Multiple sequence alignment - TraesCS3B01G207500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G207500 chr3B 100.000 5743 0 0 1 5743 243236914 243242656 0.000000e+00 10606.0
1 TraesCS3B01G207500 chr3B 77.105 380 55 21 5238 5594 776098311 776098681 2.110000e-44 191.0
2 TraesCS3B01G207500 chr3A 93.364 2426 72 21 429 2769 200814912 200812491 0.000000e+00 3506.0
3 TraesCS3B01G207500 chr3A 95.207 1523 56 9 3847 5358 200811779 200810263 0.000000e+00 2392.0
4 TraesCS3B01G207500 chr3A 95.152 722 30 5 2873 3591 200812492 200811773 0.000000e+00 1134.0
5 TraesCS3B01G207500 chr3A 89.752 322 17 5 1 311 200821817 200821501 1.160000e-106 398.0
6 TraesCS3B01G207500 chr3A 96.947 131 3 1 315 445 200821450 200821321 9.690000e-53 219.0
7 TraesCS3B01G207500 chr3D 94.075 2346 69 16 493 2769 168183663 168186007 0.000000e+00 3498.0
8 TraesCS3B01G207500 chr3D 96.450 1324 31 8 3847 5166 168186988 168188299 0.000000e+00 2170.0
9 TraesCS3B01G207500 chr3D 93.807 436 21 5 3160 3591 168186561 168186994 0.000000e+00 651.0
10 TraesCS3B01G207500 chr3D 95.238 294 10 3 2873 3163 168186006 168186298 4.050000e-126 462.0
11 TraesCS3B01G207500 chr3D 89.506 324 18 5 1 313 168172685 168173003 4.170000e-106 396.0
12 TraesCS3B01G207500 chr3D 93.893 262 15 1 3591 3852 603709279 603709019 1.500000e-105 394.0
13 TraesCS3B01G207500 chr3D 85.207 338 38 10 5406 5740 168189902 168190230 2.560000e-88 337.0
14 TraesCS3B01G207500 chr3D 92.593 189 8 2 312 494 168173058 168173246 3.410000e-67 267.0
15 TraesCS3B01G207500 chr3D 83.613 238 33 6 2437 2672 590501000 590501233 9.690000e-53 219.0
16 TraesCS3B01G207500 chr3D 83.333 66 8 2 168 233 278306915 278306977 2.240000e-04 58.4
17 TraesCS3B01G207500 chr1B 94.340 265 15 0 3588 3852 642774643 642774379 1.930000e-109 407.0
18 TraesCS3B01G207500 chr1B 92.336 274 19 2 3580 3852 505094203 505094475 6.980000e-104 388.0
19 TraesCS3B01G207500 chr1B 91.228 114 4 2 2766 2875 463525513 463525402 3.580000e-32 150.0
20 TraesCS3B01G207500 chr1B 85.496 131 8 6 2756 2884 638936132 638936011 6.040000e-25 126.0
21 TraesCS3B01G207500 chr6D 94.340 265 14 1 3588 3852 94757444 94757181 6.930000e-109 405.0
22 TraesCS3B01G207500 chr6D 84.000 225 34 2 2452 2675 123159194 123158971 1.250000e-51 215.0
23 TraesCS3B01G207500 chr6D 89.167 120 5 5 2761 2875 81224670 81224786 6.000000e-30 143.0
24 TraesCS3B01G207500 chr6A 94.007 267 14 2 3588 3853 527649083 527648818 2.490000e-108 403.0
25 TraesCS3B01G207500 chr6A 87.037 54 3 4 166 217 447428055 447428004 2.240000e-04 58.4
26 TraesCS3B01G207500 chr6A 87.755 49 5 1 168 216 410222754 410222801 8.040000e-04 56.5
27 TraesCS3B01G207500 chr6A 100.000 28 0 0 190 217 509827250 509827277 1.000000e-02 52.8
28 TraesCS3B01G207500 chr6A 86.000 50 6 1 168 217 574987823 574987775 1.000000e-02 52.8
29 TraesCS3B01G207500 chr1D 94.007 267 15 1 3587 3853 401204571 401204836 2.490000e-108 403.0
30 TraesCS3B01G207500 chr1D 88.235 238 24 4 2437 2672 367846146 367846381 1.220000e-71 281.0
31 TraesCS3B01G207500 chr1D 84.681 235 33 3 2441 2673 423862137 423861904 1.240000e-56 231.0
32 TraesCS3B01G207500 chr1D 82.857 245 38 3 2437 2678 253201889 253201646 3.480000e-52 217.0
33 TraesCS3B01G207500 chr1D 89.908 109 7 3 2768 2874 418018083 418017977 2.790000e-28 137.0
34 TraesCS3B01G207500 chr1D 84.211 57 7 2 162 217 411990101 411990046 3.000000e-03 54.7
35 TraesCS3B01G207500 chr1D 92.105 38 1 2 189 226 225989744 225989709 1.000000e-02 52.8
36 TraesCS3B01G207500 chr1D 86.000 50 6 1 168 217 448543379 448543331 1.000000e-02 52.8
37 TraesCS3B01G207500 chr7A 93.585 265 16 1 3588 3852 730602989 730603252 1.500000e-105 394.0
38 TraesCS3B01G207500 chr7A 92.937 269 17 2 3585 3852 679761203 679761470 1.940000e-104 390.0
39 TraesCS3B01G207500 chr2A 92.419 277 17 4 3579 3852 575349295 575349020 5.390000e-105 392.0
40 TraesCS3B01G207500 chr1A 84.874 238 34 2 2441 2676 520343755 520343518 7.440000e-59 239.0
41 TraesCS3B01G207500 chr1A 100.000 29 0 0 188 216 81730457 81730485 3.000000e-03 54.7
42 TraesCS3B01G207500 chr1A 86.000 50 5 2 168 216 137424041 137424089 1.000000e-02 52.8
43 TraesCS3B01G207500 chr2B 79.265 381 38 24 5247 5599 442300636 442300269 1.610000e-55 228.0
44 TraesCS3B01G207500 chr2B 89.815 108 7 4 2768 2874 406889380 406889484 1.000000e-27 135.0
45 TraesCS3B01G207500 chr6B 83.913 230 36 1 2443 2671 583282591 583282362 9.690000e-53 219.0
46 TraesCS3B01G207500 chr6B 86.000 50 6 1 168 217 274437895 274437847 1.000000e-02 52.8
47 TraesCS3B01G207500 chr5A 79.801 302 40 11 5310 5598 227964689 227964982 3.510000e-47 200.0
48 TraesCS3B01G207500 chr5A 88.000 50 4 2 168 216 607116652 607116604 2.240000e-04 58.4
49 TraesCS3B01G207500 chr5A 92.105 38 3 0 5599 5636 703244611 703244574 3.000000e-03 54.7
50 TraesCS3B01G207500 chr4B 80.252 238 31 6 5301 5524 439317187 439317422 1.280000e-36 165.0
51 TraesCS3B01G207500 chr4B 88.000 50 5 1 168 217 590118558 590118606 2.240000e-04 58.4
52 TraesCS3B01G207500 chr7D 77.857 280 46 12 5241 5510 95968142 95967869 5.960000e-35 159.0
53 TraesCS3B01G207500 chr7D 77.500 280 45 14 5242 5510 95995896 95995624 9.970000e-33 152.0
54 TraesCS3B01G207500 chr7D 86.538 52 4 3 168 218 65203685 65203636 3.000000e-03 54.7
55 TraesCS3B01G207500 chr5B 89.916 119 3 6 2768 2881 298537907 298537793 1.670000e-30 145.0
56 TraesCS3B01G207500 chr4A 90.826 109 4 3 2767 2874 737485767 737485664 2.160000e-29 141.0
57 TraesCS3B01G207500 chr4A 89.815 108 7 2 2767 2874 737485663 737485766 1.000000e-27 135.0
58 TraesCS3B01G207500 chr4A 86.000 50 6 1 168 217 143964206 143964158 1.000000e-02 52.8
59 TraesCS3B01G207500 chr4D 89.189 111 7 4 2767 2874 362785337 362785445 3.610000e-27 134.0
60 TraesCS3B01G207500 chr4D 94.737 38 2 0 5599 5636 506898067 506898030 6.210000e-05 60.2
61 TraesCS3B01G207500 chr4D 86.000 50 5 2 168 216 388420387 388420435 1.000000e-02 52.8
62 TraesCS3B01G207500 chr2D 80.435 184 24 8 5414 5595 462192119 462191946 4.670000e-26 130.0
63 TraesCS3B01G207500 chr2D 88.000 50 4 2 168 216 241522493 241522541 2.240000e-04 58.4
64 TraesCS3B01G207500 chr2D 88.000 50 4 2 168 216 244264729 244264777 2.240000e-04 58.4
65 TraesCS3B01G207500 chr7B 74.121 398 64 20 5249 5610 262000107 262000501 1.680000e-25 128.0
66 TraesCS3B01G207500 chr5D 100.000 28 0 0 190 217 313673550 313673577 1.000000e-02 52.8
67 TraesCS3B01G207500 chr5D 86.000 50 5 2 168 216 501943782 501943830 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G207500 chr3B 243236914 243242656 5742 False 10606.0 10606 100.000000 1 5743 1 chr3B.!!$F1 5742
1 TraesCS3B01G207500 chr3A 200810263 200814912 4649 True 2344.0 3506 94.574333 429 5358 3 chr3A.!!$R1 4929
2 TraesCS3B01G207500 chr3D 168183663 168190230 6567 False 1423.6 3498 92.955400 493 5740 5 chr3D.!!$F4 5247
3 TraesCS3B01G207500 chr3D 168172685 168173246 561 False 331.5 396 91.049500 1 494 2 chr3D.!!$F3 493

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
506 580 0.542467 TGATGTTGGCCATGCACCTT 60.542 50.0 6.09 0.0 32.56 3.50 F
920 1003 0.684479 TCTCGACCTCACATCCCCTG 60.684 60.0 0.00 0.0 0.00 4.45 F
1627 1728 0.712222 GGTAGCGTTTTCGTCTTCCG 59.288 55.0 0.00 0.0 46.03 4.30 F
2782 2955 2.019807 AAACTACTCCCTCCGTTCCA 57.980 50.0 0.00 0.0 0.00 3.53 F
3600 4047 0.106116 AGTGGATACTCCCTCCGTCC 60.106 60.0 0.00 0.0 35.03 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1405 1506 0.038159 GTAGAACACCTGCAGAGCGT 60.038 55.000 17.39 6.02 0.0 5.07 R
2858 3031 1.006758 ACTCATACTCCCTCCGTTCCA 59.993 52.381 0.00 0.00 0.0 3.53 R
3591 4038 0.977395 ACTCTTTCAAGGACGGAGGG 59.023 55.000 0.00 0.00 0.0 4.30 R
3838 4285 0.535797 CCAAAGTACTCCCTCCGTCC 59.464 60.000 0.00 0.00 0.0 4.79 R
5440 7306 1.205893 GGACATCCGAGGAGATATGGC 59.794 57.143 0.00 0.00 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.984161 CACAACGCAAGGATTCAGATTTTT 59.016 37.500 0.00 0.00 46.39 1.94
53 54 6.308371 TCCTCAAATTGTCGGTTTTAACTC 57.692 37.500 0.00 0.00 0.00 3.01
54 55 5.239963 TCCTCAAATTGTCGGTTTTAACTCC 59.760 40.000 0.00 0.00 0.00 3.85
61 62 3.989167 TGTCGGTTTTAACTCCATACGTG 59.011 43.478 0.00 0.00 0.00 4.49
62 63 2.995258 TCGGTTTTAACTCCATACGTGC 59.005 45.455 0.00 0.00 0.00 5.34
64 65 3.075884 GGTTTTAACTCCATACGTGCCA 58.924 45.455 0.00 0.00 0.00 4.92
66 67 4.157105 GGTTTTAACTCCATACGTGCCAAT 59.843 41.667 0.00 0.00 0.00 3.16
67 68 5.354792 GGTTTTAACTCCATACGTGCCAATA 59.645 40.000 0.00 0.00 0.00 1.90
106 109 2.352617 CGTACAAAGTACCCCGTAGCAA 60.353 50.000 2.06 0.00 0.00 3.91
123 126 1.798813 GCAACGCATGAGCAATTACCC 60.799 52.381 0.00 0.00 42.27 3.69
179 184 2.672961 TTCGATTCCTCATGCGAAGT 57.327 45.000 0.00 0.00 37.77 3.01
227 232 4.254492 GTCATCACCTTTCCTCAAGTACC 58.746 47.826 0.00 0.00 0.00 3.34
254 259 9.214953 CGCTATTTAGAGCAAGTTTAGAATTTG 57.785 33.333 0.00 0.00 42.99 2.32
265 270 7.538575 CAAGTTTAGAATTTGAGGTACCCATG 58.461 38.462 8.74 0.00 0.00 3.66
288 300 9.219603 CATGTATGAACAAGTTTTCCTCTCTTA 57.780 33.333 0.00 0.00 39.58 2.10
319 387 5.536161 TCTGCTTCTTCCTTGCTATGTTTTT 59.464 36.000 0.00 0.00 0.00 1.94
325 393 7.072177 TCTTCCTTGCTATGTTTTTCGTATG 57.928 36.000 0.00 0.00 0.00 2.39
330 398 6.961554 CCTTGCTATGTTTTTCGTATGTCTTC 59.038 38.462 0.00 0.00 0.00 2.87
336 404 7.687941 ATGTTTTTCGTATGTCTTCCTCAAT 57.312 32.000 0.00 0.00 0.00 2.57
351 419 3.076621 CCTCAATATACCATGCACGCAT 58.923 45.455 0.00 0.00 37.08 4.73
494 568 2.995466 ATGGAAACGCTGTGATGTTG 57.005 45.000 0.00 0.00 0.00 3.33
506 580 0.542467 TGATGTTGGCCATGCACCTT 60.542 50.000 6.09 0.00 32.56 3.50
840 923 2.288030 CCACGAGTCGGTGACTTTAAGT 60.288 50.000 18.30 0.00 43.53 2.24
852 935 3.813166 TGACTTTAAGTGGCCGAGAAAAG 59.187 43.478 0.93 15.15 0.00 2.27
920 1003 0.684479 TCTCGACCTCACATCCCCTG 60.684 60.000 0.00 0.00 0.00 4.45
1317 1412 2.408241 GGAGCTACGCCTCGACACT 61.408 63.158 0.00 0.00 32.57 3.55
1356 1451 6.540914 CCTCTCCACGGCTAATTTATTTAACA 59.459 38.462 0.00 0.00 0.00 2.41
1365 1460 6.037830 GGCTAATTTATTTAACACTCGCTGGA 59.962 38.462 0.00 0.00 0.00 3.86
1405 1506 1.275291 CCGTTGGCTCTCTGTTCCTTA 59.725 52.381 0.00 0.00 0.00 2.69
1410 1511 1.470112 GGCTCTCTGTTCCTTACGCTC 60.470 57.143 0.00 0.00 0.00 5.03
1497 1598 6.017357 ACGTTCCTGTGGAATTTCTAGTTTTC 60.017 38.462 2.17 0.00 44.04 2.29
1498 1599 6.567891 CGTTCCTGTGGAATTTCTAGTTTTCC 60.568 42.308 2.17 11.67 44.04 3.13
1499 1600 5.947663 TCCTGTGGAATTTCTAGTTTTCCA 58.052 37.500 15.26 15.26 45.00 3.53
1627 1728 0.712222 GGTAGCGTTTTCGTCTTCCG 59.288 55.000 0.00 0.00 46.03 4.30
1680 1782 2.070783 TCGTATGTCAAAAAGGTCCGC 58.929 47.619 0.00 0.00 0.00 5.54
1903 2006 8.664669 TTTCTAGATTTTGGCTTCCCTTAATT 57.335 30.769 0.00 0.00 0.00 1.40
2043 2149 7.944729 ATTGGCACTTAACTTGTTCATAGAT 57.055 32.000 0.00 0.00 0.00 1.98
2184 2302 9.419297 GTGTTTTAGTAAATTGATTTTCCCTCC 57.581 33.333 0.00 0.00 0.00 4.30
2424 2558 3.995199 TGCTACTGACTCTTTGTCCTTG 58.005 45.455 0.00 0.00 44.75 3.61
2439 2592 6.823286 TTGTCCTTGATAATACTCCATCCA 57.177 37.500 0.00 0.00 0.00 3.41
2526 2698 8.800231 TGAACATTTACAACATTGAAGATGTG 57.200 30.769 0.00 0.00 31.80 3.21
2531 2703 6.707440 TTACAACATTGAAGATGTGTGGTT 57.293 33.333 0.00 0.00 32.54 3.67
2583 2755 9.599322 GGTGATATTGATTTCGTATTGTGAATC 57.401 33.333 0.00 0.00 0.00 2.52
2736 2909 4.941263 TGTTTGTCCCTTTATCGGAATCTG 59.059 41.667 0.00 0.00 0.00 2.90
2750 2923 3.191162 CGGAATCTGCTGGATTTGTTTGA 59.809 43.478 6.87 0.00 43.90 2.69
2751 2924 4.488879 GGAATCTGCTGGATTTGTTTGAC 58.511 43.478 6.87 0.00 43.90 3.18
2767 2940 6.671614 TGTTTGACGATGTTACTGAAAACT 57.328 33.333 0.00 0.00 0.00 2.66
2768 2941 7.773864 TGTTTGACGATGTTACTGAAAACTA 57.226 32.000 0.00 0.00 0.00 2.24
2769 2942 7.623770 TGTTTGACGATGTTACTGAAAACTAC 58.376 34.615 0.00 0.00 0.00 2.73
2770 2943 7.493320 TGTTTGACGATGTTACTGAAAACTACT 59.507 33.333 0.00 0.00 0.00 2.57
2771 2944 7.633361 TTGACGATGTTACTGAAAACTACTC 57.367 36.000 0.00 0.00 0.00 2.59
2772 2945 6.154445 TGACGATGTTACTGAAAACTACTCC 58.846 40.000 0.00 0.00 0.00 3.85
2773 2946 5.476614 ACGATGTTACTGAAAACTACTCCC 58.523 41.667 0.00 0.00 0.00 4.30
2774 2947 5.245526 ACGATGTTACTGAAAACTACTCCCT 59.754 40.000 0.00 0.00 0.00 4.20
2775 2948 5.805994 CGATGTTACTGAAAACTACTCCCTC 59.194 44.000 0.00 0.00 0.00 4.30
2776 2949 5.479124 TGTTACTGAAAACTACTCCCTCC 57.521 43.478 0.00 0.00 0.00 4.30
2777 2950 4.021719 TGTTACTGAAAACTACTCCCTCCG 60.022 45.833 0.00 0.00 0.00 4.63
2778 2951 2.606378 ACTGAAAACTACTCCCTCCGT 58.394 47.619 0.00 0.00 0.00 4.69
2779 2952 2.970640 ACTGAAAACTACTCCCTCCGTT 59.029 45.455 0.00 0.00 0.00 4.44
2780 2953 3.006644 ACTGAAAACTACTCCCTCCGTTC 59.993 47.826 0.00 0.00 0.00 3.95
2781 2954 2.301009 TGAAAACTACTCCCTCCGTTCC 59.699 50.000 0.00 0.00 0.00 3.62
2782 2955 2.019807 AAACTACTCCCTCCGTTCCA 57.980 50.000 0.00 0.00 0.00 3.53
2783 2956 2.019807 AACTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
2784 2957 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2785 2958 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
2786 2959 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
2787 2960 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
2788 2961 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2789 2962 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2790 2963 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2791 2964 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2792 2965 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2793 2966 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2794 2967 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2795 2968 5.186198 CCTCCGTTCCAAAATAGATGACTT 58.814 41.667 0.00 0.00 0.00 3.01
2796 2969 6.346096 CCTCCGTTCCAAAATAGATGACTTA 58.654 40.000 0.00 0.00 0.00 2.24
2797 2970 6.821665 CCTCCGTTCCAAAATAGATGACTTAA 59.178 38.462 0.00 0.00 0.00 1.85
2798 2971 7.201617 CCTCCGTTCCAAAATAGATGACTTAAC 60.202 40.741 0.00 0.00 0.00 2.01
2799 2972 7.391620 TCCGTTCCAAAATAGATGACTTAACT 58.608 34.615 0.00 0.00 0.00 2.24
2800 2973 7.881232 TCCGTTCCAAAATAGATGACTTAACTT 59.119 33.333 0.00 0.00 0.00 2.66
2801 2974 8.512138 CCGTTCCAAAATAGATGACTTAACTTT 58.488 33.333 0.00 0.00 0.00 2.66
2802 2975 9.329913 CGTTCCAAAATAGATGACTTAACTTTG 57.670 33.333 0.00 0.00 0.00 2.77
2861 3034 9.349713 ACAAAGTGTTGAGTTATCTATTTTGGA 57.650 29.630 0.00 0.00 38.20 3.53
2864 3037 8.029642 AGTGTTGAGTTATCTATTTTGGAACG 57.970 34.615 0.00 0.00 0.00 3.95
2865 3038 7.119262 AGTGTTGAGTTATCTATTTTGGAACGG 59.881 37.037 0.00 0.00 0.00 4.44
2866 3039 7.118680 GTGTTGAGTTATCTATTTTGGAACGGA 59.881 37.037 0.00 0.00 0.00 4.69
2867 3040 7.333423 TGTTGAGTTATCTATTTTGGAACGGAG 59.667 37.037 0.00 0.00 0.00 4.63
2868 3041 6.346096 TGAGTTATCTATTTTGGAACGGAGG 58.654 40.000 0.00 0.00 0.00 4.30
2869 3042 5.681639 AGTTATCTATTTTGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2870 3043 5.427481 AGTTATCTATTTTGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2871 3044 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2906 3079 6.478512 ACCCTGAATGTATTTGTTGTTGTT 57.521 33.333 0.00 0.00 0.00 2.83
3027 3201 7.600752 GCCTGAAATCATATAACTACAGAGGAC 59.399 40.741 0.00 0.00 0.00 3.85
3199 3643 8.795786 TGTTGCTTTATTGACTTATTGTGTTC 57.204 30.769 0.00 0.00 0.00 3.18
3262 3706 3.199946 TCTCCTAAATGGCTCCGAACAAT 59.800 43.478 0.00 0.00 35.26 2.71
3468 3914 3.643792 AGCATAGTTATTTCCGCCTCTCT 59.356 43.478 0.00 0.00 0.00 3.10
3484 3930 7.039882 CCGCCTCTCTAGTGAAATTAAACTTA 58.960 38.462 0.00 0.00 0.00 2.24
3545 3991 2.738314 TCACATGTCTCAGCAAACATCG 59.262 45.455 0.00 0.00 33.92 3.84
3591 4038 8.564574 TGTACATTTGTTTCAAAGTGGATACTC 58.435 33.333 0.00 0.00 35.69 2.59
3592 4039 6.981722 ACATTTGTTTCAAAGTGGATACTCC 58.018 36.000 1.67 0.00 35.69 3.85
3593 4040 6.015434 ACATTTGTTTCAAAGTGGATACTCCC 60.015 38.462 1.67 0.00 35.69 4.30
3594 4041 4.993705 TGTTTCAAAGTGGATACTCCCT 57.006 40.909 0.00 0.00 35.69 4.20
3595 4042 4.906618 TGTTTCAAAGTGGATACTCCCTC 58.093 43.478 0.00 0.00 35.69 4.30
3596 4043 4.262617 GTTTCAAAGTGGATACTCCCTCC 58.737 47.826 0.00 0.00 35.69 4.30
3597 4044 2.108168 TCAAAGTGGATACTCCCTCCG 58.892 52.381 0.00 0.00 35.69 4.63
3598 4045 1.831736 CAAAGTGGATACTCCCTCCGT 59.168 52.381 0.00 0.00 35.69 4.69
3599 4046 1.777941 AAGTGGATACTCCCTCCGTC 58.222 55.000 0.00 0.00 35.69 4.79
3600 4047 0.106116 AGTGGATACTCCCTCCGTCC 60.106 60.000 0.00 0.00 35.03 4.79
3601 4048 0.106116 GTGGATACTCCCTCCGTCCT 60.106 60.000 0.00 0.00 35.03 3.85
3602 4049 0.635009 TGGATACTCCCTCCGTCCTT 59.365 55.000 0.00 0.00 35.03 3.36
3603 4050 1.041437 GGATACTCCCTCCGTCCTTG 58.959 60.000 0.00 0.00 0.00 3.61
3604 4051 1.411216 GGATACTCCCTCCGTCCTTGA 60.411 57.143 0.00 0.00 0.00 3.02
3605 4052 2.385803 GATACTCCCTCCGTCCTTGAA 58.614 52.381 0.00 0.00 0.00 2.69
3606 4053 2.314071 TACTCCCTCCGTCCTTGAAA 57.686 50.000 0.00 0.00 0.00 2.69
3607 4054 0.977395 ACTCCCTCCGTCCTTGAAAG 59.023 55.000 0.00 0.00 0.00 2.62
3608 4055 1.267121 CTCCCTCCGTCCTTGAAAGA 58.733 55.000 0.00 0.00 0.00 2.52
3609 4056 1.205893 CTCCCTCCGTCCTTGAAAGAG 59.794 57.143 0.00 0.00 0.00 2.85
3610 4057 0.977395 CCCTCCGTCCTTGAAAGAGT 59.023 55.000 0.00 0.00 0.00 3.24
3611 4058 1.338200 CCCTCCGTCCTTGAAAGAGTG 60.338 57.143 0.00 0.00 0.00 3.51
3612 4059 1.344763 CCTCCGTCCTTGAAAGAGTGT 59.655 52.381 0.00 0.00 0.00 3.55
3613 4060 2.561419 CCTCCGTCCTTGAAAGAGTGTA 59.439 50.000 0.00 0.00 0.00 2.90
3614 4061 3.576648 CTCCGTCCTTGAAAGAGTGTAC 58.423 50.000 0.00 0.00 0.00 2.90
3615 4062 3.228453 TCCGTCCTTGAAAGAGTGTACT 58.772 45.455 0.00 0.00 0.00 2.73
3616 4063 3.640029 TCCGTCCTTGAAAGAGTGTACTT 59.360 43.478 0.00 0.00 0.00 2.24
3617 4064 3.988517 CCGTCCTTGAAAGAGTGTACTTC 59.011 47.826 0.00 0.00 0.00 3.01
3618 4065 3.988517 CGTCCTTGAAAGAGTGTACTTCC 59.011 47.826 0.00 0.00 0.00 3.46
3619 4066 4.500887 CGTCCTTGAAAGAGTGTACTTCCA 60.501 45.833 0.00 0.00 0.00 3.53
3620 4067 5.365619 GTCCTTGAAAGAGTGTACTTCCAA 58.634 41.667 0.00 0.00 0.00 3.53
3621 4068 5.236695 GTCCTTGAAAGAGTGTACTTCCAAC 59.763 44.000 0.00 0.00 0.00 3.77
3622 4069 5.130477 TCCTTGAAAGAGTGTACTTCCAACT 59.870 40.000 0.00 0.00 0.00 3.16
3623 4070 5.823045 CCTTGAAAGAGTGTACTTCCAACTT 59.177 40.000 0.00 0.00 0.00 2.66
3624 4071 6.318900 CCTTGAAAGAGTGTACTTCCAACTTT 59.681 38.462 0.00 0.00 0.00 2.66
3625 4072 6.677781 TGAAAGAGTGTACTTCCAACTTTG 57.322 37.500 0.00 0.00 0.00 2.77
3626 4073 6.177610 TGAAAGAGTGTACTTCCAACTTTGT 58.822 36.000 0.00 0.00 0.00 2.83
3627 4074 6.657541 TGAAAGAGTGTACTTCCAACTTTGTT 59.342 34.615 0.00 0.00 0.00 2.83
3628 4075 6.436843 AAGAGTGTACTTCCAACTTTGTTG 57.563 37.500 3.69 3.69 0.00 3.33
3629 4076 4.881850 AGAGTGTACTTCCAACTTTGTTGG 59.118 41.667 19.97 19.97 40.87 3.77
3630 4077 4.850680 AGTGTACTTCCAACTTTGTTGGA 58.149 39.130 23.38 23.38 46.08 3.53
3638 4085 5.930837 TCCAACTTTGTTGGAAAGTCAAT 57.069 34.783 24.52 0.00 44.90 2.57
3639 4086 6.293004 TCCAACTTTGTTGGAAAGTCAATT 57.707 33.333 24.52 0.00 44.90 2.32
3640 4087 6.706295 TCCAACTTTGTTGGAAAGTCAATTT 58.294 32.000 24.52 0.00 44.90 1.82
3641 4088 7.164803 TCCAACTTTGTTGGAAAGTCAATTTT 58.835 30.769 24.52 0.00 44.90 1.82
3642 4089 7.663493 TCCAACTTTGTTGGAAAGTCAATTTTT 59.337 29.630 24.52 0.00 44.90 1.94
3689 4136 7.095695 ACAATAGTACACCAACATTTATGCC 57.904 36.000 0.00 0.00 0.00 4.40
3690 4137 6.661377 ACAATAGTACACCAACATTTATGCCA 59.339 34.615 0.00 0.00 0.00 4.92
3691 4138 7.341769 ACAATAGTACACCAACATTTATGCCAT 59.658 33.333 0.00 0.00 0.00 4.40
3692 4139 5.835113 AGTACACCAACATTTATGCCATC 57.165 39.130 0.00 0.00 0.00 3.51
3693 4140 5.260424 AGTACACCAACATTTATGCCATCA 58.740 37.500 0.00 0.00 0.00 3.07
3694 4141 5.714333 AGTACACCAACATTTATGCCATCAA 59.286 36.000 0.00 0.00 0.00 2.57
3695 4142 5.480642 ACACCAACATTTATGCCATCAAA 57.519 34.783 0.00 0.00 0.00 2.69
3696 4143 6.052405 ACACCAACATTTATGCCATCAAAT 57.948 33.333 0.00 0.00 0.00 2.32
3697 4144 6.474630 ACACCAACATTTATGCCATCAAATT 58.525 32.000 0.00 0.00 0.00 1.82
3698 4145 7.619050 ACACCAACATTTATGCCATCAAATTA 58.381 30.769 0.00 0.00 0.00 1.40
3699 4146 7.765360 ACACCAACATTTATGCCATCAAATTAG 59.235 33.333 0.00 0.00 0.00 1.73
3700 4147 7.765360 CACCAACATTTATGCCATCAAATTAGT 59.235 33.333 0.00 0.00 0.00 2.24
3701 4148 8.976353 ACCAACATTTATGCCATCAAATTAGTA 58.024 29.630 0.00 0.00 0.00 1.82
3702 4149 9.467258 CCAACATTTATGCCATCAAATTAGTAG 57.533 33.333 0.00 0.00 0.00 2.57
3703 4150 8.971321 CAACATTTATGCCATCAAATTAGTAGC 58.029 33.333 0.00 0.00 0.00 3.58
3704 4151 8.236585 ACATTTATGCCATCAAATTAGTAGCA 57.763 30.769 0.00 0.00 0.00 3.49
3705 4152 8.863086 ACATTTATGCCATCAAATTAGTAGCAT 58.137 29.630 0.00 0.00 41.89 3.79
3706 4153 9.701098 CATTTATGCCATCAAATTAGTAGCATT 57.299 29.630 0.00 0.00 39.89 3.56
3709 4156 6.882610 TGCCATCAAATTAGTAGCATTAGG 57.117 37.500 0.00 0.00 0.00 2.69
3710 4157 6.364701 TGCCATCAAATTAGTAGCATTAGGT 58.635 36.000 0.00 0.00 0.00 3.08
3711 4158 6.833416 TGCCATCAAATTAGTAGCATTAGGTT 59.167 34.615 0.00 0.00 0.00 3.50
3712 4159 7.013274 TGCCATCAAATTAGTAGCATTAGGTTC 59.987 37.037 0.00 0.00 0.00 3.62
3713 4160 7.013274 GCCATCAAATTAGTAGCATTAGGTTCA 59.987 37.037 0.00 0.00 0.00 3.18
3714 4161 9.071276 CCATCAAATTAGTAGCATTAGGTTCAT 57.929 33.333 0.00 0.00 0.00 2.57
3715 4162 9.888878 CATCAAATTAGTAGCATTAGGTTCATG 57.111 33.333 0.00 0.00 0.00 3.07
3716 4163 9.851686 ATCAAATTAGTAGCATTAGGTTCATGA 57.148 29.630 0.00 0.00 0.00 3.07
3717 4164 9.851686 TCAAATTAGTAGCATTAGGTTCATGAT 57.148 29.630 0.00 0.00 0.00 2.45
3752 4199 9.527157 TTTTCATCATACTCCTATTTGGTTTCA 57.473 29.630 0.00 0.00 37.07 2.69
3753 4200 8.506168 TTCATCATACTCCTATTTGGTTTCAC 57.494 34.615 0.00 0.00 37.07 3.18
3754 4201 7.629157 TCATCATACTCCTATTTGGTTTCACA 58.371 34.615 0.00 0.00 37.07 3.58
3755 4202 8.106462 TCATCATACTCCTATTTGGTTTCACAA 58.894 33.333 0.00 0.00 37.07 3.33
3756 4203 8.739039 CATCATACTCCTATTTGGTTTCACAAA 58.261 33.333 0.00 0.00 43.69 2.83
3758 4205 9.967451 TCATACTCCTATTTGGTTTCACAAATA 57.033 29.630 10.01 10.01 46.18 1.40
3762 4209 9.308000 ACTCCTATTTGGTTTCACAAATATTGA 57.692 29.630 10.65 9.71 46.39 2.57
3783 4230 8.633075 ATTGATATATTTTTGCACAAACTCGG 57.367 30.769 0.00 0.00 0.00 4.63
3784 4231 7.151999 TGATATATTTTTGCACAAACTCGGT 57.848 32.000 0.00 0.00 0.00 4.69
3785 4232 7.247728 TGATATATTTTTGCACAAACTCGGTC 58.752 34.615 0.00 0.00 0.00 4.79
3786 4233 3.791973 ATTTTTGCACAAACTCGGTCA 57.208 38.095 0.00 0.00 0.00 4.02
3787 4234 3.577649 TTTTTGCACAAACTCGGTCAA 57.422 38.095 0.00 0.00 0.00 3.18
3788 4235 3.577649 TTTTGCACAAACTCGGTCAAA 57.422 38.095 0.00 0.00 0.00 2.69
3789 4236 2.553079 TTGCACAAACTCGGTCAAAC 57.447 45.000 0.00 0.00 0.00 2.93
3790 4237 1.745232 TGCACAAACTCGGTCAAACT 58.255 45.000 0.00 0.00 0.00 2.66
3791 4238 2.088423 TGCACAAACTCGGTCAAACTT 58.912 42.857 0.00 0.00 0.00 2.66
3792 4239 2.490115 TGCACAAACTCGGTCAAACTTT 59.510 40.909 0.00 0.00 0.00 2.66
3793 4240 2.851824 GCACAAACTCGGTCAAACTTTG 59.148 45.455 0.00 0.00 0.00 2.77
3794 4241 3.426963 GCACAAACTCGGTCAAACTTTGA 60.427 43.478 0.00 0.00 37.33 2.69
3795 4242 4.728534 CACAAACTCGGTCAAACTTTGAA 58.271 39.130 5.76 0.00 42.15 2.69
3796 4243 5.157781 CACAAACTCGGTCAAACTTTGAAA 58.842 37.500 5.76 0.00 42.15 2.69
3797 4244 5.804979 CACAAACTCGGTCAAACTTTGAAAT 59.195 36.000 5.76 0.00 42.15 2.17
3798 4245 6.970043 CACAAACTCGGTCAAACTTTGAAATA 59.030 34.615 5.76 0.00 42.15 1.40
3799 4246 7.165812 CACAAACTCGGTCAAACTTTGAAATAG 59.834 37.037 5.76 6.32 42.15 1.73
3800 4247 6.937436 AACTCGGTCAAACTTTGAAATAGT 57.063 33.333 5.76 6.86 42.15 2.12
3801 4248 6.937436 ACTCGGTCAAACTTTGAAATAGTT 57.063 33.333 5.76 0.00 42.15 2.24
3802 4249 7.329588 ACTCGGTCAAACTTTGAAATAGTTT 57.670 32.000 5.76 0.00 44.38 2.66
3810 4257 6.650427 AACTTTGAAATAGTTTGACCCTCC 57.350 37.500 0.00 0.00 32.06 4.30
3811 4258 5.701224 ACTTTGAAATAGTTTGACCCTCCA 58.299 37.500 0.00 0.00 0.00 3.86
3812 4259 6.133356 ACTTTGAAATAGTTTGACCCTCCAA 58.867 36.000 0.00 0.00 0.00 3.53
3813 4260 6.040504 ACTTTGAAATAGTTTGACCCTCCAAC 59.959 38.462 0.00 0.00 0.00 3.77
3814 4261 5.055265 TGAAATAGTTTGACCCTCCAACA 57.945 39.130 0.00 0.00 0.00 3.33
3815 4262 5.450453 TGAAATAGTTTGACCCTCCAACAA 58.550 37.500 0.00 0.00 0.00 2.83
3816 4263 5.894393 TGAAATAGTTTGACCCTCCAACAAA 59.106 36.000 0.00 0.00 0.00 2.83
3817 4264 6.040391 TGAAATAGTTTGACCCTCCAACAAAG 59.960 38.462 0.00 0.00 34.86 2.77
3818 4265 3.382083 AGTTTGACCCTCCAACAAAGT 57.618 42.857 0.00 0.00 34.86 2.66
3819 4266 3.708451 AGTTTGACCCTCCAACAAAGTT 58.292 40.909 0.00 0.00 34.79 2.66
3820 4267 3.447229 AGTTTGACCCTCCAACAAAGTTG 59.553 43.478 3.00 3.00 34.79 3.16
3821 4268 2.065899 TGACCCTCCAACAAAGTTGG 57.934 50.000 20.09 20.09 40.87 3.77
3822 4269 1.566703 TGACCCTCCAACAAAGTTGGA 59.433 47.619 25.17 25.17 45.61 3.53
3823 4270 2.024846 TGACCCTCCAACAAAGTTGGAA 60.025 45.455 26.25 12.88 46.85 3.53
3824 4271 2.623416 GACCCTCCAACAAAGTTGGAAG 59.377 50.000 26.25 21.51 46.85 3.46
3825 4272 2.024369 ACCCTCCAACAAAGTTGGAAGT 60.024 45.455 26.25 22.95 46.85 3.01
3826 4273 3.203487 ACCCTCCAACAAAGTTGGAAGTA 59.797 43.478 26.25 9.67 46.85 2.24
3827 4274 3.568430 CCCTCCAACAAAGTTGGAAGTAC 59.432 47.826 26.25 0.00 46.85 2.73
3828 4275 4.204012 CCTCCAACAAAGTTGGAAGTACA 58.796 43.478 26.25 8.75 46.85 2.90
3829 4276 4.036380 CCTCCAACAAAGTTGGAAGTACAC 59.964 45.833 26.25 0.00 46.85 2.90
3830 4277 4.850680 TCCAACAAAGTTGGAAGTACACT 58.149 39.130 24.83 0.00 44.90 3.55
3831 4278 4.879545 TCCAACAAAGTTGGAAGTACACTC 59.120 41.667 24.83 0.00 44.90 3.51
3832 4279 4.881850 CCAACAAAGTTGGAAGTACACTCT 59.118 41.667 21.24 0.00 42.06 3.24
3833 4280 5.357032 CCAACAAAGTTGGAAGTACACTCTT 59.643 40.000 21.24 0.00 42.06 2.85
3834 4281 6.127730 CCAACAAAGTTGGAAGTACACTCTTT 60.128 38.462 21.24 0.00 42.06 2.52
3835 4282 6.679327 ACAAAGTTGGAAGTACACTCTTTC 57.321 37.500 0.00 0.00 0.00 2.62
3836 4283 6.177610 ACAAAGTTGGAAGTACACTCTTTCA 58.822 36.000 0.00 0.00 31.87 2.69
3837 4284 6.657541 ACAAAGTTGGAAGTACACTCTTTCAA 59.342 34.615 0.00 0.00 39.65 2.69
3838 4285 6.927294 AAGTTGGAAGTACACTCTTTCAAG 57.073 37.500 0.00 0.00 41.68 3.02
3839 4286 5.368989 AGTTGGAAGTACACTCTTTCAAGG 58.631 41.667 0.00 0.00 41.68 3.61
3840 4287 5.130477 AGTTGGAAGTACACTCTTTCAAGGA 59.870 40.000 0.00 0.00 41.68 3.36
3841 4288 4.957296 TGGAAGTACACTCTTTCAAGGAC 58.043 43.478 0.00 0.00 30.93 3.85
3842 4289 3.988517 GGAAGTACACTCTTTCAAGGACG 59.011 47.826 0.00 0.00 0.00 4.79
3843 4290 3.662247 AGTACACTCTTTCAAGGACGG 57.338 47.619 0.00 0.00 0.00 4.79
3844 4291 3.228453 AGTACACTCTTTCAAGGACGGA 58.772 45.455 0.00 0.00 0.00 4.69
3845 4292 2.821991 ACACTCTTTCAAGGACGGAG 57.178 50.000 0.00 0.00 0.00 4.63
3846 4293 1.344763 ACACTCTTTCAAGGACGGAGG 59.655 52.381 0.00 0.00 0.00 4.30
3847 4294 0.977395 ACTCTTTCAAGGACGGAGGG 59.023 55.000 0.00 0.00 0.00 4.30
3848 4295 1.267121 CTCTTTCAAGGACGGAGGGA 58.733 55.000 0.00 0.00 0.00 4.20
3849 4296 1.205893 CTCTTTCAAGGACGGAGGGAG 59.794 57.143 0.00 0.00 0.00 4.30
3850 4297 0.977395 CTTTCAAGGACGGAGGGAGT 59.023 55.000 0.00 0.00 0.00 3.85
3851 4298 2.176889 CTTTCAAGGACGGAGGGAGTA 58.823 52.381 0.00 0.00 0.00 2.59
3852 4299 1.553706 TTCAAGGACGGAGGGAGTAC 58.446 55.000 0.00 0.00 0.00 2.73
3853 4300 0.702902 TCAAGGACGGAGGGAGTACT 59.297 55.000 0.00 0.00 33.42 2.73
3854 4301 1.076677 TCAAGGACGGAGGGAGTACTT 59.923 52.381 0.00 0.00 43.07 2.24
3893 4340 1.875157 CGCACATGATCATGGATCCGT 60.875 52.381 33.31 13.52 42.91 4.69
3954 4401 4.225208 GCTTTGCTGTCTTTGCTTCTTAG 58.775 43.478 0.00 0.00 0.00 2.18
4154 4601 1.677052 GACGAAGCTTCCCGACTCTAT 59.323 52.381 20.62 0.00 0.00 1.98
4190 4637 6.480763 TCATCCAAGTCAGGTATAGCAAAAA 58.519 36.000 4.48 0.00 0.00 1.94
4376 4823 1.337387 GCATCTGTACCCGAGGTAGAC 59.663 57.143 3.34 0.00 39.02 2.59
4840 5287 6.055583 CGTAGATCACGCAGTATTAATTCG 57.944 41.667 0.00 0.00 45.03 3.34
5012 5462 6.405508 CGGAGTTAGTTTGAGTAGGATTGCTA 60.406 42.308 0.00 0.00 0.00 3.49
5026 5476 4.286032 AGGATTGCTAGTGTTCTGTGGTAA 59.714 41.667 0.00 0.00 0.00 2.85
5054 5504 2.030540 CAGGCCTCCGCAAATTGATATG 60.031 50.000 0.00 0.00 36.38 1.78
5125 5579 2.568623 AGGCAGTTAACCAAGGTCAG 57.431 50.000 0.88 0.00 0.00 3.51
5136 5590 2.979678 ACCAAGGTCAGGATTGTACTGT 59.020 45.455 0.00 0.00 37.25 3.55
5151 5605 7.985184 GGATTGTACTGTGGAGTGATGTTATAA 59.015 37.037 0.00 0.00 33.21 0.98
5165 5619 7.824779 AGTGATGTTATAACAGGGAAGTTCTTC 59.175 37.037 22.03 11.70 43.04 2.87
5180 5634 7.362747 GGGAAGTTCTTCGATGTACTTTCTCTA 60.363 40.741 20.96 0.00 31.41 2.43
5233 5689 1.417890 AGTGATCTAAATGGGAGGCGG 59.582 52.381 0.00 0.00 0.00 6.13
5234 5690 0.108585 TGATCTAAATGGGAGGCGGC 59.891 55.000 0.00 0.00 0.00 6.53
5238 5694 1.436983 CTAAATGGGAGGCGGCGTTC 61.437 60.000 9.37 6.89 0.00 3.95
5272 5731 5.830991 TGCACCTGAGGTAAACAGTAAATTT 59.169 36.000 2.59 0.00 32.11 1.82
5273 5732 6.149633 GCACCTGAGGTAAACAGTAAATTTG 58.850 40.000 2.59 0.00 32.11 2.32
5335 5805 4.377370 CACATGTGCGGGAAGTCA 57.623 55.556 13.94 0.00 0.00 3.41
5337 5807 1.672356 ACATGTGCGGGAAGTCAGC 60.672 57.895 0.00 0.00 0.00 4.26
5338 5808 1.672030 CATGTGCGGGAAGTCAGCA 60.672 57.895 0.00 0.00 38.71 4.41
5361 5831 6.640907 GCATTAAATTTCGTGGAGTTTGAACT 59.359 34.615 0.00 0.00 43.16 3.01
5375 5845 6.261158 GGAGTTTGAACTTTTCAGTAGCTCTT 59.739 38.462 0.00 0.00 41.38 2.85
5377 5847 8.371770 AGTTTGAACTTTTCAGTAGCTCTTAG 57.628 34.615 0.00 0.00 41.38 2.18
5378 5848 6.787085 TTGAACTTTTCAGTAGCTCTTAGC 57.213 37.500 0.00 0.00 41.38 3.09
5382 5852 7.282224 TGAACTTTTCAGTAGCTCTTAGCAAAA 59.718 33.333 0.00 0.00 38.09 2.44
5424 7290 6.035975 GCTGCAACAAAGTTTACTGTTTTGAT 59.964 34.615 9.07 0.00 33.51 2.57
5425 7291 7.518731 TGCAACAAAGTTTACTGTTTTGATC 57.481 32.000 9.07 0.00 33.51 2.92
5426 7292 7.093354 TGCAACAAAGTTTACTGTTTTGATCA 58.907 30.769 9.07 0.00 33.51 2.92
5478 7346 3.243367 TGTCCGAACAAGCTGAAATTTGG 60.243 43.478 0.00 0.00 30.70 3.28
5482 7350 3.456280 GAACAAGCTGAAATTTGGCACA 58.544 40.909 13.09 0.00 0.00 4.57
5499 7367 3.492309 GGCACAAACATCACACAATGGAA 60.492 43.478 0.00 0.00 0.00 3.53
5575 7443 0.321919 TTCACTGGGTGCAGATGAGC 60.322 55.000 0.00 0.00 32.98 4.26
5576 7444 1.748122 CACTGGGTGCAGATGAGCC 60.748 63.158 0.00 0.00 0.00 4.70
5577 7445 2.124403 CTGGGTGCAGATGAGCCC 60.124 66.667 0.81 0.81 41.42 5.19
5580 7448 2.124403 GGTGCAGATGAGCCCAGG 60.124 66.667 0.00 0.00 0.00 4.45
5583 7451 2.195139 GCAGATGAGCCCAGGCAT 59.805 61.111 12.03 0.00 44.88 4.40
5598 7466 3.125829 CCAGGCATCGAATTGAATATCCG 59.874 47.826 0.00 0.00 0.00 4.18
5599 7467 3.996363 CAGGCATCGAATTGAATATCCGA 59.004 43.478 0.00 0.00 0.00 4.55
5601 7469 4.872691 AGGCATCGAATTGAATATCCGATC 59.127 41.667 6.94 0.00 37.81 3.69
5652 7520 7.666063 GGGAGTACCAATTTCCTACTTAGTA 57.334 40.000 0.00 0.00 39.85 1.82
5653 7521 7.724287 GGGAGTACCAATTTCCTACTTAGTAG 58.276 42.308 12.16 12.16 39.85 2.57
5654 7522 7.201983 GGGAGTACCAATTTCCTACTTAGTAGG 60.202 44.444 27.71 27.71 46.64 3.18
5655 7523 7.562821 GGAGTACCAATTTCCTACTTAGTAGGA 59.437 40.741 30.93 30.93 46.99 2.94
5678 7546 5.083821 AGTACATTTTTACCTGGTGCCAAT 58.916 37.500 10.23 1.61 0.00 3.16
5686 7554 6.426646 TTTACCTGGTGCCAATTTTTACAT 57.573 33.333 10.23 0.00 0.00 2.29
5692 7560 8.598041 ACCTGGTGCCAATTTTTACATTTTATA 58.402 29.630 0.00 0.00 0.00 0.98
5740 7608 4.256110 GGAAAATGCATCCCAAGAAAAGG 58.744 43.478 0.00 0.00 0.00 3.11
5741 7609 3.339253 AAATGCATCCCAAGAAAAGGC 57.661 42.857 0.00 0.00 0.00 4.35
5742 7610 1.941377 ATGCATCCCAAGAAAAGGCA 58.059 45.000 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.548967 AGTTAAAACCGACAATTTGAGGAAAA 58.451 30.769 17.77 7.26 0.00 2.29
28 29 7.102847 AGTTAAAACCGACAATTTGAGGAAA 57.897 32.000 17.77 7.50 0.00 3.13
29 30 6.238814 GGAGTTAAAACCGACAATTTGAGGAA 60.239 38.462 17.77 4.13 0.00 3.36
30 31 5.239963 GGAGTTAAAACCGACAATTTGAGGA 59.760 40.000 17.77 0.00 0.00 3.71
31 32 5.009210 TGGAGTTAAAACCGACAATTTGAGG 59.991 40.000 2.79 8.53 0.00 3.86
42 43 2.094734 GGCACGTATGGAGTTAAAACCG 59.905 50.000 0.00 0.00 0.00 4.44
83 86 0.170116 TACGGGGTACTTTGTACGCG 59.830 55.000 3.53 3.53 43.58 6.01
106 109 1.340017 ACTGGGTAATTGCTCATGCGT 60.340 47.619 0.00 0.00 43.34 5.24
108 111 4.981806 TTTACTGGGTAATTGCTCATGC 57.018 40.909 0.00 0.00 40.20 4.06
161 166 1.926561 CACTTCGCATGAGGAATCGA 58.073 50.000 0.00 0.00 0.00 3.59
178 183 8.139350 ACAACATAAAAGTAAAAGGGTAAGCAC 58.861 33.333 0.00 0.00 0.00 4.40
179 184 8.138712 CACAACATAAAAGTAAAAGGGTAAGCA 58.861 33.333 0.00 0.00 0.00 3.91
227 232 6.903883 TTCTAAACTTGCTCTAAATAGCGG 57.096 37.500 0.00 0.00 45.85 5.52
288 300 5.259632 AGCAAGGAAGAAGCAGATGTTTAT 58.740 37.500 0.00 0.00 0.00 1.40
319 387 7.602753 CATGGTATATTGAGGAAGACATACGA 58.397 38.462 0.00 0.00 0.00 3.43
325 393 4.449068 CGTGCATGGTATATTGAGGAAGAC 59.551 45.833 0.00 0.00 0.00 3.01
330 398 2.493035 TGCGTGCATGGTATATTGAGG 58.507 47.619 8.27 0.00 0.00 3.86
336 404 4.020662 TCCTTGATATGCGTGCATGGTATA 60.021 41.667 17.21 4.62 37.82 1.47
426 494 9.294030 GCTTCAAACATAATTGATTGGTTCTAG 57.706 33.333 0.00 0.00 38.98 2.43
494 568 1.410153 CCTGAAATAAGGTGCATGGCC 59.590 52.381 0.00 0.00 32.17 5.36
506 580 6.436218 GGACCTTTCTAAAAAGCCCTGAAATA 59.564 38.462 0.00 0.00 40.53 1.40
775 858 0.689745 CTATCGGTGGGAAGGGTGGA 60.690 60.000 0.00 0.00 0.00 4.02
824 907 1.270678 GGCCACTTAAAGTCACCGACT 60.271 52.381 0.00 0.00 45.64 4.18
840 923 1.298667 GCTACCCTTTTCTCGGCCA 59.701 57.895 2.24 0.00 0.00 5.36
920 1003 2.238245 TAAACGAAGTCGAGTCGAGC 57.762 50.000 17.12 10.99 45.00 5.03
1405 1506 0.038159 GTAGAACACCTGCAGAGCGT 60.038 55.000 17.39 6.02 0.00 5.07
1410 1511 2.724977 TCGAAGTAGAACACCTGCAG 57.275 50.000 6.78 6.78 0.00 4.41
1498 1599 6.426633 GGGAAATTCTACCACACCAAATTTTG 59.573 38.462 1.99 1.99 31.58 2.44
1499 1600 6.100424 TGGGAAATTCTACCACACCAAATTTT 59.900 34.615 0.00 0.00 31.58 1.82
1627 1728 3.686016 TGAGTTTTAATGGACCAGGAGC 58.314 45.455 0.00 0.00 0.00 4.70
1903 2006 7.107542 ACAGACAGTAAAGGTGAAACTAACAA 58.892 34.615 0.00 0.00 36.74 2.83
2043 2149 5.047566 TCCACAGAAGATTCAAGACCAAA 57.952 39.130 0.00 0.00 0.00 3.28
2169 2287 7.675619 ACATACAAAGAGGAGGGAAAATCAATT 59.324 33.333 0.00 0.00 0.00 2.32
2234 2359 9.813080 GTTCAAGAAAGTACAATTCAGTATCAC 57.187 33.333 12.29 0.99 0.00 3.06
2341 2475 3.814504 ATTTCCTCCATGGTTGTCTGT 57.185 42.857 12.58 0.00 37.07 3.41
2461 2633 9.930693 AAATTTGGTCAAACTTTGTGTAGTTTA 57.069 25.926 1.44 0.00 44.33 2.01
2514 2686 7.718272 ATTTTCAAACCACACATCTTCAATG 57.282 32.000 0.00 0.00 0.00 2.82
2549 2721 5.589855 ACGAAATCAATATCACCAGATGCAA 59.410 36.000 0.00 0.00 35.67 4.08
2557 2729 9.599322 GATTCACAATACGAAATCAATATCACC 57.401 33.333 0.00 0.00 0.00 4.02
2594 2767 8.005466 CGTAAAGTTTGAACGACTTTATAGCAA 58.995 33.333 11.28 0.00 45.80 3.91
2736 2909 3.559238 ACATCGTCAAACAAATCCAGC 57.441 42.857 0.00 0.00 0.00 4.85
2750 2923 5.245526 AGGGAGTAGTTTTCAGTAACATCGT 59.754 40.000 0.00 0.00 0.00 3.73
2751 2924 5.721232 AGGGAGTAGTTTTCAGTAACATCG 58.279 41.667 0.00 0.00 0.00 3.84
2767 2940 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2768 2941 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2769 2942 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2770 2943 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2771 2944 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2772 2945 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2773 2946 7.549488 AGTTAAGTCATCTATTTTGGAACGGAG 59.451 37.037 0.00 0.00 0.00 4.63
2774 2947 7.391620 AGTTAAGTCATCTATTTTGGAACGGA 58.608 34.615 0.00 0.00 0.00 4.69
2775 2948 7.611213 AGTTAAGTCATCTATTTTGGAACGG 57.389 36.000 0.00 0.00 0.00 4.44
2776 2949 9.329913 CAAAGTTAAGTCATCTATTTTGGAACG 57.670 33.333 0.00 0.00 0.00 3.95
2835 3008 9.349713 TCCAAAATAGATAACTCAACACTTTGT 57.650 29.630 0.00 0.00 34.02 2.83
2838 3011 8.504005 CGTTCCAAAATAGATAACTCAACACTT 58.496 33.333 0.00 0.00 0.00 3.16
2839 3012 7.119262 CCGTTCCAAAATAGATAACTCAACACT 59.881 37.037 0.00 0.00 0.00 3.55
2840 3013 7.118680 TCCGTTCCAAAATAGATAACTCAACAC 59.881 37.037 0.00 0.00 0.00 3.32
2841 3014 7.162761 TCCGTTCCAAAATAGATAACTCAACA 58.837 34.615 0.00 0.00 0.00 3.33
2842 3015 7.201617 CCTCCGTTCCAAAATAGATAACTCAAC 60.202 40.741 0.00 0.00 0.00 3.18
2843 3016 6.821665 CCTCCGTTCCAAAATAGATAACTCAA 59.178 38.462 0.00 0.00 0.00 3.02
2844 3017 6.346096 CCTCCGTTCCAAAATAGATAACTCA 58.654 40.000 0.00 0.00 0.00 3.41
2845 3018 5.758784 CCCTCCGTTCCAAAATAGATAACTC 59.241 44.000 0.00 0.00 0.00 3.01
2846 3019 5.427481 TCCCTCCGTTCCAAAATAGATAACT 59.573 40.000 0.00 0.00 0.00 2.24
2847 3020 5.677567 TCCCTCCGTTCCAAAATAGATAAC 58.322 41.667 0.00 0.00 0.00 1.89
2848 3021 5.427481 ACTCCCTCCGTTCCAAAATAGATAA 59.573 40.000 0.00 0.00 0.00 1.75
2849 3022 4.966805 ACTCCCTCCGTTCCAAAATAGATA 59.033 41.667 0.00 0.00 0.00 1.98
2850 3023 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2851 3024 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2852 3025 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2853 3026 4.717778 TCATACTCCCTCCGTTCCAAAATA 59.282 41.667 0.00 0.00 0.00 1.40
2854 3027 3.521937 TCATACTCCCTCCGTTCCAAAAT 59.478 43.478 0.00 0.00 0.00 1.82
2855 3028 2.907696 TCATACTCCCTCCGTTCCAAAA 59.092 45.455 0.00 0.00 0.00 2.44
2856 3029 2.500098 CTCATACTCCCTCCGTTCCAAA 59.500 50.000 0.00 0.00 0.00 3.28
2857 3030 2.108168 CTCATACTCCCTCCGTTCCAA 58.892 52.381 0.00 0.00 0.00 3.53
2858 3031 1.006758 ACTCATACTCCCTCCGTTCCA 59.993 52.381 0.00 0.00 0.00 3.53
2859 3032 1.777941 ACTCATACTCCCTCCGTTCC 58.222 55.000 0.00 0.00 0.00 3.62
2860 3033 3.952967 ACTAACTCATACTCCCTCCGTTC 59.047 47.826 0.00 0.00 0.00 3.95
2861 3034 3.978610 ACTAACTCATACTCCCTCCGTT 58.021 45.455 0.00 0.00 0.00 4.44
2862 3035 3.666345 ACTAACTCATACTCCCTCCGT 57.334 47.619 0.00 0.00 0.00 4.69
2863 3036 3.819902 GGTACTAACTCATACTCCCTCCG 59.180 52.174 0.00 0.00 0.00 4.63
2864 3037 4.140971 AGGGTACTAACTCATACTCCCTCC 60.141 50.000 0.00 0.00 39.68 4.30
2865 3038 4.828387 CAGGGTACTAACTCATACTCCCTC 59.172 50.000 0.00 0.00 41.58 4.30
2866 3039 4.481280 TCAGGGTACTAACTCATACTCCCT 59.519 45.833 0.00 0.00 43.92 4.20
2867 3040 4.801164 TCAGGGTACTAACTCATACTCCC 58.199 47.826 0.00 0.00 0.00 4.30
2868 3041 6.324254 ACATTCAGGGTACTAACTCATACTCC 59.676 42.308 0.00 0.00 0.00 3.85
2869 3042 7.349412 ACATTCAGGGTACTAACTCATACTC 57.651 40.000 0.00 0.00 0.00 2.59
2870 3043 9.435570 AATACATTCAGGGTACTAACTCATACT 57.564 33.333 0.00 0.00 0.00 2.12
2906 3079 5.538053 TGCAATTGAGGACCACAATTAAGAA 59.462 36.000 24.04 9.59 43.22 2.52
3027 3201 3.507622 CCCCTTTCCTCTTGCTTTTAGTG 59.492 47.826 0.00 0.00 0.00 2.74
3172 3614 8.970691 ACACAATAAGTCAATAAAGCAACATC 57.029 30.769 0.00 0.00 0.00 3.06
3205 3649 7.953158 AACTGAATAATGTCGAGGTCATATG 57.047 36.000 0.00 0.00 0.00 1.78
3449 3895 6.069331 TCACTAGAGAGGCGGAAATAACTAT 58.931 40.000 0.00 0.00 0.00 2.12
3460 3906 6.969828 AAGTTTAATTTCACTAGAGAGGCG 57.030 37.500 0.00 0.00 0.00 5.52
3484 3930 4.461081 TGCACTCTTGTTTGTGTTAAAGGT 59.539 37.500 0.00 0.00 36.63 3.50
3545 3991 3.144506 CAGCATATTCCCTCATCCACAC 58.855 50.000 0.00 0.00 0.00 3.82
3591 4038 0.977395 ACTCTTTCAAGGACGGAGGG 59.023 55.000 0.00 0.00 0.00 4.30
3592 4039 1.344763 ACACTCTTTCAAGGACGGAGG 59.655 52.381 0.00 0.00 0.00 4.30
3593 4040 2.821991 ACACTCTTTCAAGGACGGAG 57.178 50.000 0.00 0.00 0.00 4.63
3594 4041 3.228453 AGTACACTCTTTCAAGGACGGA 58.772 45.455 0.00 0.00 0.00 4.69
3595 4042 3.662247 AGTACACTCTTTCAAGGACGG 57.338 47.619 0.00 0.00 0.00 4.79
3596 4043 3.988517 GGAAGTACACTCTTTCAAGGACG 59.011 47.826 0.00 0.00 0.00 4.79
3597 4044 4.957296 TGGAAGTACACTCTTTCAAGGAC 58.043 43.478 0.00 0.00 30.93 3.85
3598 4045 5.130477 AGTTGGAAGTACACTCTTTCAAGGA 59.870 40.000 0.00 0.00 41.68 3.36
3599 4046 5.368989 AGTTGGAAGTACACTCTTTCAAGG 58.631 41.667 0.00 0.00 41.68 3.61
3600 4047 6.927294 AAGTTGGAAGTACACTCTTTCAAG 57.073 37.500 0.00 0.00 41.68 3.02
3601 4048 6.657541 ACAAAGTTGGAAGTACACTCTTTCAA 59.342 34.615 0.00 0.00 39.65 2.69
3602 4049 6.177610 ACAAAGTTGGAAGTACACTCTTTCA 58.822 36.000 0.00 0.00 31.87 2.69
3603 4050 6.679327 ACAAAGTTGGAAGTACACTCTTTC 57.321 37.500 0.00 0.00 0.00 2.62
3604 4051 6.127730 CCAACAAAGTTGGAAGTACACTCTTT 60.128 38.462 21.24 0.00 42.06 2.52
3605 4052 5.357032 CCAACAAAGTTGGAAGTACACTCTT 59.643 40.000 21.24 0.00 42.06 2.85
3606 4053 4.881850 CCAACAAAGTTGGAAGTACACTCT 59.118 41.667 21.24 0.00 42.06 3.24
3607 4054 4.879545 TCCAACAAAGTTGGAAGTACACTC 59.120 41.667 24.83 0.00 44.90 3.51
3608 4055 4.850680 TCCAACAAAGTTGGAAGTACACT 58.149 39.130 24.83 0.00 44.90 3.55
3616 4063 5.930837 ATTGACTTTCCAACAAAGTTGGA 57.069 34.783 23.64 23.64 46.08 3.53
3617 4064 6.983474 AAATTGACTTTCCAACAAAGTTGG 57.017 33.333 20.09 20.09 40.27 3.77
3663 4110 8.846211 GGCATAAATGTTGGTGTACTATTGTAT 58.154 33.333 0.00 0.00 0.00 2.29
3664 4111 7.829706 TGGCATAAATGTTGGTGTACTATTGTA 59.170 33.333 0.00 0.00 0.00 2.41
3665 4112 6.661377 TGGCATAAATGTTGGTGTACTATTGT 59.339 34.615 0.00 0.00 0.00 2.71
3666 4113 7.094508 TGGCATAAATGTTGGTGTACTATTG 57.905 36.000 0.00 0.00 0.00 1.90
3667 4114 7.559533 TGATGGCATAAATGTTGGTGTACTATT 59.440 33.333 0.00 0.00 0.00 1.73
3668 4115 7.059788 TGATGGCATAAATGTTGGTGTACTAT 58.940 34.615 0.00 0.00 0.00 2.12
3669 4116 6.418946 TGATGGCATAAATGTTGGTGTACTA 58.581 36.000 0.00 0.00 0.00 1.82
3670 4117 5.260424 TGATGGCATAAATGTTGGTGTACT 58.740 37.500 0.00 0.00 0.00 2.73
3671 4118 5.574891 TGATGGCATAAATGTTGGTGTAC 57.425 39.130 0.00 0.00 0.00 2.90
3672 4119 6.596309 TTTGATGGCATAAATGTTGGTGTA 57.404 33.333 0.00 0.00 0.00 2.90
3673 4120 5.480642 TTTGATGGCATAAATGTTGGTGT 57.519 34.783 0.00 0.00 0.00 4.16
3674 4121 6.988622 AATTTGATGGCATAAATGTTGGTG 57.011 33.333 0.00 0.00 0.00 4.17
3675 4122 7.850193 ACTAATTTGATGGCATAAATGTTGGT 58.150 30.769 0.00 3.42 0.00 3.67
3676 4123 9.467258 CTACTAATTTGATGGCATAAATGTTGG 57.533 33.333 0.00 2.80 0.00 3.77
3677 4124 8.971321 GCTACTAATTTGATGGCATAAATGTTG 58.029 33.333 0.00 5.40 0.00 3.33
3678 4125 8.694540 TGCTACTAATTTGATGGCATAAATGTT 58.305 29.630 0.00 0.57 0.00 2.71
3679 4126 8.236585 TGCTACTAATTTGATGGCATAAATGT 57.763 30.769 0.00 5.58 0.00 2.71
3680 4127 9.701098 AATGCTACTAATTTGATGGCATAAATG 57.299 29.630 0.00 0.32 37.85 2.32
3683 4130 9.013229 CCTAATGCTACTAATTTGATGGCATAA 57.987 33.333 0.00 0.00 37.85 1.90
3684 4131 8.163408 ACCTAATGCTACTAATTTGATGGCATA 58.837 33.333 0.00 0.00 37.85 3.14
3685 4132 7.006509 ACCTAATGCTACTAATTTGATGGCAT 58.993 34.615 0.00 0.00 40.04 4.40
3686 4133 6.364701 ACCTAATGCTACTAATTTGATGGCA 58.635 36.000 0.00 0.00 0.00 4.92
3687 4134 6.884280 ACCTAATGCTACTAATTTGATGGC 57.116 37.500 0.00 0.00 0.00 4.40
3688 4135 8.450578 TGAACCTAATGCTACTAATTTGATGG 57.549 34.615 0.00 0.00 0.00 3.51
3689 4136 9.888878 CATGAACCTAATGCTACTAATTTGATG 57.111 33.333 0.00 0.00 0.00 3.07
3690 4137 9.851686 TCATGAACCTAATGCTACTAATTTGAT 57.148 29.630 0.00 0.00 0.00 2.57
3691 4138 9.851686 ATCATGAACCTAATGCTACTAATTTGA 57.148 29.630 0.00 0.00 0.00 2.69
3726 4173 9.527157 TGAAACCAAATAGGAGTATGATGAAAA 57.473 29.630 0.00 0.00 41.22 2.29
3727 4174 8.956426 GTGAAACCAAATAGGAGTATGATGAAA 58.044 33.333 0.00 0.00 41.22 2.69
3728 4175 8.106462 TGTGAAACCAAATAGGAGTATGATGAA 58.894 33.333 0.00 0.00 41.22 2.57
3729 4176 7.629157 TGTGAAACCAAATAGGAGTATGATGA 58.371 34.615 0.00 0.00 41.22 2.92
3730 4177 7.864108 TGTGAAACCAAATAGGAGTATGATG 57.136 36.000 0.00 0.00 41.22 3.07
3731 4178 8.877864 TTTGTGAAACCAAATAGGAGTATGAT 57.122 30.769 0.00 0.00 41.22 2.45
3732 4179 8.877864 ATTTGTGAAACCAAATAGGAGTATGA 57.122 30.769 0.00 0.00 41.88 2.15
3736 4183 9.308000 TCAATATTTGTGAAACCAAATAGGAGT 57.692 29.630 10.86 0.00 45.47 3.85
3757 4204 9.729023 CCGAGTTTGTGCAAAAATATATCAATA 57.271 29.630 5.11 0.00 31.33 1.90
3758 4205 8.250332 ACCGAGTTTGTGCAAAAATATATCAAT 58.750 29.630 5.11 0.00 31.33 2.57
3759 4206 7.598278 ACCGAGTTTGTGCAAAAATATATCAA 58.402 30.769 5.11 0.00 31.33 2.57
3760 4207 7.094592 TGACCGAGTTTGTGCAAAAATATATCA 60.095 33.333 5.11 4.10 31.33 2.15
3761 4208 7.247728 TGACCGAGTTTGTGCAAAAATATATC 58.752 34.615 5.11 1.66 31.33 1.63
3762 4209 7.151999 TGACCGAGTTTGTGCAAAAATATAT 57.848 32.000 5.11 0.00 31.33 0.86
3763 4210 6.561737 TGACCGAGTTTGTGCAAAAATATA 57.438 33.333 5.11 0.00 31.33 0.86
3764 4211 5.446143 TGACCGAGTTTGTGCAAAAATAT 57.554 34.783 5.11 0.00 31.33 1.28
3765 4212 4.902443 TGACCGAGTTTGTGCAAAAATA 57.098 36.364 5.11 0.00 31.33 1.40
3766 4213 3.791973 TGACCGAGTTTGTGCAAAAAT 57.208 38.095 5.11 0.00 31.33 1.82
3767 4214 3.577649 TTGACCGAGTTTGTGCAAAAA 57.422 38.095 0.00 0.00 31.33 1.94
3768 4215 3.057174 AGTTTGACCGAGTTTGTGCAAAA 60.057 39.130 0.00 0.00 31.33 2.44
3769 4216 2.490115 AGTTTGACCGAGTTTGTGCAAA 59.510 40.909 0.00 0.00 0.00 3.68
3770 4217 2.088423 AGTTTGACCGAGTTTGTGCAA 58.912 42.857 0.00 0.00 0.00 4.08
3771 4218 1.745232 AGTTTGACCGAGTTTGTGCA 58.255 45.000 0.00 0.00 0.00 4.57
3772 4219 2.844122 AAGTTTGACCGAGTTTGTGC 57.156 45.000 0.00 0.00 0.00 4.57
3773 4220 4.349663 TCAAAGTTTGACCGAGTTTGTG 57.650 40.909 14.35 0.00 38.17 3.33
3774 4221 5.379732 TTTCAAAGTTTGACCGAGTTTGT 57.620 34.783 17.85 0.00 39.87 2.83
3775 4222 7.193595 ACTATTTCAAAGTTTGACCGAGTTTG 58.806 34.615 17.85 6.08 39.87 2.93
3776 4223 7.329588 ACTATTTCAAAGTTTGACCGAGTTT 57.670 32.000 17.85 1.56 39.87 2.66
3777 4224 6.937436 ACTATTTCAAAGTTTGACCGAGTT 57.063 33.333 17.85 2.81 39.87 3.01
3778 4225 6.937436 AACTATTTCAAAGTTTGACCGAGT 57.063 33.333 17.85 16.16 39.87 4.18
3786 4233 6.609616 TGGAGGGTCAAACTATTTCAAAGTTT 59.390 34.615 0.00 0.00 45.64 2.66
3787 4234 6.133356 TGGAGGGTCAAACTATTTCAAAGTT 58.867 36.000 0.00 0.00 38.82 2.66
3788 4235 5.701224 TGGAGGGTCAAACTATTTCAAAGT 58.299 37.500 0.00 0.00 0.00 2.66
3789 4236 6.040391 TGTTGGAGGGTCAAACTATTTCAAAG 59.960 38.462 0.00 0.00 0.00 2.77
3790 4237 5.894393 TGTTGGAGGGTCAAACTATTTCAAA 59.106 36.000 0.00 0.00 0.00 2.69
3791 4238 5.450453 TGTTGGAGGGTCAAACTATTTCAA 58.550 37.500 0.00 0.00 0.00 2.69
3792 4239 5.055265 TGTTGGAGGGTCAAACTATTTCA 57.945 39.130 0.00 0.00 0.00 2.69
3793 4240 6.040504 ACTTTGTTGGAGGGTCAAACTATTTC 59.959 38.462 0.00 0.00 0.00 2.17
3794 4241 5.897250 ACTTTGTTGGAGGGTCAAACTATTT 59.103 36.000 0.00 0.00 0.00 1.40
3795 4242 5.454966 ACTTTGTTGGAGGGTCAAACTATT 58.545 37.500 0.00 0.00 0.00 1.73
3796 4243 5.061721 ACTTTGTTGGAGGGTCAAACTAT 57.938 39.130 0.00 0.00 0.00 2.12
3797 4244 4.513406 ACTTTGTTGGAGGGTCAAACTA 57.487 40.909 0.00 0.00 0.00 2.24
3798 4245 3.382083 ACTTTGTTGGAGGGTCAAACT 57.618 42.857 0.00 0.00 0.00 2.66
3799 4246 3.430236 CCAACTTTGTTGGAGGGTCAAAC 60.430 47.826 21.06 0.00 42.06 2.93
3800 4247 2.763448 CCAACTTTGTTGGAGGGTCAAA 59.237 45.455 21.06 0.00 42.06 2.69
3801 4248 2.024846 TCCAACTTTGTTGGAGGGTCAA 60.025 45.455 23.38 4.76 43.17 3.18
3802 4249 1.566703 TCCAACTTTGTTGGAGGGTCA 59.433 47.619 23.38 5.39 43.17 4.02
3803 4250 2.358322 TCCAACTTTGTTGGAGGGTC 57.642 50.000 23.38 0.00 43.17 4.46
3808 4255 4.850680 AGTGTACTTCCAACTTTGTTGGA 58.149 39.130 23.38 23.38 46.08 3.53
3809 4256 4.881850 AGAGTGTACTTCCAACTTTGTTGG 59.118 41.667 19.97 19.97 40.87 3.77
3810 4257 6.436843 AAGAGTGTACTTCCAACTTTGTTG 57.563 37.500 3.69 3.69 0.00 3.33
3811 4258 6.657541 TGAAAGAGTGTACTTCCAACTTTGTT 59.342 34.615 0.00 0.00 0.00 2.83
3812 4259 6.177610 TGAAAGAGTGTACTTCCAACTTTGT 58.822 36.000 0.00 0.00 0.00 2.83
3813 4260 6.677781 TGAAAGAGTGTACTTCCAACTTTG 57.322 37.500 0.00 0.00 0.00 2.77
3814 4261 6.318900 CCTTGAAAGAGTGTACTTCCAACTTT 59.681 38.462 0.00 0.00 0.00 2.66
3815 4262 5.823045 CCTTGAAAGAGTGTACTTCCAACTT 59.177 40.000 0.00 0.00 0.00 2.66
3816 4263 5.130477 TCCTTGAAAGAGTGTACTTCCAACT 59.870 40.000 0.00 0.00 0.00 3.16
3817 4264 5.236695 GTCCTTGAAAGAGTGTACTTCCAAC 59.763 44.000 0.00 0.00 0.00 3.77
3818 4265 5.365619 GTCCTTGAAAGAGTGTACTTCCAA 58.634 41.667 0.00 0.00 0.00 3.53
3819 4266 4.500887 CGTCCTTGAAAGAGTGTACTTCCA 60.501 45.833 0.00 0.00 0.00 3.53
3820 4267 3.988517 CGTCCTTGAAAGAGTGTACTTCC 59.011 47.826 0.00 0.00 0.00 3.46
3821 4268 3.988517 CCGTCCTTGAAAGAGTGTACTTC 59.011 47.826 0.00 0.00 0.00 3.01
3822 4269 3.640029 TCCGTCCTTGAAAGAGTGTACTT 59.360 43.478 0.00 0.00 0.00 2.24
3823 4270 3.228453 TCCGTCCTTGAAAGAGTGTACT 58.772 45.455 0.00 0.00 0.00 2.73
3824 4271 3.576648 CTCCGTCCTTGAAAGAGTGTAC 58.423 50.000 0.00 0.00 0.00 2.90
3825 4272 2.561419 CCTCCGTCCTTGAAAGAGTGTA 59.439 50.000 0.00 0.00 0.00 2.90
3826 4273 1.344763 CCTCCGTCCTTGAAAGAGTGT 59.655 52.381 0.00 0.00 0.00 3.55
3827 4274 1.338200 CCCTCCGTCCTTGAAAGAGTG 60.338 57.143 0.00 0.00 0.00 3.51
3828 4275 0.977395 CCCTCCGTCCTTGAAAGAGT 59.023 55.000 0.00 0.00 0.00 3.24
3829 4276 1.205893 CTCCCTCCGTCCTTGAAAGAG 59.794 57.143 0.00 0.00 0.00 2.85
3830 4277 1.267121 CTCCCTCCGTCCTTGAAAGA 58.733 55.000 0.00 0.00 0.00 2.52
3831 4278 0.977395 ACTCCCTCCGTCCTTGAAAG 59.023 55.000 0.00 0.00 0.00 2.62
3832 4279 1.897802 GTACTCCCTCCGTCCTTGAAA 59.102 52.381 0.00 0.00 0.00 2.69
3833 4280 1.076677 AGTACTCCCTCCGTCCTTGAA 59.923 52.381 0.00 0.00 0.00 2.69
3834 4281 0.702902 AGTACTCCCTCCGTCCTTGA 59.297 55.000 0.00 0.00 0.00 3.02
3835 4282 1.558233 AAGTACTCCCTCCGTCCTTG 58.442 55.000 0.00 0.00 0.00 3.61
3836 4283 1.900486 CAAAGTACTCCCTCCGTCCTT 59.100 52.381 0.00 0.00 0.00 3.36
3837 4284 1.558233 CAAAGTACTCCCTCCGTCCT 58.442 55.000 0.00 0.00 0.00 3.85
3838 4285 0.535797 CCAAAGTACTCCCTCCGTCC 59.464 60.000 0.00 0.00 0.00 4.79
3839 4286 1.553706 TCCAAAGTACTCCCTCCGTC 58.446 55.000 0.00 0.00 0.00 4.79
3840 4287 2.249309 ATCCAAAGTACTCCCTCCGT 57.751 50.000 0.00 0.00 0.00 4.69
3841 4288 3.563223 TCTATCCAAAGTACTCCCTCCG 58.437 50.000 0.00 0.00 0.00 4.63
3842 4289 5.396548 GGTTTCTATCCAAAGTACTCCCTCC 60.397 48.000 0.00 0.00 0.00 4.30
3843 4290 5.189145 TGGTTTCTATCCAAAGTACTCCCTC 59.811 44.000 0.00 0.00 31.50 4.30
3844 4291 5.098663 TGGTTTCTATCCAAAGTACTCCCT 58.901 41.667 0.00 0.00 31.50 4.20
3845 4292 5.045797 ACTGGTTTCTATCCAAAGTACTCCC 60.046 44.000 0.00 0.00 34.35 4.30
3846 4293 6.051179 ACTGGTTTCTATCCAAAGTACTCC 57.949 41.667 0.00 0.00 34.35 3.85
3847 4294 9.315525 GATTACTGGTTTCTATCCAAAGTACTC 57.684 37.037 0.00 0.00 34.35 2.59
3848 4295 7.980099 CGATTACTGGTTTCTATCCAAAGTACT 59.020 37.037 0.00 0.00 34.35 2.73
3849 4296 7.254353 GCGATTACTGGTTTCTATCCAAAGTAC 60.254 40.741 0.00 0.00 34.35 2.73
3850 4297 6.759827 GCGATTACTGGTTTCTATCCAAAGTA 59.240 38.462 0.00 0.00 34.35 2.24
3851 4298 5.585047 GCGATTACTGGTTTCTATCCAAAGT 59.415 40.000 0.00 0.00 34.35 2.66
3852 4299 5.584649 TGCGATTACTGGTTTCTATCCAAAG 59.415 40.000 0.00 0.00 34.35 2.77
3853 4300 5.353123 GTGCGATTACTGGTTTCTATCCAAA 59.647 40.000 0.00 0.00 34.35 3.28
3854 4301 4.873827 GTGCGATTACTGGTTTCTATCCAA 59.126 41.667 0.00 0.00 34.35 3.53
3893 4340 2.714250 AGATAAACAGTGGTTCACCCCA 59.286 45.455 0.00 0.00 35.82 4.96
4002 4449 5.997746 CCTGAAGAGAATTGTGTTAACAGGA 59.002 40.000 8.98 0.57 42.22 3.86
4154 4601 5.384336 TGACTTGGATGATTTGGAAGAACA 58.616 37.500 0.00 0.00 0.00 3.18
4190 4637 7.280205 CCATAAATAAGCGAGAAACAGGTACTT 59.720 37.037 0.00 0.00 34.60 2.24
4191 4638 6.761714 CCATAAATAAGCGAGAAACAGGTACT 59.238 38.462 0.00 0.00 43.88 2.73
4192 4639 6.018180 CCCATAAATAAGCGAGAAACAGGTAC 60.018 42.308 0.00 0.00 0.00 3.34
4376 4823 1.140852 TCAATAGGAGGCCCATCAACG 59.859 52.381 0.00 0.00 33.88 4.10
4840 5287 8.517878 CATCAAACATTATTATCCCCATCAGAC 58.482 37.037 0.00 0.00 0.00 3.51
5012 5462 4.827692 TGCGATTATTACCACAGAACACT 58.172 39.130 0.00 0.00 0.00 3.55
5054 5504 5.086888 ACGTAAACGGATGAAAGTGAAAC 57.913 39.130 7.50 0.00 44.95 2.78
5125 5579 4.207891 ACATCACTCCACAGTACAATCC 57.792 45.455 0.00 0.00 0.00 3.01
5136 5590 5.487488 ACTTCCCTGTTATAACATCACTCCA 59.513 40.000 18.35 0.00 38.41 3.86
5151 5605 3.833070 AGTACATCGAAGAACTTCCCTGT 59.167 43.478 15.62 15.62 43.58 4.00
5211 5667 3.555168 CCGCCTCCCATTTAGATCACTAC 60.555 52.174 0.00 0.00 0.00 2.73
5219 5675 1.436983 GAACGCCGCCTCCCATTTAG 61.437 60.000 0.00 0.00 0.00 1.85
5233 5689 2.482374 GCAGATGCACCAGAACGC 59.518 61.111 0.00 0.00 41.59 4.84
5319 5789 1.672356 GCTGACTTCCCGCACATGT 60.672 57.895 0.00 0.00 0.00 3.21
5328 5798 5.095490 CCACGAAATTTAATGCTGACTTCC 58.905 41.667 0.00 0.00 0.00 3.46
5335 5805 6.325919 TCAAACTCCACGAAATTTAATGCT 57.674 33.333 0.00 0.00 0.00 3.79
5337 5807 8.574196 AAGTTCAAACTCCACGAAATTTAATG 57.426 30.769 0.00 0.00 38.57 1.90
5338 5808 9.594478 AAAAGTTCAAACTCCACGAAATTTAAT 57.406 25.926 0.00 0.00 36.31 1.40
5382 5852 6.991531 TGTTGCAGCCTCAAAAATTTATCTTT 59.008 30.769 0.00 0.00 0.00 2.52
5384 5854 6.100404 TGTTGCAGCCTCAAAAATTTATCT 57.900 33.333 0.00 0.00 0.00 1.98
5385 5855 6.783892 TTGTTGCAGCCTCAAAAATTTATC 57.216 33.333 0.00 0.00 0.00 1.75
5387 5857 6.112058 ACTTTGTTGCAGCCTCAAAAATTTA 58.888 32.000 11.47 0.00 32.06 1.40
5388 5858 4.943093 ACTTTGTTGCAGCCTCAAAAATTT 59.057 33.333 11.47 0.00 32.06 1.82
5389 5859 4.516323 ACTTTGTTGCAGCCTCAAAAATT 58.484 34.783 11.47 0.52 32.06 1.82
5390 5860 4.141233 ACTTTGTTGCAGCCTCAAAAAT 57.859 36.364 11.47 3.27 32.06 1.82
5392 5862 3.608316 AACTTTGTTGCAGCCTCAAAA 57.392 38.095 11.47 0.00 32.06 2.44
5393 5863 3.608316 AAACTTTGTTGCAGCCTCAAA 57.392 38.095 0.00 10.36 0.00 2.69
5394 5864 3.699038 AGTAAACTTTGTTGCAGCCTCAA 59.301 39.130 0.00 0.00 0.00 3.02
5396 5866 3.066760 ACAGTAAACTTTGTTGCAGCCTC 59.933 43.478 0.00 0.00 0.00 4.70
5397 5867 3.023832 ACAGTAAACTTTGTTGCAGCCT 58.976 40.909 0.00 0.00 0.00 4.58
5398 5868 3.436700 ACAGTAAACTTTGTTGCAGCC 57.563 42.857 0.00 0.00 0.00 4.85
5399 5869 5.347364 TCAAAACAGTAAACTTTGTTGCAGC 59.653 36.000 0.00 0.00 37.57 5.25
5400 5870 6.942886 TCAAAACAGTAAACTTTGTTGCAG 57.057 33.333 0.00 0.00 37.57 4.41
5401 5871 7.093354 TGATCAAAACAGTAAACTTTGTTGCA 58.907 30.769 0.00 0.00 37.57 4.08
5440 7306 1.205893 GGACATCCGAGGAGATATGGC 59.794 57.143 0.00 0.00 0.00 4.40
5453 7319 1.808411 TTCAGCTTGTTCGGACATCC 58.192 50.000 0.00 0.00 35.29 3.51
5478 7346 3.367992 TCCATTGTGTGATGTTTGTGC 57.632 42.857 0.00 0.00 0.00 4.57
5482 7350 5.596836 AGTTGTTCCATTGTGTGATGTTT 57.403 34.783 0.00 0.00 0.00 2.83
5545 7413 5.983540 TGCACCCAGTGAAAAAGTAAATTT 58.016 33.333 0.00 0.00 35.23 1.82
5554 7422 2.507484 CTCATCTGCACCCAGTGAAAA 58.493 47.619 0.00 0.00 40.09 2.29
5557 7425 1.297689 GCTCATCTGCACCCAGTGA 59.702 57.895 0.00 0.00 40.09 3.41
5558 7426 1.748122 GGCTCATCTGCACCCAGTG 60.748 63.158 0.00 0.00 40.09 3.66
5559 7427 2.673523 GGCTCATCTGCACCCAGT 59.326 61.111 0.00 0.00 40.09 4.00
5564 7432 2.827642 GCCTGGGCTCATCTGCAC 60.828 66.667 4.12 0.00 38.26 4.57
5575 7443 3.441572 GGATATTCAATTCGATGCCTGGG 59.558 47.826 0.00 0.00 0.00 4.45
5576 7444 3.125829 CGGATATTCAATTCGATGCCTGG 59.874 47.826 0.00 0.00 0.00 4.45
5577 7445 3.996363 TCGGATATTCAATTCGATGCCTG 59.004 43.478 0.00 0.00 0.00 4.85
5578 7446 4.271696 TCGGATATTCAATTCGATGCCT 57.728 40.909 0.00 0.00 0.00 4.75
5580 7448 7.276658 ACTTAGATCGGATATTCAATTCGATGC 59.723 37.037 5.93 0.00 40.10 3.91
5583 7451 7.882179 TCACTTAGATCGGATATTCAATTCGA 58.118 34.615 0.00 0.00 0.00 3.71
5627 7495 6.027482 ACTAAGTAGGAAATTGGTACTCCCA 58.973 40.000 0.00 0.00 43.27 4.37
5648 7516 7.580109 GCACCAGGTAAAAATGTACTCCTACTA 60.580 40.741 0.00 0.00 0.00 1.82
5649 7517 6.708285 CACCAGGTAAAAATGTACTCCTACT 58.292 40.000 0.00 0.00 0.00 2.57
5650 7518 5.353400 GCACCAGGTAAAAATGTACTCCTAC 59.647 44.000 0.00 0.00 0.00 3.18
5652 7520 4.332828 GCACCAGGTAAAAATGTACTCCT 58.667 43.478 0.00 0.00 0.00 3.69
5653 7521 3.442625 GGCACCAGGTAAAAATGTACTCC 59.557 47.826 0.00 0.00 0.00 3.85
5654 7522 4.076394 TGGCACCAGGTAAAAATGTACTC 58.924 43.478 0.00 0.00 0.00 2.59
5655 7523 4.107127 TGGCACCAGGTAAAAATGTACT 57.893 40.909 0.00 0.00 0.00 2.73
5656 7524 4.857509 TTGGCACCAGGTAAAAATGTAC 57.142 40.909 0.00 0.00 0.00 2.90
5657 7525 6.426646 AAATTGGCACCAGGTAAAAATGTA 57.573 33.333 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.