC 59.128 43.478 9.73 0.00 0.00 2.24
5634 8645 4.122776 CCATCAGTGCGCTAAAAGATACT 58.877 43.478 9.73 0.00 0.00 2.12
5635 8646 4.210120 CCATCAGTGCGCTAAAAGATACTC 59.790 45.833 9.73 0.00 0.00 2.59
5636 8647 3.782046 TCAGTGCGCTAAAAGATACTCC 58.218 45.455 9.73 0.00 0.00 3.85
5637 8648 2.866762 CAGTGCGCTAAAAGATACTCCC 59.133 50.000 9.73 0.00 0.00 4.30
5638 8649 2.766828 AGTGCGCTAAAAGATACTCCCT 59.233 45.455 9.73 0.00 0.00 4.20
5639 8650 3.124560 GTGCGCTAAAAGATACTCCCTC 58.875 50.000 9.73 0.00 0.00 4.30
5640 8651 3.031736 TGCGCTAAAAGATACTCCCTCT 58.968 45.455 9.73 0.00 0.00 3.69
5641 8652 3.181475 TGCGCTAAAAGATACTCCCTCTG 60.181 47.826 9.73 0.00 0.00 3.35
5642 8653 3.181474 GCGCTAAAAGATACTCCCTCTGT 60.181 47.826 0.00 0.00 0.00 3.41
5768 8779 1.611673 CCTGTCACCCAGCCAGTTTAG 60.612 57.143 0.00 0.00 40.06 1.85
6095 9106 6.713731 ATACCTAAAAACTTGGGAGGAAGA 57.286 37.500 0.00 0.00 0.00 2.87
6388 9399 6.914654 AGAGCTTCATCATTAGCATCTCTA 57.085 37.500 0.00 0.00 39.85 2.43
6696 9707 2.429610 AGTGTGTGTTCACTACCGTCTT 59.570 45.455 4.59 0.00 45.31 3.01
6940 10211 2.554032 CCGCTTCTTTGTGAACTGGAAT 59.446 45.455 0.00 0.00 0.00 3.01
6946 10217 6.348050 GCTTCTTTGTGAACTGGAATGAGTAG 60.348 42.308 0.00 0.00 0.00 2.57
6951 10222 4.263462 TGTGAACTGGAATGAGTAGCCAAT 60.263 41.667 0.00 0.00 0.00 3.16
6952 10223 5.045942 TGTGAACTGGAATGAGTAGCCAATA 60.046 40.000 0.00 0.00 0.00 1.90
6953 10224 5.294552 GTGAACTGGAATGAGTAGCCAATAC 59.705 44.000 0.00 0.00 34.30 1.89
6961 10232 1.705873 AGTAGCCAATACTCCCTCCG 58.294 55.000 0.00 0.00 40.99 4.63
6962 10233 1.063114 AGTAGCCAATACTCCCTCCGT 60.063 52.381 0.00 0.00 40.99 4.69
6963 10234 1.340568 GTAGCCAATACTCCCTCCGTC 59.659 57.143 0.00 0.00 0.00 4.79
6964 10235 1.049289 AGCCAATACTCCCTCCGTCC 61.049 60.000 0.00 0.00 0.00 4.79
6965 10236 1.740285 CCAATACTCCCTCCGTCCG 59.260 63.158 0.00 0.00 0.00 4.79
6966 10237 1.740285 CAATACTCCCTCCGTCCGG 59.260 63.158 0.00 0.00 0.00 5.14
6967 10238 0.754217 CAATACTCCCTCCGTCCGGA 60.754 60.000 0.00 0.00 42.90 5.14
6968 10239 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
6969 10240 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
6970 10241 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
6971 10242 1.328430 ACTCCCTCCGTCCGGAAATC 61.328 60.000 5.23 0.00 44.66 2.17
6972 10243 2.029307 CTCCCTCCGTCCGGAAATCC 62.029 65.000 5.23 0.00 44.66 3.01
6973 10244 2.064581 CCCTCCGTCCGGAAATCCT 61.065 63.158 5.23 0.00 44.66 3.24
6974 10245 1.623542 CCCTCCGTCCGGAAATCCTT 61.624 60.000 5.23 0.00 44.66 3.36
6975 10246 0.462047 CCTCCGTCCGGAAATCCTTG 60.462 60.000 5.23 0.00 44.66 3.61
6976 10247 0.249398 CTCCGTCCGGAAATCCTTGT 59.751 55.000 5.23 0.00 44.66 3.16
6977 10248 0.248289 TCCGTCCGGAAATCCTTGTC 59.752 55.000 5.23 0.00 42.05 3.18
6978 10249 0.036765 CCGTCCGGAAATCCTTGTCA 60.037 55.000 5.23 0.00 37.50 3.58
6979 10250 1.406887 CCGTCCGGAAATCCTTGTCAT 60.407 52.381 5.23 0.00 37.50 3.06
6980 10251 1.933853 CGTCCGGAAATCCTTGTCATC 59.066 52.381 5.23 0.00 0.00 2.92
6981 10252 2.676750 CGTCCGGAAATCCTTGTCATCA 60.677 50.000 5.23 0.00 0.00 3.07
6982 10253 3.343617 GTCCGGAAATCCTTGTCATCAA 58.656 45.455 5.23 0.00 0.00 2.57
6983 10254 3.756434 GTCCGGAAATCCTTGTCATCAAA 59.244 43.478 5.23 0.00 32.87 2.69
6984 10255 4.217550 GTCCGGAAATCCTTGTCATCAAAA 59.782 41.667 5.23 0.00 32.87 2.44
6985 10256 5.016173 TCCGGAAATCCTTGTCATCAAAAT 58.984 37.500 0.00 0.00 32.87 1.82
6986 10257 5.125417 TCCGGAAATCCTTGTCATCAAAATC 59.875 40.000 0.00 0.00 32.87 2.17
6987 10258 5.105797 CCGGAAATCCTTGTCATCAAAATCA 60.106 40.000 0.00 0.00 32.87 2.57
6988 10259 6.406177 CCGGAAATCCTTGTCATCAAAATCAT 60.406 38.462 0.00 0.00 32.87 2.45
6989 10260 7.037438 CGGAAATCCTTGTCATCAAAATCATT 58.963 34.615 0.00 0.00 32.87 2.57
6990 10261 8.190122 CGGAAATCCTTGTCATCAAAATCATTA 58.810 33.333 0.00 0.00 32.87 1.90
6991 10262 9.874205 GGAAATCCTTGTCATCAAAATCATTAA 57.126 29.630 0.00 0.00 32.87 1.40
6995 10266 9.880157 ATCCTTGTCATCAAAATCATTAAAAGG 57.120 29.630 0.00 0.00 32.87 3.11
6996 10267 8.313292 TCCTTGTCATCAAAATCATTAAAAGGG 58.687 33.333 0.00 0.00 32.87 3.95
6997 10268 7.550196 CCTTGTCATCAAAATCATTAAAAGGGG 59.450 37.037 0.00 0.00 32.87 4.79
6998 10269 7.789202 TGTCATCAAAATCATTAAAAGGGGA 57.211 32.000 0.00 0.00 0.00 4.81
6999 10270 8.378115 TGTCATCAAAATCATTAAAAGGGGAT 57.622 30.769 0.00 0.00 0.00 3.85
7000 10271 8.259411 TGTCATCAAAATCATTAAAAGGGGATG 58.741 33.333 0.00 0.00 0.00 3.51
7001 10272 8.260114 GTCATCAAAATCATTAAAAGGGGATGT 58.740 33.333 0.00 0.00 32.47 3.06
7002 10273 9.486123 TCATCAAAATCATTAAAAGGGGATGTA 57.514 29.630 0.00 0.00 32.47 2.29
7005 10276 9.713684 TCAAAATCATTAAAAGGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
7010 10281 7.667557 TCATTAAAAGGGGATGTATCTAGACG 58.332 38.462 0.00 0.00 0.00 4.18
7011 10282 7.289317 TCATTAAAAGGGGATGTATCTAGACGT 59.711 37.037 0.00 0.00 0.00 4.34
7012 10283 5.952347 AAAAGGGGATGTATCTAGACGTT 57.048 39.130 0.00 0.00 0.00 3.99
7013 10284 5.952347 AAAGGGGATGTATCTAGACGTTT 57.048 39.130 0.00 0.00 0.00 3.60
7014 10285 5.952347 AAGGGGATGTATCTAGACGTTTT 57.048 39.130 0.00 0.00 0.00 2.43
7015 10286 5.952347 AGGGGATGTATCTAGACGTTTTT 57.048 39.130 0.00 0.00 0.00 1.94
7043 10314 8.832735 AGTTCTAGATACAACCCTTTTTATCCA 58.167 33.333 0.00 0.00 0.00 3.41
7044 10315 9.628500 GTTCTAGATACAACCCTTTTTATCCAT 57.372 33.333 0.00 0.00 0.00 3.41
7049 10320 9.320295 AGATACAACCCTTTTTATCCATTTTGA 57.680 29.630 0.00 0.00 0.00 2.69
7050 10321 9.936759 GATACAACCCTTTTTATCCATTTTGAA 57.063 29.630 0.00 0.00 0.00 2.69
7051 10322 9.942850 ATACAACCCTTTTTATCCATTTTGAAG 57.057 29.630 0.00 0.00 0.00 3.02
7052 10323 8.028652 ACAACCCTTTTTATCCATTTTGAAGA 57.971 30.769 0.00 0.00 0.00 2.87
7053 10324 7.931407 ACAACCCTTTTTATCCATTTTGAAGAC 59.069 33.333 0.00 0.00 0.00 3.01
7054 10325 7.610580 ACCCTTTTTATCCATTTTGAAGACA 57.389 32.000 0.00 0.00 0.00 3.41
7055 10326 8.028652 ACCCTTTTTATCCATTTTGAAGACAA 57.971 30.769 0.00 0.00 0.00 3.18
7056 10327 8.150296 ACCCTTTTTATCCATTTTGAAGACAAG 58.850 33.333 0.00 0.00 37.32 3.16
7057 10328 8.150296 CCCTTTTTATCCATTTTGAAGACAAGT 58.850 33.333 0.00 0.00 37.32 3.16
7064 10335 8.970691 ATCCATTTTGAAGACAAGTATTTTCG 57.029 30.769 0.00 0.00 37.32 3.46
7065 10336 7.367285 TCCATTTTGAAGACAAGTATTTTCGG 58.633 34.615 0.00 0.00 37.32 4.30
7066 10337 7.229707 TCCATTTTGAAGACAAGTATTTTCGGA 59.770 33.333 0.00 0.00 37.32 4.55
7067 10338 7.326063 CCATTTTGAAGACAAGTATTTTCGGAC 59.674 37.037 0.00 0.00 37.32 4.79
7068 10339 5.585500 TTGAAGACAAGTATTTTCGGACG 57.415 39.130 0.00 0.00 0.00 4.79
7069 10340 3.991773 TGAAGACAAGTATTTTCGGACGG 59.008 43.478 0.00 0.00 0.00 4.79
7070 10341 3.947910 AGACAAGTATTTTCGGACGGA 57.052 42.857 0.00 0.00 0.00 4.69
7071 10342 3.846360 AGACAAGTATTTTCGGACGGAG 58.154 45.455 0.00 0.00 0.00 4.63
7072 10343 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
7073 10344 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
7074 10345 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
7075 10346 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
7301 10572 7.908827 TGTGACGGTAAATGCTTCTTTTATA 57.091 32.000 0.00 0.00 0.00 0.98
7438 10709 6.013206 TGGAACCCAGTAAAGCACTTTCTATA 60.013 38.462 0.00 0.00 34.26 1.31
7560 10831 7.413988 GCAACAATTCTACCTTGCTTTTGTTTT 60.414 33.333 0.00 0.00 36.81 2.43
7562 10833 9.660180 AACAATTCTACCTTGCTTTTGTTTTAA 57.340 25.926 0.00 0.00 33.40 1.52
7564 10835 9.313118 CAATTCTACCTTGCTTTTGTTTTAAGT 57.687 29.630 0.00 0.00 0.00 2.24
7663 10934 9.330220 GGTAATCCCCCTTAGATATGTAACTTA 57.670 37.037 0.00 0.00 0.00 2.24
7977 11249 4.921470 CGTAGGACGATGAAAATGTTGT 57.079 40.909 0.00 0.00 46.05 3.32
8015 11289 0.035056 AAAGGCTTGGTGATCGAGGG 60.035 55.000 0.00 0.00 0.00 4.30
8040 11314 6.016610 GGTTACTCTGTTTGCATTTTCACCTA 60.017 38.462 0.00 0.00 0.00 3.08
8068 11342 5.937540 TGTGTAAAACCTGTGTATCTCATGG 59.062 40.000 0.00 0.00 0.00 3.66
8133 11407 6.697395 TCTTATGTACTGAGCTTTAACTGCA 58.303 36.000 0.00 0.00 0.00 4.41
8149 11423 3.728845 ACTGCACTGTGAAACTATTCGT 58.271 40.909 12.86 0.00 38.46 3.85
8153 11427 3.799035 CACTGTGAAACTATTCGTGCAC 58.201 45.455 6.82 6.82 38.46 4.57
8154 11428 2.806244 ACTGTGAAACTATTCGTGCACC 59.194 45.455 12.15 0.00 38.46 5.01
8513 11790 2.331132 GCAAGCTCCACTGCAGGTC 61.331 63.158 19.93 1.80 34.99 3.85
8539 11816 5.047731 GTGGCTATTCAAAAAGCTCTCCTTT 60.048 40.000 0.00 0.00 45.49 3.11
8559 11836 2.917933 TGGTCTTTTCCCATATCGCAG 58.082 47.619 0.00 0.00 0.00 5.18
8627 11904 6.882610 TGCCAAAATGTATTAGATAGGCAG 57.117 37.500 0.00 0.00 43.93 4.85
8750 12027 1.423584 TGCTCTCACCCTTGAACTGA 58.576 50.000 0.00 0.00 0.00 3.41
8763 12040 4.500375 CCTTGAACTGAAAAGGCTTGAAGG 60.500 45.833 0.00 0.00 36.78 3.46
8813 12090 4.273318 GAGTTGCCCATATGGAACTCTTT 58.727 43.478 31.00 13.81 42.22 2.52
8828 12105 3.589654 CTTTGCTGCCTCGTCGGGA 62.590 63.158 0.00 0.00 0.00 5.14
8843 12120 1.668294 GGGATCATCGATGCGGAGT 59.332 57.895 20.81 3.87 31.06 3.85
8896 12173 4.639078 TGTCATCTTTCTGTGGATTGGA 57.361 40.909 0.00 0.00 0.00 3.53
8903 12180 2.940514 TCTGTGGATTGGAGTCCCTA 57.059 50.000 6.74 0.00 37.48 3.53
8966 12243 1.070786 GTTGCTTGACCCAGACGGA 59.929 57.895 0.00 0.00 34.64 4.69
8978 12255 0.752658 CAGACGGAGATATGCACCCA 59.247 55.000 0.00 0.00 0.00 4.51
8989 12266 1.936767 ATGCACCCATTGGTCCCGAT 61.937 55.000 1.20 0.00 45.57 4.18
9197 12474 2.355310 CGGCACCATTACAGGAAGGTTA 60.355 50.000 0.00 0.00 30.44 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 1.635663 GGAGAATTGGTGACGTGGCG 61.636 60.000 0.00 0.00 0.00 5.69
109 110 0.871722 CGGTTGTGAATTTGCTCGGA 59.128 50.000 0.00 0.00 0.00 4.55
268 269 2.492088 CGATATAATGACAGCGAGGGGA 59.508 50.000 0.00 0.00 0.00 4.81
366 367 0.033601 AGAGGATCACGGAGCTGTCT 60.034 55.000 0.00 0.00 37.82 3.41
394 395 4.146075 GCGCTGGAGCTGCTCTCT 62.146 66.667 27.09 0.00 41.60 3.10
550 551 4.335647 CGCACCCACCTCCTTGCT 62.336 66.667 0.00 0.00 32.56 3.91
789 793 2.796483 GATACAGCCCCACGCACACA 62.796 60.000 0.00 0.00 41.38 3.72
791 795 2.267642 GATACAGCCCCACGCACA 59.732 61.111 0.00 0.00 41.38 4.57
793 797 3.006133 TGGATACAGCCCCACGCA 61.006 61.111 0.00 0.00 46.17 5.24
806 810 3.899981 TTCACTGCGGCGCTTGGAT 62.900 57.895 33.26 10.68 0.00 3.41
807 811 4.617520 TTCACTGCGGCGCTTGGA 62.618 61.111 33.26 21.24 0.00 3.53
808 812 4.093952 CTTCACTGCGGCGCTTGG 62.094 66.667 33.26 23.20 0.00 3.61
840 844 1.131638 TACAGCCCAGCCCTAATGAG 58.868 55.000 0.00 0.00 0.00 2.90
843 847 1.068121 GGATACAGCCCAGCCCTAAT 58.932 55.000 0.00 0.00 0.00 1.73
879 1127 1.352622 GGTATGGGCCCCATGACTCA 61.353 60.000 26.08 1.02 44.84 3.41
880 1128 1.352622 TGGTATGGGCCCCATGACTC 61.353 60.000 26.08 12.19 44.84 3.36
881 1129 1.308657 TGGTATGGGCCCCATGACT 60.309 57.895 26.08 1.43 44.84 3.41
882 1130 1.151450 CTGGTATGGGCCCCATGAC 59.849 63.158 26.08 17.42 44.84 3.06
883 1131 0.403304 ATCTGGTATGGGCCCCATGA 60.403 55.000 26.08 14.12 44.84 3.07
884 1132 0.038744 GATCTGGTATGGGCCCCATG 59.961 60.000 26.08 8.57 44.84 3.66
885 1133 0.103715 AGATCTGGTATGGGCCCCAT 60.104 55.000 21.37 21.37 46.99 4.00
886 1134 0.768221 GAGATCTGGTATGGGCCCCA 60.768 60.000 22.27 4.05 38.19 4.96
888 1136 1.439543 AAGAGATCTGGTATGGGCCC 58.560 55.000 17.59 17.59 0.00 5.80
889 1137 2.487986 CCAAAGAGATCTGGTATGGGCC 60.488 54.545 0.00 0.00 0.00 5.80
890 1138 2.487986 CCCAAAGAGATCTGGTATGGGC 60.488 54.545 15.71 0.00 39.57 5.36
892 1140 2.487986 GGCCCAAAGAGATCTGGTATGG 60.488 54.545 0.00 3.17 0.00 2.74
893 1141 2.441001 AGGCCCAAAGAGATCTGGTATG 59.559 50.000 0.00 0.00 0.00 2.39
894 1142 2.708325 GAGGCCCAAAGAGATCTGGTAT 59.292 50.000 0.00 0.00 0.00 2.73
1224 1502 0.948678 CCTCCTCGTTCCTCTCGATC 59.051 60.000 0.00 0.00 36.73 3.69
1242 1520 0.253327 CCTCCTCCTTGGCTACAACC 59.747 60.000 0.00 0.00 35.26 3.77
1245 1523 0.413832 AGACCTCCTCCTTGGCTACA 59.586 55.000 0.00 0.00 35.26 2.74
1477 1755 3.838317 AGATTTAGGGCATAGGCATACGA 59.162 43.478 0.15 0.00 43.71 3.43
1529 1809 7.013274 CCCCAACATAATCTAAACATGTACCAG 59.987 40.741 0.00 0.00 32.70 4.00
1531 1811 7.057894 TCCCCAACATAATCTAAACATGTACC 58.942 38.462 0.00 0.00 32.70 3.34
1655 1938 9.360093 AGCTATAGAATTCAAAGTACGATATGC 57.640 33.333 8.44 1.49 0.00 3.14
1688 1971 1.086696 AAGTCCAAACATGATCCGCG 58.913 50.000 0.00 0.00 0.00 6.46
1712 1995 8.252964 CAGTAACTCTGTCTAACCAAATTACC 57.747 38.462 0.00 0.00 39.17 2.85
1855 2138 5.412594 TCAGAGCGCAATCTCATTTTAAACT 59.587 36.000 11.47 0.00 35.59 2.66
1914 2197 2.689034 ACCTGGCTACCTGAGGGC 60.689 66.667 2.38 0.00 35.63 5.19
1926 2209 6.375455 AGTGATTAAGCAAAACATAGACCTGG 59.625 38.462 0.00 0.00 0.00 4.45
2077 2361 6.014669 AGCTGCTAAATGCTAGTTCTAGCTAT 60.015 38.462 25.49 16.91 43.20 2.97
2079 2363 4.100808 AGCTGCTAAATGCTAGTTCTAGCT 59.899 41.667 25.49 13.00 43.20 3.32
2120 2404 3.957497 TCCAAGCGTAAAATTATGGCCAT 59.043 39.130 24.45 24.45 0.00 4.40
2121 2405 3.357203 TCCAAGCGTAAAATTATGGCCA 58.643 40.909 8.56 8.56 0.00 5.36
2139 2424 0.759959 TGTTTGTAGGGCGACTTCCA 59.240 50.000 0.00 0.00 0.00 3.53
2141 2426 5.353123 TGATAAATGTTTGTAGGGCGACTTC 59.647 40.000 0.00 0.00 0.00 3.01
2178 2481 8.698973 TTCCTATCCAACACAAAAATTACAGA 57.301 30.769 0.00 0.00 0.00 3.41
2192 2495 9.573133 CAAACTATTCACAATTTCCTATCCAAC 57.427 33.333 0.00 0.00 0.00 3.77
2212 2515 5.865085 ACCACAAAGCAGACTATCAAACTA 58.135 37.500 0.00 0.00 0.00 2.24
2387 2704 7.655521 TTAGCCTTATCTAGTAACTTCAGCA 57.344 36.000 0.00 0.00 0.00 4.41
2470 2787 0.759346 CCTCCATCCTTCCCTTACCG 59.241 60.000 0.00 0.00 0.00 4.02
2691 5279 6.382919 AGCCCACAAGTTATCTTAGGTTAA 57.617 37.500 4.43 0.00 32.07 2.01
2851 5477 1.826024 CCCCAGATGTCGAGAAGGG 59.174 63.158 10.14 10.14 36.04 3.95
2999 5625 1.043116 CACCCCAGCCGAGATACTCA 61.043 60.000 0.00 0.00 0.00 3.41
3111 5758 2.428890 CTCACTACCTTCGCTGGATTCT 59.571 50.000 0.58 0.00 0.00 2.40
3811 6475 2.815308 GTCACCATCGCCGATCCT 59.185 61.111 0.00 0.00 0.00 3.24
4207 7161 2.413765 GCCCGAGGAGATGTCGAC 59.586 66.667 9.11 9.11 39.92 4.20
4208 7162 3.209812 CGCCCGAGGAGATGTCGA 61.210 66.667 0.00 0.00 39.92 4.20
4229 7183 2.923035 CGGATCCGCCCCCACTAT 60.923 66.667 23.37 0.00 0.00 2.12
4272 7244 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
4273 7245 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
4274 7246 4.514585 GCACCACCACCACCACCA 62.515 66.667 0.00 0.00 0.00 4.17
4343 7315 1.307343 CTGTCATCCACCTCCCCCT 60.307 63.158 0.00 0.00 0.00 4.79
4456 7431 0.759346 CCTCCATCCTTCCCTTACCG 59.241 60.000 0.00 0.00 0.00 4.02
4669 7679 8.448615 ACAAGTTATCTTAGGTTAAATTCGTGC 58.551 33.333 0.00 0.00 32.07 5.34
4676 7686 6.786122 AGCCCACAAGTTATCTTAGGTTAAA 58.214 36.000 4.43 0.00 32.07 1.52
4838 7848 5.135508 TGCTTACTTCAGTTCAGTAGGAC 57.864 43.478 0.00 0.00 0.00 3.85
4884 7894 7.422465 AATTTTGGTATGGATGCACATAACT 57.578 32.000 12.18 0.00 40.77 2.24
4963 7973 5.955959 ACCTTTAAATGACTATTCCCCAACC 59.044 40.000 0.00 0.00 0.00 3.77
5306 8317 7.023575 CAGACATTTTTCTACATTTTCCCGAG 58.976 38.462 0.00 0.00 0.00 4.63
5307 8318 6.488683 ACAGACATTTTTCTACATTTTCCCGA 59.511 34.615 0.00 0.00 0.00 5.14
5326 8337 4.670896 TCTGAACACATTGAGACAGACA 57.329 40.909 0.00 0.00 31.02 3.41
5413 8424 1.067425 CGGGTGACATCGTAACCTCAA 60.067 52.381 0.68 0.00 37.24 3.02
5451 8462 8.993121 GGTGTCCATCATCTATTAAACACTATG 58.007 37.037 0.00 0.00 36.78 2.23
5543 8554 1.568504 TGGTATCACCTCTGGTGGTC 58.431 55.000 15.65 7.32 44.79 4.02
5602 8613 1.334960 CGCACTGATGGTTGGTGAAAC 60.335 52.381 0.00 0.00 38.12 2.78
5632 8643 9.495382 ACTCTTATATTTCTTTACAGAGGGAGT 57.505 33.333 0.00 0.00 32.21 3.85
5633 8644 9.757227 CACTCTTATATTTCTTTACAGAGGGAG 57.243 37.037 0.00 0.00 32.92 4.30
5634 8645 9.268282 ACACTCTTATATTTCTTTACAGAGGGA 57.732 33.333 2.59 0.00 34.50 4.20
5635 8646 9.892130 AACACTCTTATATTTCTTTACAGAGGG 57.108 33.333 0.00 0.00 36.55 4.30
5700 8711 2.093606 GTCAGTTACTCCCCCTGTAAGC 60.094 54.545 0.00 0.00 31.54 3.09
5701 8712 3.170717 TGTCAGTTACTCCCCCTGTAAG 58.829 50.000 0.00 0.00 31.54 2.34
5757 8768 1.678970 GGGTGGGCTAAACTGGCTG 60.679 63.158 0.00 0.00 0.00 4.85
5937 8948 8.774546 AGTGAGTGAGAGATCCAGAAATTATA 57.225 34.615 0.00 0.00 0.00 0.98
6095 9106 6.438186 ACAAGATGAATCCCAAACCAAAAT 57.562 33.333 0.00 0.00 0.00 1.82
6388 9399 4.891756 GGATCCACAAAGTCATCATCCATT 59.108 41.667 6.95 0.00 0.00 3.16
6946 10217 1.446366 GGACGGAGGGAGTATTGGC 59.554 63.158 0.00 0.00 0.00 4.52
6951 10222 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
6952 10223 1.305887 ATTTCCGGACGGAGGGAGT 60.306 57.895 13.64 0.00 46.06 3.85
6953 10224 1.442148 GATTTCCGGACGGAGGGAG 59.558 63.158 13.64 0.00 46.06 4.30
6954 10225 2.062177 GGATTTCCGGACGGAGGGA 61.062 63.158 13.64 4.95 46.06 4.20
6955 10226 1.623542 AAGGATTTCCGGACGGAGGG 61.624 60.000 13.64 0.00 46.06 4.30
6956 10227 0.462047 CAAGGATTTCCGGACGGAGG 60.462 60.000 13.64 0.00 46.06 4.30
6957 10228 0.249398 ACAAGGATTTCCGGACGGAG 59.751 55.000 13.64 3.15 46.06 4.63
6958 10229 0.248289 GACAAGGATTTCCGGACGGA 59.752 55.000 1.83 9.76 43.52 4.69
6959 10230 0.036765 TGACAAGGATTTCCGGACGG 60.037 55.000 1.83 3.96 42.08 4.79
6960 10231 1.933853 GATGACAAGGATTTCCGGACG 59.066 52.381 1.83 0.00 42.08 4.79
6961 10232 2.985896 TGATGACAAGGATTTCCGGAC 58.014 47.619 1.83 0.00 42.08 4.79
6962 10233 3.712016 TTGATGACAAGGATTTCCGGA 57.288 42.857 0.00 0.00 42.08 5.14
6963 10234 4.782019 TTTTGATGACAAGGATTTCCGG 57.218 40.909 0.00 0.00 42.08 5.14
6964 10235 5.953183 TGATTTTGATGACAAGGATTTCCG 58.047 37.500 0.00 0.00 42.08 4.30
6965 10236 9.874205 TTAATGATTTTGATGACAAGGATTTCC 57.126 29.630 0.00 0.00 37.32 3.13
6969 10240 9.880157 CCTTTTAATGATTTTGATGACAAGGAT 57.120 29.630 0.00 0.00 37.32 3.24
6970 10241 8.313292 CCCTTTTAATGATTTTGATGACAAGGA 58.687 33.333 0.00 0.00 37.32 3.36
6971 10242 7.550196 CCCCTTTTAATGATTTTGATGACAAGG 59.450 37.037 0.00 0.00 37.32 3.61
6972 10243 8.313292 TCCCCTTTTAATGATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
6973 10244 8.200024 TCCCCTTTTAATGATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
6974 10245 7.789202 TCCCCTTTTAATGATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
6975 10246 8.260114 ACATCCCCTTTTAATGATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
6976 10247 8.378115 ACATCCCCTTTTAATGATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
6979 10250 9.713684 AGATACATCCCCTTTTAATGATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
6984 10255 8.314751 CGTCTAGATACATCCCCTTTTAATGAT 58.685 37.037 0.00 0.00 0.00 2.45
6985 10256 7.289317 ACGTCTAGATACATCCCCTTTTAATGA 59.711 37.037 0.00 0.00 0.00 2.57
6986 10257 7.442656 ACGTCTAGATACATCCCCTTTTAATG 58.557 38.462 0.00 0.00 0.00 1.90
6987 10258 7.613551 ACGTCTAGATACATCCCCTTTTAAT 57.386 36.000 0.00 0.00 0.00 1.40
6988 10259 7.427989 AACGTCTAGATACATCCCCTTTTAA 57.572 36.000 0.00 0.00 0.00 1.52
6989 10260 7.427989 AAACGTCTAGATACATCCCCTTTTA 57.572 36.000 0.00 0.00 0.00 1.52
6990 10261 5.952347 AACGTCTAGATACATCCCCTTTT 57.048 39.130 0.00 0.00 0.00 2.27
6991 10262 5.952347 AAACGTCTAGATACATCCCCTTT 57.048 39.130 0.00 0.00 0.00 3.11
6992 10263 5.952347 AAAACGTCTAGATACATCCCCTT 57.048 39.130 0.00 0.00 0.00 3.95
6993 10264 5.952347 AAAAACGTCTAGATACATCCCCT 57.048 39.130 0.00 0.00 0.00 4.79
7017 10288 8.832735 TGGATAAAAAGGGTTGTATCTAGAACT 58.167 33.333 0.00 0.00 35.17 3.01
7018 10289 9.628500 ATGGATAAAAAGGGTTGTATCTAGAAC 57.372 33.333 0.00 0.00 35.17 3.01
7023 10294 9.320295 TCAAAATGGATAAAAAGGGTTGTATCT 57.680 29.630 0.00 0.00 35.17 1.98
7024 10295 9.936759 TTCAAAATGGATAAAAAGGGTTGTATC 57.063 29.630 0.00 0.00 34.35 2.24
7025 10296 9.942850 CTTCAAAATGGATAAAAAGGGTTGTAT 57.057 29.630 0.00 0.00 0.00 2.29
7026 10297 9.148879 TCTTCAAAATGGATAAAAAGGGTTGTA 57.851 29.630 0.00 0.00 0.00 2.41
7027 10298 7.931407 GTCTTCAAAATGGATAAAAAGGGTTGT 59.069 33.333 0.00 0.00 0.00 3.32
7028 10299 7.930865 TGTCTTCAAAATGGATAAAAAGGGTTG 59.069 33.333 0.00 0.00 0.00 3.77
7029 10300 8.028652 TGTCTTCAAAATGGATAAAAAGGGTT 57.971 30.769 0.00 0.00 0.00 4.11
7030 10301 7.610580 TGTCTTCAAAATGGATAAAAAGGGT 57.389 32.000 0.00 0.00 0.00 4.34
7031 10302 8.150296 ACTTGTCTTCAAAATGGATAAAAAGGG 58.850 33.333 0.00 0.00 32.87 3.95
7039 10310 8.028938 CCGAAAATACTTGTCTTCAAAATGGAT 58.971 33.333 0.00 0.00 32.87 3.41
7040 10311 7.229707 TCCGAAAATACTTGTCTTCAAAATGGA 59.770 33.333 0.00 0.00 32.87 3.41
7041 10312 7.326063 GTCCGAAAATACTTGTCTTCAAAATGG 59.674 37.037 0.00 0.00 32.87 3.16
7042 10313 7.059488 CGTCCGAAAATACTTGTCTTCAAAATG 59.941 37.037 0.00 0.00 32.87 2.32
7043 10314 7.075741 CGTCCGAAAATACTTGTCTTCAAAAT 58.924 34.615 0.00 0.00 32.87 1.82
7044 10315 6.423862 CGTCCGAAAATACTTGTCTTCAAAA 58.576 36.000 0.00 0.00 32.87 2.44
7045 10316 5.049954 CCGTCCGAAAATACTTGTCTTCAAA 60.050 40.000 0.00 0.00 32.87 2.69
7046 10317 4.449743 CCGTCCGAAAATACTTGTCTTCAA 59.550 41.667 0.00 0.00 0.00 2.69
7047 10318 3.991773 CCGTCCGAAAATACTTGTCTTCA 59.008 43.478 0.00 0.00 0.00 3.02
7048 10319 4.240096 TCCGTCCGAAAATACTTGTCTTC 58.760 43.478 0.00 0.00 0.00 2.87
7049 10320 4.243270 CTCCGTCCGAAAATACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
7050 10321 3.368116 CCTCCGTCCGAAAATACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
7051 10322 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
7052 10323 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
7053 10324 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
7054 10325 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
7055 10326 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
7056 10327 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
7057 10328 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
7058 10329 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
7059 10330 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
7060 10331 0.967380 GGTACTCCCTCCGTCCGAAA 60.967 60.000 0.00 0.00 0.00 3.46
7061 10332 1.379044 GGTACTCCCTCCGTCCGAA 60.379 63.158 0.00 0.00 0.00 4.30
7062 10333 1.929860 ATGGTACTCCCTCCGTCCGA 61.930 60.000 0.00 0.00 0.00 4.55
7063 10334 0.179009 TATGGTACTCCCTCCGTCCG 60.179 60.000 0.00 0.00 0.00 4.79
7064 10335 2.305858 ATATGGTACTCCCTCCGTCC 57.694 55.000 0.00 0.00 0.00 4.79
7065 10336 4.405548 ACTTATATGGTACTCCCTCCGTC 58.594 47.826 0.00 0.00 0.00 4.79
7066 10337 4.466255 ACTTATATGGTACTCCCTCCGT 57.534 45.455 0.00 0.00 0.00 4.69
7067 10338 5.568392 ACTACTTATATGGTACTCCCTCCG 58.432 45.833 0.00 0.00 0.00 4.63
7068 10339 6.295180 GCAACTACTTATATGGTACTCCCTCC 60.295 46.154 0.00 0.00 0.00 4.30
7069 10340 6.494146 AGCAACTACTTATATGGTACTCCCTC 59.506 42.308 0.00 0.00 0.00 4.30
7070 10341 6.382925 AGCAACTACTTATATGGTACTCCCT 58.617 40.000 0.00 0.00 0.00 4.20
7071 10342 6.667558 AGCAACTACTTATATGGTACTCCC 57.332 41.667 0.00 0.00 0.00 4.30
7072 10343 9.640963 CATAAGCAACTACTTATATGGTACTCC 57.359 37.037 0.00 0.00 40.14 3.85
7301 10572 7.178983 TGGGAACAAATAATCAGCTCAAAGATT 59.821 33.333 2.91 2.91 37.44 2.40
7438 10709 4.870123 TTTGCTGCAACTCACCAATAAT 57.130 36.364 15.72 0.00 0.00 1.28
7488 10759 5.702065 TGGTAATAACTGGATTACTGCCA 57.298 39.130 11.90 0.00 40.62 4.92
7520 10791 7.472334 AGAATTGTTGCAATGGATTTCTAGT 57.528 32.000 0.59 0.00 0.00 2.57
7560 10831 8.591072 AGGTTTGCATCTGTTAGTACTTACTTA 58.409 33.333 12.83 2.13 37.73 2.24
7562 10833 7.005709 AGGTTTGCATCTGTTAGTACTTACT 57.994 36.000 12.83 0.00 40.24 2.24
7564 10835 8.564574 CAAAAGGTTTGCATCTGTTAGTACTTA 58.435 33.333 0.00 0.00 0.00 2.24
7595 10866 6.839454 AGAGTCTGATAATCAGCAATCCAAT 58.161 36.000 0.00 0.00 43.95 3.16
7686 10957 5.808366 ACTTGTCTGTACAGGAGAAATGA 57.192 39.130 22.48 0.00 36.27 2.57
8015 11289 4.982295 GGTGAAAATGCAAACAGAGTAACC 59.018 41.667 0.00 0.00 0.00 2.85
8040 11314 5.937111 AGATACACAGGTTTTACACAGGTT 58.063 37.500 0.00 0.00 0.00 3.50
8068 11342 4.846779 TCTGTTTACCACAATTTCTGCC 57.153 40.909 0.00 0.00 33.87 4.85
8133 11407 2.806244 GGTGCACGAATAGTTTCACAGT 59.194 45.455 11.45 0.00 36.22 3.55
8149 11423 3.834489 AACAAATCAACAATGGGTGCA 57.166 38.095 0.00 0.00 0.00 4.57
8153 11427 3.184178 GCGACAAACAAATCAACAATGGG 59.816 43.478 0.00 0.00 0.00 4.00
8154 11428 4.050553 AGCGACAAACAAATCAACAATGG 58.949 39.130 0.00 0.00 0.00 3.16
8286 11563 3.393089 AACAGTTTGAGATGTCGAGCT 57.607 42.857 0.00 0.00 0.00 4.09
8344 11621 3.664947 GTGCGGGTTGTAACAATTTAACG 59.335 43.478 0.00 0.00 0.00 3.18
8513 11790 4.142513 GGAGAGCTTTTTGAATAGCCACTG 60.143 45.833 0.00 0.00 38.14 3.66
8539 11816 2.503765 TCTGCGATATGGGAAAAGACCA 59.496 45.455 0.00 0.00 43.22 4.02
8627 11904 2.354199 GAGCTCTTAAACTGATGGCTGC 59.646 50.000 6.43 0.00 0.00 5.25
8813 12090 3.838271 GATCCCGACGAGGCAGCA 61.838 66.667 0.00 0.00 39.21 4.41
8828 12105 1.035923 AGACACTCCGCATCGATGAT 58.964 50.000 29.20 5.23 0.00 2.45
8843 12120 0.182537 CACTGTGGGTTCCCAAGACA 59.817 55.000 12.54 5.88 37.91 3.41
8896 12173 1.274416 TGGGGAAGCATTCTAGGGACT 60.274 52.381 0.00 0.00 46.56 3.85
8903 12180 2.122768 CCTACTCTGGGGAAGCATTCT 58.877 52.381 0.00 0.00 46.56 2.40
8978 12255 0.183492 CACCATGGATCGGGACCAAT 59.817 55.000 21.47 0.00 40.93 3.16
9197 12474 0.105862 CATGGAGCATGGGGTGGAAT 60.106 55.000 0.00 0.00 38.11 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.