Multiple sequence alignment - TraesCS3B01G207700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G207700 chr3B 100.000 3511 0 0 1 3511 243252564 243249054 0.000000e+00 6484.0
1 TraesCS3B01G207700 chr3B 87.259 259 31 2 2013 2269 530257698 530257440 9.530000e-76 294.0
2 TraesCS3B01G207700 chr3B 100.000 31 0 0 1716 1746 363323969 363323999 1.360000e-04 58.4
3 TraesCS3B01G207700 chr3D 96.331 1717 35 9 6 1720 168291943 168290253 0.000000e+00 2796.0
4 TraesCS3B01G207700 chr3D 96.712 517 13 1 2305 2821 168289646 168289134 0.000000e+00 857.0
5 TraesCS3B01G207700 chr3D 94.785 326 14 3 2976 3298 168289041 168288716 4.040000e-139 505.0
6 TraesCS3B01G207700 chr3D 93.506 308 10 2 3106 3412 168288714 168288416 1.920000e-122 449.0
7 TraesCS3B01G207700 chr3D 92.793 222 11 2 1798 2015 168290211 168289991 2.030000e-82 316.0
8 TraesCS3B01G207700 chr3D 100.000 77 0 0 2806 2882 168289116 168289040 3.650000e-30 143.0
9 TraesCS3B01G207700 chr3D 100.000 46 0 0 2258 2303 168289993 168289948 6.240000e-13 86.1
10 TraesCS3B01G207700 chr3D 94.118 51 3 0 2305 2355 168289703 168289653 1.040000e-10 78.7
11 TraesCS3B01G207700 chr3A 95.018 1646 43 13 76 1720 199687967 199689574 0.000000e+00 2549.0
12 TraesCS3B01G207700 chr3A 96.355 631 12 4 2258 2882 199689801 199690426 0.000000e+00 1027.0
13 TraesCS3B01G207700 chr3A 94.725 436 20 3 2976 3408 199690425 199690860 0.000000e+00 675.0
14 TraesCS3B01G207700 chr3A 90.980 255 20 3 2014 2266 635388083 635388336 1.210000e-89 340.0
15 TraesCS3B01G207700 chr3A 92.766 235 12 2 1785 2015 199689570 199689803 5.620000e-88 335.0
16 TraesCS3B01G207700 chr3A 89.669 242 22 3 2010 2250 603020806 603021045 4.400000e-79 305.0
17 TraesCS3B01G207700 chr3A 95.050 101 5 0 3411 3511 199691736 199691836 3.630000e-35 159.0
18 TraesCS3B01G207700 chr3A 93.182 44 3 0 1747 1790 59430022 59430065 8.130000e-07 65.8
19 TraesCS3B01G207700 chr5A 93.359 256 14 3 2014 2267 51547573 51547319 3.310000e-100 375.0
20 TraesCS3B01G207700 chr5A 90.000 250 22 3 2014 2262 539091597 539091350 1.570000e-83 320.0
21 TraesCS3B01G207700 chr5A 100.000 29 0 0 1717 1745 179084041 179084013 2.000000e-03 54.7
22 TraesCS3B01G207700 chr5B 93.200 250 15 2 2014 2262 557898283 557898035 1.990000e-97 366.0
23 TraesCS3B01G207700 chr5B 97.938 97 2 0 2881 2977 655149258 655149354 6.030000e-38 169.0
24 TraesCS3B01G207700 chr2A 87.218 266 30 4 2012 2274 70673565 70673301 2.050000e-77 300.0
25 TraesCS3B01G207700 chr2A 89.431 123 9 4 2877 2996 13287302 13287423 6.070000e-33 152.0
26 TraesCS3B01G207700 chr2A 94.444 36 1 1 1711 1745 255642095 255642060 2.000000e-03 54.7
27 TraesCS3B01G207700 chr5D 86.975 238 23 8 2027 2260 111788514 111788747 9.670000e-66 261.0
28 TraesCS3B01G207700 chr6B 85.484 248 33 2 2014 2260 507405642 507405887 4.500000e-64 255.0
29 TraesCS3B01G207700 chr6B 94.444 36 1 1 1711 1745 356113671 356113706 2.000000e-03 54.7
30 TraesCS3B01G207700 chr6B 100.000 28 0 0 1719 1746 518602661 518602688 6.000000e-03 52.8
31 TraesCS3B01G207700 chr7A 100.000 97 0 0 2881 2977 732808756 732808660 2.780000e-41 180.0
32 TraesCS3B01G207700 chr7A 92.727 110 6 2 2872 2980 222500865 222500973 1.300000e-34 158.0
33 TraesCS3B01G207700 chr7A 89.167 120 11 2 2864 2982 689376704 689376822 7.850000e-32 148.0
34 TraesCS3B01G207700 chr1A 100.000 97 0 0 2881 2977 109982832 109982928 2.780000e-41 180.0
35 TraesCS3B01G207700 chr1A 96.875 32 1 0 1716 1747 591603799 591603830 2.000000e-03 54.7
36 TraesCS3B01G207700 chr1A 100.000 28 0 0 1718 1745 104852476 104852449 6.000000e-03 52.8
37 TraesCS3B01G207700 chr7B 94.286 105 6 0 2881 2985 706811142 706811038 1.010000e-35 161.0
38 TraesCS3B01G207700 chr6A 91.150 113 10 0 2880 2992 611411195 611411307 1.690000e-33 154.0
39 TraesCS3B01G207700 chrUn 91.150 113 8 2 2871 2982 305213122 305213233 6.070000e-33 152.0
40 TraesCS3B01G207700 chrUn 100.000 29 0 0 1764 1792 73961833 73961861 2.000000e-03 54.7
41 TraesCS3B01G207700 chr1B 91.304 46 4 0 1719 1764 465243963 465243918 2.930000e-06 63.9
42 TraesCS3B01G207700 chr2B 100.000 32 0 0 1716 1747 57321723 57321754 3.780000e-05 60.2
43 TraesCS3B01G207700 chr2B 100.000 32 0 0 1716 1747 724110169 724110138 3.780000e-05 60.2
44 TraesCS3B01G207700 chr6D 94.444 36 1 1 1711 1745 347232839 347232804 2.000000e-03 54.7
45 TraesCS3B01G207700 chr1D 100.000 29 0 0 1719 1747 345741057 345741085 2.000000e-03 54.7
46 TraesCS3B01G207700 chr2D 90.000 40 4 0 1706 1745 392091128 392091167 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G207700 chr3B 243249054 243252564 3510 True 6484.00 6484 100.000000 1 3511 1 chr3B.!!$R1 3510
1 TraesCS3B01G207700 chr3D 168288416 168291943 3527 True 653.85 2796 96.030625 6 3412 8 chr3D.!!$R1 3406
2 TraesCS3B01G207700 chr3A 199687967 199691836 3869 False 949.00 2549 94.782800 76 3511 5 chr3A.!!$F4 3435

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
702 705 0.786435 AGGGCCCTGAAAAACTCCAT 59.214 50.000 28.05 0.0 0.00 3.41 F
1678 1681 2.102925 TCCCGACTAGAACACGGTTTTT 59.897 45.455 16.01 0.0 44.34 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1761 1764 0.168128 CCGTCCGAAAATGCTTGTCC 59.832 55.0 0.00 0.00 0.00 4.02 R
3476 4921 0.933097 CGTCATGAGGCCTTTCATCG 59.067 55.0 6.77 6.45 35.67 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
577 580 4.320421 CGTCATTGCACTCCAAGAATGAAA 60.320 41.667 0.00 0.00 36.76 2.69
702 705 0.786435 AGGGCCCTGAAAAACTCCAT 59.214 50.000 28.05 0.00 0.00 3.41
780 783 3.197333 CACTCCACTGAGATTCACATCCT 59.803 47.826 0.00 0.00 41.42 3.24
1377 1380 6.194285 AGATTCCCTTTTAGCTAGATTCCC 57.806 41.667 0.00 0.00 0.00 3.97
1378 1381 5.914124 AGATTCCCTTTTAGCTAGATTCCCT 59.086 40.000 0.00 0.00 0.00 4.20
1379 1382 6.391352 AGATTCCCTTTTAGCTAGATTCCCTT 59.609 38.462 0.00 0.00 0.00 3.95
1380 1383 6.402981 TTCCCTTTTAGCTAGATTCCCTTT 57.597 37.500 0.00 0.00 0.00 3.11
1381 1384 6.402981 TCCCTTTTAGCTAGATTCCCTTTT 57.597 37.500 0.00 0.00 0.00 2.27
1382 1385 7.519347 TCCCTTTTAGCTAGATTCCCTTTTA 57.481 36.000 0.00 0.00 0.00 1.52
1383 1386 7.574607 TCCCTTTTAGCTAGATTCCCTTTTAG 58.425 38.462 0.00 0.00 0.00 1.85
1384 1387 6.263392 CCCTTTTAGCTAGATTCCCTTTTAGC 59.737 42.308 0.00 0.00 38.98 3.09
1386 1389 8.211629 CCTTTTAGCTAGATTCCCTTTTAGCTA 58.788 37.037 7.73 7.73 45.05 3.32
1387 1390 9.267084 CTTTTAGCTAGATTCCCTTTTAGCTAG 57.733 37.037 10.76 0.00 46.48 3.42
1608 1611 4.038042 TCTGGAGAGCACATAAATAGGACG 59.962 45.833 0.00 0.00 0.00 4.79
1678 1681 2.102925 TCCCGACTAGAACACGGTTTTT 59.897 45.455 16.01 0.00 44.34 1.94
1707 1710 6.330004 TGCAGCAAACTCTGAATTATTTCA 57.670 33.333 0.00 0.47 39.54 2.69
1732 1735 9.973450 CAGATATATAAATACTTCCTCCATCCG 57.027 37.037 0.00 0.00 0.00 4.18
1733 1736 9.148879 AGATATATAAATACTTCCTCCATCCGG 57.851 37.037 0.00 0.00 0.00 5.14
1734 1737 9.144298 GATATATAAATACTTCCTCCATCCGGA 57.856 37.037 6.61 6.61 39.79 5.14
1735 1738 7.808279 ATATAAATACTTCCTCCATCCGGAA 57.192 36.000 9.01 0.00 42.21 4.30
1736 1739 4.855298 AAATACTTCCTCCATCCGGAAA 57.145 40.909 9.01 0.00 42.21 3.13
1737 1740 5.388599 AAATACTTCCTCCATCCGGAAAT 57.611 39.130 9.01 0.00 42.21 2.17
1738 1741 6.509523 AAATACTTCCTCCATCCGGAAATA 57.490 37.500 9.01 0.00 42.21 1.40
1739 1742 3.840124 ACTTCCTCCATCCGGAAATAC 57.160 47.619 9.01 0.00 42.21 1.89
1740 1743 3.385115 ACTTCCTCCATCCGGAAATACT 58.615 45.455 9.01 0.00 42.21 2.12
1741 1744 3.780850 ACTTCCTCCATCCGGAAATACTT 59.219 43.478 9.01 0.00 42.21 2.24
1742 1745 3.838244 TCCTCCATCCGGAAATACTTG 57.162 47.619 9.01 0.00 42.21 3.16
1743 1746 3.112263 TCCTCCATCCGGAAATACTTGT 58.888 45.455 9.01 0.00 42.21 3.16
1744 1747 3.134081 TCCTCCATCCGGAAATACTTGTC 59.866 47.826 9.01 0.00 42.21 3.18
1745 1748 3.118408 CCTCCATCCGGAAATACTTGTCA 60.118 47.826 9.01 0.00 42.21 3.58
1746 1749 4.444876 CCTCCATCCGGAAATACTTGTCAT 60.445 45.833 9.01 0.00 42.21 3.06
1747 1750 5.110814 TCCATCCGGAAATACTTGTCATT 57.889 39.130 9.01 0.00 38.83 2.57
1748 1751 5.505780 TCCATCCGGAAATACTTGTCATTT 58.494 37.500 9.01 0.00 38.83 2.32
1749 1752 5.949354 TCCATCCGGAAATACTTGTCATTTT 59.051 36.000 9.01 0.00 38.83 1.82
1750 1753 7.113437 TCCATCCGGAAATACTTGTCATTTTA 58.887 34.615 9.01 0.00 38.83 1.52
1751 1754 7.777910 TCCATCCGGAAATACTTGTCATTTTAT 59.222 33.333 9.01 0.00 38.83 1.40
1752 1755 8.076178 CCATCCGGAAATACTTGTCATTTTATC 58.924 37.037 9.01 0.00 0.00 1.75
1753 1756 7.562454 TCCGGAAATACTTGTCATTTTATCC 57.438 36.000 0.00 0.00 0.00 2.59
1754 1757 7.113437 TCCGGAAATACTTGTCATTTTATCCA 58.887 34.615 0.00 0.00 0.00 3.41
1755 1758 7.777910 TCCGGAAATACTTGTCATTTTATCCAT 59.222 33.333 0.00 0.00 0.00 3.41
1756 1759 8.413229 CCGGAAATACTTGTCATTTTATCCATT 58.587 33.333 0.00 0.00 0.00 3.16
1757 1760 9.801873 CGGAAATACTTGTCATTTTATCCATTT 57.198 29.630 0.00 0.00 0.00 2.32
1763 1766 8.421249 ACTTGTCATTTTATCCATTTTGAGGA 57.579 30.769 0.00 0.00 39.97 3.71
1764 1767 8.306761 ACTTGTCATTTTATCCATTTTGAGGAC 58.693 33.333 0.00 0.00 38.13 3.85
1765 1768 7.773489 TGTCATTTTATCCATTTTGAGGACA 57.227 32.000 0.00 0.00 38.13 4.02
1766 1769 8.187913 TGTCATTTTATCCATTTTGAGGACAA 57.812 30.769 0.00 0.00 38.13 3.18
1767 1770 8.306038 TGTCATTTTATCCATTTTGAGGACAAG 58.694 33.333 0.00 0.00 38.13 3.16
1768 1771 7.276438 GTCATTTTATCCATTTTGAGGACAAGC 59.724 37.037 0.00 0.00 38.13 4.01
1769 1772 6.662865 TTTTATCCATTTTGAGGACAAGCA 57.337 33.333 0.00 0.00 38.13 3.91
1770 1773 6.855763 TTTATCCATTTTGAGGACAAGCAT 57.144 33.333 0.00 0.00 38.13 3.79
1771 1774 6.855763 TTATCCATTTTGAGGACAAGCATT 57.144 33.333 0.00 0.00 38.13 3.56
1772 1775 5.750352 ATCCATTTTGAGGACAAGCATTT 57.250 34.783 0.00 0.00 38.13 2.32
1773 1776 5.549742 TCCATTTTGAGGACAAGCATTTT 57.450 34.783 0.00 0.00 37.32 1.82
1774 1777 5.540911 TCCATTTTGAGGACAAGCATTTTC 58.459 37.500 0.00 0.00 37.32 2.29
1775 1778 4.386652 CCATTTTGAGGACAAGCATTTTCG 59.613 41.667 0.00 0.00 37.32 3.46
1776 1779 3.641437 TTTGAGGACAAGCATTTTCGG 57.359 42.857 0.00 0.00 37.32 4.30
1777 1780 2.559698 TGAGGACAAGCATTTTCGGA 57.440 45.000 0.00 0.00 0.00 4.55
1778 1781 2.151202 TGAGGACAAGCATTTTCGGAC 58.849 47.619 0.00 0.00 0.00 4.79
1779 1782 1.128692 GAGGACAAGCATTTTCGGACG 59.871 52.381 0.00 0.00 0.00 4.79
1780 1783 0.168128 GGACAAGCATTTTCGGACGG 59.832 55.000 0.00 0.00 0.00 4.79
1781 1784 1.153353 GACAAGCATTTTCGGACGGA 58.847 50.000 0.00 0.00 0.00 4.69
1782 1785 1.128692 GACAAGCATTTTCGGACGGAG 59.871 52.381 0.00 0.00 0.00 4.63
1783 1786 0.447801 CAAGCATTTTCGGACGGAGG 59.552 55.000 0.00 0.00 0.00 4.30
1786 1789 0.727398 GCATTTTCGGACGGAGGAAG 59.273 55.000 0.00 0.00 0.00 3.46
1805 1808 5.303078 AGGAAGTATATGACGAACTGCAGAT 59.697 40.000 23.35 9.01 0.00 2.90
1924 1964 1.531149 ACACTGCATGCGTCTTGTAAC 59.469 47.619 14.09 0.00 0.00 2.50
1958 1998 8.737168 TCAAATTAGCACTAGCATATCACTTT 57.263 30.769 0.00 0.00 45.49 2.66
1980 2020 4.673375 CCTGGCACCCTGCTGCTT 62.673 66.667 0.00 0.00 44.28 3.91
2015 2055 3.059868 CGCATATGGTCATCCGTTTGTAC 60.060 47.826 4.56 0.00 35.23 2.90
2016 2056 4.127171 GCATATGGTCATCCGTTTGTACT 58.873 43.478 4.56 0.00 35.23 2.73
2017 2057 4.211374 GCATATGGTCATCCGTTTGTACTC 59.789 45.833 4.56 0.00 35.23 2.59
2018 2058 2.754946 TGGTCATCCGTTTGTACTCC 57.245 50.000 0.00 0.00 36.30 3.85
2019 2059 1.276989 TGGTCATCCGTTTGTACTCCC 59.723 52.381 0.00 0.00 36.30 4.30
2020 2060 1.553704 GGTCATCCGTTTGTACTCCCT 59.446 52.381 0.00 0.00 0.00 4.20
2021 2061 2.418334 GGTCATCCGTTTGTACTCCCTC 60.418 54.545 0.00 0.00 0.00 4.30
2022 2062 1.829222 TCATCCGTTTGTACTCCCTCC 59.171 52.381 0.00 0.00 0.00 4.30
2023 2063 0.822164 ATCCGTTTGTACTCCCTCCG 59.178 55.000 0.00 0.00 0.00 4.63
2024 2064 0.540365 TCCGTTTGTACTCCCTCCGT 60.540 55.000 0.00 0.00 0.00 4.69
2025 2065 0.319405 CCGTTTGTACTCCCTCCGTT 59.681 55.000 0.00 0.00 0.00 4.44
2026 2066 1.670967 CCGTTTGTACTCCCTCCGTTC 60.671 57.143 0.00 0.00 0.00 3.95
2027 2067 1.271656 CGTTTGTACTCCCTCCGTTCT 59.728 52.381 0.00 0.00 0.00 3.01
2028 2068 2.670509 CGTTTGTACTCCCTCCGTTCTC 60.671 54.545 0.00 0.00 0.00 2.87
2029 2069 2.297698 TTGTACTCCCTCCGTTCTCA 57.702 50.000 0.00 0.00 0.00 3.27
2030 2070 2.297698 TGTACTCCCTCCGTTCTCAA 57.702 50.000 0.00 0.00 0.00 3.02
2031 2071 2.600790 TGTACTCCCTCCGTTCTCAAA 58.399 47.619 0.00 0.00 0.00 2.69
2032 2072 3.170717 TGTACTCCCTCCGTTCTCAAAT 58.829 45.455 0.00 0.00 0.00 2.32
2033 2073 4.346730 TGTACTCCCTCCGTTCTCAAATA 58.653 43.478 0.00 0.00 0.00 1.40
2034 2074 4.960469 TGTACTCCCTCCGTTCTCAAATAT 59.040 41.667 0.00 0.00 0.00 1.28
2035 2075 5.424252 TGTACTCCCTCCGTTCTCAAATATT 59.576 40.000 0.00 0.00 0.00 1.28
2036 2076 5.437191 ACTCCCTCCGTTCTCAAATATTT 57.563 39.130 0.00 0.00 0.00 1.40
2037 2077 5.186198 ACTCCCTCCGTTCTCAAATATTTG 58.814 41.667 20.13 20.13 39.48 2.32
2038 2078 5.174037 TCCCTCCGTTCTCAAATATTTGT 57.826 39.130 23.95 0.00 39.18 2.83
2039 2079 5.183228 TCCCTCCGTTCTCAAATATTTGTC 58.817 41.667 23.95 13.65 39.18 3.18
2040 2080 5.045869 TCCCTCCGTTCTCAAATATTTGTCT 60.046 40.000 23.95 0.00 39.18 3.41
2041 2081 5.648092 CCCTCCGTTCTCAAATATTTGTCTT 59.352 40.000 23.95 0.00 39.18 3.01
2042 2082 6.151144 CCCTCCGTTCTCAAATATTTGTCTTT 59.849 38.462 23.95 0.00 39.18 2.52
2043 2083 7.244192 CCTCCGTTCTCAAATATTTGTCTTTC 58.756 38.462 23.95 12.84 39.18 2.62
2044 2084 7.119846 CCTCCGTTCTCAAATATTTGTCTTTCT 59.880 37.037 23.95 0.00 39.18 2.52
2045 2085 9.151471 CTCCGTTCTCAAATATTTGTCTTTCTA 57.849 33.333 23.95 5.84 39.18 2.10
2046 2086 9.151471 TCCGTTCTCAAATATTTGTCTTTCTAG 57.849 33.333 23.95 14.05 39.18 2.43
2047 2087 8.391106 CCGTTCTCAAATATTTGTCTTTCTAGG 58.609 37.037 23.95 15.18 39.18 3.02
2048 2088 7.905493 CGTTCTCAAATATTTGTCTTTCTAGGC 59.095 37.037 23.95 10.33 39.18 3.93
2049 2089 8.730680 GTTCTCAAATATTTGTCTTTCTAGGCA 58.269 33.333 23.95 3.47 39.18 4.75
2050 2090 9.466497 TTCTCAAATATTTGTCTTTCTAGGCAT 57.534 29.630 23.95 0.00 35.56 4.40
2051 2091 9.466497 TCTCAAATATTTGTCTTTCTAGGCATT 57.534 29.630 23.95 0.00 35.56 3.56
2059 2099 9.657419 ATTTGTCTTTCTAGGCATTTTAAATGG 57.343 29.630 17.89 3.11 35.56 3.16
2060 2100 8.415950 TTGTCTTTCTAGGCATTTTAAATGGA 57.584 30.769 17.89 5.27 35.56 3.41
2061 2101 7.826690 TGTCTTTCTAGGCATTTTAAATGGAC 58.173 34.615 17.89 13.56 29.10 4.02
2062 2102 7.669722 TGTCTTTCTAGGCATTTTAAATGGACT 59.330 33.333 17.89 9.51 29.10 3.85
2063 2103 8.184848 GTCTTTCTAGGCATTTTAAATGGACTC 58.815 37.037 17.89 2.75 0.00 3.36
2064 2104 7.888021 TCTTTCTAGGCATTTTAAATGGACTCA 59.112 33.333 17.89 0.00 0.00 3.41
2065 2105 8.415950 TTTCTAGGCATTTTAAATGGACTCAA 57.584 30.769 17.89 2.83 0.00 3.02
2066 2106 7.391148 TCTAGGCATTTTAAATGGACTCAAC 57.609 36.000 17.89 1.13 0.00 3.18
2067 2107 6.945435 TCTAGGCATTTTAAATGGACTCAACA 59.055 34.615 17.89 0.00 0.00 3.33
2068 2108 6.610075 AGGCATTTTAAATGGACTCAACAT 57.390 33.333 17.89 0.00 0.00 2.71
2069 2109 7.716799 AGGCATTTTAAATGGACTCAACATA 57.283 32.000 17.89 0.00 0.00 2.29
2070 2110 7.547227 AGGCATTTTAAATGGACTCAACATAC 58.453 34.615 17.89 0.00 0.00 2.39
2071 2111 6.472163 GGCATTTTAAATGGACTCAACATACG 59.528 38.462 17.89 0.00 0.00 3.06
2072 2112 7.247728 GCATTTTAAATGGACTCAACATACGA 58.752 34.615 17.89 0.00 0.00 3.43
2073 2113 7.753132 GCATTTTAAATGGACTCAACATACGAA 59.247 33.333 17.89 0.00 0.00 3.85
2074 2114 9.787532 CATTTTAAATGGACTCAACATACGAAT 57.212 29.630 9.63 0.00 0.00 3.34
2075 2115 9.787532 ATTTTAAATGGACTCAACATACGAATG 57.212 29.630 0.00 0.00 39.17 2.67
2077 2117 9.438228 TTTAAATGGACTCAACATACGAATGTA 57.562 29.630 0.00 0.00 45.79 2.29
2078 2118 9.607988 TTAAATGGACTCAACATACGAATGTAT 57.392 29.630 0.00 0.00 45.79 2.29
2115 2155 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
2116 2156 5.536554 AGTGTAGATTCACTCATTTTGCG 57.463 39.130 0.00 0.00 44.07 4.85
2117 2157 4.091424 GTGTAGATTCACTCATTTTGCGC 58.909 43.478 0.00 0.00 35.68 6.09
2118 2158 2.927553 AGATTCACTCATTTTGCGCC 57.072 45.000 4.18 0.00 0.00 6.53
2119 2159 1.131126 AGATTCACTCATTTTGCGCCG 59.869 47.619 4.18 0.00 0.00 6.46
2120 2160 0.881118 ATTCACTCATTTTGCGCCGT 59.119 45.000 4.18 0.00 0.00 5.68
2121 2161 1.514003 TTCACTCATTTTGCGCCGTA 58.486 45.000 4.18 0.00 0.00 4.02
2122 2162 1.732941 TCACTCATTTTGCGCCGTAT 58.267 45.000 4.18 0.00 0.00 3.06
2123 2163 1.396648 TCACTCATTTTGCGCCGTATG 59.603 47.619 4.18 5.63 0.00 2.39
2124 2164 1.130373 CACTCATTTTGCGCCGTATGT 59.870 47.619 4.18 0.00 0.00 2.29
2125 2165 2.350192 CACTCATTTTGCGCCGTATGTA 59.650 45.455 4.18 0.00 0.00 2.29
2126 2166 2.607635 ACTCATTTTGCGCCGTATGTAG 59.392 45.455 4.18 7.56 0.00 2.74
2127 2167 2.607635 CTCATTTTGCGCCGTATGTAGT 59.392 45.455 4.18 0.00 0.00 2.73
2128 2168 2.605818 TCATTTTGCGCCGTATGTAGTC 59.394 45.455 4.18 0.00 0.00 2.59
2129 2169 2.081725 TTTTGCGCCGTATGTAGTCA 57.918 45.000 4.18 0.00 0.00 3.41
2130 2170 1.352114 TTTGCGCCGTATGTAGTCAC 58.648 50.000 4.18 0.00 0.00 3.67
2131 2171 0.528924 TTGCGCCGTATGTAGTCACT 59.471 50.000 4.18 0.00 0.00 3.41
2132 2172 0.528924 TGCGCCGTATGTAGTCACTT 59.471 50.000 4.18 0.00 0.00 3.16
2133 2173 0.921347 GCGCCGTATGTAGTCACTTG 59.079 55.000 0.00 0.00 0.00 3.16
2134 2174 1.734707 GCGCCGTATGTAGTCACTTGT 60.735 52.381 0.00 0.00 0.00 3.16
2135 2175 2.602878 CGCCGTATGTAGTCACTTGTT 58.397 47.619 0.00 0.00 0.00 2.83
2136 2176 2.344441 CGCCGTATGTAGTCACTTGTTG 59.656 50.000 0.00 0.00 0.00 3.33
2137 2177 3.581755 GCCGTATGTAGTCACTTGTTGA 58.418 45.455 0.00 0.00 0.00 3.18
2138 2178 3.991773 GCCGTATGTAGTCACTTGTTGAA 59.008 43.478 0.00 0.00 35.39 2.69
2139 2179 4.449743 GCCGTATGTAGTCACTTGTTGAAA 59.550 41.667 0.00 0.00 35.39 2.69
2140 2180 5.121768 GCCGTATGTAGTCACTTGTTGAAAT 59.878 40.000 0.00 0.00 35.39 2.17
2141 2181 6.672357 GCCGTATGTAGTCACTTGTTGAAATC 60.672 42.308 0.00 0.00 35.39 2.17
2142 2182 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
2143 2183 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
2144 2184 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
2145 2185 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
2146 2186 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2147 2187 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2148 2188 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2149 2189 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2150 2190 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2151 2191 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2152 2192 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2153 2193 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2154 2194 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2155 2195 9.050601 ACTTGTTGAAATCTCTAGAAAGACAAG 57.949 33.333 17.75 17.75 33.18 3.16
2156 2196 8.964476 TTGTTGAAATCTCTAGAAAGACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2158 2198 9.477484 TGTTGAAATCTCTAGAAAGACAAGTAC 57.523 33.333 0.00 0.00 0.00 2.73
2159 2199 9.699703 GTTGAAATCTCTAGAAAGACAAGTACT 57.300 33.333 0.00 0.00 0.00 2.73
2160 2200 9.915629 TTGAAATCTCTAGAAAGACAAGTACTC 57.084 33.333 0.00 0.00 0.00 2.59
2161 2201 8.524487 TGAAATCTCTAGAAAGACAAGTACTCC 58.476 37.037 0.00 0.00 0.00 3.85
2162 2202 7.412853 AATCTCTAGAAAGACAAGTACTCCC 57.587 40.000 0.00 0.00 0.00 4.30
2163 2203 6.142259 TCTCTAGAAAGACAAGTACTCCCT 57.858 41.667 0.00 0.00 0.00 4.20
2164 2204 6.181908 TCTCTAGAAAGACAAGTACTCCCTC 58.818 44.000 0.00 0.00 0.00 4.30
2165 2205 5.262804 TCTAGAAAGACAAGTACTCCCTCC 58.737 45.833 0.00 0.00 0.00 4.30
2166 2206 2.826725 AGAAAGACAAGTACTCCCTCCG 59.173 50.000 0.00 0.00 0.00 4.63
2167 2207 2.305858 AAGACAAGTACTCCCTCCGT 57.694 50.000 0.00 0.00 0.00 4.69
2168 2208 3.446442 AAGACAAGTACTCCCTCCGTA 57.554 47.619 0.00 0.00 0.00 4.02
2169 2209 3.446442 AGACAAGTACTCCCTCCGTAA 57.554 47.619 0.00 0.00 0.00 3.18
2170 2210 3.771216 AGACAAGTACTCCCTCCGTAAA 58.229 45.455 0.00 0.00 0.00 2.01
2171 2211 3.509184 AGACAAGTACTCCCTCCGTAAAC 59.491 47.826 0.00 0.00 0.00 2.01
2172 2212 3.504375 ACAAGTACTCCCTCCGTAAACT 58.496 45.455 0.00 0.00 0.00 2.66
2173 2213 4.666512 ACAAGTACTCCCTCCGTAAACTA 58.333 43.478 0.00 0.00 0.00 2.24
2174 2214 5.079643 ACAAGTACTCCCTCCGTAAACTAA 58.920 41.667 0.00 0.00 0.00 2.24
2175 2215 5.718607 ACAAGTACTCCCTCCGTAAACTAAT 59.281 40.000 0.00 0.00 0.00 1.73
2176 2216 6.891908 ACAAGTACTCCCTCCGTAAACTAATA 59.108 38.462 0.00 0.00 0.00 0.98
2177 2217 7.562821 ACAAGTACTCCCTCCGTAAACTAATAT 59.437 37.037 0.00 0.00 0.00 1.28
2178 2218 9.071276 CAAGTACTCCCTCCGTAAACTAATATA 57.929 37.037 0.00 0.00 0.00 0.86
2179 2219 9.646522 AAGTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
2180 2220 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
2181 2221 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
2182 2222 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2183 2223 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2184 2224 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2185 2225 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
2186 2226 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2187 2227 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2188 2228 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2189 2229 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2190 2230 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2202 2242 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
2203 2243 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
2204 2244 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
2205 2245 8.954350 AGAGCGTTTAGATCACTACTTTAGTAA 58.046 33.333 0.00 0.00 37.82 2.24
2206 2246 9.733219 GAGCGTTTAGATCACTACTTTAGTAAT 57.267 33.333 0.00 0.00 37.23 1.89
2207 2247 9.733219 AGCGTTTAGATCACTACTTTAGTAATC 57.267 33.333 0.00 0.00 37.23 1.75
2208 2248 9.733219 GCGTTTAGATCACTACTTTAGTAATCT 57.267 33.333 4.72 4.72 37.23 2.40
2214 2254 9.733219 AGATCACTACTTTAGTAATCTAAACGC 57.267 33.333 0.00 0.00 40.05 4.84
2215 2255 9.733219 GATCACTACTTTAGTAATCTAAACGCT 57.267 33.333 0.00 0.00 40.05 5.07
2216 2256 9.733219 ATCACTACTTTAGTAATCTAAACGCTC 57.267 33.333 0.00 0.00 40.05 5.03
2217 2257 8.954350 TCACTACTTTAGTAATCTAAACGCTCT 58.046 33.333 0.00 0.00 40.05 4.09
2218 2258 9.570488 CACTACTTTAGTAATCTAAACGCTCTT 57.430 33.333 0.00 0.00 40.05 2.85
2235 2275 7.772332 ACGCTCTTATATTTGTTTACAGAGG 57.228 36.000 0.00 0.00 0.00 3.69
2236 2276 6.761714 ACGCTCTTATATTTGTTTACAGAGGG 59.238 38.462 8.36 8.36 38.95 4.30
2237 2277 6.984474 CGCTCTTATATTTGTTTACAGAGGGA 59.016 38.462 4.76 0.00 36.40 4.20
2238 2278 7.169982 CGCTCTTATATTTGTTTACAGAGGGAG 59.830 40.741 4.76 0.00 36.40 4.30
2239 2279 7.988028 GCTCTTATATTTGTTTACAGAGGGAGT 59.012 37.037 0.00 0.00 0.00 3.85
2247 2287 7.801893 TTGTTTACAGAGGGAGTATTTAGGA 57.198 36.000 0.00 0.00 0.00 2.94
2248 2288 7.801893 TGTTTACAGAGGGAGTATTTAGGAA 57.198 36.000 0.00 0.00 0.00 3.36
2249 2289 7.618137 TGTTTACAGAGGGAGTATTTAGGAAC 58.382 38.462 0.00 0.00 0.00 3.62
2250 2290 6.461110 TTACAGAGGGAGTATTTAGGAACG 57.539 41.667 0.00 0.00 0.00 3.95
2251 2291 3.705072 ACAGAGGGAGTATTTAGGAACGG 59.295 47.826 0.00 0.00 0.00 4.44
2252 2292 3.958798 CAGAGGGAGTATTTAGGAACGGA 59.041 47.826 0.00 0.00 0.00 4.69
2253 2293 4.038162 CAGAGGGAGTATTTAGGAACGGAG 59.962 50.000 0.00 0.00 0.00 4.63
2254 2294 3.306613 AGGGAGTATTTAGGAACGGAGG 58.693 50.000 0.00 0.00 0.00 4.30
2255 2295 2.367894 GGGAGTATTTAGGAACGGAGGG 59.632 54.545 0.00 0.00 0.00 4.30
2256 2296 3.303049 GGAGTATTTAGGAACGGAGGGA 58.697 50.000 0.00 0.00 0.00 4.20
2257 2297 3.321396 GGAGTATTTAGGAACGGAGGGAG 59.679 52.174 0.00 0.00 0.00 4.30
2258 2298 3.959449 GAGTATTTAGGAACGGAGGGAGT 59.041 47.826 0.00 0.00 0.00 3.85
2259 2299 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
2443 2783 0.108898 CTCAGGCAGGTGAAGACGAG 60.109 60.000 0.00 0.00 0.00 4.18
2455 2795 0.957395 AAGACGAGCGACTACGGGAA 60.957 55.000 0.00 0.00 40.15 3.97
2553 2893 4.218635 TCTGAGATCAACGGCTGGATATAC 59.781 45.833 0.00 0.00 0.00 1.47
2624 2964 5.534654 GGCAGGGTTAATGCTTTCATATACA 59.465 40.000 0.00 0.00 43.35 2.29
2625 2965 6.209391 GGCAGGGTTAATGCTTTCATATACAT 59.791 38.462 0.00 0.00 43.35 2.29
2626 2966 7.393234 GGCAGGGTTAATGCTTTCATATACATA 59.607 37.037 0.00 0.00 43.35 2.29
2627 2967 8.960591 GCAGGGTTAATGCTTTCATATACATAT 58.039 33.333 0.00 0.00 40.59 1.78
2882 3257 7.042335 AGTGGTTGTATGCTCTTAGTTGATAC 58.958 38.462 0.00 0.00 0.00 2.24
2883 3258 7.042335 GTGGTTGTATGCTCTTAGTTGATACT 58.958 38.462 0.00 0.00 38.44 2.12
2884 3259 7.222999 GTGGTTGTATGCTCTTAGTTGATACTC 59.777 40.741 0.00 0.00 35.78 2.59
2885 3260 6.702282 GGTTGTATGCTCTTAGTTGATACTCC 59.298 42.308 0.00 0.00 35.78 3.85
2886 3261 6.406692 TGTATGCTCTTAGTTGATACTCCC 57.593 41.667 0.00 0.00 35.78 4.30
2887 3262 6.136857 TGTATGCTCTTAGTTGATACTCCCT 58.863 40.000 0.00 0.00 35.78 4.20
2888 3263 5.799827 ATGCTCTTAGTTGATACTCCCTC 57.200 43.478 0.00 0.00 35.78 4.30
2889 3264 3.961408 TGCTCTTAGTTGATACTCCCTCC 59.039 47.826 0.00 0.00 35.78 4.30
2890 3265 3.004944 GCTCTTAGTTGATACTCCCTCCG 59.995 52.174 0.00 0.00 35.78 4.63
2891 3266 4.208746 CTCTTAGTTGATACTCCCTCCGT 58.791 47.826 0.00 0.00 35.78 4.69
2892 3267 4.607239 TCTTAGTTGATACTCCCTCCGTT 58.393 43.478 0.00 0.00 35.78 4.44
2893 3268 4.643784 TCTTAGTTGATACTCCCTCCGTTC 59.356 45.833 0.00 0.00 35.78 3.95
2894 3269 2.108970 AGTTGATACTCCCTCCGTTCC 58.891 52.381 0.00 0.00 0.00 3.62
2895 3270 1.829222 GTTGATACTCCCTCCGTTCCA 59.171 52.381 0.00 0.00 0.00 3.53
2896 3271 2.235402 GTTGATACTCCCTCCGTTCCAA 59.765 50.000 0.00 0.00 0.00 3.53
2897 3272 2.542550 TGATACTCCCTCCGTTCCAAA 58.457 47.619 0.00 0.00 0.00 3.28
2898 3273 2.907696 TGATACTCCCTCCGTTCCAAAA 59.092 45.455 0.00 0.00 0.00 2.44
2899 3274 3.521937 TGATACTCCCTCCGTTCCAAAAT 59.478 43.478 0.00 0.00 0.00 1.82
2900 3275 4.717778 TGATACTCCCTCCGTTCCAAAATA 59.282 41.667 0.00 0.00 0.00 1.40
2901 3276 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2902 3277 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2903 3278 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2904 3279 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2905 3280 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2906 3281 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2907 3282 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2908 3283 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2909 3284 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2910 3285 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
2911 3286 6.414732 TCCGTTCCAAAATAGATGACTCAAT 58.585 36.000 0.00 0.00 0.00 2.57
2912 3287 6.884295 TCCGTTCCAAAATAGATGACTCAATT 59.116 34.615 0.00 0.00 0.00 2.32
2913 3288 7.393234 TCCGTTCCAAAATAGATGACTCAATTT 59.607 33.333 0.00 0.00 0.00 1.82
2914 3289 7.698130 CCGTTCCAAAATAGATGACTCAATTTC 59.302 37.037 0.00 0.00 0.00 2.17
2915 3290 7.426456 CGTTCCAAAATAGATGACTCAATTTCG 59.574 37.037 0.00 0.00 0.00 3.46
2916 3291 7.921786 TCCAAAATAGATGACTCAATTTCGT 57.078 32.000 0.00 0.00 0.00 3.85
2917 3292 9.443323 TTCCAAAATAGATGACTCAATTTCGTA 57.557 29.630 0.00 0.00 0.00 3.43
2918 3293 8.879759 TCCAAAATAGATGACTCAATTTCGTAC 58.120 33.333 0.00 0.00 0.00 3.67
2919 3294 8.883731 CCAAAATAGATGACTCAATTTCGTACT 58.116 33.333 0.00 0.00 0.00 2.73
2949 3324 8.891671 TTAGTACAAAGGTAGTACAAACTTGG 57.108 34.615 2.06 0.00 43.24 3.61
2950 3325 6.293698 AGTACAAAGGTAGTACAAACTTGGG 58.706 40.000 2.06 0.00 43.24 4.12
2951 3326 5.120054 ACAAAGGTAGTACAAACTTGGGT 57.880 39.130 2.06 0.00 37.15 4.51
2952 3327 5.128205 ACAAAGGTAGTACAAACTTGGGTC 58.872 41.667 2.06 0.00 37.15 4.46
2953 3328 5.127491 CAAAGGTAGTACAAACTTGGGTCA 58.873 41.667 2.06 0.00 37.15 4.02
2954 3329 5.578157 AAGGTAGTACAAACTTGGGTCAT 57.422 39.130 2.06 0.00 37.15 3.06
2955 3330 5.161943 AGGTAGTACAAACTTGGGTCATC 57.838 43.478 2.06 0.00 37.15 2.92
2956 3331 4.844655 AGGTAGTACAAACTTGGGTCATCT 59.155 41.667 2.06 0.00 37.15 2.90
2957 3332 6.021030 AGGTAGTACAAACTTGGGTCATCTA 58.979 40.000 2.06 0.00 37.15 1.98
2958 3333 6.672657 AGGTAGTACAAACTTGGGTCATCTAT 59.327 38.462 2.06 0.00 37.15 1.98
2959 3334 7.182206 AGGTAGTACAAACTTGGGTCATCTATT 59.818 37.037 2.06 0.00 37.15 1.73
2960 3335 7.827729 GGTAGTACAAACTTGGGTCATCTATTT 59.172 37.037 2.06 0.00 37.15 1.40
2961 3336 9.227777 GTAGTACAAACTTGGGTCATCTATTTT 57.772 33.333 0.00 0.00 37.15 1.82
2962 3337 8.110860 AGTACAAACTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 29.00 2.44
2963 3338 6.345096 ACAAACTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
2964 3339 6.074648 ACAAACTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2965 3340 6.553100 ACAAACTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
2966 3341 6.590234 AACTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2967 3342 4.700213 ACTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2968 3343 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2969 3344 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2970 3345 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2971 3346 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2972 3347 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2973 3348 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2974 3349 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2975 3350 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2976 3351 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2977 3352 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
2978 3353 6.138263 TCTATTTTGGAACGGAGGGAGTATA 58.862 40.000 0.00 0.00 0.00 1.47
2979 3354 5.906772 ATTTTGGAACGGAGGGAGTATAT 57.093 39.130 0.00 0.00 0.00 0.86
2980 3355 4.682778 TTTGGAACGGAGGGAGTATATG 57.317 45.455 0.00 0.00 0.00 1.78
3020 3395 5.119931 TGAAATTGTGTCATGGCTAACAC 57.880 39.130 8.14 8.14 44.75 3.32
3051 3426 9.979270 GCATAAAAGATACATAAATCATCTCGG 57.021 33.333 0.00 0.00 0.00 4.63
3104 3479 3.391506 TGATTGTCAGATAGGATGCCG 57.608 47.619 0.00 0.00 0.00 5.69
3240 3812 1.593006 GTCTGTTCGTGTCTTGTGTGG 59.407 52.381 0.00 0.00 0.00 4.17
3306 3878 1.000506 AGAAAGAAAGTAGGCGCGTGA 59.999 47.619 13.84 0.00 0.00 4.35
3321 3893 3.667960 GCGCGTGAAACAAAGAATGAGAT 60.668 43.478 8.43 0.00 35.74 2.75
3354 3926 9.433153 GACTCCGTATTAATAGGATTTTAAGGG 57.567 37.037 15.17 0.12 33.04 3.95
3442 4887 5.751680 TCAAATTTTCGAGTTCTTGCTCAG 58.248 37.500 0.00 0.00 35.33 3.35
3504 4949 1.363744 GCCTCATGACGAGTGGAAAG 58.636 55.000 2.22 0.00 40.48 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.256477 ACATCATTTCAAATGAATATGCATGTC 57.744 29.630 16.76 7.36 33.54 3.06
28 29 8.928733 AGTTGCACATATTTGAAACATCATTTC 58.071 29.630 13.95 0.00 0.00 2.17
188 190 0.537143 ACTTTTCCGGCATGCAGACA 60.537 50.000 21.36 5.85 0.00 3.41
436 439 2.293399 GGTGCCACAAGTTAAGAGGTTG 59.707 50.000 0.00 0.00 0.00 3.77
608 611 2.158449 CAGAAGCTAAAGCAACTGACCG 59.842 50.000 17.41 0.00 43.52 4.79
702 705 2.119495 GATGGGTCAGAGCTTTCCCTA 58.881 52.381 14.40 0.00 40.48 3.53
780 783 0.984432 TCTCTGGGGCAGCATGATGA 60.984 55.000 16.67 0.00 39.69 2.92
1385 1388 9.409839 AAGAACTTCTTGCTAGCTTGCTAGCTA 62.410 40.741 37.70 32.51 44.75 3.32
1678 1681 6.579666 AATTCAGAGTTTGCTGCATAGAAA 57.420 33.333 1.84 0.00 35.86 2.52
1707 1710 9.148879 CCGGATGGAGGAAGTATTTATATATCT 57.851 37.037 0.00 0.00 37.49 1.98
1708 1711 9.144298 TCCGGATGGAGGAAGTATTTATATATC 57.856 37.037 0.00 0.00 40.17 1.63
1725 1728 4.771114 ATGACAAGTATTTCCGGATGGA 57.229 40.909 4.15 0.00 44.61 3.41
1726 1729 5.835113 AAATGACAAGTATTTCCGGATGG 57.165 39.130 4.15 0.00 0.00 3.51
1727 1730 8.076178 GGATAAAATGACAAGTATTTCCGGATG 58.924 37.037 4.15 0.97 0.00 3.51
1728 1731 7.777910 TGGATAAAATGACAAGTATTTCCGGAT 59.222 33.333 4.15 0.00 0.00 4.18
1729 1732 7.113437 TGGATAAAATGACAAGTATTTCCGGA 58.887 34.615 0.00 0.00 0.00 5.14
1730 1733 7.328277 TGGATAAAATGACAAGTATTTCCGG 57.672 36.000 0.00 0.00 0.00 5.14
1731 1734 9.801873 AAATGGATAAAATGACAAGTATTTCCG 57.198 29.630 0.00 0.00 0.00 4.30
1737 1740 9.527157 TCCTCAAAATGGATAAAATGACAAGTA 57.473 29.630 0.00 0.00 0.00 2.24
1738 1741 8.306761 GTCCTCAAAATGGATAAAATGACAAGT 58.693 33.333 0.00 0.00 35.87 3.16
1739 1742 8.306038 TGTCCTCAAAATGGATAAAATGACAAG 58.694 33.333 0.00 0.00 35.87 3.16
1740 1743 8.187913 TGTCCTCAAAATGGATAAAATGACAA 57.812 30.769 0.00 0.00 35.87 3.18
1741 1744 7.773489 TGTCCTCAAAATGGATAAAATGACA 57.227 32.000 0.00 0.00 35.87 3.58
1742 1745 7.276438 GCTTGTCCTCAAAATGGATAAAATGAC 59.724 37.037 0.00 0.00 34.98 3.06
1743 1746 7.039152 TGCTTGTCCTCAAAATGGATAAAATGA 60.039 33.333 0.00 0.00 34.98 2.57
1744 1747 7.098477 TGCTTGTCCTCAAAATGGATAAAATG 58.902 34.615 0.00 0.00 34.98 2.32
1745 1748 7.243604 TGCTTGTCCTCAAAATGGATAAAAT 57.756 32.000 0.00 0.00 34.98 1.82
1746 1749 6.662865 TGCTTGTCCTCAAAATGGATAAAA 57.337 33.333 0.00 0.00 34.98 1.52
1747 1750 6.855763 ATGCTTGTCCTCAAAATGGATAAA 57.144 33.333 0.00 0.00 34.98 1.40
1748 1751 6.855763 AATGCTTGTCCTCAAAATGGATAA 57.144 33.333 0.00 0.00 35.87 1.75
1749 1752 6.855763 AAATGCTTGTCCTCAAAATGGATA 57.144 33.333 0.00 0.00 35.87 2.59
1750 1753 5.750352 AAATGCTTGTCCTCAAAATGGAT 57.250 34.783 0.00 0.00 35.87 3.41
1751 1754 5.540911 GAAAATGCTTGTCCTCAAAATGGA 58.459 37.500 0.00 0.00 32.87 3.41
1752 1755 4.386652 CGAAAATGCTTGTCCTCAAAATGG 59.613 41.667 0.00 0.00 32.87 3.16
1753 1756 4.386652 CCGAAAATGCTTGTCCTCAAAATG 59.613 41.667 0.00 0.00 32.87 2.32
1754 1757 4.280677 TCCGAAAATGCTTGTCCTCAAAAT 59.719 37.500 0.00 0.00 32.87 1.82
1755 1758 3.634448 TCCGAAAATGCTTGTCCTCAAAA 59.366 39.130 0.00 0.00 32.87 2.44
1756 1759 3.004315 GTCCGAAAATGCTTGTCCTCAAA 59.996 43.478 0.00 0.00 32.87 2.69
1757 1760 2.552315 GTCCGAAAATGCTTGTCCTCAA 59.448 45.455 0.00 0.00 0.00 3.02
1758 1761 2.151202 GTCCGAAAATGCTTGTCCTCA 58.849 47.619 0.00 0.00 0.00 3.86
1759 1762 1.128692 CGTCCGAAAATGCTTGTCCTC 59.871 52.381 0.00 0.00 0.00 3.71
1760 1763 1.156736 CGTCCGAAAATGCTTGTCCT 58.843 50.000 0.00 0.00 0.00 3.85
1761 1764 0.168128 CCGTCCGAAAATGCTTGTCC 59.832 55.000 0.00 0.00 0.00 4.02
1762 1765 1.128692 CTCCGTCCGAAAATGCTTGTC 59.871 52.381 0.00 0.00 0.00 3.18
1763 1766 1.156736 CTCCGTCCGAAAATGCTTGT 58.843 50.000 0.00 0.00 0.00 3.16
1764 1767 0.447801 CCTCCGTCCGAAAATGCTTG 59.552 55.000 0.00 0.00 0.00 4.01
1765 1768 0.323629 TCCTCCGTCCGAAAATGCTT 59.676 50.000 0.00 0.00 0.00 3.91
1766 1769 0.323629 TTCCTCCGTCCGAAAATGCT 59.676 50.000 0.00 0.00 0.00 3.79
1767 1770 0.727398 CTTCCTCCGTCCGAAAATGC 59.273 55.000 0.00 0.00 0.00 3.56
1768 1771 2.094762 ACTTCCTCCGTCCGAAAATG 57.905 50.000 0.00 0.00 0.00 2.32
1769 1772 5.303589 TCATATACTTCCTCCGTCCGAAAAT 59.696 40.000 0.00 0.00 0.00 1.82
1770 1773 4.646040 TCATATACTTCCTCCGTCCGAAAA 59.354 41.667 0.00 0.00 0.00 2.29
1771 1774 4.037208 GTCATATACTTCCTCCGTCCGAAA 59.963 45.833 0.00 0.00 0.00 3.46
1772 1775 3.567164 GTCATATACTTCCTCCGTCCGAA 59.433 47.826 0.00 0.00 0.00 4.30
1773 1776 3.144506 GTCATATACTTCCTCCGTCCGA 58.855 50.000 0.00 0.00 0.00 4.55
1774 1777 2.095869 CGTCATATACTTCCTCCGTCCG 60.096 54.545 0.00 0.00 0.00 4.79
1775 1778 3.144506 TCGTCATATACTTCCTCCGTCC 58.855 50.000 0.00 0.00 0.00 4.79
1776 1779 4.275443 AGTTCGTCATATACTTCCTCCGTC 59.725 45.833 0.00 0.00 0.00 4.79
1777 1780 4.036498 CAGTTCGTCATATACTTCCTCCGT 59.964 45.833 0.00 0.00 0.00 4.69
1778 1781 4.537965 CAGTTCGTCATATACTTCCTCCG 58.462 47.826 0.00 0.00 0.00 4.63
1779 1782 4.202121 TGCAGTTCGTCATATACTTCCTCC 60.202 45.833 0.00 0.00 0.00 4.30
1780 1783 4.933330 TGCAGTTCGTCATATACTTCCTC 58.067 43.478 0.00 0.00 0.00 3.71
1781 1784 4.645136 TCTGCAGTTCGTCATATACTTCCT 59.355 41.667 14.67 0.00 0.00 3.36
1782 1785 4.933330 TCTGCAGTTCGTCATATACTTCC 58.067 43.478 14.67 0.00 0.00 3.46
1783 1786 5.631512 GGATCTGCAGTTCGTCATATACTTC 59.368 44.000 14.67 0.00 0.00 3.01
1786 1789 4.920340 CAGGATCTGCAGTTCGTCATATAC 59.080 45.833 14.67 0.00 0.00 1.47
1805 1808 2.404923 TCGTTTTGTTCACCACAGGA 57.595 45.000 0.00 0.00 36.48 3.86
1869 1905 9.286946 CTGCTCTAGTTTGATTCAAATGATTTC 57.713 33.333 14.54 1.70 35.74 2.17
1924 1964 5.333645 GCTAGTGCTAATTTGATCCGACATG 60.334 44.000 0.00 0.00 36.03 3.21
1958 1998 3.009115 GCAGGGTGCCAGGGTCTA 61.009 66.667 0.00 0.00 37.42 2.59
1993 2033 1.939934 ACAAACGGATGACCATATGCG 59.060 47.619 0.00 0.00 45.68 4.73
2015 2055 5.186198 ACAAATATTTGAGAACGGAGGGAG 58.814 41.667 30.18 3.44 40.55 4.30
2016 2056 5.045869 AGACAAATATTTGAGAACGGAGGGA 60.046 40.000 30.18 0.00 40.55 4.20
2017 2057 5.186198 AGACAAATATTTGAGAACGGAGGG 58.814 41.667 30.18 4.03 40.55 4.30
2018 2058 6.743575 AAGACAAATATTTGAGAACGGAGG 57.256 37.500 30.18 4.51 40.55 4.30
2019 2059 8.034058 AGAAAGACAAATATTTGAGAACGGAG 57.966 34.615 30.18 5.19 40.55 4.63
2020 2060 7.979444 AGAAAGACAAATATTTGAGAACGGA 57.021 32.000 30.18 0.00 40.55 4.69
2021 2061 8.391106 CCTAGAAAGACAAATATTTGAGAACGG 58.609 37.037 30.18 16.36 40.55 4.44
2022 2062 7.905493 GCCTAGAAAGACAAATATTTGAGAACG 59.095 37.037 30.18 7.22 40.55 3.95
2023 2063 8.730680 TGCCTAGAAAGACAAATATTTGAGAAC 58.269 33.333 30.18 18.28 40.55 3.01
2024 2064 8.862325 TGCCTAGAAAGACAAATATTTGAGAA 57.138 30.769 30.18 10.27 40.55 2.87
2025 2065 9.466497 AATGCCTAGAAAGACAAATATTTGAGA 57.534 29.630 30.18 9.26 40.55 3.27
2033 2073 9.657419 CCATTTAAAATGCCTAGAAAGACAAAT 57.343 29.630 0.00 0.00 0.00 2.32
2034 2074 8.865090 TCCATTTAAAATGCCTAGAAAGACAAA 58.135 29.630 0.00 0.00 0.00 2.83
2035 2075 8.303876 GTCCATTTAAAATGCCTAGAAAGACAA 58.696 33.333 0.00 0.00 0.00 3.18
2036 2076 7.669722 AGTCCATTTAAAATGCCTAGAAAGACA 59.330 33.333 0.00 0.00 0.00 3.41
2037 2077 8.056407 AGTCCATTTAAAATGCCTAGAAAGAC 57.944 34.615 0.00 0.00 0.00 3.01
2038 2078 7.888021 TGAGTCCATTTAAAATGCCTAGAAAGA 59.112 33.333 0.00 0.00 0.00 2.52
2039 2079 8.055279 TGAGTCCATTTAAAATGCCTAGAAAG 57.945 34.615 0.00 0.00 0.00 2.62
2040 2080 8.303876 GTTGAGTCCATTTAAAATGCCTAGAAA 58.696 33.333 0.00 0.00 0.00 2.52
2041 2081 7.450014 TGTTGAGTCCATTTAAAATGCCTAGAA 59.550 33.333 0.00 0.00 0.00 2.10
2042 2082 6.945435 TGTTGAGTCCATTTAAAATGCCTAGA 59.055 34.615 0.00 0.00 0.00 2.43
2043 2083 7.156876 TGTTGAGTCCATTTAAAATGCCTAG 57.843 36.000 0.00 0.00 0.00 3.02
2044 2084 7.716799 ATGTTGAGTCCATTTAAAATGCCTA 57.283 32.000 0.00 0.00 0.00 3.93
2045 2085 6.610075 ATGTTGAGTCCATTTAAAATGCCT 57.390 33.333 0.00 0.00 0.00 4.75
2046 2086 6.472163 CGTATGTTGAGTCCATTTAAAATGCC 59.528 38.462 0.00 0.00 0.00 4.40
2047 2087 7.247728 TCGTATGTTGAGTCCATTTAAAATGC 58.752 34.615 0.00 0.00 0.00 3.56
2048 2088 9.787532 ATTCGTATGTTGAGTCCATTTAAAATG 57.212 29.630 0.00 0.00 0.00 2.32
2049 2089 9.787532 CATTCGTATGTTGAGTCCATTTAAAAT 57.212 29.630 0.00 0.00 0.00 1.82
2050 2090 8.788806 ACATTCGTATGTTGAGTCCATTTAAAA 58.211 29.630 1.31 0.00 42.29 1.52
2051 2091 8.330466 ACATTCGTATGTTGAGTCCATTTAAA 57.670 30.769 1.31 0.00 42.29 1.52
2052 2092 7.915293 ACATTCGTATGTTGAGTCCATTTAA 57.085 32.000 1.31 0.00 42.29 1.52
2053 2093 9.040939 CATACATTCGTATGTTGAGTCCATTTA 57.959 33.333 13.12 0.00 46.70 1.40
2054 2094 7.919690 CATACATTCGTATGTTGAGTCCATTT 58.080 34.615 13.12 0.00 46.70 2.32
2055 2095 7.482654 CATACATTCGTATGTTGAGTCCATT 57.517 36.000 13.12 0.00 46.70 3.16
2095 2135 4.091424 GCGCAAAATGAGTGAATCTACAC 58.909 43.478 0.30 0.00 40.60 2.90
2096 2136 3.126858 GGCGCAAAATGAGTGAATCTACA 59.873 43.478 10.83 0.00 0.00 2.74
2097 2137 3.685058 GGCGCAAAATGAGTGAATCTAC 58.315 45.455 10.83 0.00 0.00 2.59
2098 2138 2.351418 CGGCGCAAAATGAGTGAATCTA 59.649 45.455 10.83 0.00 0.00 1.98
2099 2139 1.131126 CGGCGCAAAATGAGTGAATCT 59.869 47.619 10.83 0.00 0.00 2.40
2100 2140 1.135689 ACGGCGCAAAATGAGTGAATC 60.136 47.619 10.83 0.00 0.00 2.52
2101 2141 0.881118 ACGGCGCAAAATGAGTGAAT 59.119 45.000 10.83 0.00 0.00 2.57
2102 2142 1.514003 TACGGCGCAAAATGAGTGAA 58.486 45.000 10.83 0.00 0.00 3.18
2103 2143 1.396648 CATACGGCGCAAAATGAGTGA 59.603 47.619 10.83 0.00 0.00 3.41
2104 2144 1.130373 ACATACGGCGCAAAATGAGTG 59.870 47.619 10.83 0.00 0.00 3.51
2105 2145 1.448985 ACATACGGCGCAAAATGAGT 58.551 45.000 10.83 0.00 0.00 3.41
2106 2146 2.607635 ACTACATACGGCGCAAAATGAG 59.392 45.455 10.83 10.39 0.00 2.90
2107 2147 2.605818 GACTACATACGGCGCAAAATGA 59.394 45.455 10.83 0.00 0.00 2.57
2108 2148 2.350192 TGACTACATACGGCGCAAAATG 59.650 45.455 10.83 11.57 0.00 2.32
2109 2149 2.350498 GTGACTACATACGGCGCAAAAT 59.650 45.455 10.83 0.00 0.00 1.82
2110 2150 1.727880 GTGACTACATACGGCGCAAAA 59.272 47.619 10.83 0.00 0.00 2.44
2111 2151 1.067425 AGTGACTACATACGGCGCAAA 60.067 47.619 10.83 0.00 0.00 3.68
2112 2152 0.528924 AGTGACTACATACGGCGCAA 59.471 50.000 10.83 0.00 0.00 4.85
2113 2153 0.528924 AAGTGACTACATACGGCGCA 59.471 50.000 10.83 0.00 0.00 6.09
2114 2154 0.921347 CAAGTGACTACATACGGCGC 59.079 55.000 6.90 0.00 0.00 6.53
2115 2155 2.273370 ACAAGTGACTACATACGGCG 57.727 50.000 4.80 4.80 0.00 6.46
2116 2156 3.581755 TCAACAAGTGACTACATACGGC 58.418 45.455 0.00 0.00 0.00 5.68
2117 2157 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
2118 2158 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
2119 2159 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2121 2161 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2122 2162 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2123 2163 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2124 2164 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2125 2165 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2126 2166 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2127 2167 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2128 2168 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
2129 2169 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2130 2170 9.050601 ACTTGTCTTTCTAGAGATTTCAACAAG 57.949 33.333 18.42 18.42 32.73 3.16
2131 2171 8.964476 ACTTGTCTTTCTAGAGATTTCAACAA 57.036 30.769 0.00 0.00 0.00 2.83
2132 2172 9.477484 GTACTTGTCTTTCTAGAGATTTCAACA 57.523 33.333 0.00 0.00 0.00 3.33
2133 2173 9.699703 AGTACTTGTCTTTCTAGAGATTTCAAC 57.300 33.333 0.00 0.00 0.00 3.18
2134 2174 9.915629 GAGTACTTGTCTTTCTAGAGATTTCAA 57.084 33.333 0.00 0.00 0.00 2.69
2135 2175 8.524487 GGAGTACTTGTCTTTCTAGAGATTTCA 58.476 37.037 0.00 0.00 0.00 2.69
2136 2176 7.977293 GGGAGTACTTGTCTTTCTAGAGATTTC 59.023 40.741 0.00 0.00 0.00 2.17
2137 2177 7.676468 AGGGAGTACTTGTCTTTCTAGAGATTT 59.324 37.037 0.00 0.00 0.00 2.17
2138 2178 7.186268 AGGGAGTACTTGTCTTTCTAGAGATT 58.814 38.462 0.00 0.00 0.00 2.40
2139 2179 6.737608 AGGGAGTACTTGTCTTTCTAGAGAT 58.262 40.000 0.00 0.00 0.00 2.75
2140 2180 6.142259 AGGGAGTACTTGTCTTTCTAGAGA 57.858 41.667 0.00 0.00 0.00 3.10
2141 2181 5.358725 GGAGGGAGTACTTGTCTTTCTAGAG 59.641 48.000 0.00 0.00 0.00 2.43
2142 2182 5.262804 GGAGGGAGTACTTGTCTTTCTAGA 58.737 45.833 0.00 0.00 0.00 2.43
2143 2183 4.096682 CGGAGGGAGTACTTGTCTTTCTAG 59.903 50.000 0.00 0.00 0.00 2.43
2144 2184 4.015084 CGGAGGGAGTACTTGTCTTTCTA 58.985 47.826 0.00 0.00 0.00 2.10
2145 2185 2.826725 CGGAGGGAGTACTTGTCTTTCT 59.173 50.000 0.00 0.00 0.00 2.52
2146 2186 2.561858 ACGGAGGGAGTACTTGTCTTTC 59.438 50.000 0.00 0.00 0.00 2.62
2147 2187 2.606378 ACGGAGGGAGTACTTGTCTTT 58.394 47.619 0.00 0.00 0.00 2.52
2148 2188 2.305858 ACGGAGGGAGTACTTGTCTT 57.694 50.000 0.00 0.00 0.00 3.01
2149 2189 3.446442 TTACGGAGGGAGTACTTGTCT 57.554 47.619 0.00 0.00 0.00 3.41
2150 2190 3.509184 AGTTTACGGAGGGAGTACTTGTC 59.491 47.826 0.00 0.00 0.00 3.18
2151 2191 3.504375 AGTTTACGGAGGGAGTACTTGT 58.496 45.455 0.00 0.00 0.00 3.16
2152 2192 5.649782 TTAGTTTACGGAGGGAGTACTTG 57.350 43.478 0.00 0.00 0.00 3.16
2153 2193 9.646522 TTATATTAGTTTACGGAGGGAGTACTT 57.353 33.333 0.00 0.00 0.00 2.24
2154 2194 9.294614 CTTATATTAGTTTACGGAGGGAGTACT 57.705 37.037 0.00 0.00 0.00 2.73
2155 2195 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
2156 2196 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
2157 2197 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
2158 2198 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
2159 2199 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
2160 2200 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
2161 2201 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2162 2202 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2163 2203 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2164 2204 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2176 2216 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
2177 2217 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
2178 2218 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
2179 2219 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
2180 2220 9.733219 ATTACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
2181 2221 9.733219 GATTACTAAAGTAGTGATCTAAACGCT 57.267 33.333 11.11 0.00 44.10 5.07
2189 2229 9.733219 AGCGTTTAGATTACTAAAGTAGTGATC 57.267 33.333 10.62 10.62 46.38 2.92
2190 2230 9.733219 GAGCGTTTAGATTACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
2191 2231 8.954350 AGAGCGTTTAGATTACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
2192 2232 9.570488 AAGAGCGTTTAGATTACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
2209 2249 8.665685 CCTCTGTAAACAAATATAAGAGCGTTT 58.334 33.333 0.00 0.00 0.00 3.60
2210 2250 7.280205 CCCTCTGTAAACAAATATAAGAGCGTT 59.720 37.037 0.00 0.00 0.00 4.84
2211 2251 6.761714 CCCTCTGTAAACAAATATAAGAGCGT 59.238 38.462 0.00 0.00 0.00 5.07
2212 2252 6.984474 TCCCTCTGTAAACAAATATAAGAGCG 59.016 38.462 0.00 0.00 0.00 5.03
2213 2253 7.988028 ACTCCCTCTGTAAACAAATATAAGAGC 59.012 37.037 0.00 0.00 0.00 4.09
2221 2261 8.832735 TCCTAAATACTCCCTCTGTAAACAAAT 58.167 33.333 0.00 0.00 0.00 2.32
2222 2262 8.209802 TCCTAAATACTCCCTCTGTAAACAAA 57.790 34.615 0.00 0.00 0.00 2.83
2223 2263 7.801893 TCCTAAATACTCCCTCTGTAAACAA 57.198 36.000 0.00 0.00 0.00 2.83
2224 2264 7.578189 CGTTCCTAAATACTCCCTCTGTAAACA 60.578 40.741 0.00 0.00 0.00 2.83
2225 2265 6.755607 CGTTCCTAAATACTCCCTCTGTAAAC 59.244 42.308 0.00 0.00 0.00 2.01
2226 2266 6.127253 CCGTTCCTAAATACTCCCTCTGTAAA 60.127 42.308 0.00 0.00 0.00 2.01
2227 2267 5.361857 CCGTTCCTAAATACTCCCTCTGTAA 59.638 44.000 0.00 0.00 0.00 2.41
2228 2268 4.891756 CCGTTCCTAAATACTCCCTCTGTA 59.108 45.833 0.00 0.00 0.00 2.74
2229 2269 3.705072 CCGTTCCTAAATACTCCCTCTGT 59.295 47.826 0.00 0.00 0.00 3.41
2230 2270 3.958798 TCCGTTCCTAAATACTCCCTCTG 59.041 47.826 0.00 0.00 0.00 3.35
2231 2271 4.216708 CTCCGTTCCTAAATACTCCCTCT 58.783 47.826 0.00 0.00 0.00 3.69
2232 2272 3.321396 CCTCCGTTCCTAAATACTCCCTC 59.679 52.174 0.00 0.00 0.00 4.30
2233 2273 3.306613 CCTCCGTTCCTAAATACTCCCT 58.693 50.000 0.00 0.00 0.00 4.20
2234 2274 2.367894 CCCTCCGTTCCTAAATACTCCC 59.632 54.545 0.00 0.00 0.00 4.30
2235 2275 3.303049 TCCCTCCGTTCCTAAATACTCC 58.697 50.000 0.00 0.00 0.00 3.85
2236 2276 3.959449 ACTCCCTCCGTTCCTAAATACTC 59.041 47.826 0.00 0.00 0.00 2.59
2237 2277 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
2238 2278 4.892345 ACTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
2239 2279 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2240 2280 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2241 2281 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2242 2282 3.094572 CAACTACTCCCTCCGTTCCTAA 58.905 50.000 0.00 0.00 0.00 2.69
2243 2283 2.042162 ACAACTACTCCCTCCGTTCCTA 59.958 50.000 0.00 0.00 0.00 2.94
2244 2284 1.203149 ACAACTACTCCCTCCGTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
2245 2285 1.264295 ACAACTACTCCCTCCGTTCC 58.736 55.000 0.00 0.00 0.00 3.62
2246 2286 4.525912 TTTACAACTACTCCCTCCGTTC 57.474 45.455 0.00 0.00 0.00 3.95
2247 2287 4.529377 TCATTTACAACTACTCCCTCCGTT 59.471 41.667 0.00 0.00 0.00 4.44
2248 2288 4.091549 TCATTTACAACTACTCCCTCCGT 58.908 43.478 0.00 0.00 0.00 4.69
2249 2289 4.730949 TCATTTACAACTACTCCCTCCG 57.269 45.455 0.00 0.00 0.00 4.63
2250 2290 7.562135 TGTAATCATTTACAACTACTCCCTCC 58.438 38.462 0.00 0.00 43.58 4.30
2311 2651 2.534150 CGAGCGGTACAAACAATTAGCG 60.534 50.000 0.00 0.00 41.11 4.26
2443 2783 1.268948 GGTCATAGTTCCCGTAGTCGC 60.269 57.143 0.00 0.00 35.54 5.19
2455 2795 1.192428 GGTCGGAGTTGGGTCATAGT 58.808 55.000 0.00 0.00 0.00 2.12
2539 2879 5.395324 GGCAGTATATGTATATCCAGCCGTT 60.395 44.000 0.00 0.00 0.00 4.44
2553 2893 1.060713 GCACGTAGCGGCAGTATATG 58.939 55.000 1.45 0.00 0.00 1.78
2882 3257 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2883 3258 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2884 3259 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2885 3260 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2886 3261 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2887 3262 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
2888 3263 6.683974 ATTGAGTCATCTATTTTGGAACGG 57.316 37.500 0.00 0.00 0.00 4.44
2889 3264 7.426456 CGAAATTGAGTCATCTATTTTGGAACG 59.574 37.037 0.00 0.00 39.80 3.95
2890 3265 8.237267 ACGAAATTGAGTCATCTATTTTGGAAC 58.763 33.333 15.68 0.45 42.04 3.62
2891 3266 8.335532 ACGAAATTGAGTCATCTATTTTGGAA 57.664 30.769 15.68 0.00 42.04 3.53
2892 3267 7.921786 ACGAAATTGAGTCATCTATTTTGGA 57.078 32.000 15.68 0.00 42.04 3.53
2893 3268 8.883731 AGTACGAAATTGAGTCATCTATTTTGG 58.116 33.333 15.68 8.80 42.04 3.28
2923 3298 9.328845 CCAAGTTTGTACTACCTTTGTACTAAA 57.671 33.333 0.00 0.00 40.44 1.85
2924 3299 7.933033 CCCAAGTTTGTACTACCTTTGTACTAA 59.067 37.037 0.00 0.00 40.44 2.24
2925 3300 7.071071 ACCCAAGTTTGTACTACCTTTGTACTA 59.929 37.037 0.00 0.00 40.44 1.82
2926 3301 6.126681 ACCCAAGTTTGTACTACCTTTGTACT 60.127 38.462 0.00 0.00 40.44 2.73
2927 3302 6.057533 ACCCAAGTTTGTACTACCTTTGTAC 58.942 40.000 0.00 0.00 40.27 2.90
2928 3303 6.126825 TGACCCAAGTTTGTACTACCTTTGTA 60.127 38.462 0.00 0.00 33.17 2.41
2929 3304 5.120054 ACCCAAGTTTGTACTACCTTTGT 57.880 39.130 0.00 0.00 33.17 2.83
2930 3305 5.127491 TGACCCAAGTTTGTACTACCTTTG 58.873 41.667 0.00 0.00 33.17 2.77
2931 3306 5.376756 TGACCCAAGTTTGTACTACCTTT 57.623 39.130 0.00 0.00 33.17 3.11
2932 3307 5.309806 AGATGACCCAAGTTTGTACTACCTT 59.690 40.000 0.00 0.00 33.17 3.50
2933 3308 4.844655 AGATGACCCAAGTTTGTACTACCT 59.155 41.667 0.00 0.00 33.17 3.08
2934 3309 5.161943 AGATGACCCAAGTTTGTACTACC 57.838 43.478 0.00 0.00 33.17 3.18
2935 3310 8.788325 AAATAGATGACCCAAGTTTGTACTAC 57.212 34.615 0.00 0.00 33.17 2.73
2936 3311 9.226606 CAAAATAGATGACCCAAGTTTGTACTA 57.773 33.333 0.00 0.00 33.17 1.82
2937 3312 7.176690 CCAAAATAGATGACCCAAGTTTGTACT 59.823 37.037 0.00 0.00 35.68 2.73
2938 3313 7.175990 TCCAAAATAGATGACCCAAGTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2939 3314 7.235079 TCCAAAATAGATGACCCAAGTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2940 3315 6.074648 TCCAAAATAGATGACCCAAGTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2941 3316 6.588719 TCCAAAATAGATGACCCAAGTTTG 57.411 37.500 0.00 0.00 0.00 2.93
2942 3317 6.294508 CGTTCCAAAATAGATGACCCAAGTTT 60.295 38.462 0.00 0.00 0.00 2.66
2943 3318 5.183140 CGTTCCAAAATAGATGACCCAAGTT 59.817 40.000 0.00 0.00 0.00 2.66
2944 3319 4.700213 CGTTCCAAAATAGATGACCCAAGT 59.300 41.667 0.00 0.00 0.00 3.16
2945 3320 4.096382 CCGTTCCAAAATAGATGACCCAAG 59.904 45.833 0.00 0.00 0.00 3.61
2946 3321 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2947 3322 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2948 3323 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2949 3324 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2950 3325 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2951 3326 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2952 3327 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2953 3328 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2954 3329 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2955 3330 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2956 3331 6.328148 ACATATACTCCCTCCGTTCCAAAATA 59.672 38.462 0.00 0.00 0.00 1.40
2957 3332 5.132144 ACATATACTCCCTCCGTTCCAAAAT 59.868 40.000 0.00 0.00 0.00 1.82
2958 3333 4.472108 ACATATACTCCCTCCGTTCCAAAA 59.528 41.667 0.00 0.00 0.00 2.44
2959 3334 4.035112 ACATATACTCCCTCCGTTCCAAA 58.965 43.478 0.00 0.00 0.00 3.28
2960 3335 3.649843 ACATATACTCCCTCCGTTCCAA 58.350 45.455 0.00 0.00 0.00 3.53
2961 3336 3.323774 ACATATACTCCCTCCGTTCCA 57.676 47.619 0.00 0.00 0.00 3.53
2962 3337 4.220163 CCTAACATATACTCCCTCCGTTCC 59.780 50.000 0.00 0.00 0.00 3.62
2963 3338 5.075493 TCCTAACATATACTCCCTCCGTTC 58.925 45.833 0.00 0.00 0.00 3.95
2964 3339 5.070823 TCCTAACATATACTCCCTCCGTT 57.929 43.478 0.00 0.00 0.00 4.44
2965 3340 4.736611 TCCTAACATATACTCCCTCCGT 57.263 45.455 0.00 0.00 0.00 4.69
2966 3341 6.415206 TTTTCCTAACATATACTCCCTCCG 57.585 41.667 0.00 0.00 0.00 4.63
3010 3385 6.991938 TCTTTTATGCTTTTGTGTTAGCCAT 58.008 32.000 0.00 0.00 36.56 4.40
3077 3452 7.212976 GCATCCTATCTGACAATCAAGACTAA 58.787 38.462 0.00 0.00 0.00 2.24
3240 3812 7.840797 GCGTGCATGAATAATGTAATGAAAAAC 59.159 33.333 10.93 0.00 38.65 2.43
3301 3873 5.215160 ACAATCTCATTCTTTGTTTCACGC 58.785 37.500 0.00 0.00 29.60 5.34
3306 3878 8.697507 AGTCCTTACAATCTCATTCTTTGTTT 57.302 30.769 0.00 0.00 35.37 2.83
3321 3893 8.716674 ATCCTATTAATACGGAGTCCTTACAA 57.283 34.615 7.77 1.11 43.93 2.41
3409 3981 3.794536 TCGAAAATTTGAAAGCGTCTCG 58.205 40.909 0.00 0.00 0.00 4.04
3423 4868 5.066505 ACAAACTGAGCAAGAACTCGAAAAT 59.933 36.000 0.00 0.00 39.68 1.82
3471 4916 1.203237 TGAGGCCTTTCATCGGATCA 58.797 50.000 6.77 0.00 0.00 2.92
3476 4921 0.933097 CGTCATGAGGCCTTTCATCG 59.067 55.000 6.77 6.45 35.67 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.