Multiple sequence alignment - TraesCS3B01G208200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G208200 chr3B 100.000 4331 0 0 1 4331 244234387 244238717 0.000000e+00 7998.0
1 TraesCS3B01G208200 chr3B 78.216 964 193 13 2380 3332 243940148 243941105 6.200000e-168 601.0
2 TraesCS3B01G208200 chr3B 86.420 81 8 3 3434 3512 75663704 75663625 7.720000e-13 86.1
3 TraesCS3B01G208200 chr3A 95.760 4057 127 23 204 4225 197864221 197860175 0.000000e+00 6497.0
4 TraesCS3B01G208200 chr3A 97.414 116 3 0 4117 4232 197860177 197860062 9.500000e-47 198.0
5 TraesCS3B01G208200 chr3A 96.078 102 3 1 4224 4325 197859178 197859078 9.640000e-37 165.0
6 TraesCS3B01G208200 chr3D 93.424 1551 58 17 204 1741 169424292 169425811 0.000000e+00 2259.0
7 TraesCS3B01G208200 chr3D 97.446 1253 28 4 2170 3419 169426527 169427778 0.000000e+00 2134.0
8 TraesCS3B01G208200 chr3D 95.118 635 19 5 3699 4331 169428203 169428827 0.000000e+00 990.0
9 TraesCS3B01G208200 chr3D 95.181 415 19 1 1772 2186 169425807 169426220 0.000000e+00 654.0
10 TraesCS3B01G208200 chr3D 93.510 339 12 2 3370 3698 169427821 169428159 3.010000e-136 496.0
11 TraesCS3B01G208200 chr3D 97.596 208 5 0 1 208 337501074 337501281 1.480000e-94 357.0
12 TraesCS3B01G208200 chr3D 97.115 208 6 0 1 208 117997051 117996844 6.890000e-93 351.0
13 TraesCS3B01G208200 chr3D 100.000 50 0 0 3370 3419 169427775 169427824 4.610000e-15 93.5
14 TraesCS3B01G208200 chr1A 99.038 208 2 0 1 208 58069013 58068806 1.470000e-99 374.0
15 TraesCS3B01G208200 chr4D 97.596 208 5 0 1 208 32130207 32130000 1.480000e-94 357.0
16 TraesCS3B01G208200 chr4D 97.596 208 5 0 1 208 111718176 111717969 1.480000e-94 357.0
17 TraesCS3B01G208200 chr4D 97.115 208 6 0 1 208 368597992 368597785 6.890000e-93 351.0
18 TraesCS3B01G208200 chr1D 97.596 208 5 0 1 208 272615103 272614896 1.480000e-94 357.0
19 TraesCS3B01G208200 chr2D 97.561 205 5 0 1 205 267844071 267843867 6.890000e-93 351.0
20 TraesCS3B01G208200 chr2D 97.115 208 6 0 1 208 442865771 442865978 6.890000e-93 351.0
21 TraesCS3B01G208200 chr5B 91.549 71 5 1 3440 3509 660636898 660636828 3.570000e-16 97.1
22 TraesCS3B01G208200 chr6A 90.541 74 4 3 3438 3509 54489008 54489080 1.280000e-15 95.3
23 TraesCS3B01G208200 chr7D 82.301 113 14 5 3440 3547 446218376 446218265 4.610000e-15 93.5
24 TraesCS3B01G208200 chr7B 83.810 105 9 1 3442 3538 124235950 124235846 4.610000e-15 93.5
25 TraesCS3B01G208200 chr2B 87.179 78 6 3 3435 3509 690727360 690727284 7.720000e-13 86.1
26 TraesCS3B01G208200 chr7A 80.833 120 12 6 3438 3547 168333318 168333200 2.780000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G208200 chr3B 244234387 244238717 4330 False 7998.000000 7998 100.000000 1 4331 1 chr3B.!!$F2 4330
1 TraesCS3B01G208200 chr3B 243940148 243941105 957 False 601.000000 601 78.216000 2380 3332 1 chr3B.!!$F1 952
2 TraesCS3B01G208200 chr3A 197859078 197864221 5143 True 2286.666667 6497 96.417333 204 4325 3 chr3A.!!$R1 4121
3 TraesCS3B01G208200 chr3D 169424292 169428827 4535 False 1104.416667 2259 95.779833 204 4331 6 chr3D.!!$F2 4127

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.806241 TCGAAAAACGCATTAGGCCC 59.194 50.000 0.0 0.0 42.26 5.80 F
182 183 0.808755 CGAAAAACGCATTAGGCCCT 59.191 50.000 0.0 0.0 40.31 5.19 F
1215 1234 1.202758 ACGAAGAGTGGTTCCATTGCA 60.203 47.619 0.0 0.0 0.00 4.08 F
2040 2065 1.745653 GGGAGCAAAAGTATCTGTGCC 59.254 52.381 0.0 0.0 37.73 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1698 1723 0.536233 ACCACAACGTGCCAGCATAA 60.536 50.000 0.00 0.0 31.34 1.90 R
1969 1994 1.423541 ACCAACTACTGTGGGCATTGA 59.576 47.619 0.00 0.0 41.04 2.57 R
2312 2665 0.481567 TATACCTCGGGGGAGGAGTG 59.518 60.000 16.59 0.0 45.00 3.51 R
3780 4284 0.396435 AAACCGATGACAGCACTCCA 59.604 50.000 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.887626 TTTTTAAGACCGCCTTTGACTATT 57.112 33.333 0.00 0.00 36.34 1.73
24 25 5.873179 TTTAAGACCGCCTTTGACTATTG 57.127 39.130 0.00 0.00 36.34 1.90
25 26 3.695830 AAGACCGCCTTTGACTATTGA 57.304 42.857 0.00 0.00 0.00 2.57
26 27 2.973945 AGACCGCCTTTGACTATTGAC 58.026 47.619 0.00 0.00 0.00 3.18
27 28 2.301870 AGACCGCCTTTGACTATTGACA 59.698 45.455 0.00 0.00 0.00 3.58
28 29 3.071479 GACCGCCTTTGACTATTGACAA 58.929 45.455 0.00 0.00 0.00 3.18
29 30 3.074412 ACCGCCTTTGACTATTGACAAG 58.926 45.455 0.00 0.00 0.00 3.16
30 31 3.244422 ACCGCCTTTGACTATTGACAAGA 60.244 43.478 0.00 0.00 0.00 3.02
31 32 3.941483 CCGCCTTTGACTATTGACAAGAT 59.059 43.478 0.00 0.00 0.00 2.40
32 33 4.396166 CCGCCTTTGACTATTGACAAGATT 59.604 41.667 0.00 0.00 0.00 2.40
33 34 5.584649 CCGCCTTTGACTATTGACAAGATTA 59.415 40.000 0.00 0.00 0.00 1.75
34 35 6.093495 CCGCCTTTGACTATTGACAAGATTAA 59.907 38.462 0.00 0.00 0.00 1.40
35 36 7.201732 CCGCCTTTGACTATTGACAAGATTAAT 60.202 37.037 0.00 0.00 0.00 1.40
36 37 8.826710 CGCCTTTGACTATTGACAAGATTAATA 58.173 33.333 0.00 0.00 0.00 0.98
49 50 9.045223 TGACAAGATTAATAGTACATGACATGC 57.955 33.333 15.49 0.11 0.00 4.06
50 51 8.962884 ACAAGATTAATAGTACATGACATGCA 57.037 30.769 15.49 0.00 0.00 3.96
51 52 9.565090 ACAAGATTAATAGTACATGACATGCAT 57.435 29.630 15.49 0.00 37.85 3.96
89 90 6.899393 ATCATTTTAAGCTCCTTTCACACA 57.101 33.333 0.00 0.00 0.00 3.72
90 91 6.072112 TCATTTTAAGCTCCTTTCACACAC 57.928 37.500 0.00 0.00 0.00 3.82
91 92 4.545823 TTTTAAGCTCCTTTCACACACG 57.454 40.909 0.00 0.00 0.00 4.49
92 93 3.462483 TTAAGCTCCTTTCACACACGA 57.538 42.857 0.00 0.00 0.00 4.35
93 94 2.325583 AAGCTCCTTTCACACACGAA 57.674 45.000 0.00 0.00 0.00 3.85
94 95 2.550830 AGCTCCTTTCACACACGAAT 57.449 45.000 0.00 0.00 0.00 3.34
95 96 2.851195 AGCTCCTTTCACACACGAATT 58.149 42.857 0.00 0.00 0.00 2.17
96 97 3.214328 AGCTCCTTTCACACACGAATTT 58.786 40.909 0.00 0.00 0.00 1.82
97 98 4.385825 AGCTCCTTTCACACACGAATTTA 58.614 39.130 0.00 0.00 0.00 1.40
98 99 4.819630 AGCTCCTTTCACACACGAATTTAA 59.180 37.500 0.00 0.00 0.00 1.52
99 100 4.909880 GCTCCTTTCACACACGAATTTAAC 59.090 41.667 0.00 0.00 0.00 2.01
100 101 5.085636 TCCTTTCACACACGAATTTAACG 57.914 39.130 0.00 0.00 0.00 3.18
101 102 4.024725 TCCTTTCACACACGAATTTAACGG 60.025 41.667 0.00 0.00 34.93 4.44
102 103 4.260866 CCTTTCACACACGAATTTAACGGT 60.261 41.667 0.00 0.00 34.93 4.83
103 104 3.863396 TCACACACGAATTTAACGGTG 57.137 42.857 0.00 0.00 37.66 4.94
104 105 3.196463 TCACACACGAATTTAACGGTGT 58.804 40.909 0.00 0.00 41.61 4.16
105 106 3.284914 CACACACGAATTTAACGGTGTG 58.715 45.455 18.39 18.39 45.49 3.82
106 107 2.286536 ACACACGAATTTAACGGTGTGC 60.287 45.455 19.53 0.00 41.40 4.57
107 108 2.032377 CACACGAATTTAACGGTGTGCT 60.032 45.455 9.81 0.00 36.70 4.40
108 109 2.614983 ACACGAATTTAACGGTGTGCTT 59.385 40.909 0.00 0.00 34.93 3.91
109 110 3.065648 ACACGAATTTAACGGTGTGCTTT 59.934 39.130 0.00 0.00 34.93 3.51
110 111 3.420576 CACGAATTTAACGGTGTGCTTTG 59.579 43.478 0.00 0.00 34.93 2.77
111 112 3.065648 ACGAATTTAACGGTGTGCTTTGT 59.934 39.130 0.00 0.00 34.93 2.83
112 113 3.420576 CGAATTTAACGGTGTGCTTTGTG 59.579 43.478 0.00 0.00 0.00 3.33
113 114 4.356289 GAATTTAACGGTGTGCTTTGTGT 58.644 39.130 0.00 0.00 0.00 3.72
114 115 5.502153 AATTTAACGGTGTGCTTTGTGTA 57.498 34.783 0.00 0.00 0.00 2.90
115 116 4.959596 TTTAACGGTGTGCTTTGTGTAA 57.040 36.364 0.00 0.00 0.00 2.41
116 117 4.539509 TTAACGGTGTGCTTTGTGTAAG 57.460 40.909 0.00 0.00 36.90 2.34
117 118 2.032680 ACGGTGTGCTTTGTGTAAGT 57.967 45.000 0.00 0.00 36.19 2.24
118 119 2.361789 ACGGTGTGCTTTGTGTAAGTT 58.638 42.857 0.00 0.00 36.19 2.66
119 120 2.096819 ACGGTGTGCTTTGTGTAAGTTG 59.903 45.455 0.00 0.00 36.19 3.16
120 121 2.459934 GGTGTGCTTTGTGTAAGTTGC 58.540 47.619 0.00 0.00 36.19 4.17
121 122 2.159310 GGTGTGCTTTGTGTAAGTTGCA 60.159 45.455 0.00 0.00 36.19 4.08
122 123 3.490761 GGTGTGCTTTGTGTAAGTTGCAT 60.491 43.478 0.00 0.00 36.19 3.96
123 124 3.486841 GTGTGCTTTGTGTAAGTTGCATG 59.513 43.478 0.00 0.00 36.19 4.06
124 125 3.130164 TGTGCTTTGTGTAAGTTGCATGT 59.870 39.130 0.00 0.00 36.19 3.21
125 126 3.730715 GTGCTTTGTGTAAGTTGCATGTC 59.269 43.478 0.00 0.00 36.19 3.06
126 127 3.379688 TGCTTTGTGTAAGTTGCATGTCA 59.620 39.130 0.00 0.00 36.19 3.58
127 128 4.037803 TGCTTTGTGTAAGTTGCATGTCAT 59.962 37.500 0.00 0.00 36.19 3.06
128 129 5.240403 TGCTTTGTGTAAGTTGCATGTCATA 59.760 36.000 0.00 0.00 36.19 2.15
129 130 6.072008 TGCTTTGTGTAAGTTGCATGTCATAT 60.072 34.615 0.00 0.00 36.19 1.78
130 131 7.120432 TGCTTTGTGTAAGTTGCATGTCATATA 59.880 33.333 0.00 0.00 36.19 0.86
131 132 8.131100 GCTTTGTGTAAGTTGCATGTCATATAT 58.869 33.333 0.00 0.00 36.19 0.86
140 141 8.859236 AGTTGCATGTCATATATTATTGCTCT 57.141 30.769 0.00 0.00 0.00 4.09
141 142 9.948964 AGTTGCATGTCATATATTATTGCTCTA 57.051 29.630 0.00 0.00 0.00 2.43
156 157 6.655078 ATTGCTCTAATGTTTGGTCAAAGT 57.345 33.333 0.00 0.00 0.00 2.66
157 158 6.463995 TTGCTCTAATGTTTGGTCAAAGTT 57.536 33.333 0.00 0.00 0.00 2.66
158 159 7.575414 TTGCTCTAATGTTTGGTCAAAGTTA 57.425 32.000 0.00 0.26 0.00 2.24
159 160 7.202016 TGCTCTAATGTTTGGTCAAAGTTAG 57.798 36.000 15.25 15.25 34.43 2.34
160 161 6.770785 TGCTCTAATGTTTGGTCAAAGTTAGT 59.229 34.615 18.00 5.27 34.58 2.24
161 162 7.041372 TGCTCTAATGTTTGGTCAAAGTTAGTC 60.041 37.037 18.00 14.29 34.58 2.59
162 163 7.173390 GCTCTAATGTTTGGTCAAAGTTAGTCT 59.827 37.037 18.00 0.00 34.58 3.24
163 164 8.603242 TCTAATGTTTGGTCAAAGTTAGTCTC 57.397 34.615 18.00 1.56 34.58 3.36
164 165 5.924475 ATGTTTGGTCAAAGTTAGTCTCG 57.076 39.130 0.00 0.00 0.00 4.04
165 166 5.013568 TGTTTGGTCAAAGTTAGTCTCGA 57.986 39.130 0.00 0.00 0.00 4.04
166 167 5.421277 TGTTTGGTCAAAGTTAGTCTCGAA 58.579 37.500 0.00 0.00 0.00 3.71
167 168 5.875910 TGTTTGGTCAAAGTTAGTCTCGAAA 59.124 36.000 0.00 0.00 0.00 3.46
168 169 6.372103 TGTTTGGTCAAAGTTAGTCTCGAAAA 59.628 34.615 0.00 0.00 0.00 2.29
169 170 6.988622 TTGGTCAAAGTTAGTCTCGAAAAA 57.011 33.333 0.00 0.00 0.00 1.94
170 171 6.354039 TGGTCAAAGTTAGTCTCGAAAAAC 57.646 37.500 0.00 0.00 0.00 2.43
171 172 5.005971 TGGTCAAAGTTAGTCTCGAAAAACG 59.994 40.000 0.00 0.00 44.09 3.60
172 173 4.896799 GTCAAAGTTAGTCTCGAAAAACGC 59.103 41.667 0.00 0.00 42.26 4.84
173 174 4.567558 TCAAAGTTAGTCTCGAAAAACGCA 59.432 37.500 0.00 0.00 42.26 5.24
174 175 5.235616 TCAAAGTTAGTCTCGAAAAACGCAT 59.764 36.000 0.00 0.00 42.26 4.73
175 176 5.668558 AAGTTAGTCTCGAAAAACGCATT 57.331 34.783 0.00 0.00 42.26 3.56
176 177 6.774354 AAGTTAGTCTCGAAAAACGCATTA 57.226 33.333 0.00 0.00 42.26 1.90
177 178 6.390987 AGTTAGTCTCGAAAAACGCATTAG 57.609 37.500 0.00 0.00 42.26 1.73
178 179 5.347907 AGTTAGTCTCGAAAAACGCATTAGG 59.652 40.000 0.00 0.00 42.26 2.69
179 180 2.415512 AGTCTCGAAAAACGCATTAGGC 59.584 45.455 0.00 0.00 42.26 3.93
180 181 1.735571 TCTCGAAAAACGCATTAGGCC 59.264 47.619 0.00 0.00 42.26 5.19
181 182 0.806241 TCGAAAAACGCATTAGGCCC 59.194 50.000 0.00 0.00 42.26 5.80
182 183 0.808755 CGAAAAACGCATTAGGCCCT 59.191 50.000 0.00 0.00 40.31 5.19
183 184 2.011222 CGAAAAACGCATTAGGCCCTA 58.989 47.619 0.00 0.00 40.31 3.53
184 185 2.616842 CGAAAAACGCATTAGGCCCTAT 59.383 45.455 0.00 0.00 40.31 2.57
185 186 3.810941 CGAAAAACGCATTAGGCCCTATA 59.189 43.478 0.00 0.00 40.31 1.31
186 187 4.454504 CGAAAAACGCATTAGGCCCTATAT 59.545 41.667 0.00 0.00 40.31 0.86
187 188 5.640357 CGAAAAACGCATTAGGCCCTATATA 59.360 40.000 0.00 0.00 40.31 0.86
188 189 6.183360 CGAAAAACGCATTAGGCCCTATATAG 60.183 42.308 0.00 2.46 40.31 1.31
189 190 6.368779 AAAACGCATTAGGCCCTATATAGA 57.631 37.500 11.53 0.00 40.31 1.98
190 191 6.561519 AAACGCATTAGGCCCTATATAGAT 57.438 37.500 11.53 0.00 40.31 1.98
191 192 5.537300 ACGCATTAGGCCCTATATAGATG 57.463 43.478 11.53 6.87 40.31 2.90
192 193 4.345257 ACGCATTAGGCCCTATATAGATGG 59.655 45.833 11.53 6.04 40.31 3.51
193 194 4.588951 CGCATTAGGCCCTATATAGATGGA 59.411 45.833 11.53 0.00 40.31 3.41
194 195 5.070446 CGCATTAGGCCCTATATAGATGGAA 59.930 44.000 11.53 0.00 40.31 3.53
195 196 6.529220 GCATTAGGCCCTATATAGATGGAAG 58.471 44.000 11.53 0.00 36.11 3.46
196 197 6.465035 GCATTAGGCCCTATATAGATGGAAGG 60.465 46.154 11.53 3.94 36.11 3.46
197 198 4.994411 AGGCCCTATATAGATGGAAGGA 57.006 45.455 11.53 0.00 0.00 3.36
198 199 4.889780 AGGCCCTATATAGATGGAAGGAG 58.110 47.826 11.53 0.00 0.00 3.69
199 200 3.970640 GGCCCTATATAGATGGAAGGAGG 59.029 52.174 11.53 1.87 0.00 4.30
200 201 3.970640 GCCCTATATAGATGGAAGGAGGG 59.029 52.174 11.53 3.52 44.52 4.30
201 202 4.327010 GCCCTATATAGATGGAAGGAGGGA 60.327 50.000 11.53 0.00 44.48 4.20
202 203 5.463154 CCCTATATAGATGGAAGGAGGGAG 58.537 50.000 11.53 0.00 44.48 4.30
266 267 6.728632 AGCATCCTTTTGTATTCCCCTTTAAA 59.271 34.615 0.00 0.00 0.00 1.52
268 269 7.710907 GCATCCTTTTGTATTCCCCTTTAAATC 59.289 37.037 0.00 0.00 0.00 2.17
553 556 6.206829 TCTGATCGTACTATCAAGTATGTGGG 59.793 42.308 10.89 0.00 43.16 4.61
612 615 4.398319 TGTCCTCTCACTTTTCCCATTTC 58.602 43.478 0.00 0.00 0.00 2.17
653 656 7.147915 CCATGCCTCCTTTTTATACTGCTTTTA 60.148 37.037 0.00 0.00 0.00 1.52
657 660 9.338622 GCCTCCTTTTTATACTGCTTTTATAGA 57.661 33.333 0.00 0.00 0.00 1.98
893 912 9.755064 CCTTATTGTTGTACTCTTTTTATGTCG 57.245 33.333 0.00 0.00 0.00 4.35
1186 1205 4.576463 CCAACCATAGTAGTGGAAGCATTC 59.424 45.833 0.00 0.00 46.67 2.67
1215 1234 1.202758 ACGAAGAGTGGTTCCATTGCA 60.203 47.619 0.00 0.00 0.00 4.08
1255 1274 2.270434 TGGAGGTAGCCCTTCTGAAT 57.730 50.000 0.00 0.00 42.86 2.57
1345 1364 9.921637 CTGATCCTAGAGGTAAATAATTCAGTC 57.078 37.037 0.00 0.00 36.34 3.51
1346 1365 9.434275 TGATCCTAGAGGTAAATAATTCAGTCA 57.566 33.333 0.00 0.00 36.34 3.41
1454 1478 6.653989 AGTCAAATAAGTCTAACCAGATGGG 58.346 40.000 3.48 0.00 44.81 4.00
1467 1492 5.070823 ACCAGATGGGCATGATTATCTTT 57.929 39.130 3.48 0.00 42.05 2.52
1695 1720 5.269554 AGAAAAGGGTGAATTGGGTCATA 57.730 39.130 0.00 0.00 0.00 2.15
1698 1723 4.675063 AAGGGTGAATTGGGTCATAGTT 57.325 40.909 0.00 0.00 0.00 2.24
1836 1861 2.744202 AGCTAGCAGGAAAACAACATCG 59.256 45.455 18.83 0.00 0.00 3.84
1838 1863 3.667960 GCTAGCAGGAAAACAACATCGTG 60.668 47.826 10.63 0.00 35.22 4.35
1941 1966 2.949177 TGCGGCATATAGGGTTTGAT 57.051 45.000 0.00 0.00 0.00 2.57
1969 1994 6.992715 GCCCTCATATTAGACTACAACATTGT 59.007 38.462 2.32 2.32 44.86 2.71
2035 2060 3.454858 TCAGGAGGGAGCAAAAGTATCT 58.545 45.455 0.00 0.00 0.00 1.98
2040 2065 1.745653 GGGAGCAAAAGTATCTGTGCC 59.254 52.381 0.00 0.00 37.73 5.01
2098 2123 8.084985 TGTTATCTGGGTGTATATTGAGTTGA 57.915 34.615 0.00 0.00 0.00 3.18
2188 2541 8.859236 ATATAGCATTGTGACTGCATTTATCT 57.141 30.769 0.00 0.00 42.15 1.98
2190 2543 6.615264 AGCATTGTGACTGCATTTATCTAG 57.385 37.500 0.00 0.00 42.15 2.43
3170 3528 8.038492 AGCTCTAAGCATCAAAAGAAAAGTAG 57.962 34.615 1.29 0.00 45.56 2.57
3323 3681 4.767255 CTGGGCGAGGCACTGGAC 62.767 72.222 0.00 0.00 43.45 4.02
3341 3699 5.239744 ACTGGACAGAATAGCATAGTACTCG 59.760 44.000 6.29 0.00 0.00 4.18
3410 3768 5.001232 TCAGTTCTGGTGGCAATTAACTAC 58.999 41.667 0.00 0.00 0.00 2.73
3423 3873 7.871973 TGGCAATTAACTACGTAGTTCTGTTAA 59.128 33.333 37.09 26.92 44.77 2.01
3435 3887 4.894784 AGTTCTGTTAATTCGCCTCAAGA 58.105 39.130 0.00 0.00 0.00 3.02
3487 3939 3.433615 CCAGAATCTTGAGAAACGGACAC 59.566 47.826 0.00 0.00 0.00 3.67
3580 4041 6.656632 TGGCAAATTTCTTGTACCATTGTA 57.343 33.333 0.00 0.00 0.00 2.41
3624 4085 6.607019 TGGAAAACATACTTATATGGTCCCC 58.393 40.000 9.58 4.74 37.78 4.81
3756 4260 2.822697 ACTAGAAGTTCCTCCCACTCC 58.177 52.381 0.00 0.00 0.00 3.85
3960 4464 6.804534 TGTTATGTTTGCAGTTTTTCTTCG 57.195 33.333 0.00 0.00 0.00 3.79
3986 4490 0.107606 TATTGGTTATGCGCACCGGT 60.108 50.000 14.90 0.00 37.07 5.28
4254 5756 2.554564 GGGAAACCGGAAGAGGATGTTT 60.555 50.000 9.46 0.00 43.64 2.83
4256 5758 3.190744 GGAAACCGGAAGAGGATGTTTTC 59.809 47.826 9.46 3.13 34.73 2.29
4297 5801 3.701664 AGAATCAAACACCCCTCCAATC 58.298 45.455 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.410439 GTCAATAGTCAAAGGCGGTCTTAAA 59.590 40.000 0.00 0.00 34.78 1.52
5 6 3.244422 TGTCAATAGTCAAAGGCGGTCTT 60.244 43.478 0.00 0.00 37.28 3.01
6 7 2.301870 TGTCAATAGTCAAAGGCGGTCT 59.698 45.455 0.00 0.00 0.00 3.85
7 8 2.695359 TGTCAATAGTCAAAGGCGGTC 58.305 47.619 0.00 0.00 0.00 4.79
8 9 2.851263 TGTCAATAGTCAAAGGCGGT 57.149 45.000 0.00 0.00 0.00 5.68
9 10 3.334691 TCTTGTCAATAGTCAAAGGCGG 58.665 45.455 0.00 0.00 0.00 6.13
10 11 5.551760 AATCTTGTCAATAGTCAAAGGCG 57.448 39.130 0.00 0.00 0.00 5.52
23 24 9.045223 GCATGTCATGTACTATTAATCTTGTCA 57.955 33.333 14.26 0.00 0.00 3.58
24 25 9.045223 TGCATGTCATGTACTATTAATCTTGTC 57.955 33.333 14.26 0.00 0.00 3.18
25 26 8.962884 TGCATGTCATGTACTATTAATCTTGT 57.037 30.769 14.26 0.00 0.00 3.16
32 33 9.995003 TCACATTATGCATGTCATGTACTATTA 57.005 29.630 10.16 0.00 43.17 0.98
33 34 8.907222 TCACATTATGCATGTCATGTACTATT 57.093 30.769 10.16 0.00 43.17 1.73
34 35 8.907222 TTCACATTATGCATGTCATGTACTAT 57.093 30.769 10.16 4.57 43.17 2.12
35 36 8.729805 TTTCACATTATGCATGTCATGTACTA 57.270 30.769 10.16 2.43 43.17 1.82
36 37 7.628769 TTTCACATTATGCATGTCATGTACT 57.371 32.000 10.16 3.51 43.17 2.73
37 38 8.861033 ATTTTCACATTATGCATGTCATGTAC 57.139 30.769 10.16 0.00 43.17 2.90
63 64 9.679661 TGTGTGAAAGGAGCTTAAAATGATATA 57.320 29.630 0.00 0.00 0.00 0.86
64 65 8.462016 GTGTGTGAAAGGAGCTTAAAATGATAT 58.538 33.333 0.00 0.00 0.00 1.63
65 66 7.360861 CGTGTGTGAAAGGAGCTTAAAATGATA 60.361 37.037 0.00 0.00 0.00 2.15
66 67 6.568462 CGTGTGTGAAAGGAGCTTAAAATGAT 60.568 38.462 0.00 0.00 0.00 2.45
67 68 5.277779 CGTGTGTGAAAGGAGCTTAAAATGA 60.278 40.000 0.00 0.00 0.00 2.57
68 69 4.911610 CGTGTGTGAAAGGAGCTTAAAATG 59.088 41.667 0.00 0.00 0.00 2.32
69 70 4.819630 TCGTGTGTGAAAGGAGCTTAAAAT 59.180 37.500 0.00 0.00 0.00 1.82
70 71 4.193090 TCGTGTGTGAAAGGAGCTTAAAA 58.807 39.130 0.00 0.00 0.00 1.52
71 72 3.799366 TCGTGTGTGAAAGGAGCTTAAA 58.201 40.909 0.00 0.00 0.00 1.52
72 73 3.462483 TCGTGTGTGAAAGGAGCTTAA 57.538 42.857 0.00 0.00 0.00 1.85
73 74 3.462483 TTCGTGTGTGAAAGGAGCTTA 57.538 42.857 0.00 0.00 0.00 3.09
74 75 2.325583 TTCGTGTGTGAAAGGAGCTT 57.674 45.000 0.00 0.00 0.00 3.74
75 76 2.550830 ATTCGTGTGTGAAAGGAGCT 57.449 45.000 0.00 0.00 0.00 4.09
76 77 3.626028 AAATTCGTGTGTGAAAGGAGC 57.374 42.857 0.00 0.00 0.00 4.70
77 78 5.137403 CGTTAAATTCGTGTGTGAAAGGAG 58.863 41.667 0.00 0.00 0.00 3.69
78 79 4.024725 CCGTTAAATTCGTGTGTGAAAGGA 60.025 41.667 0.00 0.00 0.00 3.36
79 80 4.215965 CCGTTAAATTCGTGTGTGAAAGG 58.784 43.478 0.00 0.00 0.00 3.11
80 81 4.668837 CACCGTTAAATTCGTGTGTGAAAG 59.331 41.667 0.00 0.00 0.00 2.62
81 82 4.094590 ACACCGTTAAATTCGTGTGTGAAA 59.905 37.500 9.71 0.00 39.31 2.69
82 83 3.622163 ACACCGTTAAATTCGTGTGTGAA 59.378 39.130 9.71 0.00 39.31 3.18
83 84 3.196463 ACACCGTTAAATTCGTGTGTGA 58.804 40.909 9.71 0.00 39.31 3.58
84 85 3.284914 CACACCGTTAAATTCGTGTGTG 58.715 45.455 17.05 17.05 44.50 3.82
85 86 2.286536 GCACACCGTTAAATTCGTGTGT 60.287 45.455 17.54 12.66 40.37 3.72
86 87 2.032377 AGCACACCGTTAAATTCGTGTG 60.032 45.455 13.39 13.39 40.02 3.82
87 88 2.215196 AGCACACCGTTAAATTCGTGT 58.785 42.857 0.00 0.00 0.00 4.49
88 89 2.961522 AGCACACCGTTAAATTCGTG 57.038 45.000 0.00 0.00 0.00 4.35
89 90 3.065648 ACAAAGCACACCGTTAAATTCGT 59.934 39.130 0.00 0.00 0.00 3.85
90 91 3.420576 CACAAAGCACACCGTTAAATTCG 59.579 43.478 0.00 0.00 0.00 3.34
91 92 4.356289 ACACAAAGCACACCGTTAAATTC 58.644 39.130 0.00 0.00 0.00 2.17
92 93 4.379339 ACACAAAGCACACCGTTAAATT 57.621 36.364 0.00 0.00 0.00 1.82
93 94 5.066764 ACTTACACAAAGCACACCGTTAAAT 59.933 36.000 0.00 0.00 38.93 1.40
94 95 4.395542 ACTTACACAAAGCACACCGTTAAA 59.604 37.500 0.00 0.00 38.93 1.52
95 96 3.940221 ACTTACACAAAGCACACCGTTAA 59.060 39.130 0.00 0.00 38.93 2.01
96 97 3.533547 ACTTACACAAAGCACACCGTTA 58.466 40.909 0.00 0.00 38.93 3.18
97 98 2.361789 ACTTACACAAAGCACACCGTT 58.638 42.857 0.00 0.00 38.93 4.44
98 99 2.032680 ACTTACACAAAGCACACCGT 57.967 45.000 0.00 0.00 38.93 4.83
99 100 2.715268 CAACTTACACAAAGCACACCG 58.285 47.619 0.00 0.00 38.93 4.94
100 101 2.159310 TGCAACTTACACAAAGCACACC 60.159 45.455 0.00 0.00 38.93 4.16
101 102 3.143807 TGCAACTTACACAAAGCACAC 57.856 42.857 0.00 0.00 38.93 3.82
102 103 3.130164 ACATGCAACTTACACAAAGCACA 59.870 39.130 0.00 0.00 38.93 4.57
103 104 3.705604 ACATGCAACTTACACAAAGCAC 58.294 40.909 0.00 0.00 38.93 4.40
104 105 3.379688 TGACATGCAACTTACACAAAGCA 59.620 39.130 0.00 0.00 38.93 3.91
105 106 3.963665 TGACATGCAACTTACACAAAGC 58.036 40.909 0.00 0.00 38.93 3.51
114 115 9.293404 AGAGCAATAATATATGACATGCAACTT 57.707 29.630 10.78 0.00 34.89 2.66
115 116 8.859236 AGAGCAATAATATATGACATGCAACT 57.141 30.769 10.78 7.52 34.89 3.16
130 131 8.806146 ACTTTGACCAAACATTAGAGCAATAAT 58.194 29.630 0.00 0.00 0.00 1.28
131 132 8.177119 ACTTTGACCAAACATTAGAGCAATAA 57.823 30.769 0.00 0.00 0.00 1.40
132 133 7.759489 ACTTTGACCAAACATTAGAGCAATA 57.241 32.000 0.00 0.00 0.00 1.90
133 134 6.655078 ACTTTGACCAAACATTAGAGCAAT 57.345 33.333 0.00 0.00 0.00 3.56
134 135 6.463995 AACTTTGACCAAACATTAGAGCAA 57.536 33.333 0.00 0.00 0.00 3.91
135 136 6.770785 ACTAACTTTGACCAAACATTAGAGCA 59.229 34.615 18.85 0.00 32.99 4.26
136 137 7.173390 AGACTAACTTTGACCAAACATTAGAGC 59.827 37.037 18.85 13.46 32.99 4.09
137 138 8.608844 AGACTAACTTTGACCAAACATTAGAG 57.391 34.615 18.85 2.90 32.99 2.43
138 139 7.384115 CGAGACTAACTTTGACCAAACATTAGA 59.616 37.037 18.85 0.00 32.99 2.10
139 140 7.384115 TCGAGACTAACTTTGACCAAACATTAG 59.616 37.037 14.27 14.27 33.90 1.73
140 141 7.211573 TCGAGACTAACTTTGACCAAACATTA 58.788 34.615 0.00 0.00 0.00 1.90
141 142 6.053005 TCGAGACTAACTTTGACCAAACATT 58.947 36.000 0.00 0.00 0.00 2.71
142 143 5.607477 TCGAGACTAACTTTGACCAAACAT 58.393 37.500 0.00 0.00 0.00 2.71
143 144 5.013568 TCGAGACTAACTTTGACCAAACA 57.986 39.130 0.00 0.00 0.00 2.83
144 145 5.978934 TTCGAGACTAACTTTGACCAAAC 57.021 39.130 0.00 0.00 0.00 2.93
145 146 6.988622 TTTTCGAGACTAACTTTGACCAAA 57.011 33.333 0.00 0.00 0.00 3.28
146 147 6.455913 CGTTTTTCGAGACTAACTTTGACCAA 60.456 38.462 0.00 0.00 42.86 3.67
147 148 5.005971 CGTTTTTCGAGACTAACTTTGACCA 59.994 40.000 0.00 0.00 42.86 4.02
148 149 5.429615 CGTTTTTCGAGACTAACTTTGACC 58.570 41.667 0.00 0.00 42.86 4.02
149 150 4.896799 GCGTTTTTCGAGACTAACTTTGAC 59.103 41.667 0.00 0.00 42.86 3.18
150 151 4.567558 TGCGTTTTTCGAGACTAACTTTGA 59.432 37.500 0.00 0.00 42.86 2.69
151 152 4.828704 TGCGTTTTTCGAGACTAACTTTG 58.171 39.130 0.00 0.00 42.86 2.77
152 153 5.668558 ATGCGTTTTTCGAGACTAACTTT 57.331 34.783 0.00 0.00 42.86 2.66
153 154 5.668558 AATGCGTTTTTCGAGACTAACTT 57.331 34.783 0.00 0.00 42.86 2.66
154 155 5.347907 CCTAATGCGTTTTTCGAGACTAACT 59.652 40.000 0.00 0.00 42.86 2.24
155 156 5.548250 CCTAATGCGTTTTTCGAGACTAAC 58.452 41.667 0.00 0.00 42.86 2.34
156 157 4.092383 GCCTAATGCGTTTTTCGAGACTAA 59.908 41.667 0.00 0.00 42.86 2.24
157 158 3.615496 GCCTAATGCGTTTTTCGAGACTA 59.385 43.478 0.00 0.00 42.86 2.59
158 159 2.415512 GCCTAATGCGTTTTTCGAGACT 59.584 45.455 0.00 0.00 42.86 3.24
159 160 2.475685 GGCCTAATGCGTTTTTCGAGAC 60.476 50.000 0.00 0.00 42.61 3.36
160 161 1.735571 GGCCTAATGCGTTTTTCGAGA 59.264 47.619 0.00 0.00 42.61 4.04
161 162 1.202143 GGGCCTAATGCGTTTTTCGAG 60.202 52.381 0.84 0.00 42.61 4.04
162 163 0.806241 GGGCCTAATGCGTTTTTCGA 59.194 50.000 0.84 0.00 42.61 3.71
163 164 0.808755 AGGGCCTAATGCGTTTTTCG 59.191 50.000 2.82 0.00 42.61 3.46
164 165 5.959618 ATATAGGGCCTAATGCGTTTTTC 57.040 39.130 18.91 0.00 42.61 2.29
165 166 6.775708 TCTATATAGGGCCTAATGCGTTTTT 58.224 36.000 18.91 0.00 42.61 1.94
166 167 6.368779 TCTATATAGGGCCTAATGCGTTTT 57.631 37.500 18.91 0.30 42.61 2.43
167 168 6.349300 CATCTATATAGGGCCTAATGCGTTT 58.651 40.000 18.91 1.12 42.61 3.60
168 169 5.163301 CCATCTATATAGGGCCTAATGCGTT 60.163 44.000 18.91 1.94 42.61 4.84
169 170 4.345257 CCATCTATATAGGGCCTAATGCGT 59.655 45.833 18.91 2.76 42.61 5.24
170 171 4.588951 TCCATCTATATAGGGCCTAATGCG 59.411 45.833 18.91 10.04 42.61 4.73
171 172 6.465035 CCTTCCATCTATATAGGGCCTAATGC 60.465 46.154 18.91 0.00 40.16 3.56
172 173 6.846505 TCCTTCCATCTATATAGGGCCTAATG 59.153 42.308 18.91 15.42 0.00 1.90
173 174 7.009960 TCCTTCCATCTATATAGGGCCTAAT 57.990 40.000 18.91 14.19 0.00 1.73
174 175 6.432190 TCCTTCCATCTATATAGGGCCTAA 57.568 41.667 18.91 7.61 0.00 2.69
175 176 5.103043 CCTCCTTCCATCTATATAGGGCCTA 60.103 48.000 17.16 17.16 0.00 3.93
176 177 4.327332 CCTCCTTCCATCTATATAGGGCCT 60.327 50.000 12.58 12.58 0.00 5.19
177 178 3.970640 CCTCCTTCCATCTATATAGGGCC 59.029 52.174 9.89 0.00 0.00 5.80
178 179 3.970640 CCCTCCTTCCATCTATATAGGGC 59.029 52.174 9.89 0.00 36.30 5.19
179 180 5.042979 ACTCCCTCCTTCCATCTATATAGGG 60.043 48.000 9.89 4.49 43.23 3.53
180 181 6.098716 ACTCCCTCCTTCCATCTATATAGG 57.901 45.833 9.89 0.00 0.00 2.57
181 182 6.775629 GCTACTCCCTCCTTCCATCTATATAG 59.224 46.154 3.10 3.10 0.00 1.31
182 183 6.452000 AGCTACTCCCTCCTTCCATCTATATA 59.548 42.308 0.00 0.00 0.00 0.86
183 184 5.257577 AGCTACTCCCTCCTTCCATCTATAT 59.742 44.000 0.00 0.00 0.00 0.86
184 185 4.608473 AGCTACTCCCTCCTTCCATCTATA 59.392 45.833 0.00 0.00 0.00 1.31
185 186 3.404425 AGCTACTCCCTCCTTCCATCTAT 59.596 47.826 0.00 0.00 0.00 1.98
186 187 2.792370 AGCTACTCCCTCCTTCCATCTA 59.208 50.000 0.00 0.00 0.00 1.98
187 188 1.578215 AGCTACTCCCTCCTTCCATCT 59.422 52.381 0.00 0.00 0.00 2.90
188 189 1.691434 CAGCTACTCCCTCCTTCCATC 59.309 57.143 0.00 0.00 0.00 3.51
189 190 1.694048 CCAGCTACTCCCTCCTTCCAT 60.694 57.143 0.00 0.00 0.00 3.41
190 191 0.325671 CCAGCTACTCCCTCCTTCCA 60.326 60.000 0.00 0.00 0.00 3.53
191 192 1.691195 GCCAGCTACTCCCTCCTTCC 61.691 65.000 0.00 0.00 0.00 3.46
192 193 0.689412 AGCCAGCTACTCCCTCCTTC 60.689 60.000 0.00 0.00 0.00 3.46
193 194 0.252927 AAGCCAGCTACTCCCTCCTT 60.253 55.000 0.00 0.00 0.00 3.36
194 195 0.689412 GAAGCCAGCTACTCCCTCCT 60.689 60.000 0.00 0.00 0.00 3.69
195 196 1.691195 GGAAGCCAGCTACTCCCTCC 61.691 65.000 0.00 0.00 0.00 4.30
196 197 1.691195 GGGAAGCCAGCTACTCCCTC 61.691 65.000 18.45 0.93 39.11 4.30
197 198 1.690985 GGGAAGCCAGCTACTCCCT 60.691 63.158 18.45 0.00 39.11 4.20
198 199 1.690985 AGGGAAGCCAGCTACTCCC 60.691 63.158 18.17 18.17 41.32 4.30
199 200 1.524482 CAGGGAAGCCAGCTACTCC 59.476 63.158 2.28 2.28 0.00 3.85
200 201 1.153269 GCAGGGAAGCCAGCTACTC 60.153 63.158 0.00 0.00 0.00 2.59
201 202 1.204113 AAGCAGGGAAGCCAGCTACT 61.204 55.000 0.00 0.00 35.84 2.57
202 203 0.322906 AAAGCAGGGAAGCCAGCTAC 60.323 55.000 0.00 0.00 35.84 3.58
290 291 5.422970 ACATCAACATCCATAAAGCAACCAT 59.577 36.000 0.00 0.00 0.00 3.55
626 629 3.243535 GCAGTATAAAAAGGAGGCATGGC 60.244 47.826 12.14 12.14 0.00 4.40
732 745 6.343226 CTTCTACAGCAAGCTATTCTCAAC 57.657 41.667 0.00 0.00 0.00 3.18
893 912 3.145422 GAGCTCGCTCTACCTGGCC 62.145 68.421 11.49 0.00 39.80 5.36
1186 1205 1.291877 CCACTCTTCGTTTCAGGCCG 61.292 60.000 0.00 0.00 0.00 6.13
1215 1234 4.524328 CCATTAGAAAAGCCTTCAGTTGGT 59.476 41.667 0.00 0.00 0.00 3.67
1345 1364 4.361420 TCAAAACATGCCGCATATCATTG 58.639 39.130 5.31 9.26 0.00 2.82
1346 1365 4.652421 TCAAAACATGCCGCATATCATT 57.348 36.364 5.31 0.00 0.00 2.57
1454 1478 7.989826 AGTGTTGTCCTAAAAGATAATCATGC 58.010 34.615 0.00 0.00 0.00 4.06
1467 1492 8.434392 ACCAAAGAATTACTAGTGTTGTCCTAA 58.566 33.333 5.39 0.00 0.00 2.69
1500 1525 3.199677 CAACGTTGTCCCAACTAGTTCA 58.800 45.455 20.21 0.00 0.00 3.18
1504 1529 2.940410 ACAACAACGTTGTCCCAACTAG 59.060 45.455 32.36 16.70 41.31 2.57
1507 1532 1.469308 TGACAACAACGTTGTCCCAAC 59.531 47.619 32.36 20.91 46.01 3.77
1528 1553 6.633500 GCAATGGCATATTTGGACTAGTAA 57.367 37.500 0.00 0.00 40.72 2.24
1642 1667 3.114643 TGGACCCAGATCACAGTGATA 57.885 47.619 16.40 0.00 37.20 2.15
1658 1683 5.480422 ACCCTTTTCTATTGGTTTCATGGAC 59.520 40.000 0.00 0.00 0.00 4.02
1695 1720 1.266718 CACAACGTGCCAGCATAAACT 59.733 47.619 0.00 0.00 0.00 2.66
1698 1723 0.536233 ACCACAACGTGCCAGCATAA 60.536 50.000 0.00 0.00 31.34 1.90
1836 1861 5.277828 GCGTTTGATGGTTTCCCTATATCAC 60.278 44.000 0.00 0.00 0.00 3.06
1838 1863 5.049405 CAGCGTTTGATGGTTTCCCTATATC 60.049 44.000 0.00 0.00 0.00 1.63
1855 1880 1.474077 GGAGGCATTGATTCAGCGTTT 59.526 47.619 0.00 0.00 0.00 3.60
1859 1884 2.048444 TCTGGAGGCATTGATTCAGC 57.952 50.000 0.00 0.00 0.00 4.26
1941 1966 5.897250 TGTTGTAGTCTAATATGAGGGCTGA 59.103 40.000 0.00 0.00 0.00 4.26
1969 1994 1.423541 ACCAACTACTGTGGGCATTGA 59.576 47.619 0.00 0.00 41.04 2.57
2167 2197 6.118170 ACTAGATAAATGCAGTCACAATGCT 58.882 36.000 0.00 0.00 44.17 3.79
2188 2541 6.414732 CATGTCCAGTGAAAAGGGATAACTA 58.585 40.000 0.00 0.00 32.43 2.24
2190 2543 4.399303 CCATGTCCAGTGAAAAGGGATAAC 59.601 45.833 0.00 0.00 32.43 1.89
2195 2548 2.292828 ACCATGTCCAGTGAAAAGGG 57.707 50.000 0.00 0.00 0.00 3.95
2312 2665 0.481567 TATACCTCGGGGGAGGAGTG 59.518 60.000 16.59 0.00 45.00 3.51
2673 3028 1.188863 TGCTGCAGACTGAGAGCATA 58.811 50.000 20.43 4.75 36.54 3.14
3170 3528 2.119495 TGCCTAATCTGGGAACTCTCC 58.881 52.381 0.00 0.00 41.59 3.71
3323 3681 5.690997 TGACCGAGTACTATGCTATTCTG 57.309 43.478 0.00 0.00 0.00 3.02
3341 3699 1.808945 CTGCTCACCTGTTTGATGACC 59.191 52.381 0.00 0.00 0.00 4.02
3410 3768 4.171005 TGAGGCGAATTAACAGAACTACG 58.829 43.478 0.00 0.00 0.00 3.51
3435 3887 2.501316 GCCAAAAGAACTGGGCCATATT 59.499 45.455 6.72 4.46 40.55 1.28
3537 3998 4.081309 GCCATCACAGTACAAGTTAGGGTA 60.081 45.833 0.00 0.00 0.00 3.69
3580 4041 4.225042 TCCATGCTGTATTCACTACAACCT 59.775 41.667 0.00 0.00 39.82 3.50
3756 4260 4.013267 AGTTCCCAACTCTGAACATGAG 57.987 45.455 0.00 0.00 42.57 2.90
3780 4284 0.396435 AAACCGATGACAGCACTCCA 59.604 50.000 0.00 0.00 0.00 3.86
3781 4285 1.079503 GAAACCGATGACAGCACTCC 58.920 55.000 0.00 0.00 0.00 3.85
3960 4464 4.451557 GTGCGCATAACCAATAATACGAC 58.548 43.478 15.91 0.00 0.00 4.34
4170 4674 2.159170 GGATACGAAGCTGCTGAAGACT 60.159 50.000 1.35 0.00 0.00 3.24
4254 5756 3.831323 TCAGATTTTTGGTGCCTGAGAA 58.169 40.909 0.00 0.00 31.15 2.87
4256 5758 3.822735 TCTTCAGATTTTTGGTGCCTGAG 59.177 43.478 0.00 0.00 35.60 3.35
4297 5801 8.113173 AGAAGTGGTAAGTAGAGTTAACTGAG 57.887 38.462 14.14 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.