Multiple sequence alignment - TraesCS3B01G206400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G206400 chr3B 100.000 8106 0 0 1 8106 241684380 241676275 0.000000e+00 14970.0
1 TraesCS3B01G206400 chr3B 89.655 145 2 6 5462 5601 828548739 828548603 1.080000e-38 172.0
2 TraesCS3B01G206400 chr3B 96.250 80 3 0 3872 3951 126580149 126580070 1.840000e-26 132.0
3 TraesCS3B01G206400 chr3B 93.333 45 3 0 8007 8051 522034948 522034992 5.250000e-07 67.6
4 TraesCS3B01G206400 chr3D 96.345 3611 80 28 1979 5546 165865490 165861889 0.000000e+00 5890.0
5 TraesCS3B01G206400 chr3D 94.829 2398 45 16 5545 7906 165861944 165859590 0.000000e+00 3668.0
6 TraesCS3B01G206400 chr3D 93.907 1674 28 18 358 1977 165867181 165865528 0.000000e+00 2459.0
7 TraesCS3B01G206400 chr3D 88.591 149 13 2 5463 5608 515964510 515964363 2.320000e-40 178.0
8 TraesCS3B01G206400 chr3D 93.750 80 5 0 3877 3956 516880545 516880466 3.970000e-23 121.0
9 TraesCS3B01G206400 chr3D 92.982 57 3 1 20 75 188414726 188414782 1.870000e-11 82.4
10 TraesCS3B01G206400 chr3D 81.308 107 15 4 20 122 609643350 609643245 1.870000e-11 82.4
11 TraesCS3B01G206400 chr3D 90.566 53 5 0 23 75 382980484 382980536 4.060000e-08 71.3
12 TraesCS3B01G206400 chr3D 79.381 97 17 3 34 128 517771857 517771762 1.890000e-06 65.8
13 TraesCS3B01G206400 chr3A 97.263 2411 56 7 1979 4383 203995932 203993526 0.000000e+00 4078.0
14 TraesCS3B01G206400 chr3A 96.287 2343 44 7 5598 7906 203986256 203983923 0.000000e+00 3805.0
15 TraesCS3B01G206400 chr3A 90.131 2057 101 44 4 1979 203998003 203995968 0.000000e+00 2580.0
16 TraesCS3B01G206400 chr3A 96.137 906 29 4 4381 5282 203993383 203992480 0.000000e+00 1474.0
17 TraesCS3B01G206400 chr3A 96.354 192 5 1 5275 5464 203986447 203986256 1.700000e-81 315.0
18 TraesCS3B01G206400 chr3A 88.764 89 10 0 3872 3960 646737342 646737254 8.600000e-20 110.0
19 TraesCS3B01G206400 chr1D 93.137 204 12 2 7905 8106 478363838 478363635 1.710000e-76 298.0
20 TraesCS3B01G206400 chr1D 86.093 151 13 6 5455 5605 112467782 112467924 1.090000e-33 156.0
21 TraesCS3B01G206400 chr1D 94.118 102 4 1 5500 5601 114366290 114366389 3.920000e-33 154.0
22 TraesCS3B01G206400 chr1D 91.589 107 8 1 5440 5546 440050464 440050359 6.560000e-31 147.0
23 TraesCS3B01G206400 chr1D 95.556 45 1 1 3872 3916 444337517 444337474 4.060000e-08 71.3
24 TraesCS3B01G206400 chr1D 97.500 40 1 0 3872 3911 476765181 476765220 1.460000e-07 69.4
25 TraesCS3B01G206400 chr1D 85.484 62 6 3 3877 3937 476230682 476230741 2.440000e-05 62.1
26 TraesCS3B01G206400 chr2B 91.304 138 10 1 5455 5592 615778274 615778409 3.860000e-43 187.0
27 TraesCS3B01G206400 chr5A 90.517 116 9 2 5433 5546 390156955 390157070 1.410000e-32 152.0
28 TraesCS3B01G206400 chr5A 83.571 140 19 3 5463 5602 567724045 567724180 2.370000e-25 128.0
29 TraesCS3B01G206400 chr5A 79.720 143 25 3 5463 5601 397248902 397248760 5.180000e-17 100.0
30 TraesCS3B01G206400 chr4D 87.302 126 8 6 5424 5546 489440919 489441039 3.950000e-28 137.0
31 TraesCS3B01G206400 chr7D 84.892 139 15 1 5463 5601 60338979 60339111 1.420000e-27 135.0
32 TraesCS3B01G206400 chr7D 91.860 86 7 0 3871 3956 351583646 351583731 3.970000e-23 121.0
33 TraesCS3B01G206400 chr1B 96.250 80 3 0 3872 3951 120657843 120657922 1.840000e-26 132.0
34 TraesCS3B01G206400 chr1B 91.358 81 6 1 3871 3951 509149863 509149784 8.600000e-20 110.0
35 TraesCS3B01G206400 chr1B 89.412 85 8 1 3872 3956 448247690 448247607 1.110000e-18 106.0
36 TraesCS3B01G206400 chr1B 85.714 77 10 1 16 92 539587551 539587476 6.740000e-11 80.5
37 TraesCS3B01G206400 chr6A 90.588 85 8 0 3872 3956 256482207 256482123 6.650000e-21 113.0
38 TraesCS3B01G206400 chr6A 82.143 84 13 1 3873 3956 66388081 66388162 4.060000e-08 71.3
39 TraesCS3B01G206400 chr4A 94.366 71 4 0 3872 3942 711956655 711956725 8.600000e-20 110.0
40 TraesCS3B01G206400 chr4A 94.366 71 4 0 3872 3942 711973413 711973483 8.600000e-20 110.0
41 TraesCS3B01G206400 chr6D 89.535 86 8 1 3872 3956 166762403 166762488 3.090000e-19 108.0
42 TraesCS3B01G206400 chr6D 97.143 35 1 0 3877 3911 338411717 338411683 8.790000e-05 60.2
43 TraesCS3B01G206400 chr6B 93.939 66 4 0 3877 3942 380551230 380551165 5.180000e-17 100.0
44 TraesCS3B01G206400 chr1A 88.060 67 7 1 3872 3937 490312117 490312183 2.430000e-10 78.7
45 TraesCS3B01G206400 chr5B 86.111 72 9 1 23 93 671832352 671832423 8.720000e-10 76.8
46 TraesCS3B01G206400 chr5D 85.714 70 9 1 3869 3937 516792228 516792159 1.130000e-08 73.1
47 TraesCS3B01G206400 chr5D 80.000 80 15 1 3877 3956 40921219 40921297 3.160000e-04 58.4
48 TraesCS3B01G206400 chrUn 85.075 67 6 4 3872 3937 41748 41811 1.890000e-06 65.8
49 TraesCS3B01G206400 chrUn 92.857 42 3 0 3870 3911 48429913 48429954 2.440000e-05 62.1
50 TraesCS3B01G206400 chr2A 81.944 72 12 1 20 90 14412193 14412264 8.790000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G206400 chr3B 241676275 241684380 8105 True 14970.000000 14970 100.000000 1 8106 1 chr3B.!!$R2 8105
1 TraesCS3B01G206400 chr3D 165859590 165867181 7591 True 4005.666667 5890 95.027000 358 7906 3 chr3D.!!$R5 7548
2 TraesCS3B01G206400 chr3A 203992480 203998003 5523 True 2710.666667 4078 94.510333 4 5282 3 chr3A.!!$R3 5278
3 TraesCS3B01G206400 chr3A 203983923 203986447 2524 True 2060.000000 3805 96.320500 5275 7906 2 chr3A.!!$R2 2631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 162 0.107410 AAGGTGCGTGAGTGGAACAA 60.107 50.000 0.00 0.00 44.16 2.83 F
313 321 0.232303 CCGAAGTTTGACGTGTCAGC 59.768 55.000 0.00 1.30 41.13 4.26 F
835 857 0.253044 AGAGAGAGAGAGCGAGCAGT 59.747 55.000 0.00 0.00 0.00 4.40 F
1458 1518 0.384309 GATCGAGCCCGTGTGTATGA 59.616 55.000 0.00 0.00 37.05 2.15 F
1744 1829 0.537188 TGATTCGCTTCTCCACTCCC 59.463 55.000 0.00 0.00 0.00 4.30 F
2424 2565 7.616935 ACAAATGGAGTAATCACTGATTCCATT 59.383 33.333 21.25 21.25 41.56 3.16 F
4153 4295 0.552848 ACCGATAACCCCGAGGAGTA 59.447 55.000 0.00 0.00 36.73 2.59 F
4699 5019 3.623703 TCATATGGCATGCACTCAAACT 58.376 40.909 21.36 0.00 0.00 2.66 F
5091 5413 0.333993 AGCCTCACATTGCCCAGATT 59.666 50.000 0.00 0.00 0.00 2.40 F
5551 5878 2.069775 TGGGATGGAGGGAGTTTTTGA 58.930 47.619 0.00 0.00 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1794 1879 0.181824 GTAGCCCATAAAAGCCGGGA 59.818 55.000 2.18 0.0 43.21 5.14 R
1795 1880 0.182775 AGTAGCCCATAAAAGCCGGG 59.817 55.000 2.18 0.0 43.42 5.73 R
2562 2703 1.991264 CTCAAGAGTGTGACTGATGCG 59.009 52.381 0.00 0.0 0.00 4.73 R
2968 3109 0.039256 CACCCTGCATTTCGTTGGTG 60.039 55.000 0.00 0.0 37.51 4.17 R
3121 3262 1.373497 GGCGTATGGATGAGGCGAG 60.373 63.158 0.00 0.0 0.00 5.03 R
4338 4482 1.139654 GTGCCTCATACTCAGCCATCA 59.860 52.381 0.00 0.0 0.00 3.07 R
5008 5330 0.256752 TGAGGATCTTGGCCACATGG 59.743 55.000 3.88 0.0 34.92 3.66 R
5531 5858 2.069775 TCAAAAACTCCCTCCATCCCA 58.930 47.619 0.00 0.0 0.00 4.37 R
7058 7422 2.968675 ACCACCAGTTGTCGTATTAGC 58.031 47.619 0.00 0.0 0.00 3.09 R
7232 7596 6.486320 TGATTTCAACACAACAAGATAGAGCA 59.514 34.615 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.662604 AAGAAAAATCTCAATGGCATTTGAC 57.337 32.000 10.65 0.58 32.39 3.18
41 42 6.168389 AGAAAAATCTCAATGGCATTTGACC 58.832 36.000 10.65 1.46 32.39 4.02
64 65 3.414700 CTTGCCGAGCGTGGTGTC 61.415 66.667 0.00 0.00 0.00 3.67
74 75 2.509336 GTGGTGTCCGCCATCGAG 60.509 66.667 2.42 0.00 41.08 4.04
75 76 2.678580 TGGTGTCCGCCATCGAGA 60.679 61.111 0.00 0.00 38.10 4.04
94 96 2.961721 CATCGACATGGGCGGACG 60.962 66.667 9.82 0.00 0.00 4.79
106 108 1.242076 GGCGGACGATACCTAAGCTA 58.758 55.000 0.00 0.00 0.00 3.32
107 109 1.817447 GGCGGACGATACCTAAGCTAT 59.183 52.381 0.00 0.00 0.00 2.97
108 110 3.012518 GGCGGACGATACCTAAGCTATA 58.987 50.000 0.00 0.00 0.00 1.31
111 113 4.201802 GCGGACGATACCTAAGCTATAGAC 60.202 50.000 3.21 0.00 0.00 2.59
116 118 5.816777 ACGATACCTAAGCTATAGACGGATC 59.183 44.000 3.21 0.00 0.00 3.36
127 129 1.887707 GACGGATCCGGGATGCAAC 60.888 63.158 35.87 15.48 44.69 4.17
138 140 1.359848 GGATGCAACGACGATGAAGT 58.640 50.000 9.52 0.00 0.00 3.01
148 150 1.654105 GACGATGAAGTACAAGGTGCG 59.346 52.381 0.00 0.00 0.00 5.34
157 159 0.753867 TACAAGGTGCGTGAGTGGAA 59.246 50.000 0.00 0.00 0.00 3.53
158 160 0.814010 ACAAGGTGCGTGAGTGGAAC 60.814 55.000 0.00 0.00 0.00 3.62
160 162 0.107410 AAGGTGCGTGAGTGGAACAA 60.107 50.000 0.00 0.00 44.16 2.83
168 170 2.030893 CGTGAGTGGAACAACGGTAGTA 60.031 50.000 0.00 0.00 44.16 1.82
172 174 2.821969 AGTGGAACAACGGTAGTACGAT 59.178 45.455 0.00 0.00 44.16 3.73
173 175 3.119708 AGTGGAACAACGGTAGTACGATC 60.120 47.826 0.00 0.00 44.16 3.69
177 180 4.685628 GGAACAACGGTAGTACGATCAAAA 59.314 41.667 0.00 0.00 37.61 2.44
179 182 6.128472 GGAACAACGGTAGTACGATCAAAATT 60.128 38.462 0.00 0.00 37.61 1.82
182 185 5.075858 ACGGTAGTACGATCAAAATTGGA 57.924 39.130 0.00 0.00 37.61 3.53
183 186 4.866486 ACGGTAGTACGATCAAAATTGGAC 59.134 41.667 0.00 0.00 37.61 4.02
184 187 4.865925 CGGTAGTACGATCAAAATTGGACA 59.134 41.667 0.00 0.00 32.99 4.02
186 189 6.292168 CGGTAGTACGATCAAAATTGGACATC 60.292 42.308 0.00 0.00 32.99 3.06
188 191 4.570772 AGTACGATCAAAATTGGACATCGG 59.429 41.667 15.58 3.77 36.99 4.18
190 193 2.719798 GATCAAAATTGGACATCGGCG 58.280 47.619 0.00 0.00 0.00 6.46
201 204 2.098233 CATCGGCGGTGTGGTGTAC 61.098 63.158 12.96 0.00 0.00 2.90
203 206 4.345962 CGGCGGTGTGGTGTACGA 62.346 66.667 0.00 0.00 0.00 3.43
204 207 2.263540 GGCGGTGTGGTGTACGAT 59.736 61.111 0.00 0.00 0.00 3.73
205 208 2.098233 GGCGGTGTGGTGTACGATG 61.098 63.158 0.00 0.00 0.00 3.84
207 210 2.098233 CGGTGTGGTGTACGATGGC 61.098 63.158 0.00 0.00 0.00 4.40
208 211 2.098233 GGTGTGGTGTACGATGGCG 61.098 63.158 0.00 0.00 44.79 5.69
231 235 0.319813 GTCTTGGTGGGTGCAAATGC 60.320 55.000 0.00 0.00 42.50 3.56
250 254 1.405391 GCAGAGCAAGAGAGGAGGAAC 60.405 57.143 0.00 0.00 0.00 3.62
251 255 1.898472 CAGAGCAAGAGAGGAGGAACA 59.102 52.381 0.00 0.00 0.00 3.18
252 256 2.301296 CAGAGCAAGAGAGGAGGAACAA 59.699 50.000 0.00 0.00 0.00 2.83
261 265 2.783510 AGAGGAGGAACAAAGTGGGAAA 59.216 45.455 0.00 0.00 0.00 3.13
265 269 3.562182 GAGGAACAAAGTGGGAAAAGGA 58.438 45.455 0.00 0.00 0.00 3.36
269 273 4.202121 GGAACAAAGTGGGAAAAGGACTTC 60.202 45.833 0.00 0.00 0.00 3.01
270 274 3.976015 ACAAAGTGGGAAAAGGACTTCA 58.024 40.909 0.00 0.00 0.00 3.02
271 275 4.349365 ACAAAGTGGGAAAAGGACTTCAA 58.651 39.130 0.00 0.00 0.00 2.69
272 276 4.775253 ACAAAGTGGGAAAAGGACTTCAAA 59.225 37.500 0.00 0.00 0.00 2.69
273 277 5.105351 ACAAAGTGGGAAAAGGACTTCAAAG 60.105 40.000 0.00 0.00 0.00 2.77
277 281 2.425829 GGGAAAAGGACTTCAAAGGGGT 60.426 50.000 0.00 0.00 0.00 4.95
279 283 3.296854 GAAAAGGACTTCAAAGGGGTGT 58.703 45.455 0.00 0.00 0.00 4.16
280 284 2.364972 AAGGACTTCAAAGGGGTGTG 57.635 50.000 0.00 0.00 0.00 3.82
283 287 1.318576 GACTTCAAAGGGGTGTGTGG 58.681 55.000 0.00 0.00 0.00 4.17
284 288 0.755327 ACTTCAAAGGGGTGTGTGGC 60.755 55.000 0.00 0.00 0.00 5.01
301 309 4.636435 CCCGGGTGTGCCGAAGTT 62.636 66.667 14.18 0.00 34.97 2.66
313 321 0.232303 CCGAAGTTTGACGTGTCAGC 59.768 55.000 0.00 1.30 41.13 4.26
325 333 0.965439 GTGTCAGCTGTCCAGACTCT 59.035 55.000 14.67 0.00 33.56 3.24
326 334 1.067915 GTGTCAGCTGTCCAGACTCTC 60.068 57.143 14.67 0.00 33.56 3.20
332 340 1.072331 GCTGTCCAGACTCTCCCAAAA 59.928 52.381 0.00 0.00 0.00 2.44
333 341 2.487265 GCTGTCCAGACTCTCCCAAAAA 60.487 50.000 0.00 0.00 0.00 1.94
335 343 4.006319 CTGTCCAGACTCTCCCAAAAATC 58.994 47.826 0.00 0.00 0.00 2.17
338 346 2.616510 CCAGACTCTCCCAAAAATCGCT 60.617 50.000 0.00 0.00 0.00 4.93
341 349 3.515901 AGACTCTCCCAAAAATCGCTAGT 59.484 43.478 0.00 0.00 0.00 2.57
344 356 5.070685 ACTCTCCCAAAAATCGCTAGTTTT 58.929 37.500 0.00 0.00 33.39 2.43
380 392 6.756074 AGTGTGTCATGGTAAATGTGTTTTTG 59.244 34.615 0.00 0.00 0.00 2.44
384 396 5.401079 GTCATGGTAAATGTGTTTTTGTCCG 59.599 40.000 0.00 0.00 0.00 4.79
391 403 7.863877 GGTAAATGTGTTTTTGTCCGAAATAGT 59.136 33.333 0.00 0.00 0.00 2.12
671 685 4.042062 TCCCAGTCAAGAAGCCCATATATG 59.958 45.833 5.68 5.68 0.00 1.78
674 688 5.934625 CCAGTCAAGAAGCCCATATATGTAC 59.065 44.000 11.73 3.35 0.00 2.90
675 689 6.239714 CCAGTCAAGAAGCCCATATATGTACT 60.240 42.308 11.73 5.56 0.00 2.73
724 746 4.025145 CGAGAGAAACAAACACCAACCTAC 60.025 45.833 0.00 0.00 0.00 3.18
828 850 3.004752 AGGACAGAAGAGAGAGAGAGC 57.995 52.381 0.00 0.00 0.00 4.09
832 854 1.331756 CAGAAGAGAGAGAGAGCGAGC 59.668 57.143 0.00 0.00 0.00 5.03
833 855 1.065491 AGAAGAGAGAGAGAGCGAGCA 60.065 52.381 0.00 0.00 0.00 4.26
834 856 1.331756 GAAGAGAGAGAGAGCGAGCAG 59.668 57.143 0.00 0.00 0.00 4.24
835 857 0.253044 AGAGAGAGAGAGCGAGCAGT 59.747 55.000 0.00 0.00 0.00 4.40
1117 1176 1.684869 CGCTTTCCTCTCTCCCTCTCT 60.685 57.143 0.00 0.00 0.00 3.10
1118 1177 2.031870 GCTTTCCTCTCTCCCTCTCTC 58.968 57.143 0.00 0.00 0.00 3.20
1310 1369 1.001158 GACTGCATCTACTACCTCCGC 60.001 57.143 0.00 0.00 0.00 5.54
1441 1501 4.155733 TCCGCGCGATTGGGTGAT 62.156 61.111 34.63 0.00 40.70 3.06
1458 1518 0.384309 GATCGAGCCCGTGTGTATGA 59.616 55.000 0.00 0.00 37.05 2.15
1494 1554 3.442100 GAGCCAGCTTTACGTTACGTAT 58.558 45.455 18.42 0.46 41.97 3.06
1744 1829 0.537188 TGATTCGCTTCTCCACTCCC 59.463 55.000 0.00 0.00 0.00 4.30
1997 2134 9.146984 CGATATACCTCAACAGTTTTGTTCTAA 57.853 33.333 0.00 0.00 45.53 2.10
2424 2565 7.616935 ACAAATGGAGTAATCACTGATTCCATT 59.383 33.333 21.25 21.25 41.56 3.16
2737 2878 8.562892 CCCATTTTATGTTATGTCAGATGACTC 58.437 37.037 13.74 3.63 44.99 3.36
3139 3280 1.373497 CTCGCCTCATCCATACGCC 60.373 63.158 0.00 0.00 0.00 5.68
3166 3307 2.618794 ACAAATTGGCAAATGGGGAGA 58.381 42.857 17.30 0.00 0.00 3.71
3286 3427 8.066000 CCGGTAACTAACTTGAGTTAACAAAAG 58.934 37.037 8.61 12.63 45.95 2.27
3875 4017 7.530525 CGAACACATCTTTTGTATGTTGTACTG 59.469 37.037 0.00 0.00 36.57 2.74
3951 4093 7.166691 ACGTCTTATAAAAAGCTACAGAGGA 57.833 36.000 0.00 0.00 0.00 3.71
3978 4120 4.099573 AGGAACTAGTGCTGCGTGTATATT 59.900 41.667 0.00 0.00 36.02 1.28
4020 4162 3.828875 AGCCAGCTAGAACTTCCATAC 57.171 47.619 0.00 0.00 0.00 2.39
4081 4223 8.367156 GCCTCTTATCTTCAAGAGTCAATCTAT 58.633 37.037 10.94 0.00 46.77 1.98
4117 4259 4.119556 TCTCCATCCGGATGAGTCTATT 57.880 45.455 40.01 4.02 41.79 1.73
4145 4287 3.851458 ATCTACCAAACCGATAACCCC 57.149 47.619 0.00 0.00 0.00 4.95
4153 4295 0.552848 ACCGATAACCCCGAGGAGTA 59.447 55.000 0.00 0.00 36.73 2.59
4327 4471 7.038231 AGTGCAAAGTAAATAGGTTAGAGAGGT 60.038 37.037 0.00 0.00 0.00 3.85
4338 4482 3.821033 GGTTAGAGAGGTGTTGCATGTTT 59.179 43.478 0.00 0.00 0.00 2.83
4339 4483 4.320494 GGTTAGAGAGGTGTTGCATGTTTG 60.320 45.833 0.00 0.00 0.00 2.93
4538 4858 7.305418 CGAGTTGTGAAGCTGTTTGTAAAATTC 60.305 37.037 0.00 0.00 0.00 2.17
4633 4953 9.552114 CAAATCATAAGTTGTTCAGAACTCATC 57.448 33.333 14.51 2.89 35.01 2.92
4699 5019 3.623703 TCATATGGCATGCACTCAAACT 58.376 40.909 21.36 0.00 0.00 2.66
4913 5235 4.020218 GGCATAGTATATCAGGACAGCCAA 60.020 45.833 0.00 0.00 38.27 4.52
5084 5406 0.955428 TTGACCGAGCCTCACATTGC 60.955 55.000 0.00 0.00 0.00 3.56
5091 5413 0.333993 AGCCTCACATTGCCCAGATT 59.666 50.000 0.00 0.00 0.00 2.40
5121 5443 7.592903 GTCAAGATCTTCAAAATTTGTGGAGAC 59.407 37.037 4.57 1.26 0.00 3.36
5151 5473 7.118390 GTGTAATCCAGCATATGATAGTGGAAC 59.882 40.741 16.08 12.54 40.65 3.62
5305 5629 3.325135 AGTTTCCGTCAGTTCAGGATCTT 59.675 43.478 0.00 0.00 33.57 2.40
5369 5693 2.954318 CAATTGCCCATTCCTCTACCTG 59.046 50.000 0.00 0.00 0.00 4.00
5389 5713 6.590068 ACCTGAAGTATTCCATTCTGAGATG 58.410 40.000 0.00 0.00 46.93 2.90
5436 5760 3.096092 GGTCTTGGGTTCATTGCCATAA 58.904 45.455 0.00 0.00 0.00 1.90
5505 5832 4.795970 AAGAGCGTTTTTGACACTAGTG 57.204 40.909 21.44 21.44 0.00 2.74
5507 5834 4.940463 AGAGCGTTTTTGACACTAGTGTA 58.060 39.130 27.98 11.50 45.05 2.90
5508 5835 4.982916 AGAGCGTTTTTGACACTAGTGTAG 59.017 41.667 27.98 13.76 45.05 2.74
5509 5836 4.690122 AGCGTTTTTGACACTAGTGTAGT 58.310 39.130 27.98 6.32 45.05 2.73
5522 5849 4.743644 ACTAGTGTAGTGTCAAAAACGCTC 59.256 41.667 0.00 0.00 45.69 5.03
5523 5850 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
5524 5851 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
5525 5852 5.353938 AGTGTAGTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 45.69 2.10
5526 5853 5.989777 AGTGTAGTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 45.69 1.73
5527 5854 7.149973 AGTGTAGTGTCAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 45.69 0.98
5528 5855 7.817962 AGTGTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 0.00 0.00 45.69 0.86
5529 5856 8.440833 GTGTAGTGTCAAAAACGCTCTTATATT 58.559 33.333 0.00 0.00 45.69 1.28
5530 5857 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
5533 5860 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
5534 5861 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
5535 5862 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
5536 5863 8.784043 GTCAAAAACGCTCTTATATTATGGGAT 58.216 33.333 0.00 0.00 0.00 3.85
5537 5864 8.783093 TCAAAAACGCTCTTATATTATGGGATG 58.217 33.333 0.00 0.00 0.00 3.51
5538 5865 7.687941 AAAACGCTCTTATATTATGGGATGG 57.312 36.000 0.00 0.00 0.00 3.51
5539 5866 6.620877 AACGCTCTTATATTATGGGATGGA 57.379 37.500 0.00 0.00 0.00 3.41
5540 5867 6.227298 ACGCTCTTATATTATGGGATGGAG 57.773 41.667 0.00 0.00 0.00 3.86
5541 5868 5.129485 ACGCTCTTATATTATGGGATGGAGG 59.871 44.000 0.00 0.00 0.00 4.30
5542 5869 5.453903 CGCTCTTATATTATGGGATGGAGGG 60.454 48.000 0.00 0.00 0.00 4.30
5543 5870 5.667626 GCTCTTATATTATGGGATGGAGGGA 59.332 44.000 0.00 0.00 0.00 4.20
5544 5871 6.183361 GCTCTTATATTATGGGATGGAGGGAG 60.183 46.154 0.00 0.00 0.00 4.30
5545 5872 6.826727 TCTTATATTATGGGATGGAGGGAGT 58.173 40.000 0.00 0.00 0.00 3.85
5546 5873 7.263901 TCTTATATTATGGGATGGAGGGAGTT 58.736 38.462 0.00 0.00 0.00 3.01
5547 5874 7.744068 TCTTATATTATGGGATGGAGGGAGTTT 59.256 37.037 0.00 0.00 0.00 2.66
5548 5875 6.803587 ATATTATGGGATGGAGGGAGTTTT 57.196 37.500 0.00 0.00 0.00 2.43
5549 5876 4.965283 TTATGGGATGGAGGGAGTTTTT 57.035 40.909 0.00 0.00 0.00 1.94
5550 5877 2.603075 TGGGATGGAGGGAGTTTTTG 57.397 50.000 0.00 0.00 0.00 2.44
5551 5878 2.069775 TGGGATGGAGGGAGTTTTTGA 58.930 47.619 0.00 0.00 0.00 2.69
5552 5879 2.225017 TGGGATGGAGGGAGTTTTTGAC 60.225 50.000 0.00 0.00 0.00 3.18
5553 5880 2.225017 GGGATGGAGGGAGTTTTTGACA 60.225 50.000 0.00 0.00 0.00 3.58
5554 5881 2.820197 GGATGGAGGGAGTTTTTGACAC 59.180 50.000 0.00 0.00 0.00 3.67
5555 5882 3.498661 GGATGGAGGGAGTTTTTGACACT 60.499 47.826 0.00 0.00 0.00 3.55
5556 5883 4.263331 GGATGGAGGGAGTTTTTGACACTA 60.263 45.833 0.00 0.00 0.00 2.74
5557 5884 4.351874 TGGAGGGAGTTTTTGACACTAG 57.648 45.455 0.00 0.00 0.00 2.57
5558 5885 3.714798 TGGAGGGAGTTTTTGACACTAGT 59.285 43.478 0.00 0.00 0.00 2.57
5559 5886 4.065789 GGAGGGAGTTTTTGACACTAGTG 58.934 47.826 21.44 21.44 0.00 2.74
5597 5924 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
5781 6109 7.110810 AGAGTAAGTAATGGGCTAGGTTTTTC 58.889 38.462 0.00 0.00 0.00 2.29
5864 6192 4.991153 TCATATCTCCGTGCCTATCATC 57.009 45.455 0.00 0.00 0.00 2.92
5865 6193 3.701542 TCATATCTCCGTGCCTATCATCC 59.298 47.826 0.00 0.00 0.00 3.51
5870 6198 2.562738 CTCCGTGCCTATCATCCATGTA 59.437 50.000 0.00 0.00 0.00 2.29
6117 6448 3.111853 ACTCATTGACTCTCGCAAACA 57.888 42.857 0.00 0.00 0.00 2.83
6430 6792 5.669447 AGGTGTCCAAGGATCTTAGATGATT 59.331 40.000 0.00 0.00 0.00 2.57
6575 6937 2.684374 GGCATGACACATGCATTGTCTA 59.316 45.455 28.98 19.45 46.21 2.59
6652 7014 7.279536 GGTAGAAAAAGTGTAGTGGCCTTATAC 59.720 40.741 3.32 5.49 0.00 1.47
7058 7422 3.190849 CGGTGATGCGTGCTCAGG 61.191 66.667 0.00 0.00 0.00 3.86
7232 7596 5.587388 ACATTGCAGTGCTATTGCTAATT 57.413 34.783 17.60 0.00 42.02 1.40
7234 7598 3.425577 TGCAGTGCTATTGCTAATTGC 57.574 42.857 17.60 5.88 42.02 3.56
7243 7607 7.172875 AGTGCTATTGCTAATTGCTCTATCTTG 59.827 37.037 13.49 0.00 40.06 3.02
7345 7709 3.073798 TGGTTTTCTCTGCCACCTCAATA 59.926 43.478 0.00 0.00 0.00 1.90
7753 8117 4.978083 TTCAGACTACCGGTGTCTATTC 57.022 45.455 27.93 10.78 42.21 1.75
7765 8129 5.282510 CGGTGTCTATTCCTTTGCTAGTAG 58.717 45.833 0.00 0.00 0.00 2.57
7781 8145 5.105635 TGCTAGTAGTACATGTTACCGCTTT 60.106 40.000 2.30 0.00 0.00 3.51
7813 8186 0.251297 ATTGCAAGTGGCTGGCACTA 60.251 50.000 33.08 20.09 40.47 2.74
7816 8189 0.890996 GCAAGTGGCTGGCACTAGTT 60.891 55.000 33.08 17.91 40.25 2.24
7817 8190 0.877071 CAAGTGGCTGGCACTAGTTG 59.123 55.000 33.08 24.33 31.85 3.16
7818 8191 0.474184 AAGTGGCTGGCACTAGTTGT 59.526 50.000 33.08 17.19 31.85 3.32
7819 8192 1.348064 AGTGGCTGGCACTAGTTGTA 58.652 50.000 32.20 0.00 0.00 2.41
7820 8193 1.002087 AGTGGCTGGCACTAGTTGTAC 59.998 52.381 32.20 4.86 0.00 2.90
7821 8194 1.002087 GTGGCTGGCACTAGTTGTACT 59.998 52.381 25.10 0.00 0.00 2.73
7822 8195 1.697432 TGGCTGGCACTAGTTGTACTT 59.303 47.619 0.00 0.00 0.00 2.24
7823 8196 2.076863 GGCTGGCACTAGTTGTACTTG 58.923 52.381 0.00 0.00 0.00 3.16
7824 8197 2.550208 GGCTGGCACTAGTTGTACTTGT 60.550 50.000 0.00 0.00 34.63 3.16
7949 8322 9.590088 GTTTTATTAAAACTCAACAGTCTACGG 57.410 33.333 19.96 0.00 45.55 4.02
7950 8323 9.545105 TTTTATTAAAACTCAACAGTCTACGGA 57.455 29.630 0.00 0.00 29.93 4.69
7951 8324 9.545105 TTTATTAAAACTCAACAGTCTACGGAA 57.455 29.630 0.00 0.00 29.93 4.30
7952 8325 9.715121 TTATTAAAACTCAACAGTCTACGGAAT 57.285 29.630 0.00 0.00 29.93 3.01
7954 8327 8.524870 TTAAAACTCAACAGTCTACGGAATAC 57.475 34.615 0.00 0.00 29.93 1.89
7955 8328 5.717078 AACTCAACAGTCTACGGAATACA 57.283 39.130 0.00 0.00 29.93 2.29
7956 8329 5.717078 ACTCAACAGTCTACGGAATACAA 57.283 39.130 0.00 0.00 0.00 2.41
7957 8330 6.092955 ACTCAACAGTCTACGGAATACAAA 57.907 37.500 0.00 0.00 0.00 2.83
7958 8331 6.698380 ACTCAACAGTCTACGGAATACAAAT 58.302 36.000 0.00 0.00 0.00 2.32
7959 8332 6.590292 ACTCAACAGTCTACGGAATACAAATG 59.410 38.462 0.00 0.00 0.00 2.32
7960 8333 6.693466 TCAACAGTCTACGGAATACAAATGA 58.307 36.000 0.00 0.00 0.00 2.57
7961 8334 7.327975 TCAACAGTCTACGGAATACAAATGAT 58.672 34.615 0.00 0.00 0.00 2.45
7962 8335 8.471609 TCAACAGTCTACGGAATACAAATGATA 58.528 33.333 0.00 0.00 0.00 2.15
7963 8336 9.261180 CAACAGTCTACGGAATACAAATGATAT 57.739 33.333 0.00 0.00 0.00 1.63
7964 8337 9.477484 AACAGTCTACGGAATACAAATGATATC 57.523 33.333 0.00 0.00 0.00 1.63
7965 8338 8.861086 ACAGTCTACGGAATACAAATGATATCT 58.139 33.333 3.98 0.00 0.00 1.98
7966 8339 9.133627 CAGTCTACGGAATACAAATGATATCTG 57.866 37.037 3.98 0.00 0.00 2.90
7967 8340 8.307483 AGTCTACGGAATACAAATGATATCTGG 58.693 37.037 3.98 0.00 0.00 3.86
7968 8341 8.304596 GTCTACGGAATACAAATGATATCTGGA 58.695 37.037 3.98 0.00 0.00 3.86
7969 8342 8.304596 TCTACGGAATACAAATGATATCTGGAC 58.695 37.037 3.98 0.00 0.00 4.02
7970 8343 5.926542 ACGGAATACAAATGATATCTGGACG 59.073 40.000 3.98 0.00 0.00 4.79
7971 8344 5.348724 CGGAATACAAATGATATCTGGACGG 59.651 44.000 3.98 0.00 0.00 4.79
7972 8345 6.464222 GGAATACAAATGATATCTGGACGGA 58.536 40.000 3.98 0.00 0.00 4.69
7973 8346 6.934645 GGAATACAAATGATATCTGGACGGAA 59.065 38.462 3.98 0.00 0.00 4.30
7974 8347 7.095187 GGAATACAAATGATATCTGGACGGAAC 60.095 40.741 3.98 0.00 0.00 3.62
7975 8348 5.359194 ACAAATGATATCTGGACGGAACT 57.641 39.130 3.98 0.00 0.00 3.01
7976 8349 5.360591 ACAAATGATATCTGGACGGAACTC 58.639 41.667 3.98 0.00 0.00 3.01
7977 8350 5.129485 ACAAATGATATCTGGACGGAACTCT 59.871 40.000 3.98 0.00 0.00 3.24
7978 8351 6.323996 ACAAATGATATCTGGACGGAACTCTA 59.676 38.462 3.98 0.00 0.00 2.43
7979 8352 6.582677 AATGATATCTGGACGGAACTCTAG 57.417 41.667 3.98 0.00 0.00 2.43
7980 8353 3.821600 TGATATCTGGACGGAACTCTAGC 59.178 47.826 3.98 0.00 0.00 3.42
7981 8354 1.404843 ATCTGGACGGAACTCTAGCC 58.595 55.000 0.00 0.00 0.00 3.93
7982 8355 0.039180 TCTGGACGGAACTCTAGCCA 59.961 55.000 0.00 0.00 0.00 4.75
7983 8356 0.173708 CTGGACGGAACTCTAGCCAC 59.826 60.000 0.00 0.00 0.00 5.01
7984 8357 0.541063 TGGACGGAACTCTAGCCACA 60.541 55.000 0.00 0.00 0.00 4.17
7985 8358 0.108756 GGACGGAACTCTAGCCACAC 60.109 60.000 0.00 0.00 0.00 3.82
7986 8359 0.456312 GACGGAACTCTAGCCACACG 60.456 60.000 0.00 0.00 0.00 4.49
7987 8360 1.177256 ACGGAACTCTAGCCACACGT 61.177 55.000 0.00 0.00 0.00 4.49
7988 8361 0.732880 CGGAACTCTAGCCACACGTG 60.733 60.000 15.48 15.48 0.00 4.49
7989 8362 0.601558 GGAACTCTAGCCACACGTGA 59.398 55.000 25.01 0.00 0.00 4.35
7990 8363 1.669211 GGAACTCTAGCCACACGTGAC 60.669 57.143 25.01 11.19 0.00 3.67
7991 8364 0.039437 AACTCTAGCCACACGTGACG 60.039 55.000 25.01 12.64 0.00 4.35
7992 8365 0.887836 ACTCTAGCCACACGTGACGA 60.888 55.000 25.01 6.59 0.00 4.20
7993 8366 0.454620 CTCTAGCCACACGTGACGAC 60.455 60.000 25.01 8.51 0.00 4.34
7994 8367 1.443872 CTAGCCACACGTGACGACC 60.444 63.158 25.01 5.49 0.00 4.79
7995 8368 2.814183 CTAGCCACACGTGACGACCC 62.814 65.000 25.01 4.03 0.00 4.46
7996 8369 4.595538 GCCACACGTGACGACCCA 62.596 66.667 25.01 0.00 0.00 4.51
7997 8370 2.660552 CCACACGTGACGACCCAC 60.661 66.667 25.01 0.00 0.00 4.61
7998 8371 2.415843 CACACGTGACGACCCACT 59.584 61.111 25.01 0.00 35.02 4.00
7999 8372 1.949133 CACACGTGACGACCCACTG 60.949 63.158 25.01 2.17 35.02 3.66
8000 8373 2.355837 CACGTGACGACCCACTGG 60.356 66.667 13.70 0.00 35.02 4.00
8012 8385 2.583143 ACCCACTGGTAAAGAAACAGC 58.417 47.619 0.00 0.00 45.45 4.40
8013 8386 1.535462 CCCACTGGTAAAGAAACAGCG 59.465 52.381 0.00 0.00 35.70 5.18
8014 8387 1.535462 CCACTGGTAAAGAAACAGCGG 59.465 52.381 0.00 0.00 35.70 5.52
8015 8388 1.069227 CACTGGTAAAGAAACAGCGGC 60.069 52.381 0.00 0.00 35.70 6.53
8016 8389 0.521735 CTGGTAAAGAAACAGCGGCC 59.478 55.000 0.00 0.00 0.00 6.13
8017 8390 0.109723 TGGTAAAGAAACAGCGGCCT 59.890 50.000 0.00 0.00 0.00 5.19
8018 8391 1.244816 GGTAAAGAAACAGCGGCCTT 58.755 50.000 0.00 0.00 0.00 4.35
8019 8392 2.224572 TGGTAAAGAAACAGCGGCCTTA 60.225 45.455 0.00 0.00 0.00 2.69
8020 8393 2.418976 GGTAAAGAAACAGCGGCCTTAG 59.581 50.000 0.00 0.00 0.00 2.18
8021 8394 0.881796 AAAGAAACAGCGGCCTTAGC 59.118 50.000 0.00 0.00 38.76 3.09
8023 8396 0.902531 AGAAACAGCGGCCTTAGCTA 59.097 50.000 0.00 0.00 44.06 3.32
8024 8397 1.134670 AGAAACAGCGGCCTTAGCTAG 60.135 52.381 0.00 0.35 44.06 3.42
8025 8398 0.613777 AAACAGCGGCCTTAGCTAGT 59.386 50.000 0.00 0.99 44.06 2.57
8026 8399 0.108138 AACAGCGGCCTTAGCTAGTG 60.108 55.000 0.00 0.00 44.06 2.74
8027 8400 1.884926 CAGCGGCCTTAGCTAGTGC 60.885 63.158 0.00 7.78 44.06 4.40
8028 8401 2.186903 GCGGCCTTAGCTAGTGCA 59.813 61.111 15.76 0.00 42.74 4.57
8029 8402 1.227674 GCGGCCTTAGCTAGTGCAT 60.228 57.895 15.76 0.00 42.74 3.96
8030 8403 1.502163 GCGGCCTTAGCTAGTGCATG 61.502 60.000 15.76 9.92 42.74 4.06
8031 8404 0.104855 CGGCCTTAGCTAGTGCATGA 59.895 55.000 15.76 0.00 42.74 3.07
8032 8405 1.871408 CGGCCTTAGCTAGTGCATGAG 60.871 57.143 15.76 0.00 42.74 2.90
8033 8406 1.224965 GCCTTAGCTAGTGCATGAGC 58.775 55.000 13.43 13.43 42.74 4.26
8035 8408 2.744494 GCCTTAGCTAGTGCATGAGCTT 60.744 50.000 24.99 12.80 46.99 3.74
8036 8409 3.129871 CCTTAGCTAGTGCATGAGCTTC 58.870 50.000 24.99 0.00 46.99 3.86
8037 8410 3.431346 CCTTAGCTAGTGCATGAGCTTCA 60.431 47.826 24.99 14.25 46.99 3.02
8038 8411 2.775911 AGCTAGTGCATGAGCTTCAA 57.224 45.000 17.12 0.00 46.99 2.69
8039 8412 3.063510 AGCTAGTGCATGAGCTTCAAA 57.936 42.857 17.12 0.00 46.99 2.69
8040 8413 3.008330 AGCTAGTGCATGAGCTTCAAAG 58.992 45.455 17.12 0.00 46.99 2.77
8041 8414 2.746362 GCTAGTGCATGAGCTTCAAAGT 59.254 45.455 13.89 0.00 42.74 2.66
8042 8415 3.190118 GCTAGTGCATGAGCTTCAAAGTT 59.810 43.478 13.89 0.00 42.74 2.66
8043 8416 3.637998 AGTGCATGAGCTTCAAAGTTG 57.362 42.857 0.00 0.00 42.74 3.16
8044 8417 2.056577 GTGCATGAGCTTCAAAGTTGC 58.943 47.619 0.00 0.00 42.74 4.17
8045 8418 1.958579 TGCATGAGCTTCAAAGTTGCT 59.041 42.857 0.00 0.00 42.74 3.91
8050 8423 1.809547 GAGCTTCAAAGTTGCTCTCCC 59.190 52.381 6.92 0.00 46.69 4.30
8051 8424 1.423161 AGCTTCAAAGTTGCTCTCCCT 59.577 47.619 0.00 0.00 30.41 4.20
8052 8425 2.639839 AGCTTCAAAGTTGCTCTCCCTA 59.360 45.455 0.00 0.00 30.41 3.53
8053 8426 3.006247 GCTTCAAAGTTGCTCTCCCTAG 58.994 50.000 0.00 0.00 0.00 3.02
8054 8427 3.307059 GCTTCAAAGTTGCTCTCCCTAGA 60.307 47.826 0.00 0.00 0.00 2.43
8055 8428 3.963428 TCAAAGTTGCTCTCCCTAGAC 57.037 47.619 0.00 0.00 0.00 2.59
8056 8429 3.511477 TCAAAGTTGCTCTCCCTAGACT 58.489 45.455 0.00 0.00 0.00 3.24
8057 8430 3.511934 TCAAAGTTGCTCTCCCTAGACTC 59.488 47.826 0.00 0.00 0.00 3.36
8058 8431 2.909504 AGTTGCTCTCCCTAGACTCA 57.090 50.000 0.00 0.00 0.00 3.41
8059 8432 3.176924 AGTTGCTCTCCCTAGACTCAA 57.823 47.619 0.00 0.00 0.00 3.02
8060 8433 3.511477 AGTTGCTCTCCCTAGACTCAAA 58.489 45.455 0.00 0.00 0.00 2.69
8061 8434 3.513515 AGTTGCTCTCCCTAGACTCAAAG 59.486 47.826 0.00 0.00 0.00 2.77
8062 8435 1.827969 TGCTCTCCCTAGACTCAAAGC 59.172 52.381 0.00 0.00 0.00 3.51
8063 8436 1.827969 GCTCTCCCTAGACTCAAAGCA 59.172 52.381 0.00 0.00 0.00 3.91
8064 8437 2.234908 GCTCTCCCTAGACTCAAAGCAA 59.765 50.000 0.00 0.00 0.00 3.91
8065 8438 3.307059 GCTCTCCCTAGACTCAAAGCAAA 60.307 47.826 0.00 0.00 0.00 3.68
8066 8439 4.804261 GCTCTCCCTAGACTCAAAGCAAAA 60.804 45.833 0.00 0.00 0.00 2.44
8067 8440 5.304686 TCTCCCTAGACTCAAAGCAAAAA 57.695 39.130 0.00 0.00 0.00 1.94
8089 8462 7.923414 AAAATTACATCACTGAACTCCCTAC 57.077 36.000 0.00 0.00 0.00 3.18
8090 8463 6.875972 AATTACATCACTGAACTCCCTACT 57.124 37.500 0.00 0.00 0.00 2.57
8091 8464 5.916661 TTACATCACTGAACTCCCTACTC 57.083 43.478 0.00 0.00 0.00 2.59
8092 8465 3.100671 ACATCACTGAACTCCCTACTCC 58.899 50.000 0.00 0.00 0.00 3.85
8093 8466 3.245803 ACATCACTGAACTCCCTACTCCT 60.246 47.826 0.00 0.00 0.00 3.69
8094 8467 4.017407 ACATCACTGAACTCCCTACTCCTA 60.017 45.833 0.00 0.00 0.00 2.94
8095 8468 4.883021 TCACTGAACTCCCTACTCCTAT 57.117 45.455 0.00 0.00 0.00 2.57
8096 8469 4.537751 TCACTGAACTCCCTACTCCTATG 58.462 47.826 0.00 0.00 0.00 2.23
8097 8470 3.068873 CACTGAACTCCCTACTCCTATGC 59.931 52.174 0.00 0.00 0.00 3.14
8098 8471 3.052490 ACTGAACTCCCTACTCCTATGCT 60.052 47.826 0.00 0.00 0.00 3.79
8099 8472 3.964031 CTGAACTCCCTACTCCTATGCTT 59.036 47.826 0.00 0.00 0.00 3.91
8100 8473 5.138758 TGAACTCCCTACTCCTATGCTTA 57.861 43.478 0.00 0.00 0.00 3.09
8101 8474 5.525484 TGAACTCCCTACTCCTATGCTTAA 58.475 41.667 0.00 0.00 0.00 1.85
8102 8475 6.143915 TGAACTCCCTACTCCTATGCTTAAT 58.856 40.000 0.00 0.00 0.00 1.40
8103 8476 6.615726 TGAACTCCCTACTCCTATGCTTAATT 59.384 38.462 0.00 0.00 0.00 1.40
8104 8477 7.127339 TGAACTCCCTACTCCTATGCTTAATTT 59.873 37.037 0.00 0.00 0.00 1.82
8105 8478 7.068686 ACTCCCTACTCCTATGCTTAATTTC 57.931 40.000 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.947433 TCAAATGCCATTGAGATTTTTCTTTAT 57.053 25.926 0.00 0.00 34.50 1.40
16 17 6.652062 GGTCAAATGCCATTGAGATTTTTCTT 59.348 34.615 1.83 0.00 39.84 2.52
18 19 5.062558 CGGTCAAATGCCATTGAGATTTTTC 59.937 40.000 1.83 0.00 39.84 2.29
19 20 4.931002 CGGTCAAATGCCATTGAGATTTTT 59.069 37.500 1.83 0.00 39.84 1.94
20 21 4.220382 TCGGTCAAATGCCATTGAGATTTT 59.780 37.500 1.83 0.00 39.84 1.82
32 33 1.408422 GCAAGTGTTCGGTCAAATGC 58.592 50.000 0.00 0.00 0.00 3.56
40 41 3.777925 CGCTCGGCAAGTGTTCGG 61.778 66.667 0.00 0.00 0.00 4.30
41 42 3.036084 ACGCTCGGCAAGTGTTCG 61.036 61.111 0.00 0.00 46.62 3.95
74 75 1.153449 TCCGCCCATGTCGATGTTC 60.153 57.895 6.23 0.00 0.00 3.18
75 76 1.449601 GTCCGCCCATGTCGATGTT 60.450 57.895 6.23 0.00 0.00 2.71
81 82 1.300697 GGTATCGTCCGCCCATGTC 60.301 63.158 0.00 0.00 0.00 3.06
94 96 5.236911 CGGATCCGTCTATAGCTTAGGTATC 59.763 48.000 26.35 0.00 34.35 2.24
106 108 0.541998 TGCATCCCGGATCCGTCTAT 60.542 55.000 31.22 18.44 37.81 1.98
107 109 0.757561 TTGCATCCCGGATCCGTCTA 60.758 55.000 31.22 17.01 37.81 2.59
108 110 2.063979 TTGCATCCCGGATCCGTCT 61.064 57.895 31.22 13.47 37.81 4.18
111 113 2.967076 CGTTGCATCCCGGATCCG 60.967 66.667 27.65 27.65 39.44 4.18
116 118 2.202878 ATCGTCGTTGCATCCCGG 60.203 61.111 0.00 0.00 0.00 5.73
127 129 1.654105 GCACCTTGTACTTCATCGTCG 59.346 52.381 0.00 0.00 0.00 5.12
138 140 0.753867 TTCCACTCACGCACCTTGTA 59.246 50.000 0.00 0.00 0.00 2.41
148 150 2.521105 ACTACCGTTGTTCCACTCAC 57.479 50.000 0.00 0.00 0.00 3.51
157 159 5.121142 CCAATTTTGATCGTACTACCGTTGT 59.879 40.000 0.00 0.00 0.00 3.32
158 160 5.349270 TCCAATTTTGATCGTACTACCGTTG 59.651 40.000 0.00 0.00 0.00 4.10
160 162 4.866486 GTCCAATTTTGATCGTACTACCGT 59.134 41.667 0.00 0.00 0.00 4.83
168 170 2.097466 GCCGATGTCCAATTTTGATCGT 59.903 45.455 0.00 0.00 33.32 3.73
172 174 0.808125 CCGCCGATGTCCAATTTTGA 59.192 50.000 0.00 0.00 0.00 2.69
173 175 0.525761 ACCGCCGATGTCCAATTTTG 59.474 50.000 0.00 0.00 0.00 2.44
177 180 1.745115 CACACCGCCGATGTCCAAT 60.745 57.895 0.00 0.00 0.00 3.16
179 182 4.386951 CCACACCGCCGATGTCCA 62.387 66.667 0.00 0.00 0.00 4.02
182 185 2.575893 TACACCACACCGCCGATGT 61.576 57.895 0.00 0.00 0.00 3.06
183 186 2.098233 GTACACCACACCGCCGATG 61.098 63.158 0.00 0.00 0.00 3.84
184 187 2.263540 GTACACCACACCGCCGAT 59.736 61.111 0.00 0.00 0.00 4.18
186 189 3.636313 ATCGTACACCACACCGCCG 62.636 63.158 0.00 0.00 0.00 6.46
188 191 2.098233 CCATCGTACACCACACCGC 61.098 63.158 0.00 0.00 0.00 5.68
190 193 2.098233 CGCCATCGTACACCACACC 61.098 63.158 0.00 0.00 0.00 4.16
201 204 2.885644 CCAAGACCGTCGCCATCG 60.886 66.667 0.00 0.00 0.00 3.84
203 206 2.047274 CACCAAGACCGTCGCCAT 60.047 61.111 0.00 0.00 0.00 4.40
204 207 4.308458 CCACCAAGACCGTCGCCA 62.308 66.667 0.00 0.00 0.00 5.69
207 210 2.357034 CACCCACCAAGACCGTCG 60.357 66.667 0.00 0.00 0.00 5.12
208 211 2.668550 GCACCCACCAAGACCGTC 60.669 66.667 0.00 0.00 0.00 4.79
231 235 1.898472 TGTTCCTCCTCTCTTGCTCTG 59.102 52.381 0.00 0.00 0.00 3.35
242 246 3.566351 CTTTTCCCACTTTGTTCCTCCT 58.434 45.455 0.00 0.00 0.00 3.69
250 254 5.337578 TTTGAAGTCCTTTTCCCACTTTG 57.662 39.130 0.00 0.00 30.32 2.77
251 255 4.405680 CCTTTGAAGTCCTTTTCCCACTTT 59.594 41.667 0.00 0.00 30.32 2.66
252 256 3.960755 CCTTTGAAGTCCTTTTCCCACTT 59.039 43.478 0.00 0.00 32.93 3.16
261 265 1.569072 ACACACCCCTTTGAAGTCCTT 59.431 47.619 0.00 0.00 0.00 3.36
265 269 0.755327 GCCACACACCCCTTTGAAGT 60.755 55.000 0.00 0.00 0.00 3.01
269 273 2.917227 GGGCCACACACCCCTTTG 60.917 66.667 4.39 0.00 42.01 2.77
270 274 4.596585 CGGGCCACACACCCCTTT 62.597 66.667 4.39 0.00 45.37 3.11
288 296 1.278637 CGTCAAACTTCGGCACACC 59.721 57.895 0.00 0.00 0.00 4.16
294 302 0.232303 GCTGACACGTCAAACTTCGG 59.768 55.000 0.92 0.00 39.39 4.30
296 304 1.933853 ACAGCTGACACGTCAAACTTC 59.066 47.619 23.35 0.00 39.39 3.01
297 305 1.933853 GACAGCTGACACGTCAAACTT 59.066 47.619 23.35 0.00 39.39 2.66
301 309 0.249447 CTGGACAGCTGACACGTCAA 60.249 55.000 23.35 0.00 39.39 3.18
313 321 3.492102 TTTTTGGGAGAGTCTGGACAG 57.508 47.619 0.00 0.00 0.00 3.51
350 362 6.096141 ACACATTTACCATGACACACTTCAAA 59.904 34.615 0.00 0.00 0.00 2.69
353 365 5.689383 ACACATTTACCATGACACACTTC 57.311 39.130 0.00 0.00 0.00 3.01
356 368 6.533367 ACAAAAACACATTTACCATGACACAC 59.467 34.615 0.00 0.00 0.00 3.82
364 376 5.578005 TTCGGACAAAAACACATTTACCA 57.422 34.783 0.00 0.00 0.00 3.25
380 392 6.088824 TCAAGACTCGTTTACTATTTCGGAC 58.911 40.000 0.00 0.00 0.00 4.79
391 403 6.802608 TCACTCTTTTCTCAAGACTCGTTTA 58.197 36.000 0.00 0.00 0.00 2.01
495 507 2.823154 TGGTTTTATTGCCACACCTAGC 59.177 45.455 0.00 0.00 0.00 3.42
828 850 0.459899 TATGGTGTGGCTACTGCTCG 59.540 55.000 0.64 0.00 39.59 5.03
1117 1176 3.054728 TCCGAGCAAAATAATCACAGGGA 60.055 43.478 0.00 0.00 0.00 4.20
1118 1177 3.278574 TCCGAGCAAAATAATCACAGGG 58.721 45.455 0.00 0.00 0.00 4.45
1157 1216 1.735376 AATCCACGTAGATCCGCGCT 61.735 55.000 5.56 0.00 0.00 5.92
1383 1442 2.190488 AAAGGGAGAGGAAGCGGCTG 62.190 60.000 1.81 0.00 0.00 4.85
1441 1501 1.807226 CTCATACACACGGGCTCGA 59.193 57.895 15.95 0.00 40.11 4.04
1494 1554 6.018016 CACATCGATCACATGGCAAATACTTA 60.018 38.462 0.00 0.00 0.00 2.24
1534 1594 2.857152 GTGTGATCTGATTCTCGCTGTC 59.143 50.000 0.00 0.00 0.00 3.51
1663 1723 1.084289 GCCACCGTCCAAACTATCAC 58.916 55.000 0.00 0.00 0.00 3.06
1744 1829 1.665679 AGTGAAACGATTGGCATAGCG 59.334 47.619 5.94 5.94 45.86 4.26
1793 1878 0.472471 TAGCCCATAAAAGCCGGGAG 59.528 55.000 2.18 0.00 43.21 4.30
1794 1879 0.181824 GTAGCCCATAAAAGCCGGGA 59.818 55.000 2.18 0.00 43.21 5.14
1795 1880 0.182775 AGTAGCCCATAAAAGCCGGG 59.817 55.000 2.18 0.00 43.42 5.73
1796 1881 2.922740 TAGTAGCCCATAAAAGCCGG 57.077 50.000 0.00 0.00 0.00 6.13
1797 1882 3.805207 ACTTAGTAGCCCATAAAAGCCG 58.195 45.455 0.00 0.00 0.00 5.52
1920 2019 2.299013 AGTTCATGCGACTACCAAGACA 59.701 45.455 0.35 0.00 0.00 3.41
2300 2440 9.609346 GGTTGAACTAAGATTATTGCCTAAGTA 57.391 33.333 0.00 0.00 0.00 2.24
2301 2441 8.329502 AGGTTGAACTAAGATTATTGCCTAAGT 58.670 33.333 0.00 0.00 0.00 2.24
2302 2442 8.738645 AGGTTGAACTAAGATTATTGCCTAAG 57.261 34.615 0.00 0.00 0.00 2.18
2340 2480 6.882768 ATTCAACTGGAGGAGATAAACTCT 57.117 37.500 0.00 0.00 44.37 3.24
2562 2703 1.991264 CTCAAGAGTGTGACTGATGCG 59.009 52.381 0.00 0.00 0.00 4.73
2737 2878 6.839820 AAGAGTAAGTCCAAACAGTTAACG 57.160 37.500 0.00 0.00 0.00 3.18
2968 3109 0.039256 CACCCTGCATTTCGTTGGTG 60.039 55.000 0.00 0.00 37.51 4.17
3121 3262 1.373497 GGCGTATGGATGAGGCGAG 60.373 63.158 0.00 0.00 0.00 5.03
3139 3280 4.506758 CCATTTGCCAATTTGTAAGAGGG 58.493 43.478 0.00 0.00 0.00 4.30
3166 3307 2.531483 ATCCAGGGACTACAGGCGGT 62.531 60.000 0.00 0.00 36.02 5.68
3286 3427 8.092687 TGAGACCTGATACTTAACCAAAACTAC 58.907 37.037 0.00 0.00 0.00 2.73
3371 3512 9.537192 CATATTCACCAATCATTGCTTTACATT 57.463 29.630 0.00 0.00 0.00 2.71
3507 3649 4.261994 GGTTTACTGAAGCCTGCATCAAAA 60.262 41.667 0.00 0.00 33.29 2.44
3951 4093 1.893801 ACGCAGCACTAGTTCCTACTT 59.106 47.619 0.00 0.00 35.78 2.24
4020 4162 9.150348 AGTTGTTTGTTTCAAATTACCAGAAAG 57.850 29.630 0.00 0.00 32.48 2.62
4081 4223 5.242615 CGGATGGAGAAGATTATCACTGAGA 59.757 44.000 0.00 0.00 0.00 3.27
4117 4259 8.800332 GGTTATCGGTTTGGTAGATAGATCTAA 58.200 37.037 6.52 0.00 40.77 2.10
4145 4287 2.969628 AGGTGAAATGCTACTCCTCG 57.030 50.000 0.00 0.00 0.00 4.63
4153 4295 6.322201 CCCACATCTTTAATAGGTGAAATGCT 59.678 38.462 5.08 0.00 37.13 3.79
4327 4471 1.962100 TCAGCCATCAAACATGCAACA 59.038 42.857 0.00 0.00 0.00 3.33
4338 4482 1.139654 GTGCCTCATACTCAGCCATCA 59.860 52.381 0.00 0.00 0.00 3.07
4339 4483 1.542108 GGTGCCTCATACTCAGCCATC 60.542 57.143 0.00 0.00 0.00 3.51
4538 4858 8.784043 TCATGAGAGCTTCATTCAATTATGATG 58.216 33.333 8.19 0.00 44.14 3.07
4633 4953 9.321562 TCTTCTAAGTACAAACTAAACAACCTG 57.678 33.333 0.00 0.00 33.75 4.00
4866 5188 7.309438 GCCAAGAATTTAGTTGACAGGAAAGAT 60.309 37.037 0.00 0.00 0.00 2.40
4913 5235 6.139671 ACCATATCTGTCTCATGAACTACCT 58.860 40.000 0.00 0.00 0.00 3.08
5008 5330 0.256752 TGAGGATCTTGGCCACATGG 59.743 55.000 3.88 0.00 34.92 3.66
5084 5406 3.278668 AGATCTTGACAGCAATCTGGG 57.721 47.619 0.00 0.00 44.54 4.45
5091 5413 6.698329 CACAAATTTTGAAGATCTTGACAGCA 59.302 34.615 14.00 0.72 0.00 4.41
5121 5443 1.460743 CATATGCTGGATTACACGGCG 59.539 52.381 4.80 4.80 43.09 6.46
5305 5629 2.016318 CCTATCAATGCGCACCTTCAA 58.984 47.619 14.90 0.00 0.00 2.69
5369 5693 6.991531 AGCTTCATCTCAGAATGGAATACTTC 59.008 38.462 0.00 0.00 36.16 3.01
5389 5713 9.643652 CAAGTTATTCGATTATTCTTCAGCTTC 57.356 33.333 0.00 0.00 0.00 3.86
5507 5834 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
5508 5835 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
5509 5836 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
5510 5837 8.149973 TCCCATAATATAAGAGCGTTTTTGAC 57.850 34.615 0.00 0.00 0.00 3.18
5511 5838 8.783093 CATCCCATAATATAAGAGCGTTTTTGA 58.217 33.333 0.00 0.00 0.00 2.69
5512 5839 8.023128 CCATCCCATAATATAAGAGCGTTTTTG 58.977 37.037 0.00 0.00 0.00 2.44
5513 5840 7.942341 TCCATCCCATAATATAAGAGCGTTTTT 59.058 33.333 0.00 0.00 0.00 1.94
5514 5841 7.458397 TCCATCCCATAATATAAGAGCGTTTT 58.542 34.615 0.00 0.00 0.00 2.43
5515 5842 7.016153 TCCATCCCATAATATAAGAGCGTTT 57.984 36.000 0.00 0.00 0.00 3.60
5516 5843 6.352222 CCTCCATCCCATAATATAAGAGCGTT 60.352 42.308 0.00 0.00 0.00 4.84
5517 5844 5.129485 CCTCCATCCCATAATATAAGAGCGT 59.871 44.000 0.00 0.00 0.00 5.07
5518 5845 5.453903 CCCTCCATCCCATAATATAAGAGCG 60.454 48.000 0.00 0.00 0.00 5.03
5519 5846 5.667626 TCCCTCCATCCCATAATATAAGAGC 59.332 44.000 0.00 0.00 0.00 4.09
5520 5847 6.905776 ACTCCCTCCATCCCATAATATAAGAG 59.094 42.308 0.00 0.00 0.00 2.85
5521 5848 6.826727 ACTCCCTCCATCCCATAATATAAGA 58.173 40.000 0.00 0.00 0.00 2.10
5522 5849 7.516450 AACTCCCTCCATCCCATAATATAAG 57.484 40.000 0.00 0.00 0.00 1.73
5523 5850 7.905144 AAACTCCCTCCATCCCATAATATAA 57.095 36.000 0.00 0.00 0.00 0.98
5524 5851 7.905144 AAAACTCCCTCCATCCCATAATATA 57.095 36.000 0.00 0.00 0.00 0.86
5525 5852 6.803587 AAAACTCCCTCCATCCCATAATAT 57.196 37.500 0.00 0.00 0.00 1.28
5526 5853 6.161348 TCAAAAACTCCCTCCATCCCATAATA 59.839 38.462 0.00 0.00 0.00 0.98
5527 5854 5.043432 TCAAAAACTCCCTCCATCCCATAAT 60.043 40.000 0.00 0.00 0.00 1.28
5528 5855 4.293634 TCAAAAACTCCCTCCATCCCATAA 59.706 41.667 0.00 0.00 0.00 1.90
5529 5856 3.855599 TCAAAAACTCCCTCCATCCCATA 59.144 43.478 0.00 0.00 0.00 2.74
5530 5857 2.654385 TCAAAAACTCCCTCCATCCCAT 59.346 45.455 0.00 0.00 0.00 4.00
5531 5858 2.069775 TCAAAAACTCCCTCCATCCCA 58.930 47.619 0.00 0.00 0.00 4.37
5532 5859 2.225017 TGTCAAAAACTCCCTCCATCCC 60.225 50.000 0.00 0.00 0.00 3.85
5533 5860 2.820197 GTGTCAAAAACTCCCTCCATCC 59.180 50.000 0.00 0.00 0.00 3.51
5534 5861 3.756117 AGTGTCAAAAACTCCCTCCATC 58.244 45.455 0.00 0.00 0.00 3.51
5535 5862 3.884037 AGTGTCAAAAACTCCCTCCAT 57.116 42.857 0.00 0.00 0.00 3.41
5536 5863 3.714798 ACTAGTGTCAAAAACTCCCTCCA 59.285 43.478 0.00 0.00 0.00 3.86
5537 5864 4.065789 CACTAGTGTCAAAAACTCCCTCC 58.934 47.826 15.06 0.00 0.00 4.30
5538 5865 4.704965 ACACTAGTGTCAAAAACTCCCTC 58.295 43.478 22.95 0.00 40.24 4.30
5539 5866 4.772886 ACACTAGTGTCAAAAACTCCCT 57.227 40.909 22.95 0.00 40.24 4.20
5540 5867 5.608449 ACTACACTAGTGTCAAAAACTCCC 58.392 41.667 31.11 0.00 43.74 4.30
5553 5880 4.690122 AGCGTTTTTGACACTACACTAGT 58.310 39.130 0.00 0.00 40.28 2.57
5554 5881 4.982916 AGAGCGTTTTTGACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
5555 5882 4.940463 AGAGCGTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
5556 5883 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
5557 5884 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
5558 5885 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
5781 6109 6.531439 CACGCAATGATGATATGATGTACAG 58.469 40.000 0.33 0.00 0.00 2.74
5920 6248 5.975693 TGTTTACCTTATGGCAAGGAAAG 57.024 39.130 12.14 4.09 39.81 2.62
6430 6792 7.786943 AGAAAGGATATCACACTGATCTAGGAA 59.213 37.037 4.83 0.00 38.26 3.36
6485 6847 5.456921 AATCCAGGATACCACACTGATTT 57.543 39.130 1.02 0.00 34.21 2.17
6575 6937 9.537852 ACATGATTTATGCCCATGTTATATTCT 57.462 29.630 0.00 0.00 45.91 2.40
7058 7422 2.968675 ACCACCAGTTGTCGTATTAGC 58.031 47.619 0.00 0.00 0.00 3.09
7232 7596 6.486320 TGATTTCAACACAACAAGATAGAGCA 59.514 34.615 0.00 0.00 0.00 4.26
7234 7598 8.092521 ACTGATTTCAACACAACAAGATAGAG 57.907 34.615 0.00 0.00 0.00 2.43
7615 7979 8.778358 GTTTTAAGTCTCAAGTCTGTTGATGAT 58.222 33.333 0.00 0.00 0.00 2.45
7616 7980 7.987458 AGTTTTAAGTCTCAAGTCTGTTGATGA 59.013 33.333 0.00 0.00 0.00 2.92
7753 8117 5.747197 CGGTAACATGTACTACTAGCAAAGG 59.253 44.000 0.00 0.00 0.00 3.11
7765 8129 4.449743 TCAGTTCAAAGCGGTAACATGTAC 59.550 41.667 0.00 0.00 0.00 2.90
7781 8145 4.275689 CCACTTGCAATAACTGTCAGTTCA 59.724 41.667 21.40 10.70 39.51 3.18
7813 8186 8.575589 TGCATCAAATGATTTACAAGTACAACT 58.424 29.630 0.00 0.00 31.21 3.16
7816 8189 7.020602 CGTGCATCAAATGATTTACAAGTACA 58.979 34.615 0.00 0.00 31.21 2.90
7817 8190 6.021468 GCGTGCATCAAATGATTTACAAGTAC 60.021 38.462 0.00 0.00 31.21 2.73
7818 8191 6.027131 GCGTGCATCAAATGATTTACAAGTA 58.973 36.000 0.00 0.00 31.21 2.24
7819 8192 4.858692 GCGTGCATCAAATGATTTACAAGT 59.141 37.500 0.00 0.00 31.21 3.16
7820 8193 4.858140 TGCGTGCATCAAATGATTTACAAG 59.142 37.500 0.00 0.00 31.21 3.16
7821 8194 4.802999 TGCGTGCATCAAATGATTTACAA 58.197 34.783 0.00 0.00 31.21 2.41
7822 8195 4.431661 TGCGTGCATCAAATGATTTACA 57.568 36.364 0.00 0.00 31.21 2.41
7924 8297 9.545105 TCCGTAGACTGTTGAGTTTTAATAAAA 57.455 29.630 0.00 0.00 30.16 1.52
7925 8298 9.545105 TTCCGTAGACTGTTGAGTTTTAATAAA 57.455 29.630 0.00 0.00 30.16 1.40
7926 8299 9.715121 ATTCCGTAGACTGTTGAGTTTTAATAA 57.285 29.630 0.00 0.00 30.16 1.40
7928 8301 9.148104 GTATTCCGTAGACTGTTGAGTTTTAAT 57.852 33.333 0.00 0.00 30.16 1.40
7929 8302 8.143193 TGTATTCCGTAGACTGTTGAGTTTTAA 58.857 33.333 0.00 0.00 30.16 1.52
7930 8303 7.660112 TGTATTCCGTAGACTGTTGAGTTTTA 58.340 34.615 0.00 0.00 30.16 1.52
7931 8304 6.518493 TGTATTCCGTAGACTGTTGAGTTTT 58.482 36.000 0.00 0.00 30.16 2.43
7932 8305 6.092955 TGTATTCCGTAGACTGTTGAGTTT 57.907 37.500 0.00 0.00 30.16 2.66
7933 8306 5.717078 TGTATTCCGTAGACTGTTGAGTT 57.283 39.130 0.00 0.00 30.16 3.01
7934 8307 5.717078 TTGTATTCCGTAGACTGTTGAGT 57.283 39.130 0.00 0.00 33.98 3.41
7935 8308 6.811665 TCATTTGTATTCCGTAGACTGTTGAG 59.188 38.462 0.00 0.00 0.00 3.02
7936 8309 6.693466 TCATTTGTATTCCGTAGACTGTTGA 58.307 36.000 0.00 0.00 0.00 3.18
7937 8310 6.961359 TCATTTGTATTCCGTAGACTGTTG 57.039 37.500 0.00 0.00 0.00 3.33
7938 8311 9.477484 GATATCATTTGTATTCCGTAGACTGTT 57.523 33.333 0.00 0.00 0.00 3.16
7939 8312 8.861086 AGATATCATTTGTATTCCGTAGACTGT 58.139 33.333 5.32 0.00 0.00 3.55
7940 8313 9.133627 CAGATATCATTTGTATTCCGTAGACTG 57.866 37.037 5.32 0.00 0.00 3.51
7941 8314 8.307483 CCAGATATCATTTGTATTCCGTAGACT 58.693 37.037 5.32 0.00 0.00 3.24
7942 8315 8.304596 TCCAGATATCATTTGTATTCCGTAGAC 58.695 37.037 5.32 0.00 0.00 2.59
7943 8316 8.304596 GTCCAGATATCATTTGTATTCCGTAGA 58.695 37.037 5.32 0.00 0.00 2.59
7944 8317 7.273598 CGTCCAGATATCATTTGTATTCCGTAG 59.726 40.741 5.32 0.00 0.00 3.51
7945 8318 7.088272 CGTCCAGATATCATTTGTATTCCGTA 58.912 38.462 5.32 0.00 0.00 4.02
7946 8319 5.926542 CGTCCAGATATCATTTGTATTCCGT 59.073 40.000 5.32 0.00 0.00 4.69
7947 8320 5.348724 CCGTCCAGATATCATTTGTATTCCG 59.651 44.000 5.32 0.00 0.00 4.30
7948 8321 6.464222 TCCGTCCAGATATCATTTGTATTCC 58.536 40.000 5.32 0.00 0.00 3.01
7949 8322 7.657761 AGTTCCGTCCAGATATCATTTGTATTC 59.342 37.037 5.32 0.00 0.00 1.75
7950 8323 7.509546 AGTTCCGTCCAGATATCATTTGTATT 58.490 34.615 5.32 0.00 0.00 1.89
7951 8324 7.015682 AGAGTTCCGTCCAGATATCATTTGTAT 59.984 37.037 5.32 0.00 0.00 2.29
7952 8325 6.323996 AGAGTTCCGTCCAGATATCATTTGTA 59.676 38.462 5.32 0.00 0.00 2.41
7953 8326 5.129485 AGAGTTCCGTCCAGATATCATTTGT 59.871 40.000 5.32 0.00 0.00 2.83
7954 8327 5.605534 AGAGTTCCGTCCAGATATCATTTG 58.394 41.667 5.32 0.00 0.00 2.32
7955 8328 5.878406 AGAGTTCCGTCCAGATATCATTT 57.122 39.130 5.32 0.00 0.00 2.32
7956 8329 5.047660 GCTAGAGTTCCGTCCAGATATCATT 60.048 44.000 5.32 0.00 0.00 2.57
7957 8330 4.461081 GCTAGAGTTCCGTCCAGATATCAT 59.539 45.833 5.32 0.00 0.00 2.45
7958 8331 3.821600 GCTAGAGTTCCGTCCAGATATCA 59.178 47.826 5.32 0.00 0.00 2.15
7959 8332 3.191791 GGCTAGAGTTCCGTCCAGATATC 59.808 52.174 0.00 0.00 0.00 1.63
7960 8333 3.158676 GGCTAGAGTTCCGTCCAGATAT 58.841 50.000 0.00 0.00 0.00 1.63
7961 8334 2.092049 TGGCTAGAGTTCCGTCCAGATA 60.092 50.000 0.00 0.00 0.00 1.98
7962 8335 1.342076 TGGCTAGAGTTCCGTCCAGAT 60.342 52.381 0.00 0.00 0.00 2.90
7963 8336 0.039180 TGGCTAGAGTTCCGTCCAGA 59.961 55.000 0.00 0.00 0.00 3.86
7964 8337 0.173708 GTGGCTAGAGTTCCGTCCAG 59.826 60.000 0.00 0.00 0.00 3.86
7965 8338 0.541063 TGTGGCTAGAGTTCCGTCCA 60.541 55.000 0.00 0.00 0.00 4.02
7966 8339 0.108756 GTGTGGCTAGAGTTCCGTCC 60.109 60.000 0.00 0.00 0.00 4.79
7967 8340 0.456312 CGTGTGGCTAGAGTTCCGTC 60.456 60.000 0.00 0.00 0.00 4.79
7968 8341 1.177256 ACGTGTGGCTAGAGTTCCGT 61.177 55.000 0.00 0.00 0.00 4.69
7969 8342 0.732880 CACGTGTGGCTAGAGTTCCG 60.733 60.000 7.58 0.00 0.00 4.30
7970 8343 0.601558 TCACGTGTGGCTAGAGTTCC 59.398 55.000 16.51 0.00 0.00 3.62
7971 8344 1.699343 GTCACGTGTGGCTAGAGTTC 58.301 55.000 16.51 0.00 31.34 3.01
7972 8345 0.039437 CGTCACGTGTGGCTAGAGTT 60.039 55.000 16.51 0.00 31.96 3.01
7973 8346 0.887836 TCGTCACGTGTGGCTAGAGT 60.888 55.000 16.51 0.00 31.96 3.24
7974 8347 0.454620 GTCGTCACGTGTGGCTAGAG 60.455 60.000 16.51 0.00 31.96 2.43
7975 8348 1.577922 GTCGTCACGTGTGGCTAGA 59.422 57.895 16.51 4.56 31.96 2.43
7976 8349 1.443872 GGTCGTCACGTGTGGCTAG 60.444 63.158 16.51 2.23 31.96 3.42
7977 8350 2.646719 GGTCGTCACGTGTGGCTA 59.353 61.111 16.51 0.00 31.96 3.93
7978 8351 4.295119 GGGTCGTCACGTGTGGCT 62.295 66.667 16.51 0.00 31.96 4.75
7979 8352 4.595538 TGGGTCGTCACGTGTGGC 62.596 66.667 16.51 10.91 0.00 5.01
7980 8353 2.660552 GTGGGTCGTCACGTGTGG 60.661 66.667 16.51 8.81 0.00 4.17
7981 8354 1.949133 CAGTGGGTCGTCACGTGTG 60.949 63.158 16.51 9.78 42.10 3.82
7982 8355 2.415843 CAGTGGGTCGTCACGTGT 59.584 61.111 16.51 0.00 42.10 4.49
7983 8356 2.355837 CCAGTGGGTCGTCACGTG 60.356 66.667 9.94 9.94 42.10 4.49
7993 8366 1.535462 CGCTGTTTCTTTACCAGTGGG 59.465 52.381 15.21 0.00 41.29 4.61
7994 8367 1.535462 CCGCTGTTTCTTTACCAGTGG 59.465 52.381 7.91 7.91 46.79 4.00
7995 8368 1.069227 GCCGCTGTTTCTTTACCAGTG 60.069 52.381 0.00 0.00 36.67 3.66
7996 8369 1.235724 GCCGCTGTTTCTTTACCAGT 58.764 50.000 0.00 0.00 0.00 4.00
7997 8370 0.521735 GGCCGCTGTTTCTTTACCAG 59.478 55.000 0.00 0.00 0.00 4.00
7998 8371 0.109723 AGGCCGCTGTTTCTTTACCA 59.890 50.000 0.00 0.00 0.00 3.25
7999 8372 1.244816 AAGGCCGCTGTTTCTTTACC 58.755 50.000 0.00 0.00 0.00 2.85
8000 8373 2.159558 GCTAAGGCCGCTGTTTCTTTAC 60.160 50.000 0.00 0.00 0.00 2.01
8001 8374 2.081462 GCTAAGGCCGCTGTTTCTTTA 58.919 47.619 0.00 0.00 0.00 1.85
8002 8375 0.881796 GCTAAGGCCGCTGTTTCTTT 59.118 50.000 0.00 0.00 0.00 2.52
8003 8376 0.036875 AGCTAAGGCCGCTGTTTCTT 59.963 50.000 2.48 0.00 39.73 2.52
8004 8377 0.902531 TAGCTAAGGCCGCTGTTTCT 59.097 50.000 13.31 1.18 38.38 2.52
8005 8378 1.291132 CTAGCTAAGGCCGCTGTTTC 58.709 55.000 13.31 0.00 38.38 2.78
8006 8379 0.613777 ACTAGCTAAGGCCGCTGTTT 59.386 50.000 13.31 0.00 38.38 2.83
8007 8380 0.108138 CACTAGCTAAGGCCGCTGTT 60.108 55.000 13.31 0.00 38.38 3.16
8008 8381 1.517832 CACTAGCTAAGGCCGCTGT 59.482 57.895 13.31 7.03 38.38 4.40
8009 8382 1.884926 GCACTAGCTAAGGCCGCTG 60.885 63.158 13.31 6.48 38.38 5.18
8010 8383 1.690219 ATGCACTAGCTAAGGCCGCT 61.690 55.000 8.74 8.74 42.74 5.52
8011 8384 1.227674 ATGCACTAGCTAAGGCCGC 60.228 57.895 12.32 0.00 42.74 6.53
8012 8385 0.104855 TCATGCACTAGCTAAGGCCG 59.895 55.000 12.32 5.52 42.74 6.13
8013 8386 1.876322 CTCATGCACTAGCTAAGGCC 58.124 55.000 12.32 0.00 42.74 5.19
8014 8387 1.224965 GCTCATGCACTAGCTAAGGC 58.775 55.000 13.52 8.88 42.74 4.35
8020 8393 2.746362 ACTTTGAAGCTCATGCACTAGC 59.254 45.455 13.03 13.03 42.74 3.42
8021 8394 4.720090 CAACTTTGAAGCTCATGCACTAG 58.280 43.478 0.00 0.00 42.74 2.57
8022 8395 3.058016 GCAACTTTGAAGCTCATGCACTA 60.058 43.478 0.00 0.00 42.74 2.74
8023 8396 2.288030 GCAACTTTGAAGCTCATGCACT 60.288 45.455 0.00 0.00 42.74 4.40
8024 8397 2.056577 GCAACTTTGAAGCTCATGCAC 58.943 47.619 0.00 0.00 42.74 4.57
8025 8398 1.958579 AGCAACTTTGAAGCTCATGCA 59.041 42.857 0.00 0.00 42.74 3.96
8026 8399 2.719426 AGCAACTTTGAAGCTCATGC 57.281 45.000 0.00 0.00 32.05 4.06
8031 8404 1.423161 AGGGAGAGCAACTTTGAAGCT 59.577 47.619 0.00 0.00 42.17 3.74
8032 8405 1.902938 AGGGAGAGCAACTTTGAAGC 58.097 50.000 0.00 0.00 0.00 3.86
8033 8406 4.020662 AGTCTAGGGAGAGCAACTTTGAAG 60.021 45.833 0.00 0.00 30.20 3.02
8034 8407 3.904339 AGTCTAGGGAGAGCAACTTTGAA 59.096 43.478 0.00 0.00 30.20 2.69
8035 8408 3.511477 AGTCTAGGGAGAGCAACTTTGA 58.489 45.455 0.00 0.00 30.20 2.69
8036 8409 3.259374 TGAGTCTAGGGAGAGCAACTTTG 59.741 47.826 0.00 0.00 30.20 2.77
8037 8410 3.511477 TGAGTCTAGGGAGAGCAACTTT 58.489 45.455 0.00 0.00 30.20 2.66
8038 8411 3.176924 TGAGTCTAGGGAGAGCAACTT 57.823 47.619 0.00 0.00 30.20 2.66
8039 8412 2.909504 TGAGTCTAGGGAGAGCAACT 57.090 50.000 0.00 0.00 30.20 3.16
8040 8413 3.855858 CTTTGAGTCTAGGGAGAGCAAC 58.144 50.000 0.00 0.00 30.75 4.17
8041 8414 2.234908 GCTTTGAGTCTAGGGAGAGCAA 59.765 50.000 0.00 0.00 30.20 3.91
8042 8415 1.827969 GCTTTGAGTCTAGGGAGAGCA 59.172 52.381 0.00 0.00 30.20 4.26
8043 8416 1.827969 TGCTTTGAGTCTAGGGAGAGC 59.172 52.381 0.00 0.00 30.20 4.09
8044 8417 4.543590 TTTGCTTTGAGTCTAGGGAGAG 57.456 45.455 0.00 0.00 30.20 3.20
8045 8418 4.974645 TTTTGCTTTGAGTCTAGGGAGA 57.025 40.909 0.00 0.00 0.00 3.71
8064 8437 8.164070 AGTAGGGAGTTCAGTGATGTAATTTTT 58.836 33.333 0.00 0.00 0.00 1.94
8065 8438 7.690256 AGTAGGGAGTTCAGTGATGTAATTTT 58.310 34.615 0.00 0.00 0.00 1.82
8066 8439 7.259088 AGTAGGGAGTTCAGTGATGTAATTT 57.741 36.000 0.00 0.00 0.00 1.82
8067 8440 6.127026 GGAGTAGGGAGTTCAGTGATGTAATT 60.127 42.308 0.00 0.00 0.00 1.40
8068 8441 5.364157 GGAGTAGGGAGTTCAGTGATGTAAT 59.636 44.000 0.00 0.00 0.00 1.89
8069 8442 4.710375 GGAGTAGGGAGTTCAGTGATGTAA 59.290 45.833 0.00 0.00 0.00 2.41
8070 8443 4.017407 AGGAGTAGGGAGTTCAGTGATGTA 60.017 45.833 0.00 0.00 0.00 2.29
8071 8444 3.100671 GGAGTAGGGAGTTCAGTGATGT 58.899 50.000 0.00 0.00 0.00 3.06
8072 8445 3.370104 AGGAGTAGGGAGTTCAGTGATG 58.630 50.000 0.00 0.00 0.00 3.07
8073 8446 3.767309 AGGAGTAGGGAGTTCAGTGAT 57.233 47.619 0.00 0.00 0.00 3.06
8074 8447 4.537751 CATAGGAGTAGGGAGTTCAGTGA 58.462 47.826 0.00 0.00 0.00 3.41
8075 8448 3.068873 GCATAGGAGTAGGGAGTTCAGTG 59.931 52.174 0.00 0.00 0.00 3.66
8076 8449 3.052490 AGCATAGGAGTAGGGAGTTCAGT 60.052 47.826 0.00 0.00 0.00 3.41
8077 8450 3.571590 AGCATAGGAGTAGGGAGTTCAG 58.428 50.000 0.00 0.00 0.00 3.02
8078 8451 3.689872 AGCATAGGAGTAGGGAGTTCA 57.310 47.619 0.00 0.00 0.00 3.18
8079 8452 6.673839 ATTAAGCATAGGAGTAGGGAGTTC 57.326 41.667 0.00 0.00 0.00 3.01
8080 8453 7.453141 AAATTAAGCATAGGAGTAGGGAGTT 57.547 36.000 0.00 0.00 0.00 3.01
8081 8454 7.068686 GAAATTAAGCATAGGAGTAGGGAGT 57.931 40.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.