Multiple sequence alignment - TraesCS3B01G209600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G209600 chr3B 100.000 3994 0 0 1 3994 245950257 245946264 0.000000e+00 7376
1 TraesCS3B01G209600 chr3D 93.880 2108 103 13 1885 3985 170553858 170551770 0.000000e+00 3155
2 TraesCS3B01G209600 chr3D 89.669 1026 70 11 757 1779 170554850 170553858 0.000000e+00 1275
3 TraesCS3B01G209600 chr3D 85.714 364 18 13 268 627 170555308 170554975 1.770000e-93 353
4 TraesCS3B01G209600 chr3D 95.192 104 3 1 670 773 170554968 170554867 3.190000e-36 163
5 TraesCS3B01G209600 chr3A 93.625 1804 91 12 1767 3567 208082172 208080390 0.000000e+00 2673
6 TraesCS3B01G209600 chr3A 89.906 1278 80 18 670 1939 208083323 208082087 0.000000e+00 1600
7 TraesCS3B01G209600 chr3A 94.769 325 16 1 3662 3986 208077994 208077671 4.610000e-139 505
8 TraesCS3B01G209600 chr3A 82.388 335 13 10 146 449 208083840 208083521 2.380000e-62 250
9 TraesCS3B01G209600 chr3A 89.441 161 14 2 3494 3654 251035913 251035756 2.430000e-47 200
10 TraesCS3B01G209600 chr3A 82.902 193 15 6 435 627 208083504 208083330 1.490000e-34 158
11 TraesCS3B01G209600 chr3A 93.023 86 5 1 1854 1939 208082258 208082174 1.510000e-24 124
12 TraesCS3B01G209600 chr3A 91.860 86 7 0 1767 1852 208082085 208082000 1.950000e-23 121
13 TraesCS3B01G209600 chr4D 96.644 149 3 2 1 148 233147240 233147387 3.080000e-61 246
14 TraesCS3B01G209600 chr4D 89.441 161 13 3 3490 3649 74079348 74079505 2.430000e-47 200
15 TraesCS3B01G209600 chr5B 94.667 150 6 2 1 148 115369794 115369943 8.630000e-57 231
16 TraesCS3B01G209600 chr4B 90.244 164 12 3 3493 3656 146469216 146469375 1.120000e-50 211
17 TraesCS3B01G209600 chr5D 90.062 161 12 3 3492 3651 175299903 175300060 5.230000e-49 206
18 TraesCS3B01G209600 chr7D 90.446 157 12 2 3493 3649 34373318 34373471 1.880000e-48 204
19 TraesCS3B01G209600 chr2B 89.571 163 11 5 3486 3648 288939766 288939922 6.770000e-48 202
20 TraesCS3B01G209600 chr1D 89.571 163 12 4 3492 3654 104291687 104291530 6.770000e-48 202
21 TraesCS3B01G209600 chr2D 88.957 163 14 3 3492 3654 221650890 221650732 8.760000e-47 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G209600 chr3B 245946264 245950257 3993 True 7376.000000 7376 100.000000 1 3994 1 chr3B.!!$R1 3993
1 TraesCS3B01G209600 chr3D 170551770 170555308 3538 True 1236.500000 3155 91.113750 268 3985 4 chr3D.!!$R1 3717
2 TraesCS3B01G209600 chr3A 208077671 208083840 6169 True 775.857143 2673 89.781857 146 3986 7 chr3A.!!$R2 3840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.037046 CAAGGGCCAACCAAGCAATC 60.037 55.0 6.18 0.00 43.89 2.67 F
80 81 0.038343 CCAACCAAGCAATCCCGTTG 60.038 55.0 0.00 0.00 40.90 4.10 F
81 82 0.038343 CAACCAAGCAATCCCGTTGG 60.038 55.0 0.00 0.00 45.39 3.77 F
724 787 0.040781 AACGAAACAATTGCCGTCGG 60.041 50.0 22.34 6.99 36.06 4.79 F
1532 1636 0.111061 TGGATGACAGCAAGGCAGTT 59.889 50.0 0.00 0.00 39.86 3.16 F
2585 2783 0.392998 CCACAGGTAGCCACACCATC 60.393 60.0 2.88 0.00 41.40 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1502 1606 0.037326 TGTCATCCAGCAGAACGGAC 60.037 55.0 0.00 0.0 33.05 4.79 R
1646 1750 0.181114 TGGCAGCTAGGGCAATAGTG 59.819 55.0 0.00 0.0 40.73 2.74 R
1757 1861 2.024176 TCCCCTCACTACAGAAGCAA 57.976 50.0 0.00 0.0 0.00 3.91 R
2558 2756 0.323360 GGCTACCTGTGGGAATGCAA 60.323 55.0 0.00 0.0 36.25 4.08 R
2729 2927 0.615850 GAGGGCTGGCAAAGTCTAGT 59.384 55.0 2.88 0.0 0.00 2.57 R
3910 6408 0.111639 GCCTACTTTGTTGTGGGGGA 59.888 55.0 0.00 0.0 38.75 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.083080 CGGTTAAAATTTCTCTTGTTTTTGTCT 57.917 29.630 0.00 0.00 0.00 3.41
29 30 9.849166 TTAAAATTTCTCTTGTTTTTGTCTCGT 57.151 25.926 0.00 0.00 0.00 4.18
30 31 7.740519 AAATTTCTCTTGTTTTTGTCTCGTG 57.259 32.000 0.00 0.00 0.00 4.35
31 32 3.944422 TCTCTTGTTTTTGTCTCGTGC 57.056 42.857 0.00 0.00 0.00 5.34
32 33 2.284150 TCTCTTGTTTTTGTCTCGTGCG 59.716 45.455 0.00 0.00 0.00 5.34
33 34 1.112459 CTTGTTTTTGTCTCGTGCGC 58.888 50.000 0.00 0.00 0.00 6.09
34 35 0.587737 TTGTTTTTGTCTCGTGCGCG 60.588 50.000 14.79 14.79 39.92 6.86
35 36 1.721133 GTTTTTGTCTCGTGCGCGG 60.721 57.895 21.04 10.77 38.89 6.46
36 37 2.174969 TTTTTGTCTCGTGCGCGGT 61.175 52.632 21.04 0.00 38.89 5.68
37 38 2.096481 TTTTTGTCTCGTGCGCGGTC 62.096 55.000 21.04 10.84 38.89 4.79
38 39 3.776659 TTTGTCTCGTGCGCGGTCA 62.777 57.895 21.04 13.30 38.89 4.02
39 40 3.776659 TTGTCTCGTGCGCGGTCAA 62.777 57.895 21.04 18.03 38.89 3.18
40 41 2.809601 GTCTCGTGCGCGGTCAAT 60.810 61.111 21.04 0.00 38.89 2.57
41 42 2.048597 TCTCGTGCGCGGTCAATT 60.049 55.556 21.04 0.00 38.89 2.32
42 43 1.666553 TCTCGTGCGCGGTCAATTT 60.667 52.632 21.04 0.00 38.89 1.82
43 44 1.509787 CTCGTGCGCGGTCAATTTG 60.510 57.895 21.04 0.00 38.89 2.32
44 45 2.501650 CGTGCGCGGTCAATTTGG 60.502 61.111 12.87 0.00 0.00 3.28
45 46 2.642700 GTGCGCGGTCAATTTGGT 59.357 55.556 8.83 0.00 0.00 3.67
46 47 1.007849 GTGCGCGGTCAATTTGGTT 60.008 52.632 8.83 0.00 0.00 3.67
47 48 1.007964 TGCGCGGTCAATTTGGTTG 60.008 52.632 8.83 0.00 39.25 3.77
48 49 1.284408 GCGCGGTCAATTTGGTTGA 59.716 52.632 8.83 0.00 44.36 3.18
58 59 5.226194 TCAATTTGGTTGAAATCCCCAAG 57.774 39.130 0.00 0.00 43.64 3.61
59 60 4.041444 TCAATTTGGTTGAAATCCCCAAGG 59.959 41.667 0.00 0.00 43.64 3.61
60 61 2.022718 TTGGTTGAAATCCCCAAGGG 57.977 50.000 0.00 0.00 46.11 3.95
61 62 0.544120 TGGTTGAAATCCCCAAGGGC 60.544 55.000 0.00 0.00 43.94 5.19
62 63 1.264749 GGTTGAAATCCCCAAGGGCC 61.265 60.000 0.00 0.00 43.94 5.80
63 64 0.544120 GTTGAAATCCCCAAGGGCCA 60.544 55.000 6.18 0.00 43.94 5.36
64 65 0.192064 TTGAAATCCCCAAGGGCCAA 59.808 50.000 6.18 0.00 43.94 4.52
65 66 0.544120 TGAAATCCCCAAGGGCCAAC 60.544 55.000 6.18 0.00 43.94 3.77
66 67 1.229496 AAATCCCCAAGGGCCAACC 60.229 57.895 6.18 0.00 43.94 3.77
67 68 2.042279 AAATCCCCAAGGGCCAACCA 62.042 55.000 6.18 0.00 43.94 3.67
68 69 2.042279 AATCCCCAAGGGCCAACCAA 62.042 55.000 6.18 0.00 43.94 3.67
69 70 2.460476 ATCCCCAAGGGCCAACCAAG 62.460 60.000 6.18 0.00 43.94 3.61
70 71 3.313524 CCCAAGGGCCAACCAAGC 61.314 66.667 6.18 0.00 43.89 4.01
71 72 2.523902 CCAAGGGCCAACCAAGCA 60.524 61.111 6.18 0.00 43.89 3.91
72 73 2.139484 CCAAGGGCCAACCAAGCAA 61.139 57.895 6.18 0.00 43.89 3.91
73 74 1.482748 CCAAGGGCCAACCAAGCAAT 61.483 55.000 6.18 0.00 43.89 3.56
74 75 0.037046 CAAGGGCCAACCAAGCAATC 60.037 55.000 6.18 0.00 43.89 2.67
75 76 1.194121 AAGGGCCAACCAAGCAATCC 61.194 55.000 6.18 0.00 43.89 3.01
76 77 2.659063 GGGCCAACCAAGCAATCCC 61.659 63.158 4.39 0.00 39.85 3.85
77 78 2.573340 GCCAACCAAGCAATCCCG 59.427 61.111 0.00 0.00 0.00 5.14
78 79 2.275380 GCCAACCAAGCAATCCCGT 61.275 57.895 0.00 0.00 0.00 5.28
79 80 1.815817 GCCAACCAAGCAATCCCGTT 61.816 55.000 0.00 0.00 0.00 4.44
80 81 0.038343 CCAACCAAGCAATCCCGTTG 60.038 55.000 0.00 0.00 40.90 4.10
81 82 0.038343 CAACCAAGCAATCCCGTTGG 60.038 55.000 0.00 0.00 45.39 3.77
82 83 1.184970 AACCAAGCAATCCCGTTGGG 61.185 55.000 5.39 0.00 44.37 4.12
92 93 2.429930 CCGTTGGGAGGCTTGTGA 59.570 61.111 0.00 0.00 34.06 3.58
93 94 1.672356 CCGTTGGGAGGCTTGTGAG 60.672 63.158 0.00 0.00 34.06 3.51
94 95 1.371183 CGTTGGGAGGCTTGTGAGA 59.629 57.895 0.00 0.00 0.00 3.27
95 96 0.671781 CGTTGGGAGGCTTGTGAGAG 60.672 60.000 0.00 0.00 0.00 3.20
96 97 0.687354 GTTGGGAGGCTTGTGAGAGA 59.313 55.000 0.00 0.00 0.00 3.10
97 98 1.280421 GTTGGGAGGCTTGTGAGAGAT 59.720 52.381 0.00 0.00 0.00 2.75
98 99 0.907486 TGGGAGGCTTGTGAGAGATG 59.093 55.000 0.00 0.00 0.00 2.90
99 100 1.198713 GGGAGGCTTGTGAGAGATGA 58.801 55.000 0.00 0.00 0.00 2.92
100 101 1.138661 GGGAGGCTTGTGAGAGATGAG 59.861 57.143 0.00 0.00 0.00 2.90
101 102 1.473080 GGAGGCTTGTGAGAGATGAGC 60.473 57.143 0.00 0.00 0.00 4.26
102 103 1.481772 GAGGCTTGTGAGAGATGAGCT 59.518 52.381 0.00 0.00 33.96 4.09
103 104 1.481772 AGGCTTGTGAGAGATGAGCTC 59.518 52.381 6.82 6.82 44.29 4.09
110 111 4.941609 GAGATGAGCTCGGCCAAA 57.058 55.556 9.64 0.00 33.17 3.28
111 112 3.159298 GAGATGAGCTCGGCCAAAA 57.841 52.632 9.64 0.00 33.17 2.44
112 113 1.453155 GAGATGAGCTCGGCCAAAAA 58.547 50.000 9.64 0.00 33.17 1.94
136 137 8.798859 AAAGTATCTTTGCAAGAGTGATATGT 57.201 30.769 0.00 0.00 41.61 2.29
137 138 8.798859 AAGTATCTTTGCAAGAGTGATATGTT 57.201 30.769 0.00 3.45 41.61 2.71
138 139 8.206325 AGTATCTTTGCAAGAGTGATATGTTG 57.794 34.615 0.00 0.00 41.61 3.33
139 140 5.885230 TCTTTGCAAGAGTGATATGTTGG 57.115 39.130 0.00 0.00 32.71 3.77
140 141 4.156556 TCTTTGCAAGAGTGATATGTTGGC 59.843 41.667 0.00 0.00 32.71 4.52
141 142 2.368439 TGCAAGAGTGATATGTTGGCC 58.632 47.619 0.00 0.00 0.00 5.36
142 143 1.678101 GCAAGAGTGATATGTTGGCCC 59.322 52.381 0.00 0.00 0.00 5.80
143 144 2.945440 GCAAGAGTGATATGTTGGCCCA 60.945 50.000 0.00 0.00 0.00 5.36
144 145 3.559069 CAAGAGTGATATGTTGGCCCAT 58.441 45.455 0.00 0.00 0.00 4.00
153 154 0.902516 TGTTGGCCCATTACCCTTGC 60.903 55.000 0.00 0.00 0.00 4.01
159 160 1.067060 GCCCATTACCCTTGCGAATTC 59.933 52.381 0.00 0.00 0.00 2.17
163 164 3.438360 CATTACCCTTGCGAATTCTTGC 58.562 45.455 3.52 0.99 0.00 4.01
207 208 4.704833 GTCGGAAGCAGGCAGGCA 62.705 66.667 0.00 0.00 35.83 4.75
219 233 3.788672 GCAGGCAGCCAGTATAACT 57.211 52.632 15.80 0.00 37.23 2.24
245 259 3.505184 CGGCGCGCCCTTTAATGT 61.505 61.111 42.07 0.00 0.00 2.71
272 304 1.271163 CGGCTTGTTTCTTCTACCCCA 60.271 52.381 0.00 0.00 0.00 4.96
274 306 2.160205 GCTTGTTTCTTCTACCCCACC 58.840 52.381 0.00 0.00 0.00 4.61
287 319 1.141019 CCCACCCATGTCGTCGTAG 59.859 63.158 0.00 0.00 0.00 3.51
290 322 0.179111 CACCCATGTCGTCGTAGCAT 60.179 55.000 0.00 0.00 0.00 3.79
292 324 0.934901 CCCATGTCGTCGTAGCATCG 60.935 60.000 0.00 0.00 0.00 3.84
304 336 4.456358 GCATCGCGTCAATGCAAA 57.544 50.000 22.05 0.00 46.93 3.68
314 346 0.899717 TCAATGCAAAGTCCAGGCCC 60.900 55.000 0.00 0.00 0.00 5.80
315 347 1.978617 AATGCAAAGTCCAGGCCCG 60.979 57.895 0.00 0.00 0.00 6.13
384 416 7.201427 GCACGCACATGATAACATTAACAATTT 60.201 33.333 0.00 0.00 34.15 1.82
385 417 9.283420 CACGCACATGATAACATTAACAATTTA 57.717 29.630 0.00 0.00 34.15 1.40
386 418 9.284594 ACGCACATGATAACATTAACAATTTAC 57.715 29.630 0.00 0.00 34.15 2.01
387 419 9.502145 CGCACATGATAACATTAACAATTTACT 57.498 29.630 0.00 0.00 34.15 2.24
475 538 1.880027 CTTTTCCTTCCACTTGTCCCG 59.120 52.381 0.00 0.00 0.00 5.14
486 549 2.910479 TGTCCCGTCGACAGTGCT 60.910 61.111 17.16 0.00 46.80 4.40
487 550 2.430921 GTCCCGTCGACAGTGCTG 60.431 66.667 17.16 0.00 41.54 4.41
502 565 1.134907 GTGCTGCAAGGATCATTTGGG 60.135 52.381 2.77 0.00 35.94 4.12
503 566 0.179092 GCTGCAAGGATCATTTGGGC 60.179 55.000 10.18 3.28 0.00 5.36
505 568 1.829222 CTGCAAGGATCATTTGGGCTT 59.171 47.619 10.18 0.00 0.00 4.35
506 569 2.235402 CTGCAAGGATCATTTGGGCTTT 59.765 45.455 10.18 0.00 0.00 3.51
507 570 2.027929 TGCAAGGATCATTTGGGCTTTG 60.028 45.455 10.18 0.00 0.00 2.77
508 571 2.678769 GCAAGGATCATTTGGGCTTTGG 60.679 50.000 10.18 0.00 0.00 3.28
534 597 1.949525 GTGCAGCCGATACCATCATTT 59.050 47.619 0.00 0.00 0.00 2.32
539 602 2.358898 AGCCGATACCATCATTTTGCAC 59.641 45.455 0.00 0.00 0.00 4.57
541 604 3.181487 GCCGATACCATCATTTTGCACTT 60.181 43.478 0.00 0.00 0.00 3.16
544 607 6.072728 GCCGATACCATCATTTTGCACTTATA 60.073 38.462 0.00 0.00 0.00 0.98
545 608 7.362056 GCCGATACCATCATTTTGCACTTATAT 60.362 37.037 0.00 0.00 0.00 0.86
556 619 8.971321 CATTTTGCACTTATATTATCAACTGGC 58.029 33.333 0.00 0.00 0.00 4.85
570 633 4.757594 TCAACTGGCATGATTAAATTGGC 58.242 39.130 0.00 3.26 36.55 4.52
571 634 4.467082 TCAACTGGCATGATTAAATTGGCT 59.533 37.500 0.00 0.00 36.91 4.75
572 635 5.655974 TCAACTGGCATGATTAAATTGGCTA 59.344 36.000 0.00 0.00 36.91 3.93
573 636 5.779529 ACTGGCATGATTAAATTGGCTAG 57.220 39.130 0.00 0.00 36.91 3.42
627 690 3.586470 TCCCAACTAAGCAAAACCTCA 57.414 42.857 0.00 0.00 0.00 3.86
628 691 3.219281 TCCCAACTAAGCAAAACCTCAC 58.781 45.455 0.00 0.00 0.00 3.51
629 692 2.296190 CCCAACTAAGCAAAACCTCACC 59.704 50.000 0.00 0.00 0.00 4.02
630 693 2.296190 CCAACTAAGCAAAACCTCACCC 59.704 50.000 0.00 0.00 0.00 4.61
631 694 3.222603 CAACTAAGCAAAACCTCACCCT 58.777 45.455 0.00 0.00 0.00 4.34
632 695 3.595190 ACTAAGCAAAACCTCACCCTT 57.405 42.857 0.00 0.00 0.00 3.95
633 696 4.717279 ACTAAGCAAAACCTCACCCTTA 57.283 40.909 0.00 0.00 0.00 2.69
634 697 5.056553 ACTAAGCAAAACCTCACCCTTAA 57.943 39.130 0.00 0.00 0.00 1.85
635 698 5.451354 ACTAAGCAAAACCTCACCCTTAAA 58.549 37.500 0.00 0.00 0.00 1.52
636 699 4.937201 AAGCAAAACCTCACCCTTAAAG 57.063 40.909 0.00 0.00 0.00 1.85
637 700 4.178956 AGCAAAACCTCACCCTTAAAGA 57.821 40.909 0.00 0.00 0.00 2.52
638 701 4.145052 AGCAAAACCTCACCCTTAAAGAG 58.855 43.478 0.00 0.00 0.00 2.85
639 702 4.141251 AGCAAAACCTCACCCTTAAAGAGA 60.141 41.667 0.00 0.00 0.00 3.10
640 703 4.216472 GCAAAACCTCACCCTTAAAGAGAG 59.784 45.833 0.00 0.00 0.00 3.20
641 704 5.377478 CAAAACCTCACCCTTAAAGAGAGT 58.623 41.667 0.00 0.00 0.00 3.24
642 705 6.531021 CAAAACCTCACCCTTAAAGAGAGTA 58.469 40.000 0.00 0.00 0.00 2.59
643 706 5.741962 AACCTCACCCTTAAAGAGAGTAC 57.258 43.478 0.00 0.00 0.00 2.73
644 707 4.748701 ACCTCACCCTTAAAGAGAGTACA 58.251 43.478 0.00 0.00 0.00 2.90
645 708 4.527427 ACCTCACCCTTAAAGAGAGTACAC 59.473 45.833 0.00 0.00 0.00 2.90
646 709 4.773149 CCTCACCCTTAAAGAGAGTACACT 59.227 45.833 0.00 0.00 0.00 3.55
647 710 5.950549 CCTCACCCTTAAAGAGAGTACACTA 59.049 44.000 0.00 0.00 0.00 2.74
648 711 6.436532 CCTCACCCTTAAAGAGAGTACACTAA 59.563 42.308 0.00 0.00 0.00 2.24
649 712 7.224522 TCACCCTTAAAGAGAGTACACTAAC 57.775 40.000 0.00 0.00 0.00 2.34
650 713 6.779049 TCACCCTTAAAGAGAGTACACTAACA 59.221 38.462 0.00 0.00 0.00 2.41
651 714 7.039923 TCACCCTTAAAGAGAGTACACTAACAG 60.040 40.741 0.00 0.00 0.00 3.16
652 715 6.210984 ACCCTTAAAGAGAGTACACTAACAGG 59.789 42.308 0.00 0.00 0.00 4.00
653 716 6.351117 CCCTTAAAGAGAGTACACTAACAGGG 60.351 46.154 0.00 2.32 0.00 4.45
654 717 4.538746 AAAGAGAGTACACTAACAGGGC 57.461 45.455 0.00 0.00 0.00 5.19
655 718 3.459710 AGAGAGTACACTAACAGGGCT 57.540 47.619 0.00 0.00 0.00 5.19
656 719 3.780626 AGAGAGTACACTAACAGGGCTT 58.219 45.455 0.00 0.00 0.00 4.35
657 720 4.161102 AGAGAGTACACTAACAGGGCTTT 58.839 43.478 0.00 0.00 0.00 3.51
658 721 5.331069 AGAGAGTACACTAACAGGGCTTTA 58.669 41.667 0.00 0.00 0.00 1.85
659 722 5.185442 AGAGAGTACACTAACAGGGCTTTAC 59.815 44.000 0.00 0.00 0.00 2.01
660 723 4.836736 AGAGTACACTAACAGGGCTTTACA 59.163 41.667 0.00 0.00 0.00 2.41
661 724 5.306160 AGAGTACACTAACAGGGCTTTACAA 59.694 40.000 0.00 0.00 0.00 2.41
662 725 5.303165 AGTACACTAACAGGGCTTTACAAC 58.697 41.667 0.00 0.00 0.00 3.32
663 726 4.159244 ACACTAACAGGGCTTTACAACA 57.841 40.909 0.00 0.00 0.00 3.33
664 727 3.881089 ACACTAACAGGGCTTTACAACAC 59.119 43.478 0.00 0.00 0.00 3.32
665 728 3.252458 CACTAACAGGGCTTTACAACACC 59.748 47.826 0.00 0.00 0.00 4.16
666 729 2.445682 AACAGGGCTTTACAACACCA 57.554 45.000 0.00 0.00 0.00 4.17
667 730 2.675658 ACAGGGCTTTACAACACCAT 57.324 45.000 0.00 0.00 0.00 3.55
668 731 2.957474 ACAGGGCTTTACAACACCATT 58.043 42.857 0.00 0.00 0.00 3.16
700 763 6.436847 CCCATGCACAAACCATATCCATATAA 59.563 38.462 0.00 0.00 0.00 0.98
724 787 0.040781 AACGAAACAATTGCCGTCGG 60.041 50.000 22.34 6.99 36.06 4.79
877 973 4.422073 TCCTAATCTTACCACATGCAGG 57.578 45.455 0.00 0.00 0.00 4.85
878 974 3.780294 TCCTAATCTTACCACATGCAGGT 59.220 43.478 14.17 14.17 43.14 4.00
926 1022 4.671766 GCGGTCCAACTTGAATCACATTAC 60.672 45.833 0.00 0.00 0.00 1.89
937 1033 7.914346 ACTTGAATCACATTACTACGTACTAGC 59.086 37.037 0.00 0.00 0.00 3.42
938 1034 7.563888 TGAATCACATTACTACGTACTAGCT 57.436 36.000 0.00 0.00 0.00 3.32
939 1035 8.667076 TGAATCACATTACTACGTACTAGCTA 57.333 34.615 0.00 0.00 0.00 3.32
940 1036 8.771766 TGAATCACATTACTACGTACTAGCTAG 58.228 37.037 19.44 19.44 0.00 3.42
981 1077 3.066621 GTGTGCAAGAACCAAATCACAGA 59.933 43.478 0.00 0.00 35.46 3.41
999 1095 3.179830 CAGAAGCATTGCATCAAAGCTC 58.820 45.455 15.51 4.65 45.56 4.09
1060 1161 5.538118 TCGTTGCATCTTTCTACTTCTCAA 58.462 37.500 0.00 0.00 0.00 3.02
1111 1212 1.222936 GGTGAGAGTGCCCATCCAG 59.777 63.158 0.00 0.00 0.00 3.86
1115 1216 0.615331 GAGAGTGCCCATCCAGTTGA 59.385 55.000 0.00 0.00 0.00 3.18
1116 1217 0.617413 AGAGTGCCCATCCAGTTGAG 59.383 55.000 0.00 0.00 0.00 3.02
1120 1221 2.401766 GCCCATCCAGTTGAGCACG 61.402 63.158 0.00 0.00 0.00 5.34
1155 1256 5.280011 GGGTCTTTCTCCACATTTCTACAGA 60.280 44.000 0.00 0.00 0.00 3.41
1185 1286 2.453650 CGCAAGCTGATGAGATTGTG 57.546 50.000 11.78 10.53 46.40 3.33
1275 1376 2.030540 CCATGACTGCTTTGTTCAGGTG 60.031 50.000 0.00 0.00 35.94 4.00
1276 1377 2.708216 TGACTGCTTTGTTCAGGTGA 57.292 45.000 0.00 0.00 35.94 4.02
1277 1378 3.213206 TGACTGCTTTGTTCAGGTGAT 57.787 42.857 0.00 0.00 35.94 3.06
1278 1379 3.554934 TGACTGCTTTGTTCAGGTGATT 58.445 40.909 0.00 0.00 35.94 2.57
1279 1380 4.713553 TGACTGCTTTGTTCAGGTGATTA 58.286 39.130 0.00 0.00 35.94 1.75
1280 1381 5.316167 TGACTGCTTTGTTCAGGTGATTAT 58.684 37.500 0.00 0.00 35.94 1.28
1281 1382 5.769662 TGACTGCTTTGTTCAGGTGATTATT 59.230 36.000 0.00 0.00 35.94 1.40
1282 1383 6.939730 TGACTGCTTTGTTCAGGTGATTATTA 59.060 34.615 0.00 0.00 35.94 0.98
1283 1384 7.611467 TGACTGCTTTGTTCAGGTGATTATTAT 59.389 33.333 0.00 0.00 35.94 1.28
1284 1385 8.353423 ACTGCTTTGTTCAGGTGATTATTATT 57.647 30.769 0.00 0.00 35.94 1.40
1285 1386 9.461312 ACTGCTTTGTTCAGGTGATTATTATTA 57.539 29.630 0.00 0.00 35.94 0.98
1349 1450 6.685527 TGCACATCAACTAGTAAACAACAA 57.314 33.333 0.00 0.00 0.00 2.83
1364 1465 5.923733 AACAACAATCCTACAACCACAAA 57.076 34.783 0.00 0.00 0.00 2.83
1365 1466 5.923733 ACAACAATCCTACAACCACAAAA 57.076 34.783 0.00 0.00 0.00 2.44
1380 1481 7.279758 ACAACCACAAAATTCACCATAAGTTTG 59.720 33.333 7.67 7.67 45.25 2.93
1397 1498 9.421806 CATAAGTTTGAATTGTGCATTTCCTTA 57.578 29.630 0.00 0.00 0.00 2.69
1440 1544 6.599356 TTTCAGCTACTACAACCAGTCATA 57.401 37.500 0.00 0.00 0.00 2.15
1441 1545 6.599356 TTCAGCTACTACAACCAGTCATAA 57.401 37.500 0.00 0.00 0.00 1.90
1442 1546 5.962433 TCAGCTACTACAACCAGTCATAAC 58.038 41.667 0.00 0.00 0.00 1.89
1493 1597 3.190535 ACATTTTCGTCGAATTTCAGGGG 59.809 43.478 8.78 0.00 0.00 4.79
1502 1606 1.656818 AATTTCAGGGGTGCGATGCG 61.657 55.000 0.00 0.00 0.00 4.73
1514 1618 2.792290 CGATGCGTCCGTTCTGCTG 61.792 63.158 0.00 0.00 0.00 4.41
1532 1636 0.111061 TGGATGACAGCAAGGCAGTT 59.889 50.000 0.00 0.00 39.86 3.16
1544 1648 1.208614 GGCAGTTGCAAGCGAGAAG 59.791 57.895 0.00 0.00 44.36 2.85
1565 1669 1.884235 ACGCTCTTCCCAACAAGAAG 58.116 50.000 0.00 0.00 41.76 2.85
1775 1879 2.503356 AGATTGCTTCTGTAGTGAGGGG 59.497 50.000 0.00 0.00 31.79 4.79
1778 1882 2.334977 TGCTTCTGTAGTGAGGGGAAA 58.665 47.619 0.00 0.00 0.00 3.13
1779 1883 2.912956 TGCTTCTGTAGTGAGGGGAAAT 59.087 45.455 0.00 0.00 0.00 2.17
1836 2026 6.628185 TCGTATTTAAGAGGAACAGAAGACC 58.372 40.000 0.00 0.00 0.00 3.85
1845 2035 5.070047 AGAGGAACAGAAGACCGAAAACTAA 59.930 40.000 0.00 0.00 0.00 2.24
1943 2133 4.810790 ACTGAAAACTACTGATGTCCTCG 58.189 43.478 0.00 0.00 0.00 4.63
2193 2388 6.655062 TCAATGTTCGAAGTACACATTTGAC 58.345 36.000 9.20 0.00 38.75 3.18
2263 2458 0.394938 ATGGCACGGTTGTACACTGA 59.605 50.000 0.00 0.00 35.45 3.41
2265 2460 1.554042 GGCACGGTTGTACACTGACG 61.554 60.000 0.00 0.34 35.45 4.35
2289 2484 6.147164 CGTCCTGTCATAAACTTAAGCTTGAA 59.853 38.462 9.86 0.00 0.00 2.69
2337 2532 6.676950 TGTAGTGGATAAACAAAAGTGCATG 58.323 36.000 0.00 0.00 0.00 4.06
2387 2582 7.361286 GGAAAGAGATGACTGGAACAACATAAC 60.361 40.741 0.00 0.00 38.70 1.89
2400 2595 9.357161 TGGAACAACATAACAGTAATAAAAGGT 57.643 29.630 0.00 0.00 31.92 3.50
2439 2637 8.638873 TCATATTACGTGTTCCAGTTAGATCAT 58.361 33.333 0.00 0.00 0.00 2.45
2444 2642 5.106038 ACGTGTTCCAGTTAGATCATCGTTA 60.106 40.000 0.00 0.00 0.00 3.18
2445 2643 5.977725 CGTGTTCCAGTTAGATCATCGTTAT 59.022 40.000 0.00 0.00 0.00 1.89
2464 2662 0.609131 TAGGCCTTGAAACCAGCAGC 60.609 55.000 12.58 0.00 0.00 5.25
2474 2672 0.604578 AACCAGCAGCGCAATTTCAT 59.395 45.000 11.47 0.00 0.00 2.57
2481 2679 5.693104 CCAGCAGCGCAATTTCATATTTAAT 59.307 36.000 11.47 0.00 0.00 1.40
2490 2688 9.393249 CGCAATTTCATATTTAATACCACGAAT 57.607 29.630 0.00 0.00 0.00 3.34
2503 2701 4.339872 ACCACGAATGTAGTTGTTACCA 57.660 40.909 0.00 0.00 0.00 3.25
2515 2713 2.551032 GTTGTTACCACTGGCCAAGTAC 59.449 50.000 7.01 3.21 36.83 2.73
2516 2714 2.051692 TGTTACCACTGGCCAAGTACT 58.948 47.619 7.01 0.00 36.83 2.73
2541 2739 6.044754 TGGGTCAGCATATTCTCCTATCAATT 59.955 38.462 0.00 0.00 0.00 2.32
2546 2744 8.650490 TCAGCATATTCTCCTATCAATTACACA 58.350 33.333 0.00 0.00 0.00 3.72
2567 2765 5.066505 CACATTCTACCTTACTTGCATTCCC 59.933 44.000 0.00 0.00 0.00 3.97
2585 2783 0.392998 CCACAGGTAGCCACACCATC 60.393 60.000 2.88 0.00 41.40 3.51
2634 2832 2.231215 ACGGCTCTACAATCAGCATC 57.769 50.000 0.00 0.00 37.38 3.91
2658 2856 4.843728 AGATAACAAACCGGACATGACAT 58.156 39.130 9.46 2.90 0.00 3.06
2691 2889 4.458989 GGTTCTATCACAAACTGGCATCAA 59.541 41.667 0.00 0.00 0.00 2.57
2705 2903 1.028330 CATCAATCTGCCCACGCACT 61.028 55.000 0.00 0.00 41.12 4.40
2729 2927 2.722094 GGTGATAACAACATCAGCCCA 58.278 47.619 4.37 0.00 44.13 5.36
2756 2954 0.541764 TTGCCAGCCCTCCGAAATTT 60.542 50.000 0.00 0.00 0.00 1.82
2831 3029 1.336755 CAGGTTTTGTGGACCGGAAAG 59.663 52.381 9.46 0.00 42.11 2.62
2998 3196 4.122776 GTCAATCATGTCCGCTAGTCAAT 58.877 43.478 0.00 0.00 0.00 2.57
3005 3203 3.766151 TGTCCGCTAGTCAATAAGTTCG 58.234 45.455 0.00 0.00 0.00 3.95
3014 3212 5.160607 AGTCAATAAGTTCGATGGGTTCA 57.839 39.130 0.00 0.00 0.00 3.18
3212 3410 5.593909 TGGAAGATGCAAAGAAGAAAACTCA 59.406 36.000 0.00 0.00 0.00 3.41
3238 3436 3.620374 AGCTGATTTCAGATGCAGTTACG 59.380 43.478 11.70 0.00 46.59 3.18
3317 3515 6.391227 AACCTACAAGACAAATTCCACAAG 57.609 37.500 0.00 0.00 0.00 3.16
3324 3522 6.828785 ACAAGACAAATTCCACAAGACTAAGT 59.171 34.615 0.00 0.00 0.00 2.24
3360 3558 6.434302 TGTCCCATATCTTCCATCATTTGTT 58.566 36.000 0.00 0.00 0.00 2.83
3560 3758 7.388500 TGTGAATCGGATGTATATAGACACGTA 59.612 37.037 1.52 0.00 30.52 3.57
3616 3814 7.655732 TGTATGTAGTCCACATTGAAATATCCG 59.344 37.037 0.00 0.00 46.01 4.18
3652 4292 2.040813 TGTGAACGGAGGGAGTAGTAGT 59.959 50.000 0.00 0.00 0.00 2.73
3657 4297 3.286353 ACGGAGGGAGTAGTAGTTAAGC 58.714 50.000 0.00 0.00 0.00 3.09
3658 4298 3.285484 CGGAGGGAGTAGTAGTTAAGCA 58.715 50.000 0.00 0.00 0.00 3.91
3669 6167 9.235537 GAGTAGTAGTTAAGCATAAACTAGCAC 57.764 37.037 5.98 7.03 39.46 4.40
3699 6197 7.574779 CGTCAATGATTTGGTCAGGAAATAACA 60.575 37.037 0.00 0.00 40.92 2.41
3700 6198 8.253113 GTCAATGATTTGGTCAGGAAATAACAT 58.747 33.333 0.00 0.00 40.92 2.71
3777 6275 0.035152 TCCCAGGCAGTGCATGTAAG 60.035 55.000 26.42 15.52 38.76 2.34
3816 6314 2.991190 CAGATGTGCCATGTTTTCAAGC 59.009 45.455 0.00 0.00 34.89 4.01
3895 6393 0.606401 AAACCTGATGCTCCACACGG 60.606 55.000 0.00 0.00 0.00 4.94
3910 6408 3.440173 CCACACGGCTTTTGTAGATGAAT 59.560 43.478 0.00 0.00 0.00 2.57
3965 6463 1.016627 TCTGCACACAAAGAGCACAC 58.983 50.000 0.00 0.00 38.96 3.82
3986 6484 5.121768 ACACAAGTCAGAACTGTAAACACAC 59.878 40.000 1.73 0.00 35.36 3.82
3987 6485 5.121611 CACAAGTCAGAACTGTAAACACACA 59.878 40.000 1.73 0.00 35.36 3.72
3988 6486 5.703592 ACAAGTCAGAACTGTAAACACACAA 59.296 36.000 1.73 0.00 35.36 3.33
3989 6487 6.374333 ACAAGTCAGAACTGTAAACACACAAT 59.626 34.615 1.73 0.00 35.36 2.71
3990 6488 6.363577 AGTCAGAACTGTAAACACACAATG 57.636 37.500 1.73 0.00 33.32 2.82
3991 6489 6.112734 AGTCAGAACTGTAAACACACAATGA 58.887 36.000 1.73 0.00 33.32 2.57
3992 6490 6.258727 AGTCAGAACTGTAAACACACAATGAG 59.741 38.462 1.73 0.00 33.32 2.90
3993 6491 5.527214 TCAGAACTGTAAACACACAATGAGG 59.473 40.000 1.73 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.083080 AGACAAAAACAAGAGAAATTTTAACCG 57.917 29.630 0.00 0.00 0.00 4.44
3 4 9.849166 ACGAGACAAAAACAAGAGAAATTTTAA 57.151 25.926 0.00 0.00 0.00 1.52
4 5 9.284594 CACGAGACAAAAACAAGAGAAATTTTA 57.715 29.630 0.00 0.00 0.00 1.52
5 6 7.201435 GCACGAGACAAAAACAAGAGAAATTTT 60.201 33.333 0.00 0.00 0.00 1.82
6 7 6.253512 GCACGAGACAAAAACAAGAGAAATTT 59.746 34.615 0.00 0.00 0.00 1.82
7 8 5.743872 GCACGAGACAAAAACAAGAGAAATT 59.256 36.000 0.00 0.00 0.00 1.82
8 9 5.273944 GCACGAGACAAAAACAAGAGAAAT 58.726 37.500 0.00 0.00 0.00 2.17
9 10 4.658071 GCACGAGACAAAAACAAGAGAAA 58.342 39.130 0.00 0.00 0.00 2.52
10 11 3.242284 CGCACGAGACAAAAACAAGAGAA 60.242 43.478 0.00 0.00 0.00 2.87
11 12 2.284150 CGCACGAGACAAAAACAAGAGA 59.716 45.455 0.00 0.00 0.00 3.10
12 13 2.629022 CGCACGAGACAAAAACAAGAG 58.371 47.619 0.00 0.00 0.00 2.85
13 14 1.267832 GCGCACGAGACAAAAACAAGA 60.268 47.619 0.30 0.00 0.00 3.02
14 15 1.112459 GCGCACGAGACAAAAACAAG 58.888 50.000 0.30 0.00 0.00 3.16
15 16 0.587737 CGCGCACGAGACAAAAACAA 60.588 50.000 8.75 0.00 43.93 2.83
16 17 1.011684 CGCGCACGAGACAAAAACA 60.012 52.632 8.75 0.00 43.93 2.83
17 18 1.721133 CCGCGCACGAGACAAAAAC 60.721 57.895 8.75 0.00 43.93 2.43
18 19 2.096481 GACCGCGCACGAGACAAAAA 62.096 55.000 8.75 0.00 43.93 1.94
19 20 2.586635 ACCGCGCACGAGACAAAA 60.587 55.556 8.75 0.00 43.93 2.44
20 21 3.033764 GACCGCGCACGAGACAAA 61.034 61.111 8.75 0.00 43.93 2.83
21 22 3.776659 TTGACCGCGCACGAGACAA 62.777 57.895 8.75 2.87 43.93 3.18
22 23 3.567478 ATTGACCGCGCACGAGACA 62.567 57.895 8.75 0.00 43.93 3.41
23 24 1.897398 AAATTGACCGCGCACGAGAC 61.897 55.000 8.75 0.00 43.93 3.36
24 25 1.666553 AAATTGACCGCGCACGAGA 60.667 52.632 8.75 0.00 43.93 4.04
25 26 1.509787 CAAATTGACCGCGCACGAG 60.510 57.895 8.75 0.00 43.93 4.18
26 27 2.553770 CAAATTGACCGCGCACGA 59.446 55.556 8.75 0.00 43.93 4.35
27 28 2.501650 CCAAATTGACCGCGCACG 60.502 61.111 8.75 0.00 39.67 5.34
28 29 1.007849 AACCAAATTGACCGCGCAC 60.008 52.632 8.75 0.00 0.00 5.34
29 30 1.007964 CAACCAAATTGACCGCGCA 60.008 52.632 8.75 0.00 41.23 6.09
30 31 1.284408 TCAACCAAATTGACCGCGC 59.716 52.632 0.00 0.00 42.62 6.86
34 35 8.918346 CCTTGGGGATTTCAACCAAATTGACC 62.918 46.154 0.00 0.00 43.12 4.02
35 36 6.030610 CCTTGGGGATTTCAACCAAATTGAC 61.031 44.000 0.00 0.00 43.12 3.18
36 37 4.041444 CCTTGGGGATTTCAACCAAATTGA 59.959 41.667 0.00 0.00 43.12 2.57
37 38 4.325972 CCTTGGGGATTTCAACCAAATTG 58.674 43.478 0.00 0.00 43.12 2.32
38 39 4.639078 CCTTGGGGATTTCAACCAAATT 57.361 40.909 0.00 0.00 43.12 1.82
53 54 3.313524 GCTTGGTTGGCCCTTGGG 61.314 66.667 0.00 0.32 0.00 4.12
54 55 1.482748 ATTGCTTGGTTGGCCCTTGG 61.483 55.000 0.00 0.00 0.00 3.61
55 56 0.037046 GATTGCTTGGTTGGCCCTTG 60.037 55.000 0.00 0.00 0.00 3.61
56 57 1.194121 GGATTGCTTGGTTGGCCCTT 61.194 55.000 0.00 0.00 0.00 3.95
57 58 1.610379 GGATTGCTTGGTTGGCCCT 60.610 57.895 0.00 0.00 0.00 5.19
58 59 2.659063 GGGATTGCTTGGTTGGCCC 61.659 63.158 0.00 0.00 0.00 5.80
59 60 2.981302 GGGATTGCTTGGTTGGCC 59.019 61.111 0.00 0.00 0.00 5.36
60 61 1.815817 AACGGGATTGCTTGGTTGGC 61.816 55.000 0.00 0.00 0.00 4.52
61 62 0.038343 CAACGGGATTGCTTGGTTGG 60.038 55.000 0.00 0.00 35.53 3.77
62 63 0.038343 CCAACGGGATTGCTTGGTTG 60.038 55.000 0.00 0.00 36.93 3.77
63 64 2.350738 CCAACGGGATTGCTTGGTT 58.649 52.632 0.00 0.00 36.93 3.67
64 65 4.095590 CCAACGGGATTGCTTGGT 57.904 55.556 0.00 0.00 36.93 3.67
74 75 2.672996 CACAAGCCTCCCAACGGG 60.673 66.667 0.00 0.00 46.11 5.28
75 76 1.672356 CTCACAAGCCTCCCAACGG 60.672 63.158 0.00 0.00 0.00 4.44
76 77 0.671781 CTCTCACAAGCCTCCCAACG 60.672 60.000 0.00 0.00 0.00 4.10
77 78 0.687354 TCTCTCACAAGCCTCCCAAC 59.313 55.000 0.00 0.00 0.00 3.77
78 79 1.280133 CATCTCTCACAAGCCTCCCAA 59.720 52.381 0.00 0.00 0.00 4.12
79 80 0.907486 CATCTCTCACAAGCCTCCCA 59.093 55.000 0.00 0.00 0.00 4.37
80 81 1.138661 CTCATCTCTCACAAGCCTCCC 59.861 57.143 0.00 0.00 0.00 4.30
81 82 1.473080 GCTCATCTCTCACAAGCCTCC 60.473 57.143 0.00 0.00 0.00 4.30
82 83 1.481772 AGCTCATCTCTCACAAGCCTC 59.518 52.381 0.00 0.00 33.43 4.70
83 84 1.481772 GAGCTCATCTCTCACAAGCCT 59.518 52.381 9.40 0.00 38.78 4.58
84 85 1.802136 CGAGCTCATCTCTCACAAGCC 60.802 57.143 15.40 0.00 39.70 4.35
85 86 1.558741 CGAGCTCATCTCTCACAAGC 58.441 55.000 15.40 0.00 39.70 4.01
86 87 1.802136 GCCGAGCTCATCTCTCACAAG 60.802 57.143 15.40 0.00 39.70 3.16
87 88 0.174389 GCCGAGCTCATCTCTCACAA 59.826 55.000 15.40 0.00 39.70 3.33
88 89 1.670949 GGCCGAGCTCATCTCTCACA 61.671 60.000 15.40 0.00 39.70 3.58
89 90 1.067250 GGCCGAGCTCATCTCTCAC 59.933 63.158 15.40 0.00 39.70 3.51
90 91 0.972471 TTGGCCGAGCTCATCTCTCA 60.972 55.000 15.40 0.00 39.70 3.27
91 92 0.176680 TTTGGCCGAGCTCATCTCTC 59.823 55.000 15.40 0.00 39.70 3.20
92 93 0.615331 TTTTGGCCGAGCTCATCTCT 59.385 50.000 15.40 0.00 39.70 3.10
93 94 1.453155 TTTTTGGCCGAGCTCATCTC 58.547 50.000 15.40 0.48 38.47 2.75
94 95 3.650647 TTTTTGGCCGAGCTCATCT 57.349 47.368 15.40 0.00 0.00 2.90
119 120 3.193267 GGCCAACATATCACTCTTGCAAA 59.807 43.478 0.00 0.00 0.00 3.68
120 121 2.754552 GGCCAACATATCACTCTTGCAA 59.245 45.455 0.00 0.00 0.00 4.08
121 122 2.368439 GGCCAACATATCACTCTTGCA 58.632 47.619 0.00 0.00 0.00 4.08
122 123 1.678101 GGGCCAACATATCACTCTTGC 59.322 52.381 4.39 0.00 0.00 4.01
123 124 3.003394 TGGGCCAACATATCACTCTTG 57.997 47.619 2.13 0.00 0.00 3.02
124 125 3.959495 ATGGGCCAACATATCACTCTT 57.041 42.857 11.89 0.00 0.00 2.85
125 126 3.959495 AATGGGCCAACATATCACTCT 57.041 42.857 11.89 0.00 0.00 3.24
126 127 3.821033 GGTAATGGGCCAACATATCACTC 59.179 47.826 11.89 0.00 0.00 3.51
127 128 3.436470 GGGTAATGGGCCAACATATCACT 60.436 47.826 11.89 0.00 0.00 3.41
128 129 2.890945 GGGTAATGGGCCAACATATCAC 59.109 50.000 11.89 0.54 0.00 3.06
129 130 2.788807 AGGGTAATGGGCCAACATATCA 59.211 45.455 11.89 0.00 0.00 2.15
130 131 3.525800 AGGGTAATGGGCCAACATATC 57.474 47.619 11.89 4.60 0.00 1.63
131 132 3.575805 CAAGGGTAATGGGCCAACATAT 58.424 45.455 11.89 0.00 0.00 1.78
132 133 2.952702 GCAAGGGTAATGGGCCAACATA 60.953 50.000 11.89 0.99 0.00 2.29
133 134 1.864669 CAAGGGTAATGGGCCAACAT 58.135 50.000 11.89 2.14 0.00 2.71
134 135 0.902516 GCAAGGGTAATGGGCCAACA 60.903 55.000 11.89 0.00 0.00 3.33
135 136 1.897423 GCAAGGGTAATGGGCCAAC 59.103 57.895 11.89 4.73 0.00 3.77
136 137 1.680651 CGCAAGGGTAATGGGCCAA 60.681 57.895 11.89 0.00 0.00 4.52
137 138 2.044451 CGCAAGGGTAATGGGCCA 60.044 61.111 9.61 9.61 0.00 5.36
138 139 0.755327 ATTCGCAAGGGTAATGGGCC 60.755 55.000 0.00 0.00 38.47 5.80
139 140 1.067060 GAATTCGCAAGGGTAATGGGC 59.933 52.381 0.00 0.00 38.47 5.36
140 141 2.654863 AGAATTCGCAAGGGTAATGGG 58.345 47.619 0.00 0.00 38.47 4.00
141 142 3.734902 GCAAGAATTCGCAAGGGTAATGG 60.735 47.826 0.00 0.00 38.47 3.16
142 143 3.129287 AGCAAGAATTCGCAAGGGTAATG 59.871 43.478 7.88 0.00 38.47 1.90
143 144 3.356290 AGCAAGAATTCGCAAGGGTAAT 58.644 40.909 7.88 0.00 38.47 1.89
144 145 2.747446 GAGCAAGAATTCGCAAGGGTAA 59.253 45.455 7.88 0.00 38.47 2.85
153 154 4.568760 GGGAGAGTTAAGAGCAAGAATTCG 59.431 45.833 0.00 0.00 0.00 3.34
159 160 4.543590 TCTTGGGAGAGTTAAGAGCAAG 57.456 45.455 0.00 0.00 0.00 4.01
163 164 3.677424 CGGCTTCTTGGGAGAGTTAAGAG 60.677 52.174 0.00 0.00 32.59 2.85
205 206 5.177696 CGGAAATTCTAGTTATACTGGCTGC 59.822 44.000 0.00 0.00 0.00 5.25
206 207 5.696724 CCGGAAATTCTAGTTATACTGGCTG 59.303 44.000 0.00 0.00 0.00 4.85
207 208 5.742255 GCCGGAAATTCTAGTTATACTGGCT 60.742 44.000 5.05 0.00 42.85 4.75
219 233 2.893404 GGCGCGCCGGAAATTCTA 60.893 61.111 37.24 0.00 0.00 2.10
245 259 0.179067 AAGAAACAAGCCGTGTCCGA 60.179 50.000 0.00 0.00 40.60 4.55
272 304 0.102481 GATGCTACGACGACATGGGT 59.898 55.000 0.00 0.00 0.00 4.51
274 306 1.540607 GCGATGCTACGACGACATGG 61.541 60.000 0.00 5.00 35.09 3.66
290 322 0.882484 TGGACTTTGCATTGACGCGA 60.882 50.000 15.93 0.00 33.35 5.87
292 324 0.109597 CCTGGACTTTGCATTGACGC 60.110 55.000 0.00 0.00 0.00 5.19
314 346 3.492829 GGCTAGGAATTGAGGTTAGGTCG 60.493 52.174 0.00 0.00 0.00 4.79
315 347 3.712218 AGGCTAGGAATTGAGGTTAGGTC 59.288 47.826 0.00 0.00 0.00 3.85
384 416 4.637534 CCAAAGGAGCACGTAGTAGTAGTA 59.362 45.833 0.00 0.00 41.61 1.82
385 417 3.442977 CCAAAGGAGCACGTAGTAGTAGT 59.557 47.826 0.00 0.00 41.61 2.73
386 418 3.734293 GCCAAAGGAGCACGTAGTAGTAG 60.734 52.174 0.00 0.00 41.61 2.57
387 419 2.165030 GCCAAAGGAGCACGTAGTAGTA 59.835 50.000 0.00 0.00 41.61 1.82
388 420 1.067071 GCCAAAGGAGCACGTAGTAGT 60.067 52.381 0.00 0.00 41.61 2.73
389 421 1.067142 TGCCAAAGGAGCACGTAGTAG 60.067 52.381 0.00 0.00 41.61 2.57
475 538 0.671781 ATCCTTGCAGCACTGTCGAC 60.672 55.000 9.11 9.11 0.00 4.20
481 544 1.822990 CCAAATGATCCTTGCAGCACT 59.177 47.619 0.00 0.00 0.00 4.40
482 545 1.134907 CCCAAATGATCCTTGCAGCAC 60.135 52.381 0.00 0.00 0.00 4.40
483 546 1.187974 CCCAAATGATCCTTGCAGCA 58.812 50.000 0.00 0.00 0.00 4.41
484 547 0.179092 GCCCAAATGATCCTTGCAGC 60.179 55.000 0.00 0.00 0.00 5.25
485 548 1.481871 AGCCCAAATGATCCTTGCAG 58.518 50.000 0.00 0.00 0.00 4.41
486 549 1.941377 AAGCCCAAATGATCCTTGCA 58.059 45.000 0.00 0.00 0.00 4.08
487 550 2.624636 CAAAGCCCAAATGATCCTTGC 58.375 47.619 0.00 0.00 0.00 4.01
502 565 1.308783 GGCTGCACCTACTCCAAAGC 61.309 60.000 0.50 0.00 34.51 3.51
503 566 1.021390 CGGCTGCACCTACTCCAAAG 61.021 60.000 0.50 0.00 35.61 2.77
505 568 1.264749 ATCGGCTGCACCTACTCCAA 61.265 55.000 0.50 0.00 35.61 3.53
506 569 0.396556 TATCGGCTGCACCTACTCCA 60.397 55.000 0.50 0.00 35.61 3.86
507 570 0.032267 GTATCGGCTGCACCTACTCC 59.968 60.000 0.50 0.00 35.61 3.85
508 571 0.032267 GGTATCGGCTGCACCTACTC 59.968 60.000 0.50 0.00 35.61 2.59
534 597 7.501892 TCATGCCAGTTGATAATATAAGTGCAA 59.498 33.333 0.00 0.00 0.00 4.08
544 607 7.658575 GCCAATTTAATCATGCCAGTTGATAAT 59.341 33.333 0.00 0.00 33.52 1.28
545 608 6.985645 GCCAATTTAATCATGCCAGTTGATAA 59.014 34.615 0.00 0.00 33.52 1.75
547 610 5.129815 AGCCAATTTAATCATGCCAGTTGAT 59.870 36.000 0.00 0.00 35.35 2.57
548 611 4.467082 AGCCAATTTAATCATGCCAGTTGA 59.533 37.500 0.00 0.00 0.00 3.18
549 612 4.761975 AGCCAATTTAATCATGCCAGTTG 58.238 39.130 0.00 0.00 0.00 3.16
556 619 7.173907 CCACCTAGTCTAGCCAATTTAATCATG 59.826 40.741 0.86 0.00 0.00 3.07
565 628 2.043227 GCTCCACCTAGTCTAGCCAAT 58.957 52.381 0.86 0.00 0.00 3.16
566 629 1.273041 TGCTCCACCTAGTCTAGCCAA 60.273 52.381 0.86 0.00 32.14 4.52
568 631 1.036707 CTGCTCCACCTAGTCTAGCC 58.963 60.000 0.86 0.00 32.14 3.93
569 632 2.060050 TCTGCTCCACCTAGTCTAGC 57.940 55.000 0.86 0.00 0.00 3.42
570 633 2.295909 GCATCTGCTCCACCTAGTCTAG 59.704 54.545 0.00 0.00 38.21 2.43
571 634 2.311463 GCATCTGCTCCACCTAGTCTA 58.689 52.381 0.00 0.00 38.21 2.59
572 635 1.118838 GCATCTGCTCCACCTAGTCT 58.881 55.000 0.00 0.00 38.21 3.24
573 636 0.249238 CGCATCTGCTCCACCTAGTC 60.249 60.000 0.09 0.00 39.32 2.59
603 666 3.383505 AGGTTTTGCTTAGTTGGGAACAC 59.616 43.478 0.00 0.00 42.67 3.32
614 677 5.697067 TCTTTAAGGGTGAGGTTTTGCTTA 58.303 37.500 0.00 0.00 0.00 3.09
627 690 6.210984 CCTGTTAGTGTACTCTCTTTAAGGGT 59.789 42.308 0.00 0.00 42.98 4.34
628 691 6.351117 CCCTGTTAGTGTACTCTCTTTAAGGG 60.351 46.154 0.00 8.30 32.71 3.95
629 692 6.631962 CCCTGTTAGTGTACTCTCTTTAAGG 58.368 44.000 0.00 3.56 0.00 2.69
630 693 6.071278 AGCCCTGTTAGTGTACTCTCTTTAAG 60.071 42.308 0.00 0.00 0.00 1.85
631 694 5.778750 AGCCCTGTTAGTGTACTCTCTTTAA 59.221 40.000 0.00 0.00 0.00 1.52
632 695 5.331069 AGCCCTGTTAGTGTACTCTCTTTA 58.669 41.667 0.00 0.00 0.00 1.85
633 696 4.161102 AGCCCTGTTAGTGTACTCTCTTT 58.839 43.478 0.00 0.00 0.00 2.52
634 697 3.780626 AGCCCTGTTAGTGTACTCTCTT 58.219 45.455 0.00 0.00 0.00 2.85
635 698 3.459710 AGCCCTGTTAGTGTACTCTCT 57.540 47.619 0.00 0.00 0.00 3.10
636 699 4.538746 AAAGCCCTGTTAGTGTACTCTC 57.461 45.455 0.00 0.00 0.00 3.20
637 700 4.836736 TGTAAAGCCCTGTTAGTGTACTCT 59.163 41.667 2.57 2.57 0.00 3.24
638 701 5.143376 TGTAAAGCCCTGTTAGTGTACTC 57.857 43.478 0.00 0.00 0.00 2.59
639 702 5.163280 TGTTGTAAAGCCCTGTTAGTGTACT 60.163 40.000 0.00 0.00 0.00 2.73
640 703 5.049886 GTGTTGTAAAGCCCTGTTAGTGTAC 60.050 44.000 0.00 0.00 0.00 2.90
641 704 5.058490 GTGTTGTAAAGCCCTGTTAGTGTA 58.942 41.667 0.00 0.00 0.00 2.90
642 705 3.881089 GTGTTGTAAAGCCCTGTTAGTGT 59.119 43.478 0.00 0.00 0.00 3.55
643 706 3.252458 GGTGTTGTAAAGCCCTGTTAGTG 59.748 47.826 0.00 0.00 0.00 2.74
644 707 3.117813 TGGTGTTGTAAAGCCCTGTTAGT 60.118 43.478 0.00 0.00 0.00 2.24
645 708 3.482436 TGGTGTTGTAAAGCCCTGTTAG 58.518 45.455 0.00 0.00 0.00 2.34
646 709 3.579534 TGGTGTTGTAAAGCCCTGTTA 57.420 42.857 0.00 0.00 0.00 2.41
647 710 2.445682 TGGTGTTGTAAAGCCCTGTT 57.554 45.000 0.00 0.00 0.00 3.16
648 711 2.675658 ATGGTGTTGTAAAGCCCTGT 57.324 45.000 0.00 0.00 0.00 4.00
649 712 4.677779 GCATAATGGTGTTGTAAAGCCCTG 60.678 45.833 0.00 0.00 0.00 4.45
650 713 3.447229 GCATAATGGTGTTGTAAAGCCCT 59.553 43.478 0.00 0.00 0.00 5.19
651 714 3.447229 AGCATAATGGTGTTGTAAAGCCC 59.553 43.478 0.00 0.00 0.00 5.19
652 715 4.423732 CAGCATAATGGTGTTGTAAAGCC 58.576 43.478 0.00 0.00 40.68 4.35
653 716 3.859386 GCAGCATAATGGTGTTGTAAAGC 59.141 43.478 0.00 0.00 46.67 3.51
654 717 4.423732 GGCAGCATAATGGTGTTGTAAAG 58.576 43.478 0.00 0.00 46.67 1.85
655 718 3.194542 GGGCAGCATAATGGTGTTGTAAA 59.805 43.478 0.00 0.00 46.67 2.01
656 719 2.757868 GGGCAGCATAATGGTGTTGTAA 59.242 45.455 0.00 0.00 46.67 2.41
657 720 2.291217 TGGGCAGCATAATGGTGTTGTA 60.291 45.455 0.00 0.00 46.67 2.41
658 721 1.185315 GGGCAGCATAATGGTGTTGT 58.815 50.000 0.00 0.00 46.67 3.32
659 722 1.184431 TGGGCAGCATAATGGTGTTG 58.816 50.000 0.00 1.68 46.67 3.33
660 723 1.758280 CATGGGCAGCATAATGGTGTT 59.242 47.619 0.00 0.00 46.67 3.32
661 724 1.405872 CATGGGCAGCATAATGGTGT 58.594 50.000 0.00 0.00 46.67 4.16
663 726 2.433217 GCATGGGCAGCATAATGGT 58.567 52.632 0.00 0.00 40.72 3.55
700 763 4.201647 CGACGGCAATTGTTTCGTTAGTAT 60.202 41.667 18.87 2.34 35.91 2.12
707 770 0.452122 GACCGACGGCAATTGTTTCG 60.452 55.000 15.39 11.95 0.00 3.46
724 787 2.224769 TGGTCTGGTTCCAAATGGAGAC 60.225 50.000 9.81 9.81 46.36 3.36
877 973 1.822990 TCGTTCCATCCACTCCACTAC 59.177 52.381 0.00 0.00 0.00 2.73
878 974 2.225382 TCGTTCCATCCACTCCACTA 57.775 50.000 0.00 0.00 0.00 2.74
937 1033 8.607459 CACACTGCTTCCATTTTATAGAACTAG 58.393 37.037 0.00 0.00 0.00 2.57
938 1034 7.065803 GCACACTGCTTCCATTTTATAGAACTA 59.934 37.037 0.00 0.00 40.96 2.24
939 1035 6.127897 GCACACTGCTTCCATTTTATAGAACT 60.128 38.462 0.00 0.00 40.96 3.01
940 1036 6.030228 GCACACTGCTTCCATTTTATAGAAC 58.970 40.000 0.00 0.00 40.96 3.01
999 1095 4.160642 TCTCTTGGATGATGAACCCATG 57.839 45.455 0.00 0.00 32.09 3.66
1039 1140 5.703130 AGGTTGAGAAGTAGAAAGATGCAAC 59.297 40.000 0.00 0.00 34.11 4.17
1060 1161 1.501654 GGGAAGAAGGCAAGGGAGGT 61.502 60.000 0.00 0.00 0.00 3.85
1099 1200 1.001641 GCTCAACTGGATGGGCACT 60.002 57.895 3.10 0.00 46.33 4.40
1111 1212 1.282875 GCTTTGGACCGTGCTCAAC 59.717 57.895 0.00 0.00 0.00 3.18
1120 1221 1.228459 AAAGACCCGGCTTTGGACC 60.228 57.895 6.30 0.00 36.77 4.46
1131 1232 4.906618 TGTAGAAATGTGGAGAAAGACCC 58.093 43.478 0.00 0.00 0.00 4.46
1134 1235 6.213397 TGGATCTGTAGAAATGTGGAGAAAGA 59.787 38.462 0.00 0.00 0.00 2.52
1155 1256 3.142838 GCTTGCGGGCATGTGGAT 61.143 61.111 8.13 0.00 0.00 3.41
1307 1408 5.415389 TGTGCATTTGAGCTGAGCTTAATAA 59.585 36.000 12.58 0.00 39.88 1.40
1316 1417 3.151554 AGTTGATGTGCATTTGAGCTGA 58.848 40.909 0.00 0.00 34.99 4.26
1318 1419 4.330250 ACTAGTTGATGTGCATTTGAGCT 58.670 39.130 0.00 0.00 34.99 4.09
1349 1450 5.144100 TGGTGAATTTTGTGGTTGTAGGAT 58.856 37.500 0.00 0.00 0.00 3.24
1365 1466 6.757237 TGCACAATTCAAACTTATGGTGAAT 58.243 32.000 0.00 0.00 42.38 2.57
1380 1481 6.475402 CGGGTTATTAAGGAAATGCACAATTC 59.525 38.462 0.00 0.00 0.00 2.17
1397 1498 3.662759 ATCATGGTGTTCCGGGTTATT 57.337 42.857 0.00 0.00 36.30 1.40
1465 1569 7.167468 CCTGAAATTCGACGAAAATGTTTTCTT 59.833 33.333 23.50 6.76 43.27 2.52
1467 1571 6.129194 CCCTGAAATTCGACGAAAATGTTTTC 60.129 38.462 15.22 17.89 42.30 2.29
1482 1586 0.101219 GCATCGCACCCCTGAAATTC 59.899 55.000 0.00 0.00 0.00 2.17
1493 1597 2.809601 AGAACGGACGCATCGCAC 60.810 61.111 0.00 0.00 0.00 5.34
1502 1606 0.037326 TGTCATCCAGCAGAACGGAC 60.037 55.000 0.00 0.00 33.05 4.79
1514 1618 0.524862 CAACTGCCTTGCTGTCATCC 59.475 55.000 0.00 0.00 39.66 3.51
1544 1648 1.878953 TCTTGTTGGGAAGAGCGTTC 58.121 50.000 0.00 0.00 0.00 3.95
1646 1750 0.181114 TGGCAGCTAGGGCAATAGTG 59.819 55.000 0.00 0.00 40.73 2.74
1757 1861 2.024176 TCCCCTCACTACAGAAGCAA 57.976 50.000 0.00 0.00 0.00 3.91
1836 2026 6.426937 CCCCCACTATACATCATTAGTTTTCG 59.573 42.308 0.00 0.00 0.00 3.46
1863 2053 7.503521 AGTTCCTTTGAGAAATTCTCTGTTC 57.496 36.000 21.89 7.84 43.73 3.18
1870 2060 9.286170 ACCTAAAGTAGTTCCTTTGAGAAATTC 57.714 33.333 0.00 0.00 36.18 2.17
1943 2133 9.638239 AACAACATCACAACCACATATTTAATC 57.362 29.630 0.00 0.00 0.00 1.75
2193 2388 7.724128 AACCTTTTTGTTTTACGACTTTACG 57.276 32.000 0.00 0.00 39.31 3.18
2263 2458 5.148651 AGCTTAAGTTTATGACAGGACGT 57.851 39.130 4.02 0.00 0.00 4.34
2265 2460 7.435068 TTCAAGCTTAAGTTTATGACAGGAC 57.565 36.000 4.08 0.00 0.00 3.85
2315 2510 7.230510 ACTTCATGCACTTTTGTTTATCCACTA 59.769 33.333 0.00 0.00 0.00 2.74
2332 2527 8.882736 CAGATACATTACTTACAACTTCATGCA 58.117 33.333 0.00 0.00 0.00 3.96
2337 2532 7.764443 TCCAGCAGATACATTACTTACAACTTC 59.236 37.037 0.00 0.00 0.00 3.01
2421 2619 3.770666 ACGATGATCTAACTGGAACACG 58.229 45.455 0.00 0.00 0.00 4.49
2439 2637 3.869065 CTGGTTTCAAGGCCTATAACGA 58.131 45.455 5.16 7.36 0.00 3.85
2444 2642 1.957113 GCTGCTGGTTTCAAGGCCTAT 60.957 52.381 5.16 0.00 0.00 2.57
2445 2643 0.609131 GCTGCTGGTTTCAAGGCCTA 60.609 55.000 5.16 0.00 0.00 3.93
2464 2662 8.775220 TTCGTGGTATTAAATATGAAATTGCG 57.225 30.769 0.00 0.00 0.00 4.85
2498 2696 1.349688 CCAGTACTTGGCCAGTGGTAA 59.650 52.381 11.74 5.95 40.87 2.85
2503 2701 0.766674 TGACCCAGTACTTGGCCAGT 60.767 55.000 12.86 9.35 46.32 4.00
2515 2713 4.529769 TGATAGGAGAATATGCTGACCCAG 59.470 45.833 0.00 0.00 34.12 4.45
2516 2714 4.492646 TGATAGGAGAATATGCTGACCCA 58.507 43.478 0.00 0.00 0.00 4.51
2541 2739 6.821665 GGAATGCAAGTAAGGTAGAATGTGTA 59.178 38.462 0.00 0.00 0.00 2.90
2546 2744 5.193679 GTGGGAATGCAAGTAAGGTAGAAT 58.806 41.667 0.00 0.00 0.00 2.40
2550 2748 3.308117 CCTGTGGGAATGCAAGTAAGGTA 60.308 47.826 0.00 0.00 33.58 3.08
2552 2750 2.094675 CCTGTGGGAATGCAAGTAAGG 58.905 52.381 0.00 0.00 33.58 2.69
2556 2754 1.614317 GCTACCTGTGGGAATGCAAGT 60.614 52.381 0.00 0.00 36.25 3.16
2558 2756 0.323360 GGCTACCTGTGGGAATGCAA 60.323 55.000 0.00 0.00 36.25 4.08
2567 2765 0.740868 CGATGGTGTGGCTACCTGTG 60.741 60.000 11.72 0.09 41.43 3.66
2585 2783 1.942657 CTAACACATCTGGCCATTCCG 59.057 52.381 5.51 0.00 37.80 4.30
2634 2832 3.306166 GTCATGTCCGGTTTGTTATCTCG 59.694 47.826 0.00 0.00 0.00 4.04
2658 2856 7.013274 CAGTTTGTGATAGAACCTTTTCTCCAA 59.987 37.037 0.00 0.00 41.48 3.53
2705 2903 3.609853 GCTGATGTTGTTATCACCTCCA 58.390 45.455 0.00 0.00 33.71 3.86
2729 2927 0.615850 GAGGGCTGGCAAAGTCTAGT 59.384 55.000 2.88 0.00 0.00 2.57
2756 2954 8.094548 ACTATCAACTTGTAATAGCTGTTGTCA 58.905 33.333 5.89 2.69 39.03 3.58
2831 3029 1.282157 AGGTGTGCTATTTCTGGGTCC 59.718 52.381 0.00 0.00 0.00 4.46
2978 3176 5.755375 ACTTATTGACTAGCGGACATGATTG 59.245 40.000 0.00 0.00 0.00 2.67
2987 3185 3.736252 CCATCGAACTTATTGACTAGCGG 59.264 47.826 0.00 0.00 0.00 5.52
2998 3196 4.331968 AGCAAATGAACCCATCGAACTTA 58.668 39.130 0.00 0.00 31.40 2.24
3005 3203 3.940209 TCACAAGCAAATGAACCCATC 57.060 42.857 0.00 0.00 31.40 3.51
3014 3212 2.627699 ACCGTGGAAATCACAAGCAAAT 59.372 40.909 0.00 0.00 46.36 2.32
3186 3384 7.059202 AGTTTTCTTCTTTGCATCTTCCATT 57.941 32.000 0.00 0.00 0.00 3.16
3212 3410 3.198200 ACTGCATCTGAAATCAGCTCTCT 59.802 43.478 5.53 0.00 43.46 3.10
3276 3474 5.438761 AGGTTTGCACTTTGTACTCATTC 57.561 39.130 0.00 0.00 0.00 2.67
3285 3483 4.630894 TGTCTTGTAGGTTTGCACTTTG 57.369 40.909 0.00 0.00 0.00 2.77
3317 3515 6.166982 GGGACAATATGAGCCATACTTAGTC 58.833 44.000 0.00 0.00 0.00 2.59
3360 3558 1.070275 CACACCAGCAGCACAGAGA 59.930 57.895 0.00 0.00 0.00 3.10
3443 3641 2.327325 TGGAAGACCAAGAGGCTACT 57.673 50.000 0.00 0.00 43.91 2.57
3487 3685 4.764050 TGTGAACAAAGGGAGTACTTCA 57.236 40.909 2.92 0.00 0.00 3.02
3522 3720 6.369065 ACATCCGATTCACAGAAAAGTTAGAC 59.631 38.462 0.00 0.00 0.00 2.59
3533 3731 6.743172 CGTGTCTATATACATCCGATTCACAG 59.257 42.308 0.00 0.00 0.00 3.66
3560 3758 9.337396 TGAAAATGAGTGAACTAACACACTAAT 57.663 29.630 0.00 0.00 45.54 1.73
3567 3765 7.047891 ACAGACTGAAAATGAGTGAACTAACA 58.952 34.615 10.08 0.00 0.00 2.41
3616 3814 8.122952 CCTCCGTTCACAAATATAAGATGTTTC 58.877 37.037 0.00 0.00 0.00 2.78
3652 4292 5.345702 ACGATCGTGCTAGTTTATGCTTAA 58.654 37.500 22.06 0.00 0.00 1.85
3657 4297 5.458779 TCATTGACGATCGTGCTAGTTTATG 59.541 40.000 28.12 15.09 0.00 1.90
3658 4298 5.588240 TCATTGACGATCGTGCTAGTTTAT 58.412 37.500 28.12 4.06 0.00 1.40
3669 6167 3.001634 CCTGACCAAATCATTGACGATCG 59.998 47.826 14.88 14.88 38.94 3.69
3699 6197 6.600882 ACTTCAATTTGAATTCTGAGCCAT 57.399 33.333 12.04 0.00 35.59 4.40
3700 6198 6.716628 AGTACTTCAATTTGAATTCTGAGCCA 59.283 34.615 12.04 0.00 35.59 4.75
3730 6228 2.146342 CGTGTCTGCCTTTCTTGATGT 58.854 47.619 0.00 0.00 0.00 3.06
3735 6233 1.692519 ACTACCGTGTCTGCCTTTCTT 59.307 47.619 0.00 0.00 0.00 2.52
3816 6314 2.620115 ACATTGCCATATTGGAAGCTCG 59.380 45.455 0.00 0.00 40.96 5.03
3895 6393 3.381590 GTGGGGGATTCATCTACAAAAGC 59.618 47.826 0.00 0.00 0.00 3.51
3910 6408 0.111639 GCCTACTTTGTTGTGGGGGA 59.888 55.000 0.00 0.00 38.75 4.81
3965 6463 5.794687 TGTGTGTTTACAGTTCTGACTTG 57.205 39.130 6.83 0.00 37.52 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.