Multiple sequence alignment - TraesCS3B01G205300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G205300 chr3B 100.000 7629 0 0 1 7629 239901450 239909078 0.000000e+00 14089.0
1 TraesCS3B01G205300 chr3B 85.054 368 35 12 1 355 34706355 34705995 2.620000e-94 357.0
2 TraesCS3B01G205300 chr3B 88.261 230 22 1 7186 7410 519396625 519396396 3.510000e-68 270.0
3 TraesCS3B01G205300 chr3B 86.598 194 14 6 7418 7599 620204170 620203977 3.610000e-48 204.0
4 TraesCS3B01G205300 chr3B 95.833 120 2 3 6171 6288 372486257 372486375 2.810000e-44 191.0
5 TraesCS3B01G205300 chr3B 94.958 119 4 2 6171 6288 591893169 591893286 1.310000e-42 185.0
6 TraesCS3B01G205300 chr3D 96.675 2316 59 8 3872 6175 163124783 163127092 0.000000e+00 3834.0
7 TraesCS3B01G205300 chr3D 93.536 1346 64 11 896 2230 163122322 163123655 0.000000e+00 1982.0
8 TraesCS3B01G205300 chr3D 98.094 1102 19 2 2220 3321 163123687 163124786 0.000000e+00 1917.0
9 TraesCS3B01G205300 chr3D 88.710 868 67 18 6309 7160 163127106 163127958 0.000000e+00 1031.0
10 TraesCS3B01G205300 chr3D 95.391 499 21 2 405 902 163121797 163122294 0.000000e+00 793.0
11 TraesCS3B01G205300 chr3D 85.080 563 58 14 1 552 465070459 465069912 1.120000e-152 551.0
12 TraesCS3B01G205300 chr3D 95.175 228 10 1 3647 3873 71246011 71245784 7.280000e-95 359.0
13 TraesCS3B01G205300 chr3D 88.362 232 21 3 7189 7415 298983785 298983555 2.710000e-69 274.0
14 TraesCS3B01G205300 chr3D 95.732 164 6 1 5450 5613 537154863 537154701 5.870000e-66 263.0
15 TraesCS3B01G205300 chr3D 95.092 163 7 1 5450 5612 612268449 612268610 9.820000e-64 255.0
16 TraesCS3B01G205300 chr3D 93.023 172 11 1 5448 5619 6667439 6667269 4.570000e-62 250.0
17 TraesCS3B01G205300 chr3D 93.421 76 5 0 3318 3393 284323602 284323677 6.260000e-21 113.0
18 TraesCS3B01G205300 chr3A 94.033 1391 60 9 3872 5249 195459202 195460582 0.000000e+00 2087.0
19 TraesCS3B01G205300 chr3A 93.539 1331 70 6 896 2222 195456757 195458075 0.000000e+00 1967.0
20 TraesCS3B01G205300 chr3A 93.358 1099 59 7 2220 3316 195458117 195459203 0.000000e+00 1613.0
21 TraesCS3B01G205300 chr3A 92.560 914 48 9 1 901 195455825 195456731 0.000000e+00 1293.0
22 TraesCS3B01G205300 chr3A 87.429 875 74 22 6283 7141 195461429 195462283 0.000000e+00 974.0
23 TraesCS3B01G205300 chr3A 93.096 478 30 1 5700 6174 195460954 195461431 0.000000e+00 697.0
24 TraesCS3B01G205300 chr3A 88.106 227 22 2 7189 7410 453818693 453818467 1.630000e-66 265.0
25 TraesCS3B01G205300 chr3A 84.177 158 18 2 398 555 743832790 743832940 6.170000e-31 147.0
26 TraesCS3B01G205300 chr1A 90.432 533 32 9 3360 3875 309615762 309615232 0.000000e+00 684.0
27 TraesCS3B01G205300 chr1A 83.190 232 33 4 7185 7410 202085169 202084938 2.790000e-49 207.0
28 TraesCS3B01G205300 chr1A 91.603 131 4 7 6169 6298 518077312 518077188 2.830000e-39 174.0
29 TraesCS3B01G205300 chr1A 85.616 146 15 4 3318 3460 283488514 283488656 1.720000e-31 148.0
30 TraesCS3B01G205300 chr6A 90.226 532 35 7 3360 3875 444277348 444277878 0.000000e+00 678.0
31 TraesCS3B01G205300 chr6A 90.171 234 9 3 7410 7629 600887501 600887734 7.490000e-75 292.0
32 TraesCS3B01G205300 chr6A 85.903 227 26 2 7189 7410 30374511 30374286 3.560000e-58 237.0
33 TraesCS3B01G205300 chr6A 98.182 110 0 2 6172 6280 587781958 587782066 2.810000e-44 191.0
34 TraesCS3B01G205300 chr6A 96.460 113 4 0 6168 6280 422165694 422165582 3.630000e-43 187.0
35 TraesCS3B01G205300 chr6A 96.460 113 2 2 6169 6280 535140104 535140215 1.310000e-42 185.0
36 TraesCS3B01G205300 chr6A 97.248 109 1 2 6174 6281 158088023 158087916 4.700000e-42 183.0
37 TraesCS3B01G205300 chr6A 94.118 119 3 4 6171 6288 272347672 272347787 2.190000e-40 178.0
38 TraesCS3B01G205300 chr2A 86.934 574 54 14 3318 3873 248462428 248462998 6.500000e-175 625.0
39 TraesCS3B01G205300 chr2A 80.450 578 73 24 3318 3873 571890041 571890600 9.220000e-109 405.0
40 TraesCS3B01G205300 chr2A 94.783 230 11 1 3644 3872 405010952 405011181 2.620000e-94 357.0
41 TraesCS3B01G205300 chr2A 94.554 202 9 2 3321 3521 356230943 356230743 2.070000e-80 311.0
42 TraesCS3B01G205300 chr2A 94.554 202 9 2 3321 3521 356267433 356267233 2.070000e-80 311.0
43 TraesCS3B01G205300 chr2A 95.181 166 8 0 7464 7629 617721300 617721465 5.870000e-66 263.0
44 TraesCS3B01G205300 chr2A 96.491 114 4 0 6167 6280 14026127 14026014 1.010000e-43 189.0
45 TraesCS3B01G205300 chr2A 83.537 164 20 1 398 561 479845802 479845646 6.170000e-31 147.0
46 TraesCS3B01G205300 chr2A 100.000 44 0 0 7419 7462 617721236 617721279 1.760000e-11 82.4
47 TraesCS3B01G205300 chr1B 88.863 431 30 10 3315 3728 408725730 408726159 1.470000e-141 514.0
48 TraesCS3B01G205300 chr1B 84.934 458 53 6 97 551 40394900 40394456 4.200000e-122 449.0
49 TraesCS3B01G205300 chr1B 94.012 167 8 2 5450 5616 623195683 623195847 1.270000e-62 252.0
50 TraesCS3B01G205300 chr1B 96.552 116 2 2 6166 6280 604145100 604145214 2.810000e-44 191.0
51 TraesCS3B01G205300 chr1B 80.220 182 29 7 7451 7628 139363220 139363398 6.210000e-26 130.0
52 TraesCS3B01G205300 chr2B 83.688 564 63 17 1 552 276493357 276493903 8.830000e-139 505.0
53 TraesCS3B01G205300 chr2B 97.426 272 6 1 3373 3643 36444093 36443822 5.390000e-126 462.0
54 TraesCS3B01G205300 chr2B 97.388 268 7 0 3376 3643 396285102 396285369 2.510000e-124 457.0
55 TraesCS3B01G205300 chr2B 97.388 268 7 0 3376 3643 511849665 511849932 2.510000e-124 457.0
56 TraesCS3B01G205300 chr7B 83.156 564 66 17 1 552 519229582 519230128 8.900000e-134 488.0
57 TraesCS3B01G205300 chr7B 97.026 269 8 0 3375 3643 616541038 616541306 3.250000e-123 453.0
58 TraesCS3B01G205300 chr7B 93.004 243 15 2 3644 3884 208318798 208318556 3.390000e-93 353.0
59 TraesCS3B01G205300 chr7B 98.198 111 0 2 6171 6280 22065646 22065537 7.810000e-45 193.0
60 TraesCS3B01G205300 chr7B 98.182 110 0 2 6173 6281 137792733 137792625 2.810000e-44 191.0
61 TraesCS3B01G205300 chr7B 98.165 109 2 0 6173 6281 732134689 732134581 2.810000e-44 191.0
62 TraesCS3B01G205300 chr7B 95.726 117 3 2 6165 6280 423767208 423767093 3.630000e-43 187.0
63 TraesCS3B01G205300 chr7B 93.966 116 5 2 6167 6281 538721947 538722061 2.830000e-39 174.0
64 TraesCS3B01G205300 chr5B 96.679 271 9 0 3373 3643 570000539 570000809 1.170000e-122 451.0
65 TraesCS3B01G205300 chr5B 93.529 170 9 2 5447 5615 490757577 490757409 1.270000e-62 252.0
66 TraesCS3B01G205300 chr5B 84.279 229 27 5 7189 7410 691521134 691520908 1.670000e-51 215.0
67 TraesCS3B01G205300 chr5B 94.355 124 5 2 6169 6291 425294750 425294872 1.010000e-43 189.0
68 TraesCS3B01G205300 chr5B 96.522 115 1 3 6169 6281 559999863 559999750 3.630000e-43 187.0
69 TraesCS3B01G205300 chr5B 84.810 158 17 1 398 555 248666183 248666333 1.330000e-32 152.0
70 TraesCS3B01G205300 chr5A 80.589 577 72 24 3318 3873 324728246 324727689 7.130000e-110 409.0
71 TraesCS3B01G205300 chr5A 86.344 227 24 4 7189 7410 141031218 141030994 2.750000e-59 241.0
72 TraesCS3B01G205300 chr1D 95.259 232 10 1 3644 3874 394850384 394850153 4.350000e-97 366.0
73 TraesCS3B01G205300 chr1D 95.175 228 10 1 3647 3873 214094441 214094668 7.280000e-95 359.0
74 TraesCS3B01G205300 chr1D 95.783 166 6 1 5450 5615 463381905 463382069 4.540000e-67 267.0
75 TraesCS3B01G205300 chr1D 95.706 163 6 1 5450 5612 338937373 338937212 2.110000e-65 261.0
76 TraesCS3B01G205300 chr1D 94.479 163 8 1 5450 5612 230842692 230842853 4.570000e-62 250.0
77 TraesCS3B01G205300 chr1D 97.222 108 3 0 6174 6281 45399302 45399195 4.700000e-42 183.0
78 TraesCS3B01G205300 chr1D 94.872 117 3 3 6169 6284 48024733 48024619 6.080000e-41 180.0
79 TraesCS3B01G205300 chr1D 86.792 106 14 0 7189 7294 491707955 491708060 1.340000e-22 119.0
80 TraesCS3B01G205300 chr7D 94.397 232 13 0 3644 3875 586357047 586357278 2.620000e-94 357.0
81 TraesCS3B01G205300 chr7D 94.760 229 11 1 3646 3873 336279354 336279582 9.420000e-94 355.0
82 TraesCS3B01G205300 chr7D 94.372 231 12 1 3644 3873 203669274 203669504 3.390000e-93 353.0
83 TraesCS3B01G205300 chr7D 93.452 168 10 1 5449 5616 296507682 296507848 1.640000e-61 248.0
84 TraesCS3B01G205300 chr7D 92.941 170 11 1 5450 5619 14440301 14440469 5.910000e-61 246.0
85 TraesCS3B01G205300 chr7D 86.344 227 26 1 7189 7410 110658234 110658460 7.650000e-60 243.0
86 TraesCS3B01G205300 chr7D 93.443 122 6 2 6173 6292 545096023 545095902 6.080000e-41 180.0
87 TraesCS3B01G205300 chr7D 87.500 80 10 0 7185 7264 605742211 605742132 8.150000e-15 93.5
88 TraesCS3B01G205300 chr5D 94.737 228 11 1 3647 3873 61612533 61612306 3.390000e-93 353.0
89 TraesCS3B01G205300 chr5D 89.823 226 18 1 7190 7410 531416939 531417164 1.250000e-72 285.0
90 TraesCS3B01G205300 chr5D 88.053 226 23 1 7189 7410 440637835 440637610 1.630000e-66 265.0
91 TraesCS3B01G205300 chr5D 95.152 165 7 1 5448 5612 53583240 53583077 7.590000e-65 259.0
92 TraesCS3B01G205300 chr5D 93.293 164 10 1 5449 5612 399146794 399146632 2.750000e-59 241.0
93 TraesCS3B01G205300 chr5D 92.727 165 11 1 5450 5614 230416831 230416994 3.560000e-58 237.0
94 TraesCS3B01G205300 chr5D 95.536 112 5 0 6170 6281 57849813 57849924 6.080000e-41 180.0
95 TraesCS3B01G205300 chr4D 84.511 368 35 15 1 356 20249854 20250211 2.040000e-90 344.0
96 TraesCS3B01G205300 chr4D 93.714 175 9 2 5450 5624 23312218 23312046 2.110000e-65 261.0
97 TraesCS3B01G205300 chr4D 93.902 164 9 1 5449 5612 3590473 3590635 5.910000e-61 246.0
98 TraesCS3B01G205300 chr4D 92.529 174 10 2 5441 5612 12520129 12520301 5.910000e-61 246.0
99 TraesCS3B01G205300 chr4D 92.442 172 12 1 5450 5621 23422437 23422607 2.130000e-60 244.0
100 TraesCS3B01G205300 chr4D 94.118 119 4 3 6165 6281 113330393 113330276 2.190000e-40 178.0
101 TraesCS3B01G205300 chr4D 94.118 119 3 3 6163 6280 131123719 131123834 2.190000e-40 178.0
102 TraesCS3B01G205300 chr4D 81.385 231 26 11 7186 7410 405470868 405471087 1.020000e-38 172.0
103 TraesCS3B01G205300 chr4D 100.000 30 0 0 7189 7218 340294263 340294292 1.000000e-03 56.5
104 TraesCS3B01G205300 chr4A 92.411 224 5 4 7418 7629 682001367 682001590 7.430000e-80 309.0
105 TraesCS3B01G205300 chr4A 88.106 227 22 1 7189 7410 669038650 669038876 1.630000e-66 265.0
106 TraesCS3B01G205300 chr4A 87.892 223 25 2 7189 7410 601216063 601216284 2.110000e-65 261.0
107 TraesCS3B01G205300 chr4A 95.092 163 7 1 5450 5612 517406471 517406632 9.820000e-64 255.0
108 TraesCS3B01G205300 chr4A 94.012 167 9 1 5450 5616 676876862 676877027 1.270000e-62 252.0
109 TraesCS3B01G205300 chr4A 95.690 116 3 2 6173 6287 610483384 610483270 1.310000e-42 185.0
110 TraesCS3B01G205300 chr6B 89.565 230 19 1 7186 7410 140766387 140766616 3.480000e-73 287.0
111 TraesCS3B01G205300 chr6B 94.675 169 8 1 5448 5616 314546985 314547152 2.110000e-65 261.0
112 TraesCS3B01G205300 chr6B 93.452 168 9 2 5450 5616 119526809 119526975 1.640000e-61 248.0
113 TraesCS3B01G205300 chr6B 92.982 171 10 2 5444 5613 652640716 652640547 1.640000e-61 248.0
114 TraesCS3B01G205300 chr6B 98.148 108 2 0 6173 6280 130967931 130967824 1.010000e-43 189.0
115 TraesCS3B01G205300 chr6B 98.148 108 2 0 6173 6280 567853368 567853475 1.010000e-43 189.0
116 TraesCS3B01G205300 chr6B 95.726 117 3 2 6165 6280 120355512 120355397 3.630000e-43 187.0
117 TraesCS3B01G205300 chr6B 97.273 110 3 0 6172 6281 641046971 641047080 3.630000e-43 187.0
118 TraesCS3B01G205300 chr2D 89.565 230 19 1 7186 7410 93125155 93125384 3.480000e-73 287.0
119 TraesCS3B01G205300 chr2D 96.319 163 5 1 5450 5612 362930808 362930969 4.540000e-67 267.0
120 TraesCS3B01G205300 chr2D 95.238 168 7 1 5448 5615 520539241 520539407 1.630000e-66 265.0
121 TraesCS3B01G205300 chr2D 86.695 233 26 1 7183 7410 432014261 432014029 3.530000e-63 254.0
122 TraesCS3B01G205300 chr2D 86.607 224 17 6 7418 7629 333513275 333513497 1.280000e-57 235.0
123 TraesCS3B01G205300 chr4B 89.189 222 17 4 7184 7400 500863973 500863754 3.510000e-68 270.0
124 TraesCS3B01G205300 chr4B 95.706 163 6 1 5450 5612 135218049 135218210 2.110000e-65 261.0
125 TraesCS3B01G205300 chr4B 88.942 208 18 1 7186 7388 670858568 670858775 1.270000e-62 252.0
126 TraesCS3B01G205300 chr4B 86.087 230 24 3 7186 7410 465008065 465008291 2.750000e-59 241.0
127 TraesCS3B01G205300 chr4B 78.894 199 25 13 7444 7629 443597692 443597498 1.340000e-22 119.0
128 TraesCS3B01G205300 chr6D 93.939 165 8 2 5449 5613 21051970 21052132 1.640000e-61 248.0
129 TraesCS3B01G205300 chr6D 93.902 164 9 1 5449 5612 426106892 426106730 5.910000e-61 246.0
130 TraesCS3B01G205300 chr6D 93.252 163 10 1 5450 5612 454984379 454984540 9.890000e-59 239.0
131 TraesCS3B01G205300 chr6D 93.210 162 10 1 5454 5615 15516931 15517091 3.560000e-58 237.0
132 TraesCS3B01G205300 chr6D 92.727 165 10 2 5450 5614 431160668 431160830 3.560000e-58 237.0
133 TraesCS3B01G205300 chr6D 92.638 163 11 1 5450 5612 82375882 82376043 4.600000e-57 233.0
134 TraesCS3B01G205300 chr6D 91.716 169 12 2 5448 5615 467084182 467084015 4.600000e-57 233.0
135 TraesCS3B01G205300 chr6D 94.355 124 3 4 6173 6295 130300956 130301076 3.630000e-43 187.0
136 TraesCS3B01G205300 chr6D 97.222 108 3 0 6173 6280 14121689 14121582 4.700000e-42 183.0
137 TraesCS3B01G205300 chr6D 96.364 110 4 0 6171 6280 3196379 3196488 1.690000e-41 182.0
138 TraesCS3B01G205300 chr6D 96.364 110 4 0 6171 6280 32929142 32929251 1.690000e-41 182.0
139 TraesCS3B01G205300 chr6D 94.783 115 4 2 6167 6280 350272414 350272301 2.190000e-40 178.0
140 TraesCS3B01G205300 chr6D 100.000 30 0 0 7189 7218 160464232 160464203 1.000000e-03 56.5
141 TraesCS3B01G205300 chrUn 93.413 167 10 1 5450 5616 141680907 141680742 5.910000e-61 246.0
142 TraesCS3B01G205300 chrUn 93.252 163 9 2 5450 5612 34210914 34210754 9.890000e-59 239.0
143 TraesCS3B01G205300 chrUn 92.638 163 11 1 5450 5612 41734215 41734376 4.600000e-57 233.0
144 TraesCS3B01G205300 chrUn 91.463 164 12 2 5450 5612 237024425 237024263 2.770000e-54 224.0
145 TraesCS3B01G205300 chrUn 91.463 164 12 2 5450 5612 347778167 347778329 2.770000e-54 224.0
146 TraesCS3B01G205300 chrUn 91.463 164 12 2 5450 5612 419948623 419948785 2.770000e-54 224.0
147 TraesCS3B01G205300 chrUn 91.411 163 13 1 5450 5612 88350299 88350138 9.960000e-54 222.0
148 TraesCS3B01G205300 chrUn 90.303 165 15 1 5450 5614 51488976 51489139 1.670000e-51 215.0
149 TraesCS3B01G205300 chrUn 90.361 166 13 2 5450 5615 96478384 96478222 1.670000e-51 215.0
150 TraesCS3B01G205300 chrUn 97.248 109 1 2 6174 6281 37054870 37054977 4.700000e-42 183.0
151 TraesCS3B01G205300 chrUn 97.222 108 1 2 6174 6280 77508706 77508812 1.690000e-41 182.0
152 TraesCS3B01G205300 chrUn 96.396 111 2 2 6171 6280 260324625 260324734 1.690000e-41 182.0
153 TraesCS3B01G205300 chrUn 97.196 107 3 0 6174 6280 267451510 267451404 1.690000e-41 182.0
154 TraesCS3B01G205300 chrUn 97.196 107 3 0 6174 6280 340254878 340254772 1.690000e-41 182.0
155 TraesCS3B01G205300 chrUn 96.262 107 4 0 6174 6280 15981933 15981827 7.870000e-40 176.0
156 TraesCS3B01G205300 chrUn 95.495 111 3 2 6171 6280 301837031 301836922 7.870000e-40 176.0
157 TraesCS3B01G205300 chrUn 95.455 110 3 2 6172 6280 1978788 1978680 2.830000e-39 174.0
158 TraesCS3B01G205300 chrUn 95.455 110 3 2 6172 6280 150796059 150795951 2.830000e-39 174.0
159 TraesCS3B01G205300 chrUn 93.162 117 6 2 6165 6280 82594835 82594720 3.660000e-38 171.0
160 TraesCS3B01G205300 chrUn 79.111 225 33 10 7418 7629 442212368 442212145 7.980000e-30 143.0
161 TraesCS3B01G205300 chr7A 91.729 133 5 6 6171 6299 645026056 645026186 6.080000e-41 180.0
162 TraesCS3B01G205300 chr7A 80.342 234 25 15 3318 3546 117397058 117397275 2.850000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G205300 chr3B 239901450 239909078 7628 False 14089.0 14089 100.000000 1 7629 1 chr3B.!!$F1 7628
1 TraesCS3B01G205300 chr3D 163121797 163127958 6161 False 1911.4 3834 94.481200 405 7160 5 chr3D.!!$F3 6755
2 TraesCS3B01G205300 chr3D 465069912 465070459 547 True 551.0 551 85.080000 1 552 1 chr3D.!!$R4 551
3 TraesCS3B01G205300 chr3A 195455825 195462283 6458 False 1438.5 2087 92.335833 1 7141 6 chr3A.!!$F2 7140
4 TraesCS3B01G205300 chr1A 309615232 309615762 530 True 684.0 684 90.432000 3360 3875 1 chr1A.!!$R2 515
5 TraesCS3B01G205300 chr6A 444277348 444277878 530 False 678.0 678 90.226000 3360 3875 1 chr6A.!!$F2 515
6 TraesCS3B01G205300 chr2A 248462428 248462998 570 False 625.0 625 86.934000 3318 3873 1 chr2A.!!$F1 555
7 TraesCS3B01G205300 chr2A 571890041 571890600 559 False 405.0 405 80.450000 3318 3873 1 chr2A.!!$F3 555
8 TraesCS3B01G205300 chr2B 276493357 276493903 546 False 505.0 505 83.688000 1 552 1 chr2B.!!$F1 551
9 TraesCS3B01G205300 chr7B 519229582 519230128 546 False 488.0 488 83.156000 1 552 1 chr7B.!!$F1 551
10 TraesCS3B01G205300 chr5A 324727689 324728246 557 True 409.0 409 80.589000 3318 3873 1 chr5A.!!$R2 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
555 575 1.837439 AGCCAGTTATCGAACCCATCA 59.163 47.619 0.00 0.0 36.08 3.07 F
1295 1366 0.039180 TCGGCTCTCTACTGGTTGGA 59.961 55.000 0.00 0.0 0.00 3.53 F
1400 1473 0.318441 TCAAGAACCTGCCGACTGAG 59.682 55.000 0.00 0.0 0.00 3.35 F
2561 2681 0.881118 TCCTGTCTTGCGAATTTGGC 59.119 50.000 0.00 0.0 0.00 4.52 F
3336 3457 0.106819 TACTCCCTCCGTCTAGGTGC 60.107 60.000 0.00 0.0 41.99 5.01 F
3718 3856 0.250945 TGTGGGCCGTGCATTCTTTA 60.251 50.000 0.00 0.0 0.00 1.85 F
5062 5220 2.908688 TGAGCGTGTGCCATATATGT 57.091 45.000 11.73 0.0 44.31 2.29 F
6135 6400 0.036388 ATTGTCCAGCCTGGTACGTG 60.036 55.000 11.27 0.0 39.03 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1946 2021 0.394938 AGCCATGTTGTACGGTGACA 59.605 50.000 0.00 0.00 0.00 3.58 R
2526 2646 0.916358 AGGAATGCAGGCTGTAGGGT 60.916 55.000 17.16 0.88 0.00 4.34 R
2626 2746 3.076621 CCTGTAAACAAGCATCTGAGCA 58.923 45.455 0.00 0.00 36.85 4.26 R
3805 3944 1.074951 CAAGGCGGAGGGGAAAACT 59.925 57.895 0.00 0.00 0.00 2.66 R
4966 5115 4.470462 GAATCTGAGTTGCATTGACACAC 58.530 43.478 0.00 0.00 0.00 3.82 R
5601 5863 4.202461 GGACAATGCAATATACTCCCTCCA 60.202 45.833 0.00 0.00 0.00 3.86 R
6263 6528 0.256752 TCATACTCCCTCCGTTCGGA 59.743 55.000 13.34 13.34 0.00 4.55 R
7376 7660 0.026285 CAACCGCTTCCGCTAATTCG 59.974 55.000 0.00 0.00 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 5.188555 TCAGTGAGAGGAAGCTTAATCACAT 59.811 40.000 23.61 12.85 39.54 3.21
59 60 7.120432 AGAGGAAGCTTAATCACATTGTCTTTC 59.880 37.037 0.00 0.00 0.00 2.62
96 107 5.342433 CAGACATGTCAACTTCAGCAAAAA 58.658 37.500 27.02 0.00 0.00 1.94
150 161 6.874288 ATTCAGCCAAATTATCTAGAGTGC 57.126 37.500 0.00 0.00 0.00 4.40
217 228 2.270352 AACAGAGCGATTTGTCCCAA 57.730 45.000 0.00 0.00 0.00 4.12
298 309 1.912043 AGGATTGTCCCTGAGTGAAGG 59.088 52.381 0.00 0.00 37.19 3.46
348 360 5.700402 AGGCTCCAATAAACATCAGTACT 57.300 39.130 0.00 0.00 0.00 2.73
355 367 8.662781 TCCAATAAACATCAGTACTGAATAGC 57.337 34.615 28.43 0.00 43.58 2.97
370 382 5.011090 TGAATAGCGCTCTACACATTTCT 57.989 39.130 16.34 0.00 0.00 2.52
380 392 5.390991 GCTCTACACATTTCTGTTTACCAGC 60.391 44.000 0.00 0.00 41.25 4.85
388 400 3.483808 TCTGTTTACCAGCACACATGA 57.516 42.857 0.00 0.00 41.25 3.07
555 575 1.837439 AGCCAGTTATCGAACCCATCA 59.163 47.619 0.00 0.00 36.08 3.07
573 593 5.996513 CCCATCAGGTGAAGATATCTTTCAG 59.003 44.000 18.88 9.20 36.11 3.02
889 920 2.648059 GACTAGACTAGTAACGGCCCA 58.352 52.381 15.18 0.00 39.59 5.36
967 1033 2.616765 GGACAAGAAAGGAGAAGGGAGC 60.617 54.545 0.00 0.00 0.00 4.70
1080 1151 2.594321 CTGAGTCTCAAGTCGCTGAAG 58.406 52.381 3.67 0.00 0.00 3.02
1190 1261 2.449450 CCCCCTAAACCCTAGCCCG 61.449 68.421 0.00 0.00 0.00 6.13
1192 1263 2.509422 CCTAAACCCTAGCCCGCC 59.491 66.667 0.00 0.00 0.00 6.13
1195 1266 2.942648 CTAAACCCTAGCCCGCCTGC 62.943 65.000 0.00 0.00 0.00 4.85
1231 1302 0.310543 CGCTTGCTCTCTATCTCGCT 59.689 55.000 0.00 0.00 0.00 4.93
1293 1364 1.133407 GTCTCGGCTCTCTACTGGTTG 59.867 57.143 0.00 0.00 0.00 3.77
1295 1366 0.039180 TCGGCTCTCTACTGGTTGGA 59.961 55.000 0.00 0.00 0.00 3.53
1318 1391 4.487714 TCCTACCTTTGTCTGCATAAGG 57.512 45.455 12.76 12.76 43.25 2.69
1377 1450 0.390735 GGTGAATGCGGAGTACGGTT 60.391 55.000 0.00 0.00 44.51 4.44
1397 1470 1.371558 GGTCAAGAACCTGCCGACT 59.628 57.895 0.00 0.00 45.45 4.18
1400 1473 0.318441 TCAAGAACCTGCCGACTGAG 59.682 55.000 0.00 0.00 0.00 3.35
1462 1535 3.661745 CGTTGGCGCTTCTAGGTAT 57.338 52.632 7.64 0.00 0.00 2.73
1463 1536 1.209128 CGTTGGCGCTTCTAGGTATG 58.791 55.000 7.64 0.00 0.00 2.39
1464 1537 1.470979 CGTTGGCGCTTCTAGGTATGT 60.471 52.381 7.64 0.00 0.00 2.29
1465 1538 1.933853 GTTGGCGCTTCTAGGTATGTG 59.066 52.381 7.64 0.00 0.00 3.21
1466 1539 1.191535 TGGCGCTTCTAGGTATGTGT 58.808 50.000 7.64 0.00 0.00 3.72
1467 1540 1.553248 TGGCGCTTCTAGGTATGTGTT 59.447 47.619 7.64 0.00 0.00 3.32
1468 1541 2.027561 TGGCGCTTCTAGGTATGTGTTT 60.028 45.455 7.64 0.00 0.00 2.83
1469 1542 3.007635 GGCGCTTCTAGGTATGTGTTTT 58.992 45.455 7.64 0.00 0.00 2.43
1470 1543 3.439129 GGCGCTTCTAGGTATGTGTTTTT 59.561 43.478 7.64 0.00 0.00 1.94
1496 1569 3.834489 TTGCTGCCCTTTTTGAATGAA 57.166 38.095 0.00 0.00 0.00 2.57
1504 1577 3.066380 CCTTTTTGAATGAAAAGCCCCG 58.934 45.455 4.93 0.00 42.50 5.73
1505 1578 3.494223 CCTTTTTGAATGAAAAGCCCCGT 60.494 43.478 4.93 0.00 42.50 5.28
1545 1618 9.719355 TGAACAACAGAAATTCACTAGCTATAA 57.281 29.630 0.00 0.00 0.00 0.98
1551 1624 8.540388 ACAGAAATTCACTAGCTATAACAGGAA 58.460 33.333 0.00 0.00 0.00 3.36
1557 1630 8.420374 TTCACTAGCTATAACAGGAATTTTCG 57.580 34.615 0.00 0.00 0.00 3.46
1573 1646 4.914312 TTTTCGTGCTCGTTAGTAATGG 57.086 40.909 8.17 0.00 38.33 3.16
1582 1655 1.604693 CGTTAGTAATGGCCGCTAGGG 60.605 57.143 0.00 0.00 38.20 3.53
1592 1665 1.613520 GGCCGCTAGGGAAAAGAAACT 60.614 52.381 8.65 0.00 38.47 2.66
1669 1742 8.946085 TGTAGATTGTTTACAGGATGCTAAAAG 58.054 33.333 0.00 0.00 42.53 2.27
1739 1812 4.747931 GCACTAGTAATGCCATCATCCCTT 60.748 45.833 0.00 0.00 37.08 3.95
1813 1886 7.968405 GTCTGTTGTTAATATGTTGATGTTCCC 59.032 37.037 0.00 0.00 0.00 3.97
1846 1920 7.041098 TGCTACTGAAGTTCCTCTTTGATTTTC 60.041 37.037 0.00 0.00 36.40 2.29
1847 1921 6.305693 ACTGAAGTTCCTCTTTGATTTTCG 57.694 37.500 0.00 0.00 36.40 3.46
1894 1969 7.532884 GGCAAAAATACAACCGTATTATCGATC 59.467 37.037 0.00 0.00 45.60 3.69
1946 2021 3.950395 GCATTTCCTTCTATGGCTGTCTT 59.050 43.478 0.00 0.00 0.00 3.01
1951 2026 3.055819 TCCTTCTATGGCTGTCTTGTCAC 60.056 47.826 0.00 0.00 0.00 3.67
2017 2092 5.914635 GTGTGTCAACTGTGGAATAATTGTG 59.085 40.000 0.00 0.00 0.00 3.33
2039 2114 1.073763 TGTGCAGTTCCTGGCTGTTAT 59.926 47.619 0.00 0.00 36.42 1.89
2053 2128 6.311200 CCTGGCTGTTATTTTAAATTGCTCAC 59.689 38.462 0.00 0.00 0.00 3.51
2160 2235 4.262506 CCCTGGAAGAACTATCGGGTAATC 60.263 50.000 0.00 0.00 34.07 1.75
2161 2236 4.262506 CCTGGAAGAACTATCGGGTAATCC 60.263 50.000 0.00 0.00 34.07 3.01
2526 2646 7.394016 TCTGCTGATAGAACAATAAAGGTGAA 58.606 34.615 0.00 0.00 0.00 3.18
2552 2672 0.964358 AGCCTGCATTCCTGTCTTGC 60.964 55.000 0.00 0.00 36.91 4.01
2561 2681 0.881118 TCCTGTCTTGCGAATTTGGC 59.119 50.000 0.00 0.00 0.00 4.52
2584 2704 7.176515 TGGCAACTAAGTTGAATTCATGTATGT 59.823 33.333 9.40 3.78 45.28 2.29
2626 2746 5.534654 ACAACATGTATTGGCACTGTTAGTT 59.465 36.000 0.00 0.00 33.63 2.24
2790 2910 7.275888 TGAGAAACAGAAAATAGTGCATGTT 57.724 32.000 0.00 0.00 32.55 2.71
2996 3117 9.088512 CATACTACTTTCCTGTGTAGTTCATTC 57.911 37.037 10.41 0.00 44.61 2.67
3013 3134 8.577048 AGTTCATTCATTGATCTTCTGACAAT 57.423 30.769 0.00 0.00 31.64 2.71
3336 3457 0.106819 TACTCCCTCCGTCTAGGTGC 60.107 60.000 0.00 0.00 41.99 5.01
3402 3523 1.774856 AGCCACAGTGGGAGTAACTTT 59.225 47.619 21.77 0.00 38.19 2.66
3427 3548 4.748892 CAGTAACATCGAGTCCAACTCAT 58.251 43.478 7.78 0.00 45.30 2.90
3473 3594 7.640313 TGAGTTAATGAGGAGAGAGGTAGTTA 58.360 38.462 0.00 0.00 0.00 2.24
3557 3678 8.362639 CCTAATAAATGGAGCTTTGCATGTTAT 58.637 33.333 0.00 0.00 0.00 1.89
3645 3782 5.047590 AGTGTATGTTACTCACCATTGTCGA 60.048 40.000 0.00 0.00 33.21 4.20
3657 3794 5.746721 TCACCATTGTCGATACATTAACTCG 59.253 40.000 0.00 0.00 34.97 4.18
3706 3844 2.689983 CAACCAATAAGAGATGTGGGCC 59.310 50.000 0.00 0.00 35.32 5.80
3713 3851 1.750399 GAGATGTGGGCCGTGCATT 60.750 57.895 0.00 0.00 0.00 3.56
3718 3856 0.250945 TGTGGGCCGTGCATTCTTTA 60.251 50.000 0.00 0.00 0.00 1.85
4083 4222 3.740321 CACGTTATGCAAAATTTGGCAGT 59.260 39.130 23.90 14.09 44.24 4.40
4099 4238 3.513912 TGGCAGTACACTATGCACTAAGT 59.486 43.478 7.09 0.00 44.37 2.24
4254 4393 5.822519 ACTCACTGAAATACTGAGTTTTGCA 59.177 36.000 0.00 0.00 41.53 4.08
4323 4462 8.311109 GGAGTCTTCTGATTCTTAGTCTTCTTT 58.689 37.037 0.00 0.00 0.00 2.52
4366 4508 8.686334 AGTTAAATACATGCATAAAACCTCTGG 58.314 33.333 0.00 0.00 0.00 3.86
4432 4574 9.151471 TGCTTGTGATAGTATTTTCTTGTCTAC 57.849 33.333 0.00 0.00 0.00 2.59
4696 4839 4.395231 GCATCCAAAAGAGTTAGTACCCAC 59.605 45.833 0.00 0.00 0.00 4.61
4699 4842 3.244318 CCAAAAGAGTTAGTACCCACGGT 60.244 47.826 0.00 0.00 40.16 4.83
4966 5115 6.071463 GTCGAAACAATTAAGTACTGCACTG 58.929 40.000 0.00 0.00 37.63 3.66
5062 5220 2.908688 TGAGCGTGTGCCATATATGT 57.091 45.000 11.73 0.00 44.31 2.29
5120 5278 5.390613 CGTTCAAATGGTTGACTAATGGAC 58.609 41.667 0.00 0.00 43.52 4.02
5125 5283 6.375174 TCAAATGGTTGACTAATGGACATGAG 59.625 38.462 0.00 0.00 38.88 2.90
5155 5313 8.752254 GCTGGTGTTTTTCTTATTGTAAGTTTC 58.248 33.333 0.00 0.00 0.00 2.78
5456 5718 8.884124 TCATTTTTCAGAATCCAATACTCCTT 57.116 30.769 0.00 0.00 0.00 3.36
5476 5738 8.202811 ACTCCTTCCGTTCCTAAATATAAAGTC 58.797 37.037 0.00 0.00 0.00 3.01
5497 5759 8.499403 AAGTCTTTTTAGAGATTCCACTATGC 57.501 34.615 0.00 0.00 0.00 3.14
5510 5772 3.568430 TCCACTATGCACTACATACGGAG 59.432 47.826 0.00 0.00 40.38 4.63
5511 5773 3.309388 CACTATGCACTACATACGGAGC 58.691 50.000 0.00 0.00 40.38 4.70
5519 5781 4.260375 GCACTACATACGGAGCAAAATGAG 60.260 45.833 0.00 0.00 0.00 2.90
5652 5914 1.056660 ACGGGTTCAACATCTGGACT 58.943 50.000 0.00 0.00 33.47 3.85
5729 5991 7.463383 GCACTAAACTTCTCATCTGTTATCACG 60.463 40.741 0.00 0.00 0.00 4.35
5863 6125 3.760684 GGCTCCCCATCATGCTTTATTAG 59.239 47.826 0.00 0.00 0.00 1.73
6135 6400 0.036388 ATTGTCCAGCCTGGTACGTG 60.036 55.000 11.27 0.00 39.03 4.49
6142 6407 1.681793 CAGCCTGGTACGTGCTACTAT 59.318 52.381 3.01 0.00 33.16 2.12
6150 6415 2.979814 ACGTGCTACTATGCATTCCA 57.020 45.000 3.54 0.00 45.23 3.53
6167 6432 0.599558 CCACATTGGTTGACAGGCTG 59.400 55.000 14.16 14.16 31.35 4.85
6169 6434 2.165167 CACATTGGTTGACAGGCTGAT 58.835 47.619 23.66 5.29 0.00 2.90
6175 6440 4.202245 TGGTTGACAGGCTGATAAGTAC 57.798 45.455 23.66 9.53 0.00 2.73
6177 6442 4.081642 TGGTTGACAGGCTGATAAGTACTC 60.082 45.833 23.66 6.00 0.00 2.59
6178 6443 4.434520 GTTGACAGGCTGATAAGTACTCC 58.565 47.826 23.66 0.00 0.00 3.85
6179 6444 3.031736 TGACAGGCTGATAAGTACTCCC 58.968 50.000 23.66 0.00 0.00 4.30
6182 6447 2.630580 CAGGCTGATAAGTACTCCCTCC 59.369 54.545 9.42 0.00 0.00 4.30
6183 6448 1.614413 GGCTGATAAGTACTCCCTCCG 59.386 57.143 0.00 0.00 0.00 4.63
6185 6450 2.694109 GCTGATAAGTACTCCCTCCGTT 59.306 50.000 0.00 0.00 0.00 4.44
6186 6451 3.243468 GCTGATAAGTACTCCCTCCGTTC 60.243 52.174 0.00 0.00 0.00 3.95
6188 6453 1.755179 TAAGTACTCCCTCCGTTCGG 58.245 55.000 4.74 4.74 0.00 4.30
6189 6454 0.038744 AAGTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
6193 6458 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
6195 6460 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
6196 6461 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
6197 6462 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
6198 6463 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
6199 6464 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
6200 6465 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
6201 6466 2.030007 TCCGTTCGGAATTACTTGTCGT 60.030 45.455 11.66 0.00 0.00 4.34
6202 6467 2.091588 CCGTTCGGAATTACTTGTCGTG 59.908 50.000 5.19 0.00 0.00 4.35
6203 6468 2.981805 CGTTCGGAATTACTTGTCGTGA 59.018 45.455 0.00 0.00 0.00 4.35
6204 6469 3.426191 CGTTCGGAATTACTTGTCGTGAA 59.574 43.478 0.00 0.00 0.00 3.18
6205 6470 4.084952 CGTTCGGAATTACTTGTCGTGAAA 60.085 41.667 0.00 0.00 0.00 2.69
6206 6471 5.371629 GTTCGGAATTACTTGTCGTGAAAG 58.628 41.667 0.00 0.00 0.00 2.62
6207 6472 4.624015 TCGGAATTACTTGTCGTGAAAGT 58.376 39.130 5.68 5.68 40.82 2.66
6208 6473 4.446385 TCGGAATTACTTGTCGTGAAAGTG 59.554 41.667 9.39 0.00 38.32 3.16
6209 6474 4.377022 CGGAATTACTTGTCGTGAAAGTGG 60.377 45.833 9.39 0.00 38.32 4.00
6210 6475 4.753107 GGAATTACTTGTCGTGAAAGTGGA 59.247 41.667 9.39 1.43 38.32 4.02
6211 6476 5.411669 GGAATTACTTGTCGTGAAAGTGGAT 59.588 40.000 9.39 3.14 38.32 3.41
6212 6477 5.862924 ATTACTTGTCGTGAAAGTGGATG 57.137 39.130 9.39 0.00 38.32 3.51
6213 6478 3.194005 ACTTGTCGTGAAAGTGGATGT 57.806 42.857 0.51 0.00 36.52 3.06
6214 6479 4.330944 ACTTGTCGTGAAAGTGGATGTA 57.669 40.909 0.51 0.00 36.52 2.29
6215 6480 4.894784 ACTTGTCGTGAAAGTGGATGTAT 58.105 39.130 0.51 0.00 36.52 2.29
6216 6481 4.929808 ACTTGTCGTGAAAGTGGATGTATC 59.070 41.667 0.51 0.00 36.52 2.24
6217 6482 4.801330 TGTCGTGAAAGTGGATGTATCT 57.199 40.909 0.00 0.00 0.00 1.98
6218 6483 5.907866 TGTCGTGAAAGTGGATGTATCTA 57.092 39.130 0.00 0.00 0.00 1.98
6219 6484 5.891451 TGTCGTGAAAGTGGATGTATCTAG 58.109 41.667 0.00 0.00 0.00 2.43
6220 6485 5.650703 TGTCGTGAAAGTGGATGTATCTAGA 59.349 40.000 0.00 0.00 0.00 2.43
6221 6486 6.321435 TGTCGTGAAAGTGGATGTATCTAGAT 59.679 38.462 10.73 10.73 0.00 1.98
6222 6487 6.638873 GTCGTGAAAGTGGATGTATCTAGATG 59.361 42.308 15.79 0.00 0.00 2.90
6223 6488 6.321435 TCGTGAAAGTGGATGTATCTAGATGT 59.679 38.462 15.79 1.25 0.00 3.06
6224 6489 7.501225 TCGTGAAAGTGGATGTATCTAGATGTA 59.499 37.037 15.79 4.44 0.00 2.29
6225 6490 8.300286 CGTGAAAGTGGATGTATCTAGATGTAT 58.700 37.037 15.79 9.11 0.00 2.29
6226 6491 9.988815 GTGAAAGTGGATGTATCTAGATGTATT 57.011 33.333 15.79 0.00 0.00 1.89
6251 6516 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
6252 6517 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
6253 6518 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
6254 6519 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
6255 6520 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
6256 6521 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
6257 6522 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
6258 6523 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
6259 6524 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
6260 6525 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
6261 6526 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
6262 6527 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
6263 6528 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
6264 6529 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
6265 6530 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
6266 6531 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
6267 6532 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
6268 6533 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
6269 6534 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
6270 6535 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
6271 6536 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
6272 6537 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
6273 6538 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
6274 6539 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
6275 6540 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
6276 6541 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
6277 6542 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
6278 6543 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
6279 6544 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
6280 6545 2.083628 ATTCCGAACGGAGGGAGTAT 57.916 50.000 15.34 3.38 46.06 2.12
6281 6546 1.108776 TTCCGAACGGAGGGAGTATG 58.891 55.000 15.34 0.00 46.06 2.39
6282 6547 0.256752 TCCGAACGGAGGGAGTATGA 59.743 55.000 12.04 0.00 39.76 2.15
6283 6548 0.669077 CCGAACGGAGGGAGTATGAG 59.331 60.000 7.53 0.00 37.50 2.90
6284 6549 1.390565 CGAACGGAGGGAGTATGAGT 58.609 55.000 0.00 0.00 0.00 3.41
6285 6550 1.065701 CGAACGGAGGGAGTATGAGTG 59.934 57.143 0.00 0.00 0.00 3.51
6286 6551 2.376109 GAACGGAGGGAGTATGAGTGA 58.624 52.381 0.00 0.00 0.00 3.41
6287 6552 2.526888 ACGGAGGGAGTATGAGTGAA 57.473 50.000 0.00 0.00 0.00 3.18
6288 6553 3.033659 ACGGAGGGAGTATGAGTGAAT 57.966 47.619 0.00 0.00 0.00 2.57
6289 6554 4.180377 ACGGAGGGAGTATGAGTGAATA 57.820 45.455 0.00 0.00 0.00 1.75
6290 6555 4.742012 ACGGAGGGAGTATGAGTGAATAT 58.258 43.478 0.00 0.00 0.00 1.28
6291 6556 5.148502 ACGGAGGGAGTATGAGTGAATATT 58.851 41.667 0.00 0.00 0.00 1.28
6292 6557 5.244178 ACGGAGGGAGTATGAGTGAATATTC 59.756 44.000 8.60 8.60 0.00 1.75
6293 6558 5.243954 CGGAGGGAGTATGAGTGAATATTCA 59.756 44.000 14.23 14.23 34.20 2.57
6294 6559 6.571344 CGGAGGGAGTATGAGTGAATATTCAG 60.571 46.154 18.47 0.00 37.98 3.02
6295 6560 6.107901 AGGGAGTATGAGTGAATATTCAGC 57.892 41.667 18.47 13.60 37.98 4.26
6296 6561 5.843421 AGGGAGTATGAGTGAATATTCAGCT 59.157 40.000 18.47 16.90 37.98 4.24
6297 6562 6.328672 AGGGAGTATGAGTGAATATTCAGCTT 59.671 38.462 18.47 13.21 37.98 3.74
6298 6563 6.426328 GGGAGTATGAGTGAATATTCAGCTTG 59.574 42.308 18.47 0.00 37.98 4.01
6299 6564 6.073331 GGAGTATGAGTGAATATTCAGCTTGC 60.073 42.308 18.47 13.80 37.98 4.01
6300 6565 5.762218 AGTATGAGTGAATATTCAGCTTGCC 59.238 40.000 18.47 5.94 37.98 4.52
6301 6566 4.226427 TGAGTGAATATTCAGCTTGCCT 57.774 40.909 18.47 10.63 37.98 4.75
6302 6567 4.592942 TGAGTGAATATTCAGCTTGCCTT 58.407 39.130 18.47 0.00 37.98 4.35
6303 6568 5.012239 TGAGTGAATATTCAGCTTGCCTTT 58.988 37.500 18.47 0.00 37.98 3.11
6304 6569 5.477984 TGAGTGAATATTCAGCTTGCCTTTT 59.522 36.000 18.47 0.00 37.98 2.27
6305 6570 5.958955 AGTGAATATTCAGCTTGCCTTTTC 58.041 37.500 18.47 2.64 37.98 2.29
6306 6571 4.795278 GTGAATATTCAGCTTGCCTTTTCG 59.205 41.667 18.47 0.00 37.98 3.46
6307 6572 4.699735 TGAATATTCAGCTTGCCTTTTCGA 59.300 37.500 14.23 0.00 32.50 3.71
6375 6641 4.871933 TCAGAAATGCTAGTGACACTGA 57.128 40.909 18.58 1.40 0.00 3.41
6384 6650 3.303395 GCTAGTGACACTGACAAAACTGC 60.303 47.826 18.58 4.89 0.00 4.40
6385 6651 2.991250 AGTGACACTGACAAAACTGCT 58.009 42.857 7.47 0.00 0.00 4.24
6386 6652 2.679837 AGTGACACTGACAAAACTGCTG 59.320 45.455 7.47 0.00 0.00 4.41
6442 6708 5.366477 TCACTGATTATCTGCATCCCTGTTA 59.634 40.000 0.00 0.00 0.00 2.41
6447 6713 8.206126 TGATTATCTGCATCCCTGTTATCTTA 57.794 34.615 0.00 0.00 0.00 2.10
6661 6927 5.779806 AGTTACAAGATTGATTTCGACCG 57.220 39.130 0.00 0.00 0.00 4.79
6691 6958 3.650942 TCTACCCTTGGTTGAGTGTTCAT 59.349 43.478 0.00 0.00 37.09 2.57
6694 6961 3.117512 ACCCTTGGTTGAGTGTTCATCTT 60.118 43.478 0.00 0.00 32.27 2.40
6702 6969 2.802247 TGAGTGTTCATCTTGTTGAGCG 59.198 45.455 0.00 0.00 30.24 5.03
6713 6980 1.226295 GTTGAGCGTTTATGGCGGC 60.226 57.895 0.00 0.00 35.00 6.53
6750 7017 5.989777 GCGTCCCTGTTGTATAATACAGATT 59.010 40.000 14.15 0.00 43.45 2.40
6753 7020 7.169308 CGTCCCTGTTGTATAATACAGATTGTC 59.831 40.741 14.15 3.67 43.45 3.18
6754 7021 8.204836 GTCCCTGTTGTATAATACAGATTGTCT 58.795 37.037 14.15 0.00 43.45 3.41
6755 7022 8.768397 TCCCTGTTGTATAATACAGATTGTCTT 58.232 33.333 14.15 0.00 43.45 3.01
6778 7045 9.177608 TCTTGTGCTAGTATTTATTGCTGAATT 57.822 29.630 0.00 0.00 0.00 2.17
6781 7048 8.190122 TGTGCTAGTATTTATTGCTGAATTTGG 58.810 33.333 0.00 0.00 0.00 3.28
6784 7051 8.078596 GCTAGTATTTATTGCTGAATTTGGAGG 58.921 37.037 0.00 0.00 0.00 4.30
6785 7052 7.352079 AGTATTTATTGCTGAATTTGGAGGG 57.648 36.000 0.00 0.00 0.00 4.30
6798 7065 6.609616 TGAATTTGGAGGGTGTTTTCTAGTTT 59.390 34.615 0.00 0.00 0.00 2.66
6799 7066 5.845391 TTTGGAGGGTGTTTTCTAGTTTG 57.155 39.130 0.00 0.00 0.00 2.93
6824 7091 9.695526 TGAATATATTTTGTTCTATGCATTGGC 57.304 29.630 3.54 0.55 41.68 4.52
6869 7139 0.318441 TCTGCAGCTGTAGTGGTGTC 59.682 55.000 27.95 3.59 37.70 3.67
6896 7166 4.147321 AGTCACTACGGGTTCTCTGTAAA 58.853 43.478 0.00 0.00 36.83 2.01
6915 7185 5.522097 TGTAAAATCGCGATCTTGCTAATGA 59.478 36.000 23.92 0.00 0.00 2.57
6921 7191 3.737774 CGCGATCTTGCTAATGATTCAGA 59.262 43.478 0.00 0.00 0.00 3.27
6925 7195 6.422100 GCGATCTTGCTAATGATTCAGACTAA 59.578 38.462 0.00 0.00 0.00 2.24
6965 7235 7.561237 TTTTGTTTCGCTTAACATCATTAGC 57.439 32.000 1.96 0.00 37.81 3.09
7005 7278 5.513233 ACTTAACTTGGATGATGCATTCCT 58.487 37.500 16.58 1.52 0.00 3.36
7027 7300 0.718343 CTGAAAGCGTCTACTGCTGC 59.282 55.000 0.00 0.00 43.14 5.25
7028 7301 0.318441 TGAAAGCGTCTACTGCTGCT 59.682 50.000 0.00 0.00 43.14 4.24
7029 7302 0.718343 GAAAGCGTCTACTGCTGCTG 59.282 55.000 4.89 4.89 43.14 4.41
7031 7304 0.888619 AAGCGTCTACTGCTGCTGTA 59.111 50.000 16.83 16.83 43.14 2.74
7032 7305 0.171455 AGCGTCTACTGCTGCTGTAC 59.829 55.000 14.34 8.53 42.14 2.90
7041 7319 2.270923 CTGCTGCTGTACTTATTCGCA 58.729 47.619 0.00 0.00 0.00 5.10
7043 7321 2.415168 TGCTGCTGTACTTATTCGCAAC 59.585 45.455 0.00 0.00 0.00 4.17
7052 7330 3.395639 ACTTATTCGCAACGAGTTGGAA 58.604 40.909 16.50 16.38 40.74 3.53
7054 7332 4.454504 ACTTATTCGCAACGAGTTGGAATT 59.545 37.500 23.85 12.78 39.21 2.17
7057 7335 3.262135 TCGCAACGAGTTGGAATTTTC 57.738 42.857 16.50 0.00 40.74 2.29
7060 7338 4.041723 CGCAACGAGTTGGAATTTTCTTT 58.958 39.130 16.50 0.00 40.74 2.52
7063 7341 6.410845 GCAACGAGTTGGAATTTTCTTTTTC 58.589 36.000 16.50 0.00 40.74 2.29
7081 7365 3.542712 TTCTTTCTTTTAGCTGCTGCG 57.457 42.857 13.43 0.00 45.42 5.18
7113 7397 5.009610 TGTTTAATTGAAGCTGACAAGGTCC 59.990 40.000 11.27 0.00 31.29 4.46
7141 7425 2.586357 GCCCGGAAGACTCGATGC 60.586 66.667 0.73 0.00 0.00 3.91
7149 7433 2.874010 AAGACTCGATGCGTGCCTCG 62.874 60.000 12.40 12.40 43.12 4.63
7160 7444 2.046988 TGCCTCGTCTGCCACATG 60.047 61.111 0.00 0.00 0.00 3.21
7161 7445 3.503363 GCCTCGTCTGCCACATGC 61.503 66.667 0.00 0.00 41.77 4.06
7172 7456 2.857592 GCCACATGCAGAATGGTAAG 57.142 50.000 13.53 0.00 40.94 2.34
7173 7457 1.202336 GCCACATGCAGAATGGTAAGC 60.202 52.381 13.53 0.00 40.94 3.09
7174 7458 2.372264 CCACATGCAGAATGGTAAGCT 58.628 47.619 5.67 0.00 40.94 3.74
7175 7459 2.357009 CCACATGCAGAATGGTAAGCTC 59.643 50.000 5.67 0.00 40.94 4.09
7176 7460 3.011818 CACATGCAGAATGGTAAGCTCA 58.988 45.455 0.00 0.00 40.94 4.26
7177 7461 3.630769 CACATGCAGAATGGTAAGCTCAT 59.369 43.478 0.00 0.00 40.94 2.90
7178 7462 3.881688 ACATGCAGAATGGTAAGCTCATC 59.118 43.478 0.00 0.00 40.94 2.92
7179 7463 2.923121 TGCAGAATGGTAAGCTCATCC 58.077 47.619 0.00 0.00 35.86 3.51
7180 7464 2.225467 GCAGAATGGTAAGCTCATCCC 58.775 52.381 0.00 0.00 35.86 3.85
7181 7465 2.856222 CAGAATGGTAAGCTCATCCCC 58.144 52.381 0.00 0.00 0.00 4.81
7182 7466 2.441001 CAGAATGGTAAGCTCATCCCCT 59.559 50.000 0.00 0.00 0.00 4.79
7183 7467 2.441001 AGAATGGTAAGCTCATCCCCTG 59.559 50.000 0.00 0.00 0.00 4.45
7184 7468 0.475906 ATGGTAAGCTCATCCCCTGC 59.524 55.000 0.00 0.00 0.00 4.85
7185 7469 0.621571 TGGTAAGCTCATCCCCTGCT 60.622 55.000 0.00 0.00 38.87 4.24
7186 7470 1.343985 TGGTAAGCTCATCCCCTGCTA 60.344 52.381 0.00 0.00 35.85 3.49
7187 7471 1.346068 GGTAAGCTCATCCCCTGCTAG 59.654 57.143 0.00 0.00 35.85 3.42
7188 7472 1.346068 GTAAGCTCATCCCCTGCTAGG 59.654 57.143 0.00 0.00 35.85 3.02
7189 7473 0.030705 AAGCTCATCCCCTGCTAGGA 60.031 55.000 4.00 0.00 37.67 2.94
7190 7474 0.471591 AGCTCATCCCCTGCTAGGAG 60.472 60.000 3.88 3.88 37.67 3.69
7191 7475 2.056985 CTCATCCCCTGCTAGGAGC 58.943 63.158 5.59 0.00 42.82 4.70
7202 7486 2.507339 GCTAGGAGCAACTCTAGCAG 57.493 55.000 14.99 0.00 42.88 4.24
7203 7487 2.028130 GCTAGGAGCAACTCTAGCAGA 58.972 52.381 14.99 0.00 42.88 4.26
7204 7488 2.223711 GCTAGGAGCAACTCTAGCAGAC 60.224 54.545 14.99 0.00 42.88 3.51
7205 7489 1.190643 AGGAGCAACTCTAGCAGACC 58.809 55.000 0.00 0.00 0.00 3.85
7206 7490 0.176910 GGAGCAACTCTAGCAGACCC 59.823 60.000 0.00 0.00 0.00 4.46
7207 7491 1.190643 GAGCAACTCTAGCAGACCCT 58.809 55.000 0.00 0.00 0.00 4.34
7208 7492 0.901124 AGCAACTCTAGCAGACCCTG 59.099 55.000 0.00 0.00 34.12 4.45
7217 7501 4.864334 CAGACCCTGCATCCCGCC 62.864 72.222 0.00 0.00 41.33 6.13
7222 7506 4.864334 CCTGCATCCCGCCCTGAC 62.864 72.222 0.00 0.00 41.33 3.51
7223 7507 4.864334 CTGCATCCCGCCCTGACC 62.864 72.222 0.00 0.00 41.33 4.02
7227 7511 4.468769 ATCCCGCCCTGACCCGTA 62.469 66.667 0.00 0.00 0.00 4.02
7228 7512 3.988050 ATCCCGCCCTGACCCGTAA 62.988 63.158 0.00 0.00 0.00 3.18
7229 7513 3.708544 CCCGCCCTGACCCGTAAA 61.709 66.667 0.00 0.00 0.00 2.01
7230 7514 2.348243 CCGCCCTGACCCGTAAAA 59.652 61.111 0.00 0.00 0.00 1.52
7231 7515 1.078001 CCGCCCTGACCCGTAAAAT 60.078 57.895 0.00 0.00 0.00 1.82
7232 7516 0.178533 CCGCCCTGACCCGTAAAATA 59.821 55.000 0.00 0.00 0.00 1.40
7233 7517 1.407162 CCGCCCTGACCCGTAAAATAA 60.407 52.381 0.00 0.00 0.00 1.40
7234 7518 1.667212 CGCCCTGACCCGTAAAATAAC 59.333 52.381 0.00 0.00 0.00 1.89
7235 7519 2.019249 GCCCTGACCCGTAAAATAACC 58.981 52.381 0.00 0.00 0.00 2.85
7236 7520 2.282407 CCCTGACCCGTAAAATAACCG 58.718 52.381 0.00 0.00 0.00 4.44
7237 7521 2.355007 CCCTGACCCGTAAAATAACCGT 60.355 50.000 0.00 0.00 0.00 4.83
7238 7522 2.931969 CCTGACCCGTAAAATAACCGTC 59.068 50.000 0.00 0.00 0.00 4.79
7239 7523 3.587923 CTGACCCGTAAAATAACCGTCA 58.412 45.455 0.00 0.00 0.00 4.35
7240 7524 3.995705 CTGACCCGTAAAATAACCGTCAA 59.004 43.478 0.00 0.00 29.61 3.18
7241 7525 4.384056 TGACCCGTAAAATAACCGTCAAA 58.616 39.130 0.00 0.00 0.00 2.69
7242 7526 4.818546 TGACCCGTAAAATAACCGTCAAAA 59.181 37.500 0.00 0.00 0.00 2.44
7243 7527 5.472820 TGACCCGTAAAATAACCGTCAAAAT 59.527 36.000 0.00 0.00 0.00 1.82
7244 7528 5.701855 ACCCGTAAAATAACCGTCAAAATG 58.298 37.500 0.00 0.00 0.00 2.32
7245 7529 5.241285 ACCCGTAAAATAACCGTCAAAATGT 59.759 36.000 0.00 0.00 0.00 2.71
7246 7530 5.569823 CCCGTAAAATAACCGTCAAAATGTG 59.430 40.000 0.00 0.00 0.00 3.21
7247 7531 5.569823 CCGTAAAATAACCGTCAAAATGTGG 59.430 40.000 0.00 0.00 0.00 4.17
7248 7532 5.569823 CGTAAAATAACCGTCAAAATGTGGG 59.430 40.000 0.00 0.00 0.00 4.61
7249 7533 5.538849 AAAATAACCGTCAAAATGTGGGT 57.461 34.783 0.00 0.00 0.00 4.51
7250 7534 4.776795 AATAACCGTCAAAATGTGGGTC 57.223 40.909 0.00 0.00 0.00 4.46
7251 7535 0.948678 AACCGTCAAAATGTGGGTCG 59.051 50.000 0.00 0.00 0.00 4.79
7252 7536 0.887387 ACCGTCAAAATGTGGGTCGG 60.887 55.000 0.00 0.00 39.97 4.79
7253 7537 1.582610 CCGTCAAAATGTGGGTCGGG 61.583 60.000 0.00 0.00 34.88 5.14
7254 7538 1.582610 CGTCAAAATGTGGGTCGGGG 61.583 60.000 0.00 0.00 0.00 5.73
7255 7539 1.605165 TCAAAATGTGGGTCGGGGC 60.605 57.895 0.00 0.00 0.00 5.80
7256 7540 2.675075 AAAATGTGGGTCGGGGCG 60.675 61.111 0.00 0.00 0.00 6.13
7257 7541 4.733542 AAATGTGGGTCGGGGCGG 62.734 66.667 0.00 0.00 0.00 6.13
7261 7545 4.646877 GTGGGTCGGGGCGGAAAA 62.647 66.667 0.00 0.00 0.00 2.29
7262 7546 3.887230 TGGGTCGGGGCGGAAAAA 61.887 61.111 0.00 0.00 0.00 1.94
7263 7547 3.367743 GGGTCGGGGCGGAAAAAC 61.368 66.667 0.00 0.00 0.00 2.43
7264 7548 3.367743 GGTCGGGGCGGAAAAACC 61.368 66.667 0.00 0.00 0.00 3.27
7265 7549 2.595172 GTCGGGGCGGAAAAACCA 60.595 61.111 0.00 0.00 38.90 3.67
7266 7550 2.281900 TCGGGGCGGAAAAACCAG 60.282 61.111 0.00 0.00 38.90 4.00
7267 7551 4.050934 CGGGGCGGAAAAACCAGC 62.051 66.667 0.00 0.00 38.90 4.85
7268 7552 2.600470 GGGGCGGAAAAACCAGCT 60.600 61.111 0.00 0.00 37.93 4.24
7269 7553 2.636412 GGGGCGGAAAAACCAGCTC 61.636 63.158 0.00 0.00 37.72 4.09
7270 7554 2.561373 GGCGGAAAAACCAGCTCG 59.439 61.111 0.00 0.00 37.93 5.03
7271 7555 1.964373 GGCGGAAAAACCAGCTCGA 60.964 57.895 0.00 0.00 37.93 4.04
7272 7556 1.305930 GGCGGAAAAACCAGCTCGAT 61.306 55.000 0.00 0.00 37.93 3.59
7273 7557 1.365699 GCGGAAAAACCAGCTCGATA 58.634 50.000 0.00 0.00 38.90 2.92
7274 7558 1.735571 GCGGAAAAACCAGCTCGATAA 59.264 47.619 0.00 0.00 38.90 1.75
7275 7559 2.223044 GCGGAAAAACCAGCTCGATAAG 60.223 50.000 0.00 0.00 38.90 1.73
7276 7560 3.259064 CGGAAAAACCAGCTCGATAAGA 58.741 45.455 0.00 0.00 38.90 2.10
7277 7561 3.062234 CGGAAAAACCAGCTCGATAAGAC 59.938 47.826 0.00 0.00 38.90 3.01
7278 7562 3.374367 GGAAAAACCAGCTCGATAAGACC 59.626 47.826 0.00 0.00 38.79 3.85
7279 7563 2.693267 AAACCAGCTCGATAAGACCC 57.307 50.000 0.00 0.00 0.00 4.46
7280 7564 0.831307 AACCAGCTCGATAAGACCCC 59.169 55.000 0.00 0.00 0.00 4.95
7281 7565 1.364171 CCAGCTCGATAAGACCCCG 59.636 63.158 0.00 0.00 0.00 5.73
7282 7566 1.300233 CAGCTCGATAAGACCCCGC 60.300 63.158 0.00 0.00 0.00 6.13
7283 7567 1.756950 AGCTCGATAAGACCCCGCA 60.757 57.895 0.00 0.00 0.00 5.69
7284 7568 1.115930 AGCTCGATAAGACCCCGCAT 61.116 55.000 0.00 0.00 0.00 4.73
7285 7569 0.667792 GCTCGATAAGACCCCGCATC 60.668 60.000 0.00 0.00 0.00 3.91
7286 7570 0.038159 CTCGATAAGACCCCGCATCC 60.038 60.000 0.00 0.00 0.00 3.51
7287 7571 1.004918 CGATAAGACCCCGCATCCC 60.005 63.158 0.00 0.00 0.00 3.85
7288 7572 1.004918 GATAAGACCCCGCATCCCG 60.005 63.158 0.00 0.00 0.00 5.14
7299 7583 3.377759 CATCCCGGCCCGCAAAAA 61.378 61.111 0.00 0.00 0.00 1.94
7315 7599 1.894512 AAAAATTTAGGGGGCGCGG 59.105 52.632 8.83 0.00 0.00 6.46
7316 7600 2.233605 AAAAATTTAGGGGGCGCGGC 62.234 55.000 26.39 26.39 0.00 6.53
7317 7601 3.948004 AAATTTAGGGGGCGCGGCA 62.948 57.895 34.30 13.23 0.00 5.69
7318 7602 3.948004 AATTTAGGGGGCGCGGCAA 62.948 57.895 34.30 19.56 0.00 4.52
7319 7603 3.948004 ATTTAGGGGGCGCGGCAAA 62.948 57.895 34.30 24.48 0.00 3.68
7320 7604 4.662707 TTAGGGGGCGCGGCAAAA 62.663 61.111 34.30 18.22 0.00 2.44
7321 7605 3.948004 TTAGGGGGCGCGGCAAAAT 62.948 57.895 34.30 18.39 0.00 1.82
7326 7610 4.062656 GGCGCGGCAAAATCCCAA 62.063 61.111 29.32 0.00 0.00 4.12
7327 7611 2.809174 GCGCGGCAAAATCCCAAC 60.809 61.111 8.83 0.00 0.00 3.77
7328 7612 2.961768 CGCGGCAAAATCCCAACT 59.038 55.556 0.00 0.00 0.00 3.16
7329 7613 1.154035 CGCGGCAAAATCCCAACTC 60.154 57.895 0.00 0.00 0.00 3.01
7330 7614 1.215382 GCGGCAAAATCCCAACTCC 59.785 57.895 0.00 0.00 0.00 3.85
7331 7615 1.531739 GCGGCAAAATCCCAACTCCA 61.532 55.000 0.00 0.00 0.00 3.86
7332 7616 0.965439 CGGCAAAATCCCAACTCCAA 59.035 50.000 0.00 0.00 0.00 3.53
7333 7617 1.336795 CGGCAAAATCCCAACTCCAAC 60.337 52.381 0.00 0.00 0.00 3.77
7334 7618 1.001974 GGCAAAATCCCAACTCCAACC 59.998 52.381 0.00 0.00 0.00 3.77
7335 7619 1.001974 GCAAAATCCCAACTCCAACCC 59.998 52.381 0.00 0.00 0.00 4.11
7336 7620 1.272212 CAAAATCCCAACTCCAACCCG 59.728 52.381 0.00 0.00 0.00 5.28
7337 7621 0.251608 AAATCCCAACTCCAACCCGG 60.252 55.000 0.00 0.00 0.00 5.73
7338 7622 2.150014 AATCCCAACTCCAACCCGGG 62.150 60.000 22.25 22.25 38.34 5.73
7339 7623 3.253838 CCCAACTCCAACCCGGGA 61.254 66.667 32.02 2.56 39.44 5.14
7340 7624 2.836187 CCCAACTCCAACCCGGGAA 61.836 63.158 32.02 8.57 39.44 3.97
7341 7625 1.151908 CCAACTCCAACCCGGGAAA 59.848 57.895 32.02 8.16 36.27 3.13
7342 7626 0.468400 CCAACTCCAACCCGGGAAAA 60.468 55.000 32.02 8.56 36.27 2.29
7343 7627 0.671796 CAACTCCAACCCGGGAAAAC 59.328 55.000 32.02 0.00 36.27 2.43
7344 7628 0.259356 AACTCCAACCCGGGAAAACA 59.741 50.000 32.02 5.54 36.27 2.83
7345 7629 0.466739 ACTCCAACCCGGGAAAACAC 60.467 55.000 32.02 0.00 36.27 3.32
7346 7630 1.512156 CTCCAACCCGGGAAAACACG 61.512 60.000 32.02 6.81 36.27 4.49
7352 7636 1.655885 CCGGGAAAACACGGGTTTC 59.344 57.895 17.60 10.79 46.20 2.78
7353 7637 1.655885 CGGGAAAACACGGGTTTCC 59.344 57.895 17.60 18.74 46.20 3.13
7354 7638 1.798234 CGGGAAAACACGGGTTTCCC 61.798 60.000 28.88 28.88 46.20 3.97
7379 7663 4.752879 GCTACGGTGCCCTGCGAA 62.753 66.667 0.00 0.00 0.00 4.70
7380 7664 2.186903 CTACGGTGCCCTGCGAAT 59.813 61.111 0.00 0.00 0.00 3.34
7381 7665 1.449601 CTACGGTGCCCTGCGAATT 60.450 57.895 0.00 0.00 0.00 2.17
7382 7666 0.179094 CTACGGTGCCCTGCGAATTA 60.179 55.000 0.00 0.00 0.00 1.40
7383 7667 0.179094 TACGGTGCCCTGCGAATTAG 60.179 55.000 0.00 0.00 0.00 1.73
7384 7668 2.823829 CGGTGCCCTGCGAATTAGC 61.824 63.158 3.27 3.27 37.71 3.09
7385 7669 2.709475 GTGCCCTGCGAATTAGCG 59.291 61.111 6.05 1.33 40.67 4.26
7386 7670 2.513666 TGCCCTGCGAATTAGCGG 60.514 61.111 12.05 12.05 42.86 5.52
7387 7671 2.203015 GCCCTGCGAATTAGCGGA 60.203 61.111 19.68 0.70 45.94 5.54
7388 7672 1.817941 GCCCTGCGAATTAGCGGAA 60.818 57.895 19.68 0.00 45.94 4.30
7389 7673 1.776034 GCCCTGCGAATTAGCGGAAG 61.776 60.000 19.68 11.82 45.94 3.46
7401 7685 3.353836 CGGAAGCGGTTGGTGGTG 61.354 66.667 3.70 0.00 0.00 4.17
7402 7686 2.983592 GGAAGCGGTTGGTGGTGG 60.984 66.667 3.70 0.00 0.00 4.61
7403 7687 2.983592 GAAGCGGTTGGTGGTGGG 60.984 66.667 3.70 0.00 0.00 4.61
7404 7688 3.485346 GAAGCGGTTGGTGGTGGGA 62.485 63.158 3.70 0.00 0.00 4.37
7405 7689 3.785122 AAGCGGTTGGTGGTGGGAC 62.785 63.158 0.00 0.00 0.00 4.46
7406 7690 4.572571 GCGGTTGGTGGTGGGACA 62.573 66.667 0.00 0.00 0.00 4.02
7407 7691 2.434331 CGGTTGGTGGTGGGACAT 59.566 61.111 0.00 0.00 44.52 3.06
7408 7692 1.228429 CGGTTGGTGGTGGGACATT 60.228 57.895 0.00 0.00 44.52 2.71
7409 7693 0.825840 CGGTTGGTGGTGGGACATTT 60.826 55.000 0.00 0.00 44.52 2.32
7410 7694 1.419381 GGTTGGTGGTGGGACATTTT 58.581 50.000 0.00 0.00 44.52 1.82
7411 7695 1.343142 GGTTGGTGGTGGGACATTTTC 59.657 52.381 0.00 0.00 44.52 2.29
7412 7696 2.035632 GTTGGTGGTGGGACATTTTCA 58.964 47.619 0.00 0.00 44.52 2.69
7413 7697 1.993956 TGGTGGTGGGACATTTTCAG 58.006 50.000 0.00 0.00 44.52 3.02
7414 7698 0.603065 GGTGGTGGGACATTTTCAGC 59.397 55.000 0.00 0.00 44.52 4.26
7415 7699 1.327303 GTGGTGGGACATTTTCAGCA 58.673 50.000 0.00 0.00 44.52 4.41
7416 7700 1.895131 GTGGTGGGACATTTTCAGCAT 59.105 47.619 0.00 0.00 44.52 3.79
7417 7701 1.894466 TGGTGGGACATTTTCAGCATG 59.106 47.619 0.00 0.00 44.52 4.06
7418 7702 1.895131 GGTGGGACATTTTCAGCATGT 59.105 47.619 0.00 0.00 44.52 3.21
7419 7703 2.299867 GGTGGGACATTTTCAGCATGTT 59.700 45.455 0.00 0.00 44.52 2.71
7420 7704 3.244181 GGTGGGACATTTTCAGCATGTTT 60.244 43.478 0.00 0.00 44.52 2.83
7421 7705 3.742369 GTGGGACATTTTCAGCATGTTTG 59.258 43.478 0.00 0.00 44.52 2.93
7422 7706 3.244146 TGGGACATTTTCAGCATGTTTGG 60.244 43.478 0.00 0.00 34.89 3.28
7423 7707 3.244181 GGGACATTTTCAGCATGTTTGGT 60.244 43.478 0.00 0.00 34.89 3.67
7424 7708 4.379652 GGACATTTTCAGCATGTTTGGTT 58.620 39.130 0.00 0.00 34.89 3.67
7425 7709 4.448732 GGACATTTTCAGCATGTTTGGTTC 59.551 41.667 0.00 0.00 34.89 3.62
7426 7710 5.021033 ACATTTTCAGCATGTTTGGTTCA 57.979 34.783 0.00 0.00 37.40 3.18
7427 7711 4.810491 ACATTTTCAGCATGTTTGGTTCAC 59.190 37.500 0.00 0.00 37.40 3.18
7428 7712 2.772568 TTCAGCATGTTTGGTTCACG 57.227 45.000 0.00 0.00 37.40 4.35
7429 7713 1.674359 TCAGCATGTTTGGTTCACGT 58.326 45.000 0.00 0.00 37.40 4.49
7430 7714 1.601903 TCAGCATGTTTGGTTCACGTC 59.398 47.619 0.00 0.00 37.40 4.34
7431 7715 0.951558 AGCATGTTTGGTTCACGTCC 59.048 50.000 0.00 0.00 0.00 4.79
7432 7716 0.951558 GCATGTTTGGTTCACGTCCT 59.048 50.000 0.00 0.00 0.00 3.85
7433 7717 1.334960 GCATGTTTGGTTCACGTCCTG 60.335 52.381 0.00 0.00 0.00 3.86
7434 7718 1.266718 CATGTTTGGTTCACGTCCTGG 59.733 52.381 0.00 0.00 0.00 4.45
7435 7719 0.542333 TGTTTGGTTCACGTCCTGGA 59.458 50.000 0.00 0.00 0.00 3.86
7436 7720 1.142060 TGTTTGGTTCACGTCCTGGAT 59.858 47.619 0.00 0.00 0.00 3.41
7437 7721 1.535462 GTTTGGTTCACGTCCTGGATG 59.465 52.381 14.35 14.35 0.00 3.51
7438 7722 0.762418 TTGGTTCACGTCCTGGATGT 59.238 50.000 15.79 15.79 31.28 3.06
7439 7723 0.762418 TGGTTCACGTCCTGGATGTT 59.238 50.000 18.77 2.23 28.28 2.71
7440 7724 1.142060 TGGTTCACGTCCTGGATGTTT 59.858 47.619 18.77 0.00 28.28 2.83
7441 7725 1.535462 GGTTCACGTCCTGGATGTTTG 59.465 52.381 18.77 9.26 28.28 2.93
7442 7726 2.489971 GTTCACGTCCTGGATGTTTGA 58.510 47.619 18.77 11.44 28.28 2.69
7443 7727 3.074412 GTTCACGTCCTGGATGTTTGAT 58.926 45.455 18.77 0.00 28.28 2.57
7444 7728 2.698803 TCACGTCCTGGATGTTTGATG 58.301 47.619 18.77 7.85 28.28 3.07
7445 7729 1.131126 CACGTCCTGGATGTTTGATGC 59.869 52.381 18.77 0.00 28.28 3.91
7446 7730 0.734889 CGTCCTGGATGTTTGATGCC 59.265 55.000 7.79 0.00 0.00 4.40
7447 7731 1.679944 CGTCCTGGATGTTTGATGCCT 60.680 52.381 7.79 0.00 0.00 4.75
7448 7732 1.747355 GTCCTGGATGTTTGATGCCTG 59.253 52.381 0.00 0.00 0.00 4.85
7449 7733 1.108776 CCTGGATGTTTGATGCCTGG 58.891 55.000 0.00 0.00 33.96 4.45
7450 7734 0.458669 CTGGATGTTTGATGCCTGGC 59.541 55.000 12.87 12.87 0.00 4.85
7451 7735 0.971959 TGGATGTTTGATGCCTGGCC 60.972 55.000 17.53 0.00 0.00 5.36
7452 7736 0.685458 GGATGTTTGATGCCTGGCCT 60.685 55.000 17.53 6.10 0.00 5.19
7453 7737 0.458669 GATGTTTGATGCCTGGCCTG 59.541 55.000 17.53 2.54 0.00 4.85
7454 7738 0.974010 ATGTTTGATGCCTGGCCTGG 60.974 55.000 23.89 23.89 0.00 4.45
7455 7739 2.037687 TTTGATGCCTGGCCTGGG 59.962 61.111 28.23 19.17 0.00 4.45
7456 7740 2.546643 TTTGATGCCTGGCCTGGGA 61.547 57.895 28.23 26.67 0.00 4.37
7457 7741 2.786512 TTTGATGCCTGGCCTGGGAC 62.787 60.000 28.23 19.68 0.00 4.46
7458 7742 4.512914 GATGCCTGGCCTGGGACC 62.513 72.222 28.23 15.24 0.00 4.46
7469 7753 4.664267 TGGGACCTCCAGGCAGCT 62.664 66.667 0.00 0.00 41.46 4.24
7470 7754 4.106925 GGGACCTCCAGGCAGCTG 62.107 72.222 10.11 10.11 39.32 4.24
7471 7755 3.325753 GGACCTCCAGGCAGCTGT 61.326 66.667 16.64 0.00 39.32 4.40
7472 7756 2.753029 GACCTCCAGGCAGCTGTT 59.247 61.111 16.64 0.77 39.32 3.16
7473 7757 1.073897 GACCTCCAGGCAGCTGTTT 59.926 57.895 16.64 0.35 39.32 2.83
7474 7758 1.228367 ACCTCCAGGCAGCTGTTTG 60.228 57.895 16.64 13.48 39.32 2.93
7475 7759 1.975407 CCTCCAGGCAGCTGTTTGG 60.975 63.158 24.40 24.40 0.00 3.28
7476 7760 1.228367 CTCCAGGCAGCTGTTTGGT 60.228 57.895 27.14 4.55 32.51 3.67
7477 7761 0.825010 CTCCAGGCAGCTGTTTGGTT 60.825 55.000 27.14 3.95 32.51 3.67
7478 7762 1.108727 TCCAGGCAGCTGTTTGGTTG 61.109 55.000 27.14 13.35 32.51 3.77
7479 7763 1.364901 CAGGCAGCTGTTTGGTTGG 59.635 57.895 16.64 0.00 0.00 3.77
7480 7764 1.833934 AGGCAGCTGTTTGGTTGGG 60.834 57.895 16.64 0.00 0.00 4.12
7481 7765 2.133641 GGCAGCTGTTTGGTTGGGT 61.134 57.895 16.64 0.00 0.00 4.51
7482 7766 0.825840 GGCAGCTGTTTGGTTGGGTA 60.826 55.000 16.64 0.00 0.00 3.69
7483 7767 0.313987 GCAGCTGTTTGGTTGGGTAC 59.686 55.000 16.64 0.00 0.00 3.34
7497 7781 3.261250 GGTACCTGGTGACGAGAGA 57.739 57.895 10.23 0.00 0.00 3.10
7498 7782 1.096416 GGTACCTGGTGACGAGAGAG 58.904 60.000 10.23 0.00 0.00 3.20
7499 7783 0.452585 GTACCTGGTGACGAGAGAGC 59.547 60.000 10.23 0.00 0.00 4.09
7500 7784 0.680280 TACCTGGTGACGAGAGAGCC 60.680 60.000 10.23 0.00 0.00 4.70
7501 7785 2.487428 CTGGTGACGAGAGAGCCG 59.513 66.667 0.00 0.00 0.00 5.52
7502 7786 3.057547 CTGGTGACGAGAGAGCCGG 62.058 68.421 0.00 0.00 0.00 6.13
7503 7787 4.500116 GGTGACGAGAGAGCCGGC 62.500 72.222 21.89 21.89 35.21 6.13
7504 7788 4.500116 GTGACGAGAGAGCCGGCC 62.500 72.222 26.15 15.34 33.31 6.13
7505 7789 4.742649 TGACGAGAGAGCCGGCCT 62.743 66.667 26.15 20.44 33.31 5.19
7506 7790 4.200283 GACGAGAGAGCCGGCCTG 62.200 72.222 26.15 10.69 0.00 4.85
7520 7804 2.657297 GCCTGGCCACAAAATCTGA 58.343 52.632 7.66 0.00 0.00 3.27
7521 7805 0.244721 GCCTGGCCACAAAATCTGAC 59.755 55.000 7.66 0.00 0.00 3.51
7522 7806 1.619654 CCTGGCCACAAAATCTGACA 58.380 50.000 0.00 0.00 0.00 3.58
7523 7807 1.962807 CCTGGCCACAAAATCTGACAA 59.037 47.619 0.00 0.00 0.00 3.18
7524 7808 2.288395 CCTGGCCACAAAATCTGACAAC 60.288 50.000 0.00 0.00 0.00 3.32
7525 7809 1.336440 TGGCCACAAAATCTGACAACG 59.664 47.619 0.00 0.00 0.00 4.10
7526 7810 1.408422 GCCACAAAATCTGACAACGC 58.592 50.000 0.00 0.00 0.00 4.84
7527 7811 1.268999 GCCACAAAATCTGACAACGCA 60.269 47.619 0.00 0.00 0.00 5.24
7528 7812 2.797792 GCCACAAAATCTGACAACGCAA 60.798 45.455 0.00 0.00 0.00 4.85
7529 7813 3.641648 CCACAAAATCTGACAACGCAAT 58.358 40.909 0.00 0.00 0.00 3.56
7530 7814 4.050553 CCACAAAATCTGACAACGCAATT 58.949 39.130 0.00 0.00 0.00 2.32
7531 7815 5.218885 CCACAAAATCTGACAACGCAATTA 58.781 37.500 0.00 0.00 0.00 1.40
7532 7816 5.343058 CCACAAAATCTGACAACGCAATTAG 59.657 40.000 0.00 0.00 0.00 1.73
7533 7817 4.917415 ACAAAATCTGACAACGCAATTAGC 59.083 37.500 0.00 0.00 40.87 3.09
7534 7818 3.764885 AATCTGACAACGCAATTAGCC 57.235 42.857 0.00 0.00 41.38 3.93
7535 7819 2.472695 TCTGACAACGCAATTAGCCT 57.527 45.000 0.00 0.00 41.38 4.58
7536 7820 2.076100 TCTGACAACGCAATTAGCCTG 58.924 47.619 0.00 0.00 41.38 4.85
7537 7821 1.131126 CTGACAACGCAATTAGCCTGG 59.869 52.381 0.00 0.00 41.38 4.45
7538 7822 0.179163 GACAACGCAATTAGCCTGGC 60.179 55.000 11.65 11.65 41.38 4.85
7539 7823 1.139520 CAACGCAATTAGCCTGGCC 59.860 57.895 16.57 0.00 41.38 5.36
7540 7824 2.052104 AACGCAATTAGCCTGGCCC 61.052 57.895 16.57 0.00 41.38 5.80
7541 7825 3.219198 CGCAATTAGCCTGGCCCC 61.219 66.667 16.57 0.00 41.38 5.80
7542 7826 2.043046 GCAATTAGCCTGGCCCCA 60.043 61.111 16.57 0.00 37.23 4.96
7543 7827 1.685421 GCAATTAGCCTGGCCCCAA 60.685 57.895 16.57 7.76 37.23 4.12
7544 7828 1.264045 GCAATTAGCCTGGCCCCAAA 61.264 55.000 16.57 5.44 37.23 3.28
7545 7829 1.274712 CAATTAGCCTGGCCCCAAAA 58.725 50.000 16.57 2.79 0.00 2.44
7546 7830 1.066215 CAATTAGCCTGGCCCCAAAAC 60.066 52.381 16.57 0.00 0.00 2.43
7547 7831 0.970427 ATTAGCCTGGCCCCAAAACG 60.970 55.000 16.57 0.00 0.00 3.60
7548 7832 2.070399 TTAGCCTGGCCCCAAAACGA 62.070 55.000 16.57 0.00 0.00 3.85
7549 7833 2.478335 TAGCCTGGCCCCAAAACGAG 62.478 60.000 16.57 0.00 0.00 4.18
7550 7834 2.676471 CCTGGCCCCAAAACGAGG 60.676 66.667 0.00 0.00 0.00 4.63
7551 7835 3.373565 CTGGCCCCAAAACGAGGC 61.374 66.667 0.00 0.00 46.37 4.70
7554 7838 2.650778 GCCCCAAAACGAGGCAAG 59.349 61.111 0.00 0.00 46.34 4.01
7555 7839 2.200337 GCCCCAAAACGAGGCAAGT 61.200 57.895 0.00 0.00 46.34 3.16
7556 7840 1.744320 GCCCCAAAACGAGGCAAGTT 61.744 55.000 0.00 0.00 46.34 2.66
7557 7841 0.031994 CCCCAAAACGAGGCAAGTTG 59.968 55.000 0.00 0.00 31.43 3.16
7558 7842 0.031994 CCCAAAACGAGGCAAGTTGG 59.968 55.000 4.75 0.00 38.77 3.77
7559 7843 0.744281 CCAAAACGAGGCAAGTTGGT 59.256 50.000 4.75 0.00 35.12 3.67
7560 7844 1.136110 CCAAAACGAGGCAAGTTGGTT 59.864 47.619 4.75 0.00 35.12 3.67
7561 7845 2.359531 CCAAAACGAGGCAAGTTGGTTA 59.640 45.455 4.75 0.00 35.12 2.85
7562 7846 3.550030 CCAAAACGAGGCAAGTTGGTTAG 60.550 47.826 4.75 0.00 35.12 2.34
7563 7847 1.235724 AACGAGGCAAGTTGGTTAGC 58.764 50.000 4.75 0.00 0.00 3.09
7567 7851 2.171635 GGCAAGTTGGTTAGCCTCG 58.828 57.895 4.75 0.00 43.70 4.63
7568 7852 1.305930 GGCAAGTTGGTTAGCCTCGG 61.306 60.000 4.75 0.00 43.70 4.63
7569 7853 1.923227 GCAAGTTGGTTAGCCTCGGC 61.923 60.000 4.75 0.00 42.33 5.54
7570 7854 1.002502 AAGTTGGTTAGCCTCGGCC 60.003 57.895 3.92 0.00 43.17 6.13
7571 7855 1.774894 AAGTTGGTTAGCCTCGGCCA 61.775 55.000 2.24 0.00 43.17 5.36
7572 7856 1.745489 GTTGGTTAGCCTCGGCCAG 60.745 63.158 2.24 0.00 43.17 4.85
7573 7857 2.966732 TTGGTTAGCCTCGGCCAGG 61.967 63.158 14.87 14.87 46.82 4.45
7580 7864 4.020617 CCTCGGCCAGGCAAGTGA 62.021 66.667 15.19 4.23 34.56 3.41
7581 7865 2.032528 CTCGGCCAGGCAAGTGAA 59.967 61.111 15.19 0.00 0.00 3.18
7582 7866 1.377725 CTCGGCCAGGCAAGTGAAT 60.378 57.895 15.19 0.00 0.00 2.57
7583 7867 0.962356 CTCGGCCAGGCAAGTGAATT 60.962 55.000 15.19 0.00 0.00 2.17
7584 7868 0.960364 TCGGCCAGGCAAGTGAATTC 60.960 55.000 15.19 0.00 0.00 2.17
7585 7869 1.508088 GGCCAGGCAAGTGAATTCG 59.492 57.895 15.19 0.00 0.00 3.34
7586 7870 1.508088 GCCAGGCAAGTGAATTCGG 59.492 57.895 6.55 0.00 0.00 4.30
7587 7871 0.960364 GCCAGGCAAGTGAATTCGGA 60.960 55.000 6.55 0.00 0.00 4.55
7588 7872 0.804989 CCAGGCAAGTGAATTCGGAC 59.195 55.000 0.04 0.00 0.00 4.79
7589 7873 0.443869 CAGGCAAGTGAATTCGGACG 59.556 55.000 0.04 0.00 0.00 4.79
7590 7874 1.134694 GGCAAGTGAATTCGGACGC 59.865 57.895 0.04 1.29 0.00 5.19
7591 7875 1.134694 GCAAGTGAATTCGGACGCC 59.865 57.895 0.04 0.00 0.00 5.68
7592 7876 1.298859 GCAAGTGAATTCGGACGCCT 61.299 55.000 0.04 0.00 0.00 5.52
7593 7877 0.443869 CAAGTGAATTCGGACGCCTG 59.556 55.000 0.04 0.00 0.00 4.85
7594 7878 0.673644 AAGTGAATTCGGACGCCTGG 60.674 55.000 0.04 0.00 0.00 4.45
7595 7879 2.106683 GTGAATTCGGACGCCTGGG 61.107 63.158 0.04 0.00 0.00 4.45
7596 7880 3.202706 GAATTCGGACGCCTGGGC 61.203 66.667 0.82 0.82 37.85 5.36
7597 7881 3.682292 GAATTCGGACGCCTGGGCT 62.682 63.158 10.04 0.00 39.32 5.19
7598 7882 3.268103 AATTCGGACGCCTGGGCTT 62.268 57.895 10.04 0.00 39.32 4.35
7599 7883 3.976701 ATTCGGACGCCTGGGCTTG 62.977 63.158 10.04 0.00 39.32 4.01
7603 7887 4.096003 GACGCCTGGGCTTGCCTA 62.096 66.667 11.71 4.43 39.32 3.93
7604 7888 3.622060 GACGCCTGGGCTTGCCTAA 62.622 63.158 11.71 0.00 39.32 2.69
7605 7889 2.361104 CGCCTGGGCTTGCCTAAA 60.361 61.111 11.71 0.00 39.32 1.85
7606 7890 2.409870 CGCCTGGGCTTGCCTAAAG 61.410 63.158 11.71 7.01 39.32 1.85
7607 7891 2.054453 GCCTGGGCTTGCCTAAAGG 61.054 63.158 17.86 17.86 36.30 3.11
7608 7892 1.691219 CCTGGGCTTGCCTAAAGGA 59.309 57.895 17.52 0.00 36.30 3.36
7609 7893 0.394899 CCTGGGCTTGCCTAAAGGAG 60.395 60.000 17.52 0.02 36.30 3.69
7610 7894 1.000896 TGGGCTTGCCTAAAGGAGC 60.001 57.895 11.71 0.52 36.30 4.70
7611 7895 1.000896 GGGCTTGCCTAAAGGAGCA 60.001 57.895 11.71 0.00 36.93 4.26
7612 7896 1.034292 GGGCTTGCCTAAAGGAGCAG 61.034 60.000 11.71 0.12 40.73 4.24
7613 7897 1.661498 GGCTTGCCTAAAGGAGCAGC 61.661 60.000 10.80 8.42 40.73 5.25
7614 7898 1.661498 GCTTGCCTAAAGGAGCAGCC 61.661 60.000 0.00 0.00 40.73 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.937706 CCTCTCACTGAACCTGCTAAATG 59.062 47.826 0.00 0.00 0.00 2.32
51 52 4.221924 TGGTCATCATACCTCGAAAGACAA 59.778 41.667 0.00 0.00 40.44 3.18
59 60 3.068732 ACATGTCTGGTCATCATACCTCG 59.931 47.826 0.00 0.00 40.44 4.63
127 138 5.767168 GGCACTCTAGATAATTTGGCTGAAT 59.233 40.000 0.00 0.00 0.00 2.57
150 161 8.924511 TTTCCTTCTTAGCCATTAGATATTGG 57.075 34.615 0.00 0.00 36.03 3.16
217 228 8.960591 TCACTCTGAAAATCTTTGAGTTCTTTT 58.039 29.630 0.00 0.00 36.05 2.27
298 309 3.072476 TGCTGGGGCATATTAAGGTCTAC 59.928 47.826 0.00 0.00 44.28 2.59
348 360 4.805719 CAGAAATGTGTAGAGCGCTATTCA 59.194 41.667 11.50 9.05 0.00 2.57
355 367 4.688879 TGGTAAACAGAAATGTGTAGAGCG 59.311 41.667 0.00 0.00 0.00 5.03
370 382 2.616376 GTGTCATGTGTGCTGGTAAACA 59.384 45.455 0.00 0.00 0.00 2.83
380 392 5.415389 TGGAATTCATTAGGTGTCATGTGTG 59.585 40.000 7.93 0.00 0.00 3.82
388 400 4.574674 TGAGCTGGAATTCATTAGGTGT 57.425 40.909 7.93 0.00 0.00 4.16
494 513 2.164338 TGGCCCGAAAATTAAGTGTCC 58.836 47.619 0.00 0.00 0.00 4.02
555 575 8.088463 ACTCATTCTGAAAGATATCTTCACCT 57.912 34.615 18.19 2.71 46.36 4.00
796 824 1.739338 CTGATCGGCTTCGCTACCCT 61.739 60.000 0.00 0.00 0.00 4.34
801 829 0.176680 ATGTTCTGATCGGCTTCGCT 59.823 50.000 0.00 0.00 0.00 4.93
889 920 0.036294 GAAACGAGCTGGGCCTAACT 60.036 55.000 4.53 0.00 0.00 2.24
967 1033 0.307453 CGATCTCCGAGACAGCTCTG 59.693 60.000 0.00 0.00 41.76 3.35
1080 1151 3.418744 GAAGAGGTCGAGGGAGCGC 62.419 68.421 0.00 0.00 45.26 5.92
1177 1248 3.038945 GCAGGCGGGCTAGGGTTTA 62.039 63.158 2.84 0.00 0.00 2.01
1190 1261 0.808060 GAGAAGAGGTTAGCGCAGGC 60.808 60.000 11.47 0.00 40.37 4.85
1192 1263 2.535331 GAAGAGAAGAGGTTAGCGCAG 58.465 52.381 11.47 0.00 0.00 5.18
1195 1266 1.133407 AGCGAAGAGAAGAGGTTAGCG 59.867 52.381 0.00 0.00 0.00 4.26
1231 1302 2.560861 GCGAATCCGTTTGCTGCA 59.439 55.556 0.00 0.00 40.84 4.41
1293 1364 3.350219 TGCAGACAAAGGTAGGAATCC 57.650 47.619 0.00 0.00 0.00 3.01
1295 1366 5.440610 CCTTATGCAGACAAAGGTAGGAAT 58.559 41.667 10.32 0.00 35.95 3.01
1318 1391 1.079197 CAAATTTTCAGGGCCGCCC 60.079 57.895 22.09 22.09 45.90 6.13
1487 1560 1.616374 GGACGGGGCTTTTCATTCAAA 59.384 47.619 0.00 0.00 0.00 2.69
1504 1577 4.564769 TGTTGTTCAATTTGAAAAGCGGAC 59.435 37.500 13.21 4.51 38.22 4.79
1505 1578 4.748892 TGTTGTTCAATTTGAAAAGCGGA 58.251 34.783 13.21 0.00 38.22 5.54
1545 1618 1.878953 ACGAGCACGAAAATTCCTGT 58.121 45.000 11.40 0.00 42.66 4.00
1551 1624 4.201783 GCCATTACTAACGAGCACGAAAAT 60.202 41.667 11.40 0.00 42.66 1.82
1557 1630 0.928229 CGGCCATTACTAACGAGCAC 59.072 55.000 2.24 0.00 0.00 4.40
1573 1646 1.822506 AGTTTCTTTTCCCTAGCGGC 58.177 50.000 0.00 0.00 0.00 6.53
1592 1665 5.044476 TGCTCCTGTTCTTTAAATCCCCATA 60.044 40.000 0.00 0.00 0.00 2.74
1669 1742 4.515191 TCTTGTGTGCCTGACAAAGATAAC 59.485 41.667 0.00 0.00 35.91 1.89
1732 1805 0.947244 GCATAAGCGGTGAAGGGATG 59.053 55.000 0.00 0.00 0.00 3.51
1813 1886 7.913674 AGAGGAACTTCAGTAGCAATAAAAG 57.086 36.000 0.00 0.00 41.55 2.27
1894 1969 2.109229 ACCTATCAGATGACCCAGGG 57.891 55.000 2.85 2.85 0.00 4.45
1946 2021 0.394938 AGCCATGTTGTACGGTGACA 59.605 50.000 0.00 0.00 0.00 3.58
1951 2026 1.750193 ATGGAAGCCATGTTGTACGG 58.250 50.000 0.00 0.00 43.39 4.02
1987 2062 6.959639 ATTCCACAGTTGACACACTTAATT 57.040 33.333 0.00 0.00 0.00 1.40
2039 2114 8.511321 ACATATCAAGACGTGAGCAATTTAAAA 58.489 29.630 0.00 0.00 40.43 1.52
2160 2235 7.035004 TGAAAGTGACACTTGAATGAAAAAGG 58.965 34.615 21.24 0.00 38.66 3.11
2161 2236 8.638685 ATGAAAGTGACACTTGAATGAAAAAG 57.361 30.769 21.24 0.00 38.66 2.27
2190 2265 4.082245 GGTGCCAAACAAGCTATAACACAT 60.082 41.667 0.00 0.00 0.00 3.21
2291 2410 5.070001 CAGAAGAACATGGAGGGTTTAACA 58.930 41.667 0.00 0.00 0.00 2.41
2420 2540 3.517500 TGACCACTGATAACCTGCATACA 59.482 43.478 0.00 0.00 0.00 2.29
2526 2646 0.916358 AGGAATGCAGGCTGTAGGGT 60.916 55.000 17.16 0.88 0.00 4.34
2552 2672 6.640499 TGAATTCAACTTAGTTGCCAAATTCG 59.360 34.615 26.84 6.61 41.61 3.34
2561 2681 9.333497 CACACATACATGAATTCAACTTAGTTG 57.667 33.333 18.12 18.12 43.99 3.16
2584 2704 6.043854 TGTTGTGATATAACTAGTGGCACA 57.956 37.500 21.41 4.42 33.50 4.57
2626 2746 3.076621 CCTGTAAACAAGCATCTGAGCA 58.923 45.455 0.00 0.00 36.85 4.26
2752 2872 5.635280 TCTGTTTCTCATGAGAATTCGTCAC 59.365 40.000 33.02 26.42 45.78 3.67
2996 3117 5.909621 ACCCAATTGTCAGAAGATCAATG 57.090 39.130 4.43 0.00 33.04 2.82
3013 3134 3.201266 GGTCCCATATCTACACAACCCAA 59.799 47.826 0.00 0.00 0.00 4.12
3402 3523 1.262417 TGGACTCGATGTTACTGCCA 58.738 50.000 0.00 0.00 0.00 4.92
3542 3663 4.691860 AGTGTGATAACATGCAAAGCTC 57.308 40.909 0.00 0.00 0.00 4.09
3557 3678 7.616542 TCATAGTGGGTAGTAACATAAGTGTGA 59.383 37.037 0.00 0.00 38.92 3.58
3635 3757 4.506654 GCGAGTTAATGTATCGACAATGGT 59.493 41.667 0.00 0.00 39.59 3.55
3645 3782 4.650754 AACGAGGAGCGAGTTAATGTAT 57.349 40.909 0.00 0.00 44.57 2.29
3657 3794 1.865340 ACGAAACAAGAAACGAGGAGC 59.135 47.619 0.00 0.00 0.00 4.70
3706 3844 6.521133 GTCTCAAGTCATTTAAAGAATGCACG 59.479 38.462 0.00 0.00 0.00 5.34
3713 3851 9.052759 GTTTGGTAGTCTCAAGTCATTTAAAGA 57.947 33.333 0.00 0.00 0.00 2.52
3718 3856 6.998074 TCATGTTTGGTAGTCTCAAGTCATTT 59.002 34.615 0.00 0.00 0.00 2.32
3805 3944 1.074951 CAAGGCGGAGGGGAAAACT 59.925 57.895 0.00 0.00 0.00 2.66
4083 4222 6.147164 GCAAGAACAACTTAGTGCATAGTGTA 59.853 38.462 0.00 0.00 37.03 2.90
4254 4393 7.714377 CACCATTAGATGAAGAGTATTGAAGCT 59.286 37.037 0.00 0.00 0.00 3.74
4366 4508 8.921670 GTCCAAATAATAACATGGTGAACAAAC 58.078 33.333 0.00 0.00 34.50 2.93
4432 4574 7.179076 AGGTAATTAACAGTAGGTACCACAG 57.821 40.000 15.94 9.66 34.65 3.66
4966 5115 4.470462 GAATCTGAGTTGCATTGACACAC 58.530 43.478 0.00 0.00 0.00 3.82
5120 5278 4.685924 AGAAAAACACCAGCAAACTCATG 58.314 39.130 0.00 0.00 0.00 3.07
5125 5283 6.902224 ACAATAAGAAAAACACCAGCAAAC 57.098 33.333 0.00 0.00 0.00 2.93
5155 5313 5.248020 AGGTAGATCTAGGGCATCAGAATTG 59.752 44.000 1.64 0.00 0.00 2.32
5473 5735 7.550906 GTGCATAGTGGAATCTCTAAAAAGACT 59.449 37.037 0.00 0.00 0.00 3.24
5476 5738 7.856145 AGTGCATAGTGGAATCTCTAAAAAG 57.144 36.000 0.00 0.00 0.00 2.27
5497 5759 4.870426 ACTCATTTTGCTCCGTATGTAGTG 59.130 41.667 0.00 0.00 0.00 2.74
5555 5817 9.582431 TTAGAGATTGCACTACAAACTACATAC 57.418 33.333 0.00 0.00 41.09 2.39
5601 5863 4.202461 GGACAATGCAATATACTCCCTCCA 60.202 45.833 0.00 0.00 0.00 3.86
5664 5926 8.786898 CAATATGTTGGACTGAGAAAAAGAAGA 58.213 33.333 0.00 0.00 0.00 2.87
5665 5927 8.786898 TCAATATGTTGGACTGAGAAAAAGAAG 58.213 33.333 2.06 0.00 35.99 2.85
5673 5935 6.611236 TCCACTATCAATATGTTGGACTGAGA 59.389 38.462 2.06 0.00 35.99 3.27
5756 6018 4.098349 TCCTCATTAACAGCCATTGCATTC 59.902 41.667 0.00 0.00 41.13 2.67
6135 6400 3.885297 ACCAATGTGGAATGCATAGTAGC 59.115 43.478 0.00 0.00 40.96 3.58
6142 6407 2.296752 CTGTCAACCAATGTGGAATGCA 59.703 45.455 0.18 0.00 40.96 3.96
6150 6415 2.592102 ATCAGCCTGTCAACCAATGT 57.408 45.000 0.00 0.00 0.00 2.71
6167 6432 2.292845 CCGAACGGAGGGAGTACTTATC 59.707 54.545 7.53 0.00 37.50 1.75
6169 6434 1.281867 TCCGAACGGAGGGAGTACTTA 59.718 52.381 12.04 0.00 39.76 2.24
6175 6440 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
6177 6442 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
6178 6443 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
6179 6444 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
6182 6447 2.981805 TCACGACAAGTAATTCCGAACG 59.018 45.455 0.00 0.00 0.00 3.95
6183 6448 4.977741 TTCACGACAAGTAATTCCGAAC 57.022 40.909 0.00 0.00 0.00 3.95
6185 6450 4.446385 CACTTTCACGACAAGTAATTCCGA 59.554 41.667 0.00 0.00 32.48 4.55
6186 6451 4.377022 CCACTTTCACGACAAGTAATTCCG 60.377 45.833 0.00 0.00 32.48 4.30
6188 6453 5.917541 TCCACTTTCACGACAAGTAATTC 57.082 39.130 0.00 0.00 32.48 2.17
6189 6454 5.763204 ACATCCACTTTCACGACAAGTAATT 59.237 36.000 0.00 0.00 32.48 1.40
6193 6458 3.194005 ACATCCACTTTCACGACAAGT 57.806 42.857 0.00 0.00 34.67 3.16
6195 6460 5.147330 AGATACATCCACTTTCACGACAA 57.853 39.130 0.00 0.00 0.00 3.18
6196 6461 4.801330 AGATACATCCACTTTCACGACA 57.199 40.909 0.00 0.00 0.00 4.35
6197 6462 6.132791 TCTAGATACATCCACTTTCACGAC 57.867 41.667 0.00 0.00 0.00 4.34
6198 6463 6.321435 ACATCTAGATACATCCACTTTCACGA 59.679 38.462 4.54 0.00 0.00 4.35
6199 6464 6.507900 ACATCTAGATACATCCACTTTCACG 58.492 40.000 4.54 0.00 0.00 4.35
6200 6465 9.988815 AATACATCTAGATACATCCACTTTCAC 57.011 33.333 4.54 0.00 0.00 3.18
6225 6490 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
6226 6491 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
6227 6492 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
6228 6493 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
6229 6494 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
6230 6495 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
6231 6496 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
6232 6497 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
6233 6498 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
6234 6499 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
6235 6500 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
6236 6501 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
6237 6502 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
6238 6503 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
6239 6504 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
6240 6505 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
6241 6506 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
6242 6507 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
6243 6508 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
6244 6509 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
6245 6510 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
6246 6511 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
6247 6512 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
6248 6513 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
6249 6514 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
6250 6515 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
6251 6516 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
6252 6517 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
6253 6518 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
6254 6519 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
6255 6520 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
6256 6521 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
6257 6522 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
6258 6523 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
6259 6524 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
6260 6525 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
6261 6526 1.687123 CATACTCCCTCCGTTCGGAAT 59.313 52.381 14.79 2.14 33.41 3.01
6262 6527 1.108776 CATACTCCCTCCGTTCGGAA 58.891 55.000 14.79 0.00 33.41 4.30
6263 6528 0.256752 TCATACTCCCTCCGTTCGGA 59.743 55.000 13.34 13.34 0.00 4.55
6264 6529 0.669077 CTCATACTCCCTCCGTTCGG 59.331 60.000 4.74 4.74 0.00 4.30
6265 6530 1.065701 CACTCATACTCCCTCCGTTCG 59.934 57.143 0.00 0.00 0.00 3.95
6266 6531 2.376109 TCACTCATACTCCCTCCGTTC 58.624 52.381 0.00 0.00 0.00 3.95
6267 6532 2.526888 TCACTCATACTCCCTCCGTT 57.473 50.000 0.00 0.00 0.00 4.44
6268 6533 2.526888 TTCACTCATACTCCCTCCGT 57.473 50.000 0.00 0.00 0.00 4.69
6269 6534 5.243954 TGAATATTCACTCATACTCCCTCCG 59.756 44.000 14.23 0.00 31.01 4.63
6270 6535 6.672266 TGAATATTCACTCATACTCCCTCC 57.328 41.667 14.23 0.00 31.01 4.30
6271 6536 6.014669 AGCTGAATATTCACTCATACTCCCTC 60.015 42.308 14.23 0.00 32.90 4.30
6272 6537 5.843421 AGCTGAATATTCACTCATACTCCCT 59.157 40.000 14.23 0.00 32.90 4.20
6273 6538 6.107901 AGCTGAATATTCACTCATACTCCC 57.892 41.667 14.23 0.00 32.90 4.30
6274 6539 6.073331 GCAAGCTGAATATTCACTCATACTCC 60.073 42.308 14.23 0.00 32.90 3.85
6275 6540 6.073331 GGCAAGCTGAATATTCACTCATACTC 60.073 42.308 14.23 0.12 32.90 2.59
6276 6541 5.762218 GGCAAGCTGAATATTCACTCATACT 59.238 40.000 14.23 2.97 32.90 2.12
6277 6542 5.762218 AGGCAAGCTGAATATTCACTCATAC 59.238 40.000 14.23 4.53 32.90 2.39
6278 6543 5.933617 AGGCAAGCTGAATATTCACTCATA 58.066 37.500 14.23 0.00 32.90 2.15
6279 6544 4.789807 AGGCAAGCTGAATATTCACTCAT 58.210 39.130 14.23 0.11 32.90 2.90
6280 6545 4.226427 AGGCAAGCTGAATATTCACTCA 57.774 40.909 14.23 0.00 32.90 3.41
6281 6546 5.573337 AAAGGCAAGCTGAATATTCACTC 57.427 39.130 14.23 9.06 32.90 3.51
6282 6547 5.392380 CGAAAAGGCAAGCTGAATATTCACT 60.392 40.000 14.23 12.99 32.90 3.41
6283 6548 4.795278 CGAAAAGGCAAGCTGAATATTCAC 59.205 41.667 14.23 11.09 32.90 3.18
6284 6549 4.699735 TCGAAAAGGCAAGCTGAATATTCA 59.300 37.500 17.07 17.07 35.57 2.57
6285 6550 5.235305 TCGAAAAGGCAAGCTGAATATTC 57.765 39.130 8.60 8.60 0.00 1.75
6286 6551 5.841957 ATCGAAAAGGCAAGCTGAATATT 57.158 34.783 0.00 0.00 0.00 1.28
6287 6552 5.841957 AATCGAAAAGGCAAGCTGAATAT 57.158 34.783 0.00 0.00 0.00 1.28
6288 6553 5.643379 AAATCGAAAAGGCAAGCTGAATA 57.357 34.783 0.00 0.00 0.00 1.75
6289 6554 4.525912 AAATCGAAAAGGCAAGCTGAAT 57.474 36.364 0.00 0.00 0.00 2.57
6290 6555 4.050553 CAAAATCGAAAAGGCAAGCTGAA 58.949 39.130 0.00 0.00 0.00 3.02
6291 6556 3.317711 TCAAAATCGAAAAGGCAAGCTGA 59.682 39.130 0.00 0.00 0.00 4.26
6292 6557 3.426525 GTCAAAATCGAAAAGGCAAGCTG 59.573 43.478 0.00 0.00 0.00 4.24
6293 6558 3.642705 GTCAAAATCGAAAAGGCAAGCT 58.357 40.909 0.00 0.00 0.00 3.74
6294 6559 2.405025 CGTCAAAATCGAAAAGGCAAGC 59.595 45.455 0.00 0.00 0.00 4.01
6295 6560 3.884169 TCGTCAAAATCGAAAAGGCAAG 58.116 40.909 0.00 0.00 34.36 4.01
6296 6561 3.972950 TCGTCAAAATCGAAAAGGCAA 57.027 38.095 0.00 0.00 34.36 4.52
6297 6562 3.314080 ACTTCGTCAAAATCGAAAAGGCA 59.686 39.130 0.00 0.00 44.58 4.75
6298 6563 3.885358 ACTTCGTCAAAATCGAAAAGGC 58.115 40.909 0.00 0.00 44.58 4.35
6299 6564 6.806120 AAAACTTCGTCAAAATCGAAAAGG 57.194 33.333 0.00 0.00 44.58 3.11
6300 6565 7.220108 AGGAAAAACTTCGTCAAAATCGAAAAG 59.780 33.333 0.00 0.00 44.58 2.27
6301 6566 7.030768 AGGAAAAACTTCGTCAAAATCGAAAA 58.969 30.769 0.00 0.00 44.58 2.29
6302 6567 6.557110 AGGAAAAACTTCGTCAAAATCGAAA 58.443 32.000 0.00 0.00 44.58 3.46
6303 6568 6.037830 AGAGGAAAAACTTCGTCAAAATCGAA 59.962 34.615 9.47 0.00 43.41 3.71
6304 6569 5.526111 AGAGGAAAAACTTCGTCAAAATCGA 59.474 36.000 9.47 0.00 38.06 3.59
6305 6570 5.748592 AGAGGAAAAACTTCGTCAAAATCG 58.251 37.500 9.47 0.00 38.06 3.34
6306 6571 6.972901 ACAAGAGGAAAAACTTCGTCAAAATC 59.027 34.615 9.47 0.00 38.06 2.17
6307 6572 6.751888 CACAAGAGGAAAAACTTCGTCAAAAT 59.248 34.615 9.47 0.00 38.06 1.82
6330 6595 3.134804 ACATTACTATCAGCACCCCTCAC 59.865 47.826 0.00 0.00 0.00 3.51
6339 6604 8.545229 AGCATTTCTGATACATTACTATCAGC 57.455 34.615 10.21 1.85 45.39 4.26
6384 6650 3.679389 ACAAACATCAAGGCTAGACCAG 58.321 45.455 0.00 0.00 43.14 4.00
6385 6651 3.788227 ACAAACATCAAGGCTAGACCA 57.212 42.857 0.00 0.00 43.14 4.02
6386 6652 5.472137 TGTAAACAAACATCAAGGCTAGACC 59.528 40.000 0.00 0.00 39.61 3.85
6442 6708 9.352191 CTCTCCAATGATCCTGAAATTTAAGAT 57.648 33.333 3.89 0.77 0.00 2.40
6447 6713 6.487828 TCACTCTCCAATGATCCTGAAATTT 58.512 36.000 0.00 0.00 0.00 1.82
6661 6927 2.231716 ACCAAGGGTAGAATTTGGGC 57.768 50.000 7.33 0.00 44.41 5.36
6691 6958 1.463056 CGCCATAAACGCTCAACAAGA 59.537 47.619 0.00 0.00 0.00 3.02
6694 6961 1.917782 GCCGCCATAAACGCTCAACA 61.918 55.000 0.00 0.00 0.00 3.33
6702 6969 0.796870 GCTTGAACGCCGCCATAAAC 60.797 55.000 0.00 0.00 0.00 2.01
6713 6980 1.810030 GGACGCTAGGGCTTGAACG 60.810 63.158 6.73 0.00 36.09 3.95
6726 6993 4.940463 TCTGTATTATACAACAGGGACGC 58.060 43.478 6.52 0.00 42.72 5.19
6750 7017 7.102993 TCAGCAATAAATACTAGCACAAGACA 58.897 34.615 0.00 0.00 0.00 3.41
6753 7020 9.793252 AAATTCAGCAATAAATACTAGCACAAG 57.207 29.630 0.00 0.00 0.00 3.16
6754 7021 9.571810 CAAATTCAGCAATAAATACTAGCACAA 57.428 29.630 0.00 0.00 0.00 3.33
6755 7022 8.190122 CCAAATTCAGCAATAAATACTAGCACA 58.810 33.333 0.00 0.00 0.00 4.57
6758 7025 8.078596 CCTCCAAATTCAGCAATAAATACTAGC 58.921 37.037 0.00 0.00 0.00 3.42
6778 7045 5.118729 TCAAACTAGAAAACACCCTCCAA 57.881 39.130 0.00 0.00 0.00 3.53
6798 7065 9.695526 GCCAATGCATAGAACAAAATATATTCA 57.304 29.630 0.00 0.00 37.47 2.57
6799 7066 9.695526 TGCCAATGCATAGAACAAAATATATTC 57.304 29.630 0.00 0.00 44.23 1.75
6836 7105 7.591006 ACAGCTGCAGAAATTTAATTTGATG 57.409 32.000 20.43 7.57 31.47 3.07
6845 7115 3.254166 CACCACTACAGCTGCAGAAATTT 59.746 43.478 21.00 0.00 0.00 1.82
6869 7139 3.757493 AGAGAACCCGTAGTGACTTACAG 59.243 47.826 0.00 0.00 0.00 2.74
6883 7153 2.613691 TCGCGATTTTACAGAGAACCC 58.386 47.619 3.71 0.00 0.00 4.11
6896 7166 4.751600 TGAATCATTAGCAAGATCGCGATT 59.248 37.500 24.55 9.40 36.85 3.34
6915 7185 6.978338 TCGTACTGTTCAACTTAGTCTGAAT 58.022 36.000 11.10 0.00 34.26 2.57
6921 7191 8.205131 ACAAAATTCGTACTGTTCAACTTAGT 57.795 30.769 0.00 0.00 0.00 2.24
6925 7195 6.685403 CGAAACAAAATTCGTACTGTTCAACT 59.315 34.615 1.54 0.00 45.32 3.16
6980 7250 6.438425 AGGAATGCATCATCCAAGTTAAGTTT 59.562 34.615 17.74 0.00 0.00 2.66
6981 7251 5.954150 AGGAATGCATCATCCAAGTTAAGTT 59.046 36.000 17.74 0.00 0.00 2.66
6982 7252 5.513233 AGGAATGCATCATCCAAGTTAAGT 58.487 37.500 17.74 0.00 0.00 2.24
7005 7278 1.148310 GCAGTAGACGCTTTCAGCAA 58.852 50.000 0.00 0.00 42.58 3.91
7016 7289 4.735822 CGAATAAGTACAGCAGCAGTAGAC 59.264 45.833 0.00 0.00 0.00 2.59
7017 7290 4.733815 GCGAATAAGTACAGCAGCAGTAGA 60.734 45.833 0.00 0.00 0.00 2.59
7018 7291 3.487574 GCGAATAAGTACAGCAGCAGTAG 59.512 47.826 0.00 0.00 0.00 2.57
7020 7293 2.271800 GCGAATAAGTACAGCAGCAGT 58.728 47.619 0.00 0.00 0.00 4.40
7021 7294 2.270923 TGCGAATAAGTACAGCAGCAG 58.729 47.619 0.00 0.00 33.57 4.24
7022 7295 2.378445 TGCGAATAAGTACAGCAGCA 57.622 45.000 0.00 0.00 33.57 4.41
7023 7296 2.534939 CGTTGCGAATAAGTACAGCAGC 60.535 50.000 0.00 0.00 39.11 5.25
7024 7297 2.921121 TCGTTGCGAATAAGTACAGCAG 59.079 45.455 0.00 0.00 39.11 4.24
7025 7298 2.921121 CTCGTTGCGAATAAGTACAGCA 59.079 45.455 0.00 0.00 34.74 4.41
7026 7299 2.921754 ACTCGTTGCGAATAAGTACAGC 59.078 45.455 0.00 0.00 34.74 4.40
7027 7300 4.201589 CCAACTCGTTGCGAATAAGTACAG 60.202 45.833 4.30 0.00 39.16 2.74
7028 7301 3.676172 CCAACTCGTTGCGAATAAGTACA 59.324 43.478 4.30 0.00 39.16 2.90
7029 7302 3.922240 TCCAACTCGTTGCGAATAAGTAC 59.078 43.478 4.30 0.00 39.16 2.73
7031 7304 3.034721 TCCAACTCGTTGCGAATAAGT 57.965 42.857 4.30 0.00 39.16 2.24
7032 7305 4.600012 ATTCCAACTCGTTGCGAATAAG 57.400 40.909 17.23 1.31 38.00 1.73
7041 7319 8.771920 AAAGAAAAAGAAAATTCCAACTCGTT 57.228 26.923 0.00 0.00 0.00 3.85
7043 7321 8.634475 AGAAAGAAAAAGAAAATTCCAACTCG 57.366 30.769 0.00 0.00 0.00 4.18
7052 7330 9.605275 AGCAGCTAAAAGAAAGAAAAAGAAAAT 57.395 25.926 0.00 0.00 0.00 1.82
7054 7332 7.010460 GCAGCAGCTAAAAGAAAGAAAAAGAAA 59.990 33.333 0.00 0.00 37.91 2.52
7057 7335 5.108103 CGCAGCAGCTAAAAGAAAGAAAAAG 60.108 40.000 0.00 0.00 39.10 2.27
7060 7338 3.304659 CCGCAGCAGCTAAAAGAAAGAAA 60.305 43.478 0.00 0.00 39.10 2.52
7063 7341 1.806542 TCCGCAGCAGCTAAAAGAAAG 59.193 47.619 0.00 0.00 39.10 2.62
7081 7365 4.382754 CAGCTTCAATTAAACAACGCTTCC 59.617 41.667 0.00 0.00 0.00 3.46
7098 7382 0.868406 CAACGGACCTTGTCAGCTTC 59.132 55.000 0.00 0.00 33.68 3.86
7160 7444 2.225467 GGGATGAGCTTACCATTCTGC 58.775 52.381 0.00 0.00 0.00 4.26
7161 7445 2.441001 AGGGGATGAGCTTACCATTCTG 59.559 50.000 0.00 0.00 0.00 3.02
7162 7446 2.441001 CAGGGGATGAGCTTACCATTCT 59.559 50.000 0.00 0.00 0.00 2.40
7163 7447 2.856222 CAGGGGATGAGCTTACCATTC 58.144 52.381 0.00 0.00 0.00 2.67
7164 7448 1.133668 GCAGGGGATGAGCTTACCATT 60.134 52.381 0.00 0.00 0.00 3.16
7165 7449 0.475906 GCAGGGGATGAGCTTACCAT 59.524 55.000 0.00 0.00 0.00 3.55
7166 7450 0.621571 AGCAGGGGATGAGCTTACCA 60.622 55.000 0.00 0.00 34.37 3.25
7167 7451 1.346068 CTAGCAGGGGATGAGCTTACC 59.654 57.143 0.00 0.00 39.68 2.85
7168 7452 1.346068 CCTAGCAGGGGATGAGCTTAC 59.654 57.143 0.00 0.00 39.68 2.34
7169 7453 1.220493 TCCTAGCAGGGGATGAGCTTA 59.780 52.381 0.00 0.00 39.68 3.09
7170 7454 0.030705 TCCTAGCAGGGGATGAGCTT 60.031 55.000 0.00 0.00 39.68 3.74
7171 7455 0.471591 CTCCTAGCAGGGGATGAGCT 60.472 60.000 0.00 0.00 38.47 4.09
7172 7456 2.056985 CTCCTAGCAGGGGATGAGC 58.943 63.158 0.00 0.00 38.47 4.26
7173 7457 2.056985 GCTCCTAGCAGGGGATGAG 58.943 63.158 6.28 0.00 38.47 2.90
7174 7458 4.302622 GCTCCTAGCAGGGGATGA 57.697 61.111 6.28 0.00 38.47 2.92
7183 7467 2.028130 TCTGCTAGAGTTGCTCCTAGC 58.972 52.381 12.85 12.85 43.45 3.42
7184 7468 2.360801 GGTCTGCTAGAGTTGCTCCTAG 59.639 54.545 0.00 0.00 0.00 3.02
7185 7469 2.379972 GGTCTGCTAGAGTTGCTCCTA 58.620 52.381 0.00 0.00 0.00 2.94
7186 7470 1.190643 GGTCTGCTAGAGTTGCTCCT 58.809 55.000 0.00 0.00 0.00 3.69
7187 7471 0.176910 GGGTCTGCTAGAGTTGCTCC 59.823 60.000 0.00 0.00 0.00 4.70
7188 7472 1.134848 CAGGGTCTGCTAGAGTTGCTC 60.135 57.143 0.00 0.00 0.00 4.26
7189 7473 0.901124 CAGGGTCTGCTAGAGTTGCT 59.099 55.000 0.00 0.00 0.00 3.91
7190 7474 3.450028 CAGGGTCTGCTAGAGTTGC 57.550 57.895 0.00 0.00 0.00 4.17
7210 7494 3.988050 TTACGGGTCAGGGCGGGAT 62.988 63.158 0.00 0.00 0.00 3.85
7211 7495 4.700448 TTACGGGTCAGGGCGGGA 62.700 66.667 0.00 0.00 0.00 5.14
7212 7496 2.546114 ATTTTACGGGTCAGGGCGGG 62.546 60.000 0.00 0.00 0.00 6.13
7213 7497 0.178533 TATTTTACGGGTCAGGGCGG 59.821 55.000 0.00 0.00 0.00 6.13
7214 7498 1.667212 GTTATTTTACGGGTCAGGGCG 59.333 52.381 0.00 0.00 0.00 6.13
7215 7499 2.019249 GGTTATTTTACGGGTCAGGGC 58.981 52.381 0.00 0.00 0.00 5.19
7216 7500 2.282407 CGGTTATTTTACGGGTCAGGG 58.718 52.381 0.00 0.00 0.00 4.45
7217 7501 2.931969 GACGGTTATTTTACGGGTCAGG 59.068 50.000 0.00 0.00 0.00 3.86
7218 7502 3.587923 TGACGGTTATTTTACGGGTCAG 58.412 45.455 0.00 0.00 32.21 3.51
7219 7503 3.674528 TGACGGTTATTTTACGGGTCA 57.325 42.857 0.00 0.00 32.97 4.02
7220 7504 5.355467 TTTTGACGGTTATTTTACGGGTC 57.645 39.130 0.00 0.00 0.00 4.46
7221 7505 5.241285 ACATTTTGACGGTTATTTTACGGGT 59.759 36.000 0.00 0.00 0.00 5.28
7222 7506 5.569823 CACATTTTGACGGTTATTTTACGGG 59.430 40.000 0.00 0.00 0.00 5.28
7223 7507 5.569823 CCACATTTTGACGGTTATTTTACGG 59.430 40.000 0.00 0.00 0.00 4.02
7224 7508 5.569823 CCCACATTTTGACGGTTATTTTACG 59.430 40.000 0.00 0.00 0.00 3.18
7225 7509 6.448852 ACCCACATTTTGACGGTTATTTTAC 58.551 36.000 0.00 0.00 0.00 2.01
7226 7510 6.568081 CGACCCACATTTTGACGGTTATTTTA 60.568 38.462 0.00 0.00 0.00 1.52
7227 7511 5.534407 GACCCACATTTTGACGGTTATTTT 58.466 37.500 0.00 0.00 0.00 1.82
7228 7512 4.320641 CGACCCACATTTTGACGGTTATTT 60.321 41.667 0.00 0.00 0.00 1.40
7229 7513 3.189702 CGACCCACATTTTGACGGTTATT 59.810 43.478 0.00 0.00 0.00 1.40
7230 7514 2.745281 CGACCCACATTTTGACGGTTAT 59.255 45.455 0.00 0.00 0.00 1.89
7231 7515 2.144730 CGACCCACATTTTGACGGTTA 58.855 47.619 0.00 0.00 0.00 2.85
7232 7516 0.948678 CGACCCACATTTTGACGGTT 59.051 50.000 0.00 0.00 0.00 4.44
7233 7517 0.887387 CCGACCCACATTTTGACGGT 60.887 55.000 0.00 0.00 34.15 4.83
7234 7518 1.582610 CCCGACCCACATTTTGACGG 61.583 60.000 0.00 0.00 36.60 4.79
7235 7519 1.582610 CCCCGACCCACATTTTGACG 61.583 60.000 0.00 0.00 0.00 4.35
7236 7520 1.873270 GCCCCGACCCACATTTTGAC 61.873 60.000 0.00 0.00 0.00 3.18
7237 7521 1.605165 GCCCCGACCCACATTTTGA 60.605 57.895 0.00 0.00 0.00 2.69
7238 7522 2.969827 GCCCCGACCCACATTTTG 59.030 61.111 0.00 0.00 0.00 2.44
7239 7523 2.675075 CGCCCCGACCCACATTTT 60.675 61.111 0.00 0.00 0.00 1.82
7240 7524 4.733542 CCGCCCCGACCCACATTT 62.734 66.667 0.00 0.00 0.00 2.32
7244 7528 4.646877 TTTTCCGCCCCGACCCAC 62.647 66.667 0.00 0.00 0.00 4.61
7245 7529 3.887230 TTTTTCCGCCCCGACCCA 61.887 61.111 0.00 0.00 0.00 4.51
7246 7530 3.367743 GTTTTTCCGCCCCGACCC 61.368 66.667 0.00 0.00 0.00 4.46
7247 7531 3.367743 GGTTTTTCCGCCCCGACC 61.368 66.667 0.00 0.00 0.00 4.79
7248 7532 2.595172 TGGTTTTTCCGCCCCGAC 60.595 61.111 0.00 0.00 39.52 4.79
7249 7533 2.281900 CTGGTTTTTCCGCCCCGA 60.282 61.111 0.00 0.00 39.52 5.14
7250 7534 4.050934 GCTGGTTTTTCCGCCCCG 62.051 66.667 0.00 0.00 39.52 5.73
7251 7535 2.600470 AGCTGGTTTTTCCGCCCC 60.600 61.111 0.00 0.00 39.52 5.80
7252 7536 2.962569 GAGCTGGTTTTTCCGCCC 59.037 61.111 0.00 0.00 39.52 6.13
7253 7537 1.305930 ATCGAGCTGGTTTTTCCGCC 61.306 55.000 0.00 0.00 39.52 6.13
7254 7538 1.365699 TATCGAGCTGGTTTTTCCGC 58.634 50.000 0.00 0.00 39.52 5.54
7255 7539 3.062234 GTCTTATCGAGCTGGTTTTTCCG 59.938 47.826 0.00 0.00 39.52 4.30
7256 7540 3.374367 GGTCTTATCGAGCTGGTTTTTCC 59.626 47.826 0.00 0.00 37.18 3.13
7257 7541 3.374367 GGGTCTTATCGAGCTGGTTTTTC 59.626 47.826 0.00 0.00 40.01 2.29
7258 7542 3.344515 GGGTCTTATCGAGCTGGTTTTT 58.655 45.455 0.00 0.00 40.01 1.94
7259 7543 2.355818 GGGGTCTTATCGAGCTGGTTTT 60.356 50.000 0.00 0.00 40.01 2.43
7260 7544 1.209747 GGGGTCTTATCGAGCTGGTTT 59.790 52.381 0.00 0.00 40.01 3.27
7261 7545 0.831307 GGGGTCTTATCGAGCTGGTT 59.169 55.000 0.00 0.00 40.01 3.67
7262 7546 1.392710 CGGGGTCTTATCGAGCTGGT 61.393 60.000 0.00 0.00 40.01 4.00
7263 7547 1.364171 CGGGGTCTTATCGAGCTGG 59.636 63.158 0.00 0.00 40.01 4.85
7264 7548 1.300233 GCGGGGTCTTATCGAGCTG 60.300 63.158 0.00 0.00 40.01 4.24
7265 7549 1.115930 ATGCGGGGTCTTATCGAGCT 61.116 55.000 0.00 0.00 40.01 4.09
7266 7550 0.667792 GATGCGGGGTCTTATCGAGC 60.668 60.000 0.00 0.00 39.41 5.03
7267 7551 0.038159 GGATGCGGGGTCTTATCGAG 60.038 60.000 0.00 0.00 0.00 4.04
7268 7552 1.469335 GGGATGCGGGGTCTTATCGA 61.469 60.000 0.00 0.00 0.00 3.59
7269 7553 1.004918 GGGATGCGGGGTCTTATCG 60.005 63.158 0.00 0.00 0.00 2.92
7270 7554 1.004918 CGGGATGCGGGGTCTTATC 60.005 63.158 0.00 0.00 0.00 1.75
7271 7555 2.516888 CCGGGATGCGGGGTCTTAT 61.517 63.158 2.56 0.00 0.00 1.73
7272 7556 3.158648 CCGGGATGCGGGGTCTTA 61.159 66.667 2.56 0.00 0.00 2.10
7282 7566 3.377759 TTTTTGCGGGCCGGGATG 61.378 61.111 29.48 0.00 0.00 3.51
7297 7581 1.894512 CCGCGCCCCCTAAATTTTT 59.105 52.632 0.00 0.00 0.00 1.94
7298 7582 2.717044 GCCGCGCCCCCTAAATTTT 61.717 57.895 0.00 0.00 0.00 1.82
7299 7583 3.144871 GCCGCGCCCCCTAAATTT 61.145 61.111 0.00 0.00 0.00 1.82
7300 7584 3.948004 TTGCCGCGCCCCCTAAATT 62.948 57.895 0.00 0.00 0.00 1.82
7301 7585 3.948004 TTTGCCGCGCCCCCTAAAT 62.948 57.895 0.00 0.00 0.00 1.40
7302 7586 4.662707 TTTGCCGCGCCCCCTAAA 62.663 61.111 0.00 0.00 0.00 1.85
7303 7587 3.948004 ATTTTGCCGCGCCCCCTAA 62.948 57.895 0.00 0.00 0.00 2.69
7304 7588 4.434354 ATTTTGCCGCGCCCCCTA 62.434 61.111 0.00 0.00 0.00 3.53
7309 7593 4.062656 TTGGGATTTTGCCGCGCC 62.063 61.111 0.00 0.00 0.00 6.53
7310 7594 2.809174 GTTGGGATTTTGCCGCGC 60.809 61.111 0.00 0.00 0.00 6.86
7311 7595 1.154035 GAGTTGGGATTTTGCCGCG 60.154 57.895 0.00 0.00 0.00 6.46
7312 7596 1.215382 GGAGTTGGGATTTTGCCGC 59.785 57.895 0.00 0.00 0.00 6.53
7313 7597 0.965439 TTGGAGTTGGGATTTTGCCG 59.035 50.000 0.00 0.00 0.00 5.69
7314 7598 1.001974 GGTTGGAGTTGGGATTTTGCC 59.998 52.381 0.00 0.00 0.00 4.52
7315 7599 1.001974 GGGTTGGAGTTGGGATTTTGC 59.998 52.381 0.00 0.00 0.00 3.68
7316 7600 1.272212 CGGGTTGGAGTTGGGATTTTG 59.728 52.381 0.00 0.00 0.00 2.44
7317 7601 1.627864 CGGGTTGGAGTTGGGATTTT 58.372 50.000 0.00 0.00 0.00 1.82
7318 7602 0.251608 CCGGGTTGGAGTTGGGATTT 60.252 55.000 0.00 0.00 42.00 2.17
7319 7603 1.382629 CCGGGTTGGAGTTGGGATT 59.617 57.895 0.00 0.00 42.00 3.01
7320 7604 2.612493 CCCGGGTTGGAGTTGGGAT 61.612 63.158 14.18 0.00 42.77 3.85
7321 7605 3.253838 CCCGGGTTGGAGTTGGGA 61.254 66.667 14.18 0.00 42.77 4.37
7322 7606 2.360439 TTTCCCGGGTTGGAGTTGGG 62.360 60.000 22.86 0.00 42.00 4.12
7323 7607 0.468400 TTTTCCCGGGTTGGAGTTGG 60.468 55.000 22.86 0.00 42.00 3.77
7324 7608 0.671796 GTTTTCCCGGGTTGGAGTTG 59.328 55.000 22.86 0.00 42.00 3.16
7325 7609 0.259356 TGTTTTCCCGGGTTGGAGTT 59.741 50.000 22.86 0.00 42.00 3.01
7326 7610 0.466739 GTGTTTTCCCGGGTTGGAGT 60.467 55.000 22.86 0.00 42.00 3.85
7327 7611 1.512156 CGTGTTTTCCCGGGTTGGAG 61.512 60.000 22.86 3.51 42.00 3.86
7328 7612 1.526455 CGTGTTTTCCCGGGTTGGA 60.526 57.895 22.86 0.00 42.00 3.53
7329 7613 2.557372 CCGTGTTTTCCCGGGTTGG 61.557 63.158 22.86 9.05 40.54 3.77
7330 7614 3.035727 CCGTGTTTTCCCGGGTTG 58.964 61.111 22.86 3.42 40.54 3.77
7334 7618 1.655885 GAAACCCGTGTTTTCCCGG 59.344 57.895 0.00 0.00 44.57 5.73
7335 7619 1.655885 GGAAACCCGTGTTTTCCCG 59.344 57.895 0.00 0.00 44.57 5.14
7368 7652 2.709475 CGCTAATTCGCAGGGCAC 59.291 61.111 2.63 0.00 0.00 5.01
7369 7653 2.513666 CCGCTAATTCGCAGGGCA 60.514 61.111 2.63 0.00 0.00 5.36
7370 7654 1.776034 CTTCCGCTAATTCGCAGGGC 61.776 60.000 2.63 0.00 0.00 5.19
7371 7655 1.776034 GCTTCCGCTAATTCGCAGGG 61.776 60.000 2.63 0.00 0.00 4.45
7372 7656 1.643832 GCTTCCGCTAATTCGCAGG 59.356 57.895 2.63 4.89 0.00 4.85
7373 7657 1.273887 CGCTTCCGCTAATTCGCAG 59.726 57.895 2.63 0.00 0.00 5.18
7374 7658 2.171079 CCGCTTCCGCTAATTCGCA 61.171 57.895 2.63 0.00 0.00 5.10
7375 7659 1.702491 AACCGCTTCCGCTAATTCGC 61.702 55.000 0.00 0.00 0.00 4.70
7376 7660 0.026285 CAACCGCTTCCGCTAATTCG 59.974 55.000 0.00 0.00 0.00 3.34
7377 7661 0.377203 CCAACCGCTTCCGCTAATTC 59.623 55.000 0.00 0.00 0.00 2.17
7378 7662 0.322187 ACCAACCGCTTCCGCTAATT 60.322 50.000 0.00 0.00 0.00 1.40
7379 7663 1.024579 CACCAACCGCTTCCGCTAAT 61.025 55.000 0.00 0.00 0.00 1.73
7380 7664 1.669760 CACCAACCGCTTCCGCTAA 60.670 57.895 0.00 0.00 0.00 3.09
7381 7665 2.047655 CACCAACCGCTTCCGCTA 60.048 61.111 0.00 0.00 0.00 4.26
7384 7668 3.353836 CACCACCAACCGCTTCCG 61.354 66.667 0.00 0.00 0.00 4.30
7385 7669 2.983592 CCACCACCAACCGCTTCC 60.984 66.667 0.00 0.00 0.00 3.46
7386 7670 2.983592 CCCACCACCAACCGCTTC 60.984 66.667 0.00 0.00 0.00 3.86
7387 7671 3.494254 TCCCACCACCAACCGCTT 61.494 61.111 0.00 0.00 0.00 4.68
7388 7672 4.265056 GTCCCACCACCAACCGCT 62.265 66.667 0.00 0.00 0.00 5.52
7389 7673 3.860930 ATGTCCCACCACCAACCGC 62.861 63.158 0.00 0.00 0.00 5.68
7390 7674 0.825840 AAATGTCCCACCACCAACCG 60.826 55.000 0.00 0.00 0.00 4.44
7391 7675 1.343142 GAAAATGTCCCACCACCAACC 59.657 52.381 0.00 0.00 0.00 3.77
7392 7676 2.035632 TGAAAATGTCCCACCACCAAC 58.964 47.619 0.00 0.00 0.00 3.77
7393 7677 2.315176 CTGAAAATGTCCCACCACCAA 58.685 47.619 0.00 0.00 0.00 3.67
7394 7678 1.993956 CTGAAAATGTCCCACCACCA 58.006 50.000 0.00 0.00 0.00 4.17
7395 7679 0.603065 GCTGAAAATGTCCCACCACC 59.397 55.000 0.00 0.00 0.00 4.61
7396 7680 1.327303 TGCTGAAAATGTCCCACCAC 58.673 50.000 0.00 0.00 0.00 4.16
7397 7681 1.894466 CATGCTGAAAATGTCCCACCA 59.106 47.619 0.00 0.00 0.00 4.17
7398 7682 1.895131 ACATGCTGAAAATGTCCCACC 59.105 47.619 0.00 0.00 32.83 4.61
7399 7683 3.665745 AACATGCTGAAAATGTCCCAC 57.334 42.857 0.00 0.00 37.27 4.61
7400 7684 3.244146 CCAAACATGCTGAAAATGTCCCA 60.244 43.478 0.00 0.00 37.27 4.37
7401 7685 3.244181 ACCAAACATGCTGAAAATGTCCC 60.244 43.478 0.00 0.00 37.27 4.46
7402 7686 3.993920 ACCAAACATGCTGAAAATGTCC 58.006 40.909 0.00 0.00 37.27 4.02
7403 7687 5.049167 TGAACCAAACATGCTGAAAATGTC 58.951 37.500 0.00 0.00 37.27 3.06
7404 7688 4.810491 GTGAACCAAACATGCTGAAAATGT 59.190 37.500 0.00 0.00 39.95 2.71
7405 7689 4.084952 CGTGAACCAAACATGCTGAAAATG 60.085 41.667 0.00 0.00 0.00 2.32
7406 7690 4.050553 CGTGAACCAAACATGCTGAAAAT 58.949 39.130 0.00 0.00 0.00 1.82
7407 7691 3.119316 ACGTGAACCAAACATGCTGAAAA 60.119 39.130 0.00 0.00 0.00 2.29
7408 7692 2.425312 ACGTGAACCAAACATGCTGAAA 59.575 40.909 0.00 0.00 0.00 2.69
7409 7693 2.020720 ACGTGAACCAAACATGCTGAA 58.979 42.857 0.00 0.00 0.00 3.02
7410 7694 1.601903 GACGTGAACCAAACATGCTGA 59.398 47.619 0.00 0.00 0.00 4.26
7411 7695 1.334960 GGACGTGAACCAAACATGCTG 60.335 52.381 0.00 0.00 0.00 4.41
7412 7696 0.951558 GGACGTGAACCAAACATGCT 59.048 50.000 0.00 0.00 0.00 3.79
7413 7697 0.951558 AGGACGTGAACCAAACATGC 59.048 50.000 0.00 0.00 0.00 4.06
7414 7698 1.266718 CCAGGACGTGAACCAAACATG 59.733 52.381 0.00 0.00 0.00 3.21
7415 7699 1.142060 TCCAGGACGTGAACCAAACAT 59.858 47.619 0.00 0.00 0.00 2.71
7416 7700 0.542333 TCCAGGACGTGAACCAAACA 59.458 50.000 0.00 0.00 0.00 2.83
7417 7701 1.535462 CATCCAGGACGTGAACCAAAC 59.465 52.381 0.00 0.00 0.00 2.93
7418 7702 1.142060 ACATCCAGGACGTGAACCAAA 59.858 47.619 0.00 0.00 0.00 3.28
7419 7703 0.762418 ACATCCAGGACGTGAACCAA 59.238 50.000 0.00 0.00 0.00 3.67
7420 7704 0.762418 AACATCCAGGACGTGAACCA 59.238 50.000 0.00 0.00 0.00 3.67
7421 7705 1.535462 CAAACATCCAGGACGTGAACC 59.465 52.381 0.00 0.00 0.00 3.62
7422 7706 2.489971 TCAAACATCCAGGACGTGAAC 58.510 47.619 0.00 0.00 0.00 3.18
7423 7707 2.920724 TCAAACATCCAGGACGTGAA 57.079 45.000 0.00 0.00 0.00 3.18
7424 7708 2.698803 CATCAAACATCCAGGACGTGA 58.301 47.619 0.00 0.00 0.00 4.35
7425 7709 1.131126 GCATCAAACATCCAGGACGTG 59.869 52.381 0.00 0.00 0.00 4.49
7426 7710 1.453155 GCATCAAACATCCAGGACGT 58.547 50.000 0.00 0.00 0.00 4.34
7427 7711 0.734889 GGCATCAAACATCCAGGACG 59.265 55.000 0.00 0.00 0.00 4.79
7428 7712 1.747355 CAGGCATCAAACATCCAGGAC 59.253 52.381 0.00 0.00 0.00 3.85
7429 7713 1.341285 CCAGGCATCAAACATCCAGGA 60.341 52.381 0.00 0.00 0.00 3.86
7430 7714 1.108776 CCAGGCATCAAACATCCAGG 58.891 55.000 0.00 0.00 0.00 4.45
7431 7715 0.458669 GCCAGGCATCAAACATCCAG 59.541 55.000 6.55 0.00 0.00 3.86
7432 7716 0.971959 GGCCAGGCATCAAACATCCA 60.972 55.000 15.19 0.00 0.00 3.41
7433 7717 0.685458 AGGCCAGGCATCAAACATCC 60.685 55.000 15.19 0.00 0.00 3.51
7434 7718 0.458669 CAGGCCAGGCATCAAACATC 59.541 55.000 15.19 0.00 0.00 3.06
7435 7719 0.974010 CCAGGCCAGGCATCAAACAT 60.974 55.000 15.19 0.00 0.00 2.71
7436 7720 1.607178 CCAGGCCAGGCATCAAACA 60.607 57.895 15.19 0.00 0.00 2.83
7437 7721 2.353610 CCCAGGCCAGGCATCAAAC 61.354 63.158 15.19 0.00 0.00 2.93
7438 7722 2.037687 CCCAGGCCAGGCATCAAA 59.962 61.111 15.19 0.00 0.00 2.69
7439 7723 2.940467 TCCCAGGCCAGGCATCAA 60.940 61.111 15.19 0.00 0.00 2.57
7440 7724 3.731728 GTCCCAGGCCAGGCATCA 61.732 66.667 15.19 0.00 0.00 3.07
7441 7725 4.512914 GGTCCCAGGCCAGGCATC 62.513 72.222 15.19 0.00 0.00 3.91
7452 7736 4.664267 AGCTGCCTGGAGGTCCCA 62.664 66.667 0.00 0.00 44.25 4.37
7453 7737 4.106925 CAGCTGCCTGGAGGTCCC 62.107 72.222 0.00 0.00 37.57 4.46
7454 7738 2.417558 AAACAGCTGCCTGGAGGTCC 62.418 60.000 15.27 0.00 43.53 4.46
7455 7739 1.073897 AAACAGCTGCCTGGAGGTC 59.926 57.895 15.27 0.00 43.53 3.85
7456 7740 1.228367 CAAACAGCTGCCTGGAGGT 60.228 57.895 15.27 0.00 43.53 3.85
7457 7741 1.975407 CCAAACAGCTGCCTGGAGG 60.975 63.158 24.13 10.51 43.53 4.30
7458 7742 0.825010 AACCAAACAGCTGCCTGGAG 60.825 55.000 31.42 13.02 43.53 3.86
7459 7743 1.108727 CAACCAAACAGCTGCCTGGA 61.109 55.000 31.42 0.00 43.53 3.86
7460 7744 1.364901 CAACCAAACAGCTGCCTGG 59.635 57.895 25.82 25.82 43.53 4.45
7461 7745 1.364901 CCAACCAAACAGCTGCCTG 59.635 57.895 15.27 11.19 44.80 4.85
7462 7746 1.833934 CCCAACCAAACAGCTGCCT 60.834 57.895 15.27 0.00 0.00 4.75
7463 7747 0.825840 TACCCAACCAAACAGCTGCC 60.826 55.000 15.27 0.00 0.00 4.85
7464 7748 0.313987 GTACCCAACCAAACAGCTGC 59.686 55.000 15.27 0.00 0.00 5.25
7475 7759 0.037605 CTCGTCACCAGGTACCCAAC 60.038 60.000 8.74 0.00 0.00 3.77
7476 7760 0.178955 TCTCGTCACCAGGTACCCAA 60.179 55.000 8.74 0.00 0.00 4.12
7477 7761 0.611062 CTCTCGTCACCAGGTACCCA 60.611 60.000 8.74 0.00 0.00 4.51
7478 7762 0.323178 TCTCTCGTCACCAGGTACCC 60.323 60.000 8.74 0.00 0.00 3.69
7479 7763 1.096416 CTCTCTCGTCACCAGGTACC 58.904 60.000 2.73 2.73 0.00 3.34
7480 7764 0.452585 GCTCTCTCGTCACCAGGTAC 59.547 60.000 0.00 0.00 0.00 3.34
7481 7765 0.680280 GGCTCTCTCGTCACCAGGTA 60.680 60.000 0.00 0.00 0.00 3.08
7482 7766 1.979693 GGCTCTCTCGTCACCAGGT 60.980 63.158 0.00 0.00 0.00 4.00
7483 7767 2.888863 GGCTCTCTCGTCACCAGG 59.111 66.667 0.00 0.00 0.00 4.45
7484 7768 2.487428 CGGCTCTCTCGTCACCAG 59.513 66.667 0.00 0.00 0.00 4.00
7485 7769 3.062466 CCGGCTCTCTCGTCACCA 61.062 66.667 0.00 0.00 0.00 4.17
7486 7770 4.500116 GCCGGCTCTCTCGTCACC 62.500 72.222 22.15 0.00 0.00 4.02
7487 7771 4.500116 GGCCGGCTCTCTCGTCAC 62.500 72.222 28.56 0.41 0.00 3.67
7488 7772 4.742649 AGGCCGGCTCTCTCGTCA 62.743 66.667 28.56 0.00 0.00 4.35
7489 7773 4.200283 CAGGCCGGCTCTCTCGTC 62.200 72.222 28.56 6.68 0.00 4.20
7502 7786 0.244721 GTCAGATTTTGTGGCCAGGC 59.755 55.000 5.11 1.26 0.00 4.85
7503 7787 1.619654 TGTCAGATTTTGTGGCCAGG 58.380 50.000 5.11 0.00 0.00 4.45
7504 7788 2.605338 CGTTGTCAGATTTTGTGGCCAG 60.605 50.000 5.11 0.00 0.00 4.85
7505 7789 1.336440 CGTTGTCAGATTTTGTGGCCA 59.664 47.619 0.00 0.00 0.00 5.36
7506 7790 1.930371 GCGTTGTCAGATTTTGTGGCC 60.930 52.381 0.00 0.00 0.00 5.36
7507 7791 1.268999 TGCGTTGTCAGATTTTGTGGC 60.269 47.619 0.00 0.00 0.00 5.01
7508 7792 2.772568 TGCGTTGTCAGATTTTGTGG 57.227 45.000 0.00 0.00 0.00 4.17
7509 7793 5.164158 GCTAATTGCGTTGTCAGATTTTGTG 60.164 40.000 0.00 0.00 0.00 3.33
7510 7794 4.917415 GCTAATTGCGTTGTCAGATTTTGT 59.083 37.500 0.00 0.00 0.00 2.83
7511 7795 4.324402 GGCTAATTGCGTTGTCAGATTTTG 59.676 41.667 0.00 0.00 44.05 2.44
7512 7796 4.218417 AGGCTAATTGCGTTGTCAGATTTT 59.782 37.500 0.00 0.00 44.05 1.82
7513 7797 3.758554 AGGCTAATTGCGTTGTCAGATTT 59.241 39.130 0.00 0.00 44.05 2.17
7514 7798 3.127548 CAGGCTAATTGCGTTGTCAGATT 59.872 43.478 0.00 0.00 44.05 2.40
7515 7799 2.679837 CAGGCTAATTGCGTTGTCAGAT 59.320 45.455 0.00 0.00 44.05 2.90
7516 7800 2.076100 CAGGCTAATTGCGTTGTCAGA 58.924 47.619 0.00 0.00 44.05 3.27
7517 7801 1.131126 CCAGGCTAATTGCGTTGTCAG 59.869 52.381 0.00 0.00 44.05 3.51
7518 7802 1.164411 CCAGGCTAATTGCGTTGTCA 58.836 50.000 0.00 0.00 44.05 3.58
7519 7803 0.179163 GCCAGGCTAATTGCGTTGTC 60.179 55.000 3.29 0.00 44.05 3.18
7520 7804 1.595093 GGCCAGGCTAATTGCGTTGT 61.595 55.000 12.43 0.00 44.05 3.32
7521 7805 1.139520 GGCCAGGCTAATTGCGTTG 59.860 57.895 12.43 0.00 44.05 4.10
7522 7806 2.052104 GGGCCAGGCTAATTGCGTT 61.052 57.895 12.43 0.00 44.05 4.84
7523 7807 2.440247 GGGCCAGGCTAATTGCGT 60.440 61.111 12.43 0.00 44.05 5.24
7524 7808 3.219198 GGGGCCAGGCTAATTGCG 61.219 66.667 12.43 0.00 44.05 4.85
7525 7809 1.264045 TTTGGGGCCAGGCTAATTGC 61.264 55.000 12.43 0.00 41.94 3.56
7526 7810 1.066215 GTTTTGGGGCCAGGCTAATTG 60.066 52.381 12.43 0.00 0.00 2.32
7527 7811 1.275666 GTTTTGGGGCCAGGCTAATT 58.724 50.000 12.43 0.00 0.00 1.40
7528 7812 0.970427 CGTTTTGGGGCCAGGCTAAT 60.970 55.000 12.43 0.00 0.00 1.73
7529 7813 1.605165 CGTTTTGGGGCCAGGCTAA 60.605 57.895 12.43 1.63 0.00 3.09
7530 7814 2.034999 CGTTTTGGGGCCAGGCTA 59.965 61.111 12.43 0.00 0.00 3.93
7531 7815 3.868200 CTCGTTTTGGGGCCAGGCT 62.868 63.158 12.43 0.00 0.00 4.58
7532 7816 3.373565 CTCGTTTTGGGGCCAGGC 61.374 66.667 4.39 1.26 0.00 4.85
7533 7817 2.676471 CCTCGTTTTGGGGCCAGG 60.676 66.667 4.39 0.00 0.00 4.45
7534 7818 3.373565 GCCTCGTTTTGGGGCCAG 61.374 66.667 4.39 0.00 39.96 4.85
7535 7819 3.740495 TTGCCTCGTTTTGGGGCCA 62.740 57.895 4.39 0.00 44.71 5.36
7536 7820 2.915137 TTGCCTCGTTTTGGGGCC 60.915 61.111 2.86 0.00 44.71 5.80
7537 7821 1.744320 AACTTGCCTCGTTTTGGGGC 61.744 55.000 0.00 0.00 45.45 5.80
7538 7822 0.031994 CAACTTGCCTCGTTTTGGGG 59.968 55.000 0.00 0.00 0.00 4.96
7539 7823 0.031994 CCAACTTGCCTCGTTTTGGG 59.968 55.000 0.00 0.00 34.26 4.12
7540 7824 0.744281 ACCAACTTGCCTCGTTTTGG 59.256 50.000 0.00 0.00 42.15 3.28
7541 7825 2.577449 AACCAACTTGCCTCGTTTTG 57.423 45.000 0.00 0.00 0.00 2.44
7542 7826 2.034179 GCTAACCAACTTGCCTCGTTTT 59.966 45.455 0.00 0.00 0.00 2.43
7543 7827 1.607148 GCTAACCAACTTGCCTCGTTT 59.393 47.619 0.00 0.00 0.00 3.60
7544 7828 1.235724 GCTAACCAACTTGCCTCGTT 58.764 50.000 0.00 0.00 0.00 3.85
7545 7829 0.605589 GGCTAACCAACTTGCCTCGT 60.606 55.000 0.00 0.00 41.92 4.18
7546 7830 2.171635 GGCTAACCAACTTGCCTCG 58.828 57.895 0.00 0.00 41.92 4.63
7549 7833 1.305930 CCGAGGCTAACCAACTTGCC 61.306 60.000 0.00 0.00 45.21 4.52
7550 7834 1.923227 GCCGAGGCTAACCAACTTGC 61.923 60.000 6.90 0.00 39.06 4.01
7551 7835 1.305930 GGCCGAGGCTAACCAACTTG 61.306 60.000 14.33 0.00 41.60 3.16
7552 7836 1.002502 GGCCGAGGCTAACCAACTT 60.003 57.895 14.33 0.00 41.60 2.66
7553 7837 2.185310 CTGGCCGAGGCTAACCAACT 62.185 60.000 14.33 0.00 41.60 3.16
7554 7838 1.745489 CTGGCCGAGGCTAACCAAC 60.745 63.158 14.33 0.00 41.60 3.77
7555 7839 2.668632 CTGGCCGAGGCTAACCAA 59.331 61.111 14.33 0.00 41.60 3.67
7556 7840 3.399181 CCTGGCCGAGGCTAACCA 61.399 66.667 14.33 2.46 41.60 3.67
7563 7847 2.826777 ATTCACTTGCCTGGCCGAGG 62.827 60.000 17.53 14.87 46.13 4.63
7564 7848 0.962356 AATTCACTTGCCTGGCCGAG 60.962 55.000 17.53 16.15 0.00 4.63
7565 7849 0.960364 GAATTCACTTGCCTGGCCGA 60.960 55.000 17.53 4.64 0.00 5.54
7566 7850 1.508088 GAATTCACTTGCCTGGCCG 59.492 57.895 17.53 9.90 0.00 6.13
7567 7851 1.508088 CGAATTCACTTGCCTGGCC 59.492 57.895 17.53 0.00 0.00 5.36
7568 7852 0.960364 TCCGAATTCACTTGCCTGGC 60.960 55.000 12.87 12.87 0.00 4.85
7569 7853 0.804989 GTCCGAATTCACTTGCCTGG 59.195 55.000 6.22 0.00 0.00 4.45
7570 7854 0.443869 CGTCCGAATTCACTTGCCTG 59.556 55.000 6.22 0.00 0.00 4.85
7571 7855 1.298859 GCGTCCGAATTCACTTGCCT 61.299 55.000 6.22 0.00 0.00 4.75
7572 7856 1.134694 GCGTCCGAATTCACTTGCC 59.865 57.895 6.22 0.00 0.00 4.52
7573 7857 1.134694 GGCGTCCGAATTCACTTGC 59.865 57.895 6.22 3.88 0.00 4.01
7574 7858 0.443869 CAGGCGTCCGAATTCACTTG 59.556 55.000 6.22 0.00 0.00 3.16
7575 7859 0.673644 CCAGGCGTCCGAATTCACTT 60.674 55.000 6.22 0.00 0.00 3.16
7576 7860 1.079127 CCAGGCGTCCGAATTCACT 60.079 57.895 6.22 0.00 0.00 3.41
7577 7861 2.106683 CCCAGGCGTCCGAATTCAC 61.107 63.158 6.22 0.00 0.00 3.18
7578 7862 2.267642 CCCAGGCGTCCGAATTCA 59.732 61.111 6.22 0.00 0.00 2.57
7579 7863 3.202706 GCCCAGGCGTCCGAATTC 61.203 66.667 0.00 0.00 0.00 2.17
7589 7873 2.054453 CCTTTAGGCAAGCCCAGGC 61.054 63.158 7.62 0.00 42.33 4.85
7590 7874 0.394899 CTCCTTTAGGCAAGCCCAGG 60.395 60.000 7.62 10.94 36.58 4.45
7591 7875 1.034292 GCTCCTTTAGGCAAGCCCAG 61.034 60.000 7.62 1.60 36.58 4.45
7592 7876 1.000896 GCTCCTTTAGGCAAGCCCA 60.001 57.895 7.62 0.00 36.58 5.36
7593 7877 1.000896 TGCTCCTTTAGGCAAGCCC 60.001 57.895 7.62 0.00 35.00 5.19
7594 7878 1.661498 GCTGCTCCTTTAGGCAAGCC 61.661 60.000 2.02 2.02 38.02 4.35
7595 7879 1.661498 GGCTGCTCCTTTAGGCAAGC 61.661 60.000 0.00 3.21 39.11 4.01
7596 7880 0.034670 AGGCTGCTCCTTTAGGCAAG 60.035 55.000 0.00 0.00 44.75 4.01
7597 7881 0.322816 CAGGCTGCTCCTTTAGGCAA 60.323 55.000 0.00 0.00 44.75 4.52
7598 7882 1.300963 CAGGCTGCTCCTTTAGGCA 59.699 57.895 0.00 0.00 44.75 4.75
7599 7883 1.452833 CCAGGCTGCTCCTTTAGGC 60.453 63.158 9.56 0.00 44.75 3.93
7600 7884 1.225704 CCCAGGCTGCTCCTTTAGG 59.774 63.158 9.56 0.00 44.75 2.69
7601 7885 1.452833 GCCCAGGCTGCTCCTTTAG 60.453 63.158 9.56 0.00 44.75 1.85
7602 7886 2.677228 GCCCAGGCTGCTCCTTTA 59.323 61.111 9.56 0.00 44.75 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.