Multiple sequence alignment - TraesCS3B01G205700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G205700 chr3B 100.000 2402 0 0 1 2402 240409195 240406794 0.000000e+00 4436.0
1 TraesCS3B01G205700 chr3D 90.622 2442 98 49 1 2368 164401444 164399060 0.000000e+00 3120.0
2 TraesCS3B01G205700 chr3A 89.933 2404 110 46 1 2322 196421665 196419312 0.000000e+00 2977.0
3 TraesCS3B01G205700 chr3A 100.000 48 0 0 2321 2368 196417235 196417188 3.290000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G205700 chr3B 240406794 240409195 2401 True 4436.0 4436 100.0000 1 2402 1 chr3B.!!$R1 2401
1 TraesCS3B01G205700 chr3D 164399060 164401444 2384 True 3120.0 3120 90.6220 1 2368 1 chr3D.!!$R1 2367
2 TraesCS3B01G205700 chr3A 196417188 196421665 4477 True 1533.4 2977 94.9665 1 2368 2 chr3A.!!$R1 2367

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
900 970 0.183971 CAATATAACCCGCCACCCCA 59.816 55.0 0.0 0.0 0.0 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2374 4562 1.125633 TATAAGGTCGAGTTGGGGGC 58.874 55.0 0.0 0.0 0.0 5.8 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 7.415206 CCACATGGTTAATCAGTTAAGCTAACC 60.415 40.741 0.00 2.86 44.58 2.85
90 91 1.133790 GTTAAGCTAACCGCCTCTCGA 59.866 52.381 0.00 0.00 41.67 4.04
98 99 1.215382 CCGCCTCTCGATGTTGACA 59.785 57.895 0.00 0.00 41.67 3.58
120 121 3.616219 TGGAACACACACTGTTTAAGCT 58.384 40.909 0.00 0.00 43.60 3.74
121 122 4.771903 TGGAACACACACTGTTTAAGCTA 58.228 39.130 0.00 0.00 43.60 3.32
130 133 6.700520 ACACACTGTTTAAGCTAACTGTCTAC 59.299 38.462 8.47 0.00 37.88 2.59
168 172 8.945193 TGGCTAGATATAGGACCATTTAGTTTT 58.055 33.333 0.00 0.00 0.00 2.43
169 173 9.794719 GGCTAGATATAGGACCATTTAGTTTTT 57.205 33.333 0.00 0.00 0.00 1.94
190 194 6.944234 TTTTTGTTTTTATTTTGCGGGGAT 57.056 29.167 0.00 0.00 0.00 3.85
213 217 4.484912 AGGACCATTTAGTAGCTAGGAGG 58.515 47.826 0.00 0.00 0.00 4.30
241 245 2.809601 GCTGTCACGCAGGTACGG 60.810 66.667 0.00 0.00 45.14 4.02
278 310 1.020437 GTTGCTGAAGCTAGGCATCC 58.980 55.000 3.61 1.20 42.66 3.51
314 346 3.788672 GTCCATCTGACACCCCATC 57.211 57.895 0.00 0.00 43.85 3.51
405 450 3.303495 CACGAGTAAATACAGCCGAACAG 59.697 47.826 0.00 0.00 0.00 3.16
407 452 3.924686 CGAGTAAATACAGCCGAACAGTT 59.075 43.478 0.00 0.00 0.00 3.16
408 453 4.387862 CGAGTAAATACAGCCGAACAGTTT 59.612 41.667 0.00 0.00 0.00 2.66
471 516 0.386838 ACAGAAAAGCAGGTGCAAGC 59.613 50.000 4.48 0.00 45.16 4.01
526 571 3.660501 AGATGTAGCAACTTGTCGTGA 57.339 42.857 0.00 0.00 0.00 4.35
838 889 1.945447 CCATCTCTCCCTCCCTCCT 59.055 63.158 0.00 0.00 0.00 3.69
900 970 0.183971 CAATATAACCCGCCACCCCA 59.816 55.000 0.00 0.00 0.00 4.96
944 1015 3.039202 CTCCACAAATCGCCACGGC 62.039 63.158 0.00 0.00 37.85 5.68
945 1016 3.055719 CCACAAATCGCCACGGCT 61.056 61.111 6.48 0.00 39.32 5.52
968 1039 2.047179 GGTTCCTCCGTCCACAGC 60.047 66.667 0.00 0.00 0.00 4.40
969 1040 2.432628 GTTCCTCCGTCCACAGCG 60.433 66.667 0.00 0.00 0.00 5.18
970 1041 2.599281 TTCCTCCGTCCACAGCGA 60.599 61.111 0.00 0.00 0.00 4.93
971 1042 2.636412 TTCCTCCGTCCACAGCGAG 61.636 63.158 0.00 0.00 0.00 5.03
972 1043 4.803426 CCTCCGTCCACAGCGAGC 62.803 72.222 0.00 0.00 0.00 5.03
1403 1486 2.357836 CCAGTGCAGGGGCTGATT 59.642 61.111 3.73 0.00 41.91 2.57
1405 1488 1.302285 CAGTGCAGGGGCTGATTCT 59.698 57.895 0.00 0.00 41.91 2.40
1435 1518 4.657814 AACCCTGCTTCATTCCTTCTTA 57.342 40.909 0.00 0.00 0.00 2.10
1436 1519 3.956744 ACCCTGCTTCATTCCTTCTTAC 58.043 45.455 0.00 0.00 0.00 2.34
1437 1520 3.589288 ACCCTGCTTCATTCCTTCTTACT 59.411 43.478 0.00 0.00 0.00 2.24
1544 1635 3.562973 ACGATGCTTGATCAATCATCACC 59.437 43.478 34.35 19.48 41.56 4.02
1547 1638 1.605710 GCTTGATCAATCATCACCGGG 59.394 52.381 8.96 0.00 41.56 5.73
1548 1639 2.923121 CTTGATCAATCATCACCGGGT 58.077 47.619 8.96 0.00 41.56 5.28
1549 1640 2.330440 TGATCAATCATCACCGGGTG 57.670 50.000 21.27 21.27 36.51 4.61
1550 1641 1.134128 TGATCAATCATCACCGGGTGG 60.134 52.381 26.07 11.89 36.51 4.61
1551 1642 5.215112 TTGATCAATCATCACCGGGTGGT 62.215 47.826 26.07 17.95 41.56 4.16
1569 1665 1.464608 GGTGTGGTGTGATCAATCGTG 59.535 52.381 0.00 0.00 0.00 4.35
1612 1708 5.360714 AGGAGGCATGGTTAATTATTGTGTG 59.639 40.000 0.00 0.00 0.00 3.82
1651 1747 5.122711 GGGTGAAAGTAATTAAGCTTACGCA 59.877 40.000 5.45 0.00 36.83 5.24
1660 1762 5.679734 ATTAAGCTTACGCATTCATCTGG 57.320 39.130 5.45 0.00 39.10 3.86
1669 1771 2.675844 CGCATTCATCTGGTTTCGGTTA 59.324 45.455 0.00 0.00 0.00 2.85
1697 1799 7.093945 GCCCAATAAATTTGTAGAGTCCTTTGA 60.094 37.037 0.00 0.00 0.00 2.69
1736 1838 7.061441 TCGTCTCATATTAGTTGTCGTTCAAAC 59.939 37.037 0.00 0.00 37.81 2.93
1744 1846 4.374399 AGTTGTCGTTCAAACCGATACTT 58.626 39.130 0.00 0.00 37.81 2.24
1921 2025 6.400515 CGAGTTGAGCTGTCTTTTCTGAATAC 60.401 42.308 0.00 0.00 0.00 1.89
2014 2118 2.227865 GGAGTATTTGTTTTCTGCGCCA 59.772 45.455 4.18 0.00 0.00 5.69
2020 2124 0.174389 TGTTTTCTGCGCCAAAAGCA 59.826 45.000 13.12 13.70 44.04 3.91
2038 2142 1.792367 GCAATCGGCTTTTGTTTGGTC 59.208 47.619 0.00 0.00 40.25 4.02
2039 2143 2.545742 GCAATCGGCTTTTGTTTGGTCT 60.546 45.455 0.00 0.00 40.25 3.85
2040 2144 3.716601 CAATCGGCTTTTGTTTGGTCTT 58.283 40.909 0.00 0.00 0.00 3.01
2041 2145 4.794655 GCAATCGGCTTTTGTTTGGTCTTA 60.795 41.667 0.00 0.00 40.25 2.10
2059 2163 7.475299 TGGTCTTATTAAGGGGAAAATGACTT 58.525 34.615 3.66 0.00 0.00 3.01
2060 2164 7.396055 TGGTCTTATTAAGGGGAAAATGACTTG 59.604 37.037 3.66 0.00 0.00 3.16
2265 2375 3.920231 TCCATCTCCTTGTGGAATCTG 57.080 47.619 0.00 0.00 41.36 2.90
2267 2377 3.845992 TCCATCTCCTTGTGGAATCTGAA 59.154 43.478 0.00 0.00 41.36 3.02
2303 2413 2.338577 AGAAGTGCACAAGCTCAAGT 57.661 45.000 21.04 0.00 42.74 3.16
2368 4556 5.775701 TGGCTAAAGTTGTCTCTAAGACTCT 59.224 40.000 8.44 4.64 45.27 3.24
2369 4557 6.096695 GGCTAAAGTTGTCTCTAAGACTCTG 58.903 44.000 8.44 0.00 45.27 3.35
2370 4558 6.294843 GGCTAAAGTTGTCTCTAAGACTCTGT 60.295 42.308 8.44 5.20 45.27 3.41
2371 4559 6.584563 GCTAAAGTTGTCTCTAAGACTCTGTG 59.415 42.308 8.44 3.67 45.27 3.66
2372 4560 6.716934 AAAGTTGTCTCTAAGACTCTGTGA 57.283 37.500 8.44 0.00 45.27 3.58
2373 4561 5.699097 AGTTGTCTCTAAGACTCTGTGAC 57.301 43.478 8.44 0.00 45.27 3.67
2374 4562 4.214545 AGTTGTCTCTAAGACTCTGTGACG 59.785 45.833 8.44 0.00 45.27 4.35
2375 4563 2.484651 TGTCTCTAAGACTCTGTGACGC 59.515 50.000 8.44 0.00 45.27 5.19
2376 4564 2.085320 TCTCTAAGACTCTGTGACGCC 58.915 52.381 0.00 0.00 0.00 5.68
2377 4565 1.133407 CTCTAAGACTCTGTGACGCCC 59.867 57.143 0.00 0.00 0.00 6.13
2378 4566 0.173708 CTAAGACTCTGTGACGCCCC 59.826 60.000 0.00 0.00 0.00 5.80
2379 4567 1.255667 TAAGACTCTGTGACGCCCCC 61.256 60.000 0.00 0.00 0.00 5.40
2380 4568 3.311110 GACTCTGTGACGCCCCCA 61.311 66.667 0.00 0.00 0.00 4.96
2381 4569 2.847234 ACTCTGTGACGCCCCCAA 60.847 61.111 0.00 0.00 0.00 4.12
2382 4570 2.358737 CTCTGTGACGCCCCCAAC 60.359 66.667 0.00 0.00 0.00 3.77
2383 4571 2.847234 TCTGTGACGCCCCCAACT 60.847 61.111 0.00 0.00 0.00 3.16
2384 4572 2.358737 CTGTGACGCCCCCAACTC 60.359 66.667 0.00 0.00 0.00 3.01
2385 4573 4.308458 TGTGACGCCCCCAACTCG 62.308 66.667 0.00 0.00 0.00 4.18
2386 4574 3.998672 GTGACGCCCCCAACTCGA 61.999 66.667 0.00 0.00 0.00 4.04
2387 4575 3.998672 TGACGCCCCCAACTCGAC 61.999 66.667 0.00 0.00 0.00 4.20
2388 4576 4.754667 GACGCCCCCAACTCGACC 62.755 72.222 0.00 0.00 0.00 4.79
2390 4578 4.016706 CGCCCCCAACTCGACCTT 62.017 66.667 0.00 0.00 0.00 3.50
2391 4579 2.652095 CGCCCCCAACTCGACCTTA 61.652 63.158 0.00 0.00 0.00 2.69
2392 4580 1.912971 GCCCCCAACTCGACCTTAT 59.087 57.895 0.00 0.00 0.00 1.73
2393 4581 1.125633 GCCCCCAACTCGACCTTATA 58.874 55.000 0.00 0.00 0.00 0.98
2394 4582 1.202615 GCCCCCAACTCGACCTTATAC 60.203 57.143 0.00 0.00 0.00 1.47
2395 4583 2.395619 CCCCCAACTCGACCTTATACT 58.604 52.381 0.00 0.00 0.00 2.12
2396 4584 3.569491 CCCCCAACTCGACCTTATACTA 58.431 50.000 0.00 0.00 0.00 1.82
2397 4585 3.320256 CCCCCAACTCGACCTTATACTAC 59.680 52.174 0.00 0.00 0.00 2.73
2398 4586 4.213513 CCCCAACTCGACCTTATACTACT 58.786 47.826 0.00 0.00 0.00 2.57
2399 4587 4.277921 CCCCAACTCGACCTTATACTACTC 59.722 50.000 0.00 0.00 0.00 2.59
2400 4588 4.885907 CCCAACTCGACCTTATACTACTCA 59.114 45.833 0.00 0.00 0.00 3.41
2401 4589 5.535406 CCCAACTCGACCTTATACTACTCAT 59.465 44.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.681264 ACTTTAAGTGCACACCAAGGC 59.319 47.619 21.04 0.00 0.00 4.35
17 18 5.518847 GGTCCTTTTTCAACTTTAAGTGCAC 59.481 40.000 9.40 9.40 0.00 4.57
81 82 0.926155 CATGTCAACATCGAGAGGCG 59.074 55.000 0.00 0.00 42.69 5.52
90 91 3.316029 CAGTGTGTGTTCCATGTCAACAT 59.684 43.478 9.91 0.00 36.19 2.71
111 112 6.097915 AGCAGTAGACAGTTAGCTTAAACA 57.902 37.500 0.00 0.00 0.00 2.83
112 113 7.314393 ACTAGCAGTAGACAGTTAGCTTAAAC 58.686 38.462 0.00 0.00 33.83 2.01
113 114 7.393796 AGACTAGCAGTAGACAGTTAGCTTAAA 59.606 37.037 0.00 0.00 33.83 1.52
114 115 6.885376 AGACTAGCAGTAGACAGTTAGCTTAA 59.115 38.462 0.00 0.00 33.83 1.85
115 116 6.416415 AGACTAGCAGTAGACAGTTAGCTTA 58.584 40.000 0.00 0.00 33.83 3.09
116 117 5.258051 AGACTAGCAGTAGACAGTTAGCTT 58.742 41.667 0.00 0.00 33.83 3.74
117 118 4.850680 AGACTAGCAGTAGACAGTTAGCT 58.149 43.478 0.00 0.00 36.20 3.32
118 119 5.818857 ACTAGACTAGCAGTAGACAGTTAGC 59.181 44.000 9.52 0.00 0.00 3.09
119 120 6.259167 CCACTAGACTAGCAGTAGACAGTTAG 59.741 46.154 9.52 0.00 0.00 2.34
120 121 6.114089 CCACTAGACTAGCAGTAGACAGTTA 58.886 44.000 9.52 0.00 0.00 2.24
121 122 4.944930 CCACTAGACTAGCAGTAGACAGTT 59.055 45.833 9.52 0.00 0.00 3.16
130 133 6.765989 CCTATATCTAGCCACTAGACTAGCAG 59.234 46.154 9.52 2.44 44.47 4.24
168 172 6.651225 CCTATCCCCGCAAAATAAAAACAAAA 59.349 34.615 0.00 0.00 0.00 2.44
169 173 6.014499 TCCTATCCCCGCAAAATAAAAACAAA 60.014 34.615 0.00 0.00 0.00 2.83
170 174 5.480772 TCCTATCCCCGCAAAATAAAAACAA 59.519 36.000 0.00 0.00 0.00 2.83
171 175 5.017490 TCCTATCCCCGCAAAATAAAAACA 58.983 37.500 0.00 0.00 0.00 2.83
172 176 5.345702 GTCCTATCCCCGCAAAATAAAAAC 58.654 41.667 0.00 0.00 0.00 2.43
178 182 0.923358 TGGTCCTATCCCCGCAAAAT 59.077 50.000 0.00 0.00 0.00 1.82
190 194 5.374753 TCCTCCTAGCTACTAAATGGTCCTA 59.625 44.000 0.00 0.00 0.00 2.94
213 217 1.124477 GCGTGACAGCTTCGTTTAGTC 59.876 52.381 0.00 0.00 0.00 2.59
241 245 3.855950 GCAACACACTCTATGTACGTACC 59.144 47.826 22.43 5.80 40.64 3.34
257 261 1.399791 GATGCCTAGCTTCAGCAACAC 59.600 52.381 8.78 1.93 45.16 3.32
314 346 0.442310 CGTACAACTTGGGCACATCG 59.558 55.000 0.00 0.00 0.00 3.84
408 453 9.367444 GCTAGCTTACTTTCTTAGTGTCATTTA 57.633 33.333 7.70 0.00 37.73 1.40
471 516 3.418913 TGCGACACGGGCGATTTG 61.419 61.111 5.68 0.00 0.00 2.32
526 571 3.494573 CCATCTCTATGCTGCTCACATGT 60.495 47.826 0.00 0.00 0.00 3.21
569 614 1.892474 TGCCCGGGAGAAATTGAAAAG 59.108 47.619 29.31 0.00 0.00 2.27
576 621 2.677228 CAGGTGCCCGGGAGAAAT 59.323 61.111 29.31 1.40 0.00 2.17
577 622 3.646715 CCAGGTGCCCGGGAGAAA 61.647 66.667 29.31 2.38 41.43 2.52
838 889 6.517529 GCAGTAGGTGAGAAGAGAAAGAAAGA 60.518 42.308 0.00 0.00 0.00 2.52
900 970 4.250305 GTGTGTGAGGGGTGCGGT 62.250 66.667 0.00 0.00 0.00 5.68
922 993 2.334946 TGGCGATTTGTGGAGCTGC 61.335 57.895 0.00 0.00 0.00 5.25
944 1015 1.071699 TGGACGGAGGAACCAAGAAAG 59.928 52.381 0.00 0.00 38.90 2.62
945 1016 1.133363 TGGACGGAGGAACCAAGAAA 58.867 50.000 0.00 0.00 38.90 2.52
1024 1104 4.821589 GGCCAGGAGGAACGCGAG 62.822 72.222 15.93 0.00 36.89 5.03
1167 1250 1.218047 GTACTCCATGCACTCGCCA 59.782 57.895 0.00 0.00 37.32 5.69
1317 1400 0.179108 GGCAGTTGTAGTAGGAGGCG 60.179 60.000 0.00 0.00 0.00 5.52
1403 1486 5.241403 TGAAGCAGGGTTTAATGAAGAGA 57.759 39.130 0.00 0.00 0.00 3.10
1405 1488 5.418840 GGAATGAAGCAGGGTTTAATGAAGA 59.581 40.000 0.00 0.00 0.00 2.87
1435 1518 1.206878 TGATGAGGCATGCAGGTAGT 58.793 50.000 21.36 0.00 0.00 2.73
1436 1519 2.336945 TTGATGAGGCATGCAGGTAG 57.663 50.000 21.36 0.00 0.00 3.18
1437 1520 3.301794 AATTGATGAGGCATGCAGGTA 57.698 42.857 21.36 2.63 0.00 3.08
1544 1635 1.671054 GATCACACCACACCACCCG 60.671 63.158 0.00 0.00 0.00 5.28
1547 1638 1.464608 CGATTGATCACACCACACCAC 59.535 52.381 0.00 0.00 0.00 4.16
1548 1639 1.071542 ACGATTGATCACACCACACCA 59.928 47.619 0.00 0.00 0.00 4.17
1549 1640 1.464608 CACGATTGATCACACCACACC 59.535 52.381 0.00 0.00 0.00 4.16
1550 1641 1.135972 GCACGATTGATCACACCACAC 60.136 52.381 0.00 0.00 0.00 3.82
1551 1642 1.155889 GCACGATTGATCACACCACA 58.844 50.000 0.00 0.00 0.00 4.17
1552 1643 0.447801 GGCACGATTGATCACACCAC 59.552 55.000 0.00 0.00 0.00 4.16
1569 1665 0.452987 TCCACTGATACACGTACGGC 59.547 55.000 21.06 3.95 0.00 5.68
1578 1674 1.071385 CCATGCCTCCTCCACTGATAC 59.929 57.143 0.00 0.00 0.00 2.24
1579 1675 1.344393 ACCATGCCTCCTCCACTGATA 60.344 52.381 0.00 0.00 0.00 2.15
1584 1680 2.736670 ATTAACCATGCCTCCTCCAC 57.263 50.000 0.00 0.00 0.00 4.02
1612 1708 4.799564 TTCACCCAAATAGGCACAAATC 57.200 40.909 0.00 0.00 35.39 2.17
1651 1747 3.632145 GGCATAACCGAAACCAGATGAAT 59.368 43.478 0.00 0.00 0.00 2.57
1660 1762 6.592220 ACAAATTTATTGGGCATAACCGAAAC 59.408 34.615 0.00 0.00 39.87 2.78
1669 1771 6.435164 AGGACTCTACAAATTTATTGGGCAT 58.565 36.000 0.00 0.00 0.00 4.40
1697 1799 7.507733 AATATGAGACGAAGGAAGTACGTAT 57.492 36.000 0.00 0.00 40.29 3.06
1744 1846 4.216687 CACCATAGTTAAACCGAGGCAAAA 59.783 41.667 0.00 0.00 0.00 2.44
1921 2025 5.124617 GGAGCAGAAAGGAGAAAGGTAAATG 59.875 44.000 0.00 0.00 0.00 2.32
1991 2095 3.057526 GGCGCAGAAAACAAATACTCCTT 60.058 43.478 10.83 0.00 0.00 3.36
1992 2096 2.488153 GGCGCAGAAAACAAATACTCCT 59.512 45.455 10.83 0.00 0.00 3.69
1993 2097 2.227865 TGGCGCAGAAAACAAATACTCC 59.772 45.455 10.83 0.00 0.00 3.85
1994 2098 3.552604 TGGCGCAGAAAACAAATACTC 57.447 42.857 10.83 0.00 0.00 2.59
1995 2099 4.314740 TTTGGCGCAGAAAACAAATACT 57.685 36.364 10.83 0.00 0.00 2.12
2007 2111 1.802715 CCGATTGCTTTTGGCGCAG 60.803 57.895 10.83 0.00 45.43 5.18
2020 2124 5.722021 ATAAGACCAAACAAAAGCCGATT 57.278 34.783 0.00 0.00 0.00 3.34
2038 2142 9.462606 ACTACAAGTCATTTTCCCCTTAATAAG 57.537 33.333 0.00 0.00 0.00 1.73
2039 2143 9.238368 CACTACAAGTCATTTTCCCCTTAATAA 57.762 33.333 0.00 0.00 0.00 1.40
2040 2144 8.387813 ACACTACAAGTCATTTTCCCCTTAATA 58.612 33.333 0.00 0.00 0.00 0.98
2041 2145 7.238710 ACACTACAAGTCATTTTCCCCTTAAT 58.761 34.615 0.00 0.00 0.00 1.40
2059 2163 2.805671 CGATCTTTGCCACAACACTACA 59.194 45.455 0.00 0.00 0.00 2.74
2060 2164 2.159627 CCGATCTTTGCCACAACACTAC 59.840 50.000 0.00 0.00 0.00 2.73
2143 2253 6.249035 TGGTCCTAACAAATGAATCGTTTC 57.751 37.500 0.00 0.00 0.00 2.78
2265 2375 7.570324 GCACTTCTAGATATCCTTGCGAATTTC 60.570 40.741 0.00 0.00 0.00 2.17
2267 2377 5.698545 GCACTTCTAGATATCCTTGCGAATT 59.301 40.000 0.00 0.00 0.00 2.17
2368 4556 4.308458 CGAGTTGGGGGCGTCACA 62.308 66.667 0.00 0.00 0.00 3.58
2369 4557 3.998672 TCGAGTTGGGGGCGTCAC 61.999 66.667 0.00 0.00 0.00 3.67
2370 4558 3.998672 GTCGAGTTGGGGGCGTCA 61.999 66.667 0.00 0.00 0.00 4.35
2371 4559 4.754667 GGTCGAGTTGGGGGCGTC 62.755 72.222 0.00 0.00 0.00 5.19
2373 4561 1.968050 ATAAGGTCGAGTTGGGGGCG 61.968 60.000 0.00 0.00 0.00 6.13
2374 4562 1.125633 TATAAGGTCGAGTTGGGGGC 58.874 55.000 0.00 0.00 0.00 5.80
2375 4563 2.395619 AGTATAAGGTCGAGTTGGGGG 58.604 52.381 0.00 0.00 0.00 5.40
2376 4564 4.213513 AGTAGTATAAGGTCGAGTTGGGG 58.786 47.826 0.00 0.00 0.00 4.96
2377 4565 4.885907 TGAGTAGTATAAGGTCGAGTTGGG 59.114 45.833 0.00 0.00 0.00 4.12
2378 4566 6.636562 ATGAGTAGTATAAGGTCGAGTTGG 57.363 41.667 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.