Multiple sequence alignment - TraesCS3B01G204600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G204600 chr3B 100.000 4010 0 0 1 4010 239256426 239252417 0.000000e+00 7406.0
1 TraesCS3B01G204600 chr3B 94.627 335 18 0 1588 1922 239254674 239254340 1.650000e-143 520.0
2 TraesCS3B01G204600 chr3B 94.627 335 18 0 1753 2087 239254839 239254505 1.650000e-143 520.0
3 TraesCS3B01G204600 chr3B 92.991 214 14 1 2485 2697 239253838 239253625 1.080000e-80 311.0
4 TraesCS3B01G204600 chr3B 92.991 214 14 1 2589 2802 239253942 239253730 1.080000e-80 311.0
5 TraesCS3B01G204600 chr3B 95.455 110 4 1 2484 2592 239253734 239253625 1.480000e-39 174.0
6 TraesCS3B01G204600 chr3B 95.455 110 4 1 2693 2802 239253943 239253835 1.480000e-39 174.0
7 TraesCS3B01G204600 chr3B 89.157 83 8 1 3616 3697 757935871 757935789 7.090000e-18 102.0
8 TraesCS3B01G204600 chr3D 94.401 1929 83 9 9 1922 162184850 162182932 0.000000e+00 2940.0
9 TraesCS3B01G204600 chr3D 96.296 945 35 0 1753 2697 162183266 162182322 0.000000e+00 1552.0
10 TraesCS3B01G204600 chr3D 95.754 942 26 5 2589 3518 162182534 162181595 0.000000e+00 1506.0
11 TraesCS3B01G204600 chr3D 97.468 316 6 2 3695 4010 162180855 162180542 4.560000e-149 538.0
12 TraesCS3B01G204600 chr3D 94.118 170 10 0 1588 1757 162183101 162182932 3.980000e-65 259.0
13 TraesCS3B01G204600 chr3D 92.941 170 12 0 1918 2087 162183266 162183097 8.610000e-62 248.0
14 TraesCS3B01G204600 chr3D 96.364 110 3 1 2693 2802 162182535 162182427 3.180000e-41 180.0
15 TraesCS3B01G204600 chr3D 96.226 106 4 0 3510 3615 162181253 162181148 1.480000e-39 174.0
16 TraesCS3B01G204600 chr3D 94.545 110 5 1 2484 2592 162182431 162182322 6.890000e-38 169.0
17 TraesCS3B01G204600 chr3A 95.692 1091 32 2 847 1922 192857588 192856498 0.000000e+00 1740.0
18 TraesCS3B01G204600 chr3A 95.362 1035 36 3 2593 3615 192856094 192855060 0.000000e+00 1635.0
19 TraesCS3B01G204600 chr3A 94.062 960 42 2 1753 2697 192856844 192855885 0.000000e+00 1443.0
20 TraesCS3B01G204600 chr3A 94.118 170 10 0 1588 1757 192856667 192856498 3.980000e-65 259.0
21 TraesCS3B01G204600 chr3A 93.529 170 10 1 3695 3863 192854767 192854598 6.650000e-63 252.0
22 TraesCS3B01G204600 chr3A 95.455 132 6 0 3855 3986 192847205 192847074 1.130000e-50 211.0
23 TraesCS3B01G204600 chr3A 87.363 182 11 4 1918 2087 192856844 192856663 8.790000e-47 198.0
24 TraesCS3B01G204600 chr3A 98.095 105 2 0 2698 2802 192856094 192855990 2.460000e-42 183.0
25 TraesCS3B01G204600 chr3A 94.545 110 5 1 2484 2592 192855994 192855885 6.890000e-38 169.0
26 TraesCS3B01G204600 chr7D 80.460 348 59 8 984 1327 234126663 234127005 1.430000e-64 257.0
27 TraesCS3B01G204600 chr7D 89.655 87 9 0 3610 3696 251037714 251037800 1.180000e-20 111.0
28 TraesCS3B01G204600 chr7D 86.364 88 10 2 3617 3703 566198857 566198943 1.190000e-15 95.3
29 TraesCS3B01G204600 chr7A 80.233 344 67 1 984 1327 247062740 247063082 1.430000e-64 257.0
30 TraesCS3B01G204600 chr7B 80.172 348 60 8 984 1327 205714854 205715196 6.650000e-63 252.0
31 TraesCS3B01G204600 chr1A 92.683 82 6 0 3613 3694 15376376 15376457 7.040000e-23 119.0
32 TraesCS3B01G204600 chr5B 95.082 61 3 0 3634 3694 89029092 89029152 3.300000e-16 97.1
33 TraesCS3B01G204600 chr1B 84.706 85 13 0 3612 3696 5765005 5765089 7.140000e-13 86.1
34 TraesCS3B01G204600 chr5D 85.366 82 11 1 3613 3693 301100391 301100310 2.570000e-12 84.2
35 TraesCS3B01G204600 chr6A 83.721 86 14 0 3612 3697 137169823 137169908 9.240000e-12 82.4
36 TraesCS3B01G204600 chr6A 84.810 79 12 0 3610 3688 564704984 564705062 3.320000e-11 80.5
37 TraesCS3B01G204600 chr5A 100.000 28 0 0 2287 2314 678307105 678307132 7.000000e-03 52.8
38 TraesCS3B01G204600 chr1D 100.000 28 0 0 2287 2314 21314935 21314962 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G204600 chr3B 239252417 239256426 4009 True 1345.142857 7406 95.163714 1 4010 7 chr3B.!!$R2 4009
1 TraesCS3B01G204600 chr3D 162180542 162184850 4308 True 840.666667 2940 95.345889 9 4010 9 chr3D.!!$R1 4001
2 TraesCS3B01G204600 chr3A 192854598 192857588 2990 True 734.875000 1740 94.095750 847 3863 8 chr3A.!!$R2 3016

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
369 372 0.393537 CCACTCTTCATGGAGGCCAC 60.394 60.0 5.01 0.0 39.87 5.01 F
1345 1358 0.109342 CCCCTCCAATTCGGATCTGG 59.891 60.0 0.62 0.0 45.19 3.86 F
2652 2683 0.039618 GGCAAATGGGTGGAGGAGAA 59.960 55.0 0.00 0.0 0.00 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1651 1667 0.114560 TCCTTCTCCGGTTCAGAGGT 59.885 55.0 0.00 0.0 31.96 3.85 R
2934 2965 0.034896 GTTTCTCCTCCAACTCCGCA 59.965 55.0 0.00 0.0 0.00 5.69 R
3627 4020 0.179156 CCTCGCGAGCCGTTAGTTAA 60.179 55.0 30.49 0.0 38.35 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.877443 CCCTTTCTTGTAACACCACCG 59.123 52.381 0.00 0.00 0.00 4.94
47 48 4.679905 CGGGTCCTCTAAAATGTGTCTACC 60.680 50.000 0.00 0.00 0.00 3.18
48 49 4.224370 GGGTCCTCTAAAATGTGTCTACCA 59.776 45.833 0.00 0.00 0.00 3.25
49 50 5.104485 GGGTCCTCTAAAATGTGTCTACCAT 60.104 44.000 0.00 0.00 0.00 3.55
50 51 5.817816 GGTCCTCTAAAATGTGTCTACCATG 59.182 44.000 0.00 0.00 0.00 3.66
62 63 4.002982 TGTCTACCATGAATGAACACAGC 58.997 43.478 0.00 0.00 0.00 4.40
87 89 1.948834 CACTTGTGACAATCTGGTGCA 59.051 47.619 0.00 0.00 0.00 4.57
91 93 1.675483 TGTGACAATCTGGTGCACAAC 59.325 47.619 20.43 2.20 34.69 3.32
139 141 5.762825 TTAGCGTAGATCTTGAACGGTAT 57.237 39.130 22.21 2.32 45.47 2.73
144 146 8.053026 AGCGTAGATCTTGAACGGTATATTAT 57.947 34.615 17.14 0.00 44.55 1.28
145 147 7.968956 AGCGTAGATCTTGAACGGTATATTATG 59.031 37.037 17.14 0.00 44.55 1.90
178 181 5.586243 CGACCTAACATGTTTGATGGATTCT 59.414 40.000 17.78 0.00 0.00 2.40
203 206 0.890683 CAACACTTTGGGGATGAGCC 59.109 55.000 0.00 0.00 0.00 4.70
205 208 0.482446 ACACTTTGGGGATGAGCCAA 59.518 50.000 0.00 0.00 38.95 4.52
208 211 1.928868 CTTTGGGGATGAGCCAAAGT 58.071 50.000 5.19 0.00 42.84 2.66
224 227 4.280929 GCCAAAGTATCCCAAAGTTGAACT 59.719 41.667 0.00 0.00 0.00 3.01
239 242 1.264020 TGAACTGCAAGATGTCAACGC 59.736 47.619 0.00 0.00 37.43 4.84
291 294 0.393808 AATCGTGGCCCTAAACGCAT 60.394 50.000 8.40 1.46 39.61 4.73
292 295 0.814010 ATCGTGGCCCTAAACGCATC 60.814 55.000 8.40 0.00 39.61 3.91
293 296 2.808958 CGTGGCCCTAAACGCATCG 61.809 63.158 0.00 0.00 32.40 3.84
294 297 2.822255 TGGCCCTAAACGCATCGC 60.822 61.111 0.00 0.00 0.00 4.58
295 298 2.822255 GGCCCTAAACGCATCGCA 60.822 61.111 0.00 0.00 0.00 5.10
296 299 2.186826 GGCCCTAAACGCATCGCAT 61.187 57.895 0.00 0.00 0.00 4.73
323 326 1.510844 GCCTTAAACATGGCCACCG 59.489 57.895 8.16 4.64 43.11 4.94
345 348 4.900259 CCTATCCGGGCCAGGGGT 62.900 72.222 22.79 12.73 0.00 4.95
369 372 0.393537 CCACTCTTCATGGAGGCCAC 60.394 60.000 5.01 0.00 39.87 5.01
370 373 0.617413 CACTCTTCATGGAGGCCACT 59.383 55.000 5.01 0.00 35.80 4.00
371 374 1.004044 CACTCTTCATGGAGGCCACTT 59.996 52.381 5.01 0.00 35.80 3.16
372 375 1.707427 ACTCTTCATGGAGGCCACTTT 59.293 47.619 5.01 0.00 35.80 2.66
373 376 2.108952 ACTCTTCATGGAGGCCACTTTT 59.891 45.455 5.01 0.00 35.80 2.27
388 391 3.287222 CACTTTTGGGTCAACTTCCTCA 58.713 45.455 0.00 0.00 0.00 3.86
411 414 3.613299 GGAGAGAAAGCTAGTAACAACGC 59.387 47.826 0.00 0.00 0.00 4.84
427 430 1.479709 ACGCCTCATTCTCACTAGCT 58.520 50.000 0.00 0.00 0.00 3.32
458 461 1.929860 ATCCTGCCCCCACACATCAG 61.930 60.000 0.00 0.00 0.00 2.90
507 510 1.725557 GAGCCCATCAGCTGCATGTG 61.726 60.000 9.47 6.55 45.15 3.21
514 517 2.259266 TCAGCTGCATGTGAAACTCA 57.741 45.000 9.47 0.00 38.04 3.41
516 519 3.941573 TCAGCTGCATGTGAAACTCATA 58.058 40.909 9.47 0.00 38.04 2.15
580 583 3.081804 CTCCGACAGCACCCTAAAAATT 58.918 45.455 0.00 0.00 0.00 1.82
605 608 2.027929 CCCTTTGACGGGTATGTGTACA 60.028 50.000 0.00 0.00 39.51 2.90
606 609 3.557475 CCCTTTGACGGGTATGTGTACAA 60.557 47.826 0.00 0.00 39.51 2.41
619 622 2.076863 GTGTACAAGTGATGGGTGAGC 58.923 52.381 0.00 0.00 0.00 4.26
631 634 1.216710 GGTGAGCTGAAGGAGGACG 59.783 63.158 0.00 0.00 0.00 4.79
647 650 0.692083 GACGGGTAAGGGTATGGGGT 60.692 60.000 0.00 0.00 0.00 4.95
649 652 0.691748 CGGGTAAGGGTATGGGGTGA 60.692 60.000 0.00 0.00 0.00 4.02
673 685 3.017314 CCGTATCTCGACGCGTGC 61.017 66.667 20.70 7.65 41.56 5.34
697 709 2.608268 TGATCGATCGGTTGCGTTTAA 58.392 42.857 20.03 0.00 0.00 1.52
701 713 5.464057 TGATCGATCGGTTGCGTTTAATTAT 59.536 36.000 20.03 0.00 0.00 1.28
813 825 1.043022 CTTGGGCCAAAAACTGAGCT 58.957 50.000 21.28 0.00 0.00 4.09
818 830 1.172812 GCCAAAAACTGAGCTCGGGT 61.173 55.000 26.07 18.28 0.00 5.28
877 889 3.266240 CCTAGTGGGCCAGGAAAAC 57.734 57.895 6.40 0.00 33.42 2.43
1239 1252 1.446272 CGGCTCCTTCCTCAACGAC 60.446 63.158 0.00 0.00 0.00 4.34
1345 1358 0.109342 CCCCTCCAATTCGGATCTGG 59.891 60.000 0.62 0.00 45.19 3.86
1651 1667 3.771160 GGAAGAAGGCCGCGGAGA 61.771 66.667 33.48 0.00 0.00 3.71
1707 1735 3.737172 CCTGTTGGCGGGCGAAAG 61.737 66.667 1.94 1.94 33.82 2.62
1708 1736 2.668212 CTGTTGGCGGGCGAAAGA 60.668 61.111 2.80 0.00 0.00 2.52
1709 1737 2.203224 TGTTGGCGGGCGAAAGAA 60.203 55.556 0.00 0.00 0.00 2.52
1710 1738 2.187599 CTGTTGGCGGGCGAAAGAAG 62.188 60.000 2.80 0.00 0.00 2.85
1711 1739 1.964373 GTTGGCGGGCGAAAGAAGA 60.964 57.895 0.00 0.00 0.00 2.87
1712 1740 1.964373 TTGGCGGGCGAAAGAAGAC 60.964 57.895 0.00 0.00 0.00 3.01
1713 1741 3.125573 GGCGGGCGAAAGAAGACC 61.126 66.667 0.00 0.00 0.00 3.85
1714 1742 2.358247 GCGGGCGAAAGAAGACCA 60.358 61.111 0.00 0.00 0.00 4.02
1715 1743 2.677979 GCGGGCGAAAGAAGACCAC 61.678 63.158 0.00 0.00 0.00 4.16
1716 1744 1.301401 CGGGCGAAAGAAGACCACA 60.301 57.895 0.00 0.00 0.00 4.17
1717 1745 1.291877 CGGGCGAAAGAAGACCACAG 61.292 60.000 0.00 0.00 0.00 3.66
1718 1746 1.578206 GGGCGAAAGAAGACCACAGC 61.578 60.000 0.00 0.00 0.00 4.40
1719 1747 0.884704 GGCGAAAGAAGACCACAGCA 60.885 55.000 0.00 0.00 0.00 4.41
1720 1748 0.514691 GCGAAAGAAGACCACAGCAG 59.485 55.000 0.00 0.00 0.00 4.24
1721 1749 1.871080 CGAAAGAAGACCACAGCAGT 58.129 50.000 0.00 0.00 0.00 4.40
1722 1750 2.213499 CGAAAGAAGACCACAGCAGTT 58.787 47.619 0.00 0.00 0.00 3.16
1723 1751 2.032549 CGAAAGAAGACCACAGCAGTTG 60.033 50.000 0.00 0.00 0.00 3.16
1724 1752 1.312815 AAGAAGACCACAGCAGTTGC 58.687 50.000 0.00 0.00 42.49 4.17
1734 1762 3.867771 GCAGTTGCTGAGTCGGAG 58.132 61.111 2.16 0.00 38.21 4.63
1735 1763 1.290324 GCAGTTGCTGAGTCGGAGA 59.710 57.895 2.16 0.00 38.21 3.71
1736 1764 0.319900 GCAGTTGCTGAGTCGGAGAA 60.320 55.000 2.16 0.00 36.60 2.87
1737 1765 1.873903 GCAGTTGCTGAGTCGGAGAAA 60.874 52.381 2.16 0.00 36.60 2.52
1738 1766 2.064762 CAGTTGCTGAGTCGGAGAAAG 58.935 52.381 2.16 0.00 32.72 2.62
1739 1767 1.001406 AGTTGCTGAGTCGGAGAAAGG 59.999 52.381 2.16 0.00 39.69 3.11
1740 1768 1.000955 GTTGCTGAGTCGGAGAAAGGA 59.999 52.381 2.16 0.00 39.69 3.36
1741 1769 0.891373 TGCTGAGTCGGAGAAAGGAG 59.109 55.000 2.16 0.00 39.69 3.69
1742 1770 1.178276 GCTGAGTCGGAGAAAGGAGA 58.822 55.000 2.16 0.00 39.69 3.71
1743 1771 1.135228 GCTGAGTCGGAGAAAGGAGAC 60.135 57.143 2.16 0.00 39.69 3.36
1744 1772 1.131504 CTGAGTCGGAGAAAGGAGACG 59.868 57.143 0.00 0.00 39.69 4.18
1745 1773 1.271217 TGAGTCGGAGAAAGGAGACGA 60.271 52.381 0.00 0.00 39.69 4.20
1746 1774 1.399089 GAGTCGGAGAAAGGAGACGAG 59.601 57.143 0.00 0.00 39.69 4.18
1747 1775 0.452585 GTCGGAGAAAGGAGACGAGG 59.547 60.000 0.00 0.00 39.69 4.63
1748 1776 0.327259 TCGGAGAAAGGAGACGAGGA 59.673 55.000 0.00 0.00 0.00 3.71
1749 1777 0.736053 CGGAGAAAGGAGACGAGGAG 59.264 60.000 0.00 0.00 0.00 3.69
1750 1778 1.107945 GGAGAAAGGAGACGAGGAGG 58.892 60.000 0.00 0.00 0.00 4.30
1751 1779 1.341187 GGAGAAAGGAGACGAGGAGGA 60.341 57.143 0.00 0.00 0.00 3.71
1752 1780 2.021457 GAGAAAGGAGACGAGGAGGAG 58.979 57.143 0.00 0.00 0.00 3.69
1753 1781 1.107945 GAAAGGAGACGAGGAGGAGG 58.892 60.000 0.00 0.00 0.00 4.30
1754 1782 0.705253 AAAGGAGACGAGGAGGAGGA 59.295 55.000 0.00 0.00 0.00 3.71
1755 1783 0.705253 AAGGAGACGAGGAGGAGGAA 59.295 55.000 0.00 0.00 0.00 3.36
1756 1784 0.257616 AGGAGACGAGGAGGAGGAAG 59.742 60.000 0.00 0.00 0.00 3.46
1757 1785 0.256464 GGAGACGAGGAGGAGGAAGA 59.744 60.000 0.00 0.00 0.00 2.87
1758 1786 1.675552 GAGACGAGGAGGAGGAAGAG 58.324 60.000 0.00 0.00 0.00 2.85
1759 1787 0.257616 AGACGAGGAGGAGGAAGAGG 59.742 60.000 0.00 0.00 0.00 3.69
1760 1788 0.753848 GACGAGGAGGAGGAAGAGGG 60.754 65.000 0.00 0.00 0.00 4.30
1761 1789 1.456705 CGAGGAGGAGGAAGAGGGG 60.457 68.421 0.00 0.00 0.00 4.79
1762 1790 1.074850 GAGGAGGAGGAAGAGGGGG 60.075 68.421 0.00 0.00 0.00 5.40
1763 1791 1.550374 AGGAGGAGGAAGAGGGGGA 60.550 63.158 0.00 0.00 0.00 4.81
1764 1792 1.074850 GGAGGAGGAAGAGGGGGAG 60.075 68.421 0.00 0.00 0.00 4.30
1765 1793 1.595058 GGAGGAGGAAGAGGGGGAGA 61.595 65.000 0.00 0.00 0.00 3.71
1766 1794 0.340208 GAGGAGGAAGAGGGGGAGAA 59.660 60.000 0.00 0.00 0.00 2.87
1767 1795 0.341609 AGGAGGAAGAGGGGGAGAAG 59.658 60.000 0.00 0.00 0.00 2.85
1768 1796 0.692756 GGAGGAAGAGGGGGAGAAGG 60.693 65.000 0.00 0.00 0.00 3.46
1769 1797 0.340208 GAGGAAGAGGGGGAGAAGGA 59.660 60.000 0.00 0.00 0.00 3.36
1770 1798 0.341609 AGGAAGAGGGGGAGAAGGAG 59.658 60.000 0.00 0.00 0.00 3.69
1771 1799 0.692756 GGAAGAGGGGGAGAAGGAGG 60.693 65.000 0.00 0.00 0.00 4.30
1772 1800 1.307430 AAGAGGGGGAGAAGGAGGC 60.307 63.158 0.00 0.00 0.00 4.70
1773 1801 2.770475 GAGGGGGAGAAGGAGGCC 60.770 72.222 0.00 0.00 0.00 5.19
1774 1802 4.439901 AGGGGGAGAAGGAGGCCC 62.440 72.222 0.00 0.00 41.28 5.80
1806 1834 4.261888 CGTGGTGGACGGAAGAAG 57.738 61.111 0.00 0.00 44.85 2.85
1807 1835 1.374252 CGTGGTGGACGGAAGAAGG 60.374 63.158 0.00 0.00 44.85 3.46
1808 1836 1.671379 GTGGTGGACGGAAGAAGGC 60.671 63.158 0.00 0.00 0.00 4.35
1809 1837 2.046217 GGTGGACGGAAGAAGGCC 60.046 66.667 0.00 0.00 0.00 5.19
1838 1866 4.013702 CGAACCGGAGAAGGAGGA 57.986 61.111 9.46 0.00 34.73 3.71
1839 1867 1.810532 CGAACCGGAGAAGGAGGAG 59.189 63.158 9.46 0.00 34.73 3.69
1840 1868 1.668101 CGAACCGGAGAAGGAGGAGG 61.668 65.000 9.46 0.00 34.73 4.30
1841 1869 1.962321 GAACCGGAGAAGGAGGAGGC 61.962 65.000 9.46 0.00 34.73 4.70
1842 1870 3.157949 CCGGAGAAGGAGGAGGCC 61.158 72.222 0.00 0.00 0.00 5.19
1843 1871 3.157949 CGGAGAAGGAGGAGGCCC 61.158 72.222 0.00 0.00 0.00 5.80
1844 1872 2.770475 GGAGAAGGAGGAGGCCCC 60.770 72.222 0.00 0.00 0.00 5.80
1845 1873 3.157949 GAGAAGGAGGAGGCCCCG 61.158 72.222 0.00 0.00 40.87 5.73
1875 1903 2.981350 GTTGGCGGGCGGAAGAAA 60.981 61.111 0.00 0.00 0.00 2.52
1927 1955 1.074850 GAGGAGGAGGAAGAGGGGG 60.075 68.421 0.00 0.00 0.00 5.40
1942 1970 3.093172 GGGAGAAGGAGGCCCTGG 61.093 72.222 0.00 0.00 43.48 4.45
1943 1971 3.803162 GGAGAAGGAGGCCCTGGC 61.803 72.222 0.00 0.00 43.48 4.85
2005 2033 2.110899 TCTGAACCTGAGAAGGAGGAGT 59.889 50.000 0.00 0.00 34.37 3.85
2042 2070 3.391665 CTGGCGGGCGGAAGAAGAT 62.392 63.158 3.99 0.00 0.00 2.40
2076 2104 3.636300 CTGAGTCGGAGAAAGGAGATGAT 59.364 47.826 0.00 0.00 39.69 2.45
2161 2189 1.150081 GATGTGGAGGCCCAGATGG 59.850 63.158 0.00 0.00 45.43 3.51
2262 2290 2.553247 GCAGGGAAGGTTTACAAGAGCT 60.553 50.000 0.00 0.00 0.00 4.09
2292 2320 3.429736 AGGAAGGCCTTTCTAGAGGAT 57.570 47.619 25.87 0.00 43.90 3.24
2313 2341 2.158158 TGAGGAAGTGGAGGAAGAGGAA 60.158 50.000 0.00 0.00 0.00 3.36
2352 2380 1.093159 CAAGAGATCAGCCTGGCAAC 58.907 55.000 22.65 8.74 0.00 4.17
2363 2391 0.535102 CCTGGCAACCTGTCGACTTT 60.535 55.000 17.92 4.49 0.00 2.66
2422 2453 1.657162 AGGAGAAGGGGGATAAGGTGA 59.343 52.381 0.00 0.00 0.00 4.02
2560 2591 2.288763 GGCGGAGAAGAGGAAGATGATC 60.289 54.545 0.00 0.00 0.00 2.92
2566 2597 4.378774 AGAAGAGGAAGATGATCGCAATG 58.621 43.478 0.00 0.00 0.00 2.82
2567 2598 3.123157 AGAGGAAGATGATCGCAATGG 57.877 47.619 0.00 0.00 0.00 3.16
2568 2599 2.149578 GAGGAAGATGATCGCAATGGG 58.850 52.381 0.00 0.00 0.00 4.00
2569 2600 1.202855 AGGAAGATGATCGCAATGGGG 60.203 52.381 0.00 0.00 0.00 4.96
2570 2601 1.202806 GGAAGATGATCGCAATGGGGA 60.203 52.381 0.00 0.00 40.57 4.81
2572 2603 2.965671 AGATGATCGCAATGGGGATT 57.034 45.000 0.46 0.00 45.66 3.01
2573 2604 3.234234 AGATGATCGCAATGGGGATTT 57.766 42.857 0.46 0.00 45.66 2.17
2574 2605 2.889045 AGATGATCGCAATGGGGATTTG 59.111 45.455 0.46 0.00 45.66 2.32
2575 2606 0.746063 TGATCGCAATGGGGATTTGC 59.254 50.000 0.46 0.00 45.66 3.68
2576 2607 1.035139 GATCGCAATGGGGATTTGCT 58.965 50.000 0.46 0.00 45.66 3.91
2577 2608 1.410153 GATCGCAATGGGGATTTGCTT 59.590 47.619 0.46 0.00 45.66 3.91
2578 2609 0.531657 TCGCAATGGGGATTTGCTTG 59.468 50.000 6.80 0.00 45.67 4.01
2579 2610 0.460635 CGCAATGGGGATTTGCTTGG 60.461 55.000 6.80 0.00 45.67 3.61
2580 2611 0.745486 GCAATGGGGATTTGCTTGGC 60.745 55.000 1.36 0.00 44.71 4.52
2581 2612 0.614294 CAATGGGGATTTGCTTGGCA 59.386 50.000 0.00 0.00 36.47 4.92
2582 2613 0.906775 AATGGGGATTTGCTTGGCAG 59.093 50.000 0.00 0.00 40.61 4.85
2583 2614 0.252375 ATGGGGATTTGCTTGGCAGT 60.252 50.000 0.00 0.00 40.61 4.40
2584 2615 0.407528 TGGGGATTTGCTTGGCAGTA 59.592 50.000 0.00 0.00 40.61 2.74
2585 2616 1.106285 GGGGATTTGCTTGGCAGTAG 58.894 55.000 0.00 0.00 40.61 2.57
2586 2617 1.340991 GGGGATTTGCTTGGCAGTAGA 60.341 52.381 0.00 0.00 40.61 2.59
2587 2618 2.446435 GGGATTTGCTTGGCAGTAGAA 58.554 47.619 0.00 0.00 40.61 2.10
2588 2619 2.424956 GGGATTTGCTTGGCAGTAGAAG 59.575 50.000 0.00 0.00 40.61 2.85
2589 2620 3.347216 GGATTTGCTTGGCAGTAGAAGA 58.653 45.455 0.00 0.00 40.61 2.87
2590 2621 3.376546 GGATTTGCTTGGCAGTAGAAGAG 59.623 47.826 0.00 0.00 40.61 2.85
2591 2622 3.769739 TTTGCTTGGCAGTAGAAGAGA 57.230 42.857 0.00 0.00 40.61 3.10
2592 2623 3.325293 TTGCTTGGCAGTAGAAGAGAG 57.675 47.619 0.00 0.00 40.61 3.20
2593 2624 1.552337 TGCTTGGCAGTAGAAGAGAGG 59.448 52.381 0.00 0.00 33.32 3.69
2594 2625 1.742071 GCTTGGCAGTAGAAGAGAGGC 60.742 57.143 0.00 0.00 0.00 4.70
2595 2626 1.830477 CTTGGCAGTAGAAGAGAGGCT 59.170 52.381 0.00 0.00 0.00 4.58
2596 2627 1.944177 TGGCAGTAGAAGAGAGGCTT 58.056 50.000 0.00 0.00 40.25 4.35
2605 2636 1.643310 AAGAGAGGCTTCTGCTCAGT 58.357 50.000 1.65 0.00 39.59 3.41
2606 2637 0.896923 AGAGAGGCTTCTGCTCAGTG 59.103 55.000 1.65 0.00 39.59 3.66
2607 2638 0.607620 GAGAGGCTTCTGCTCAGTGT 59.392 55.000 1.65 0.00 39.59 3.55
2608 2639 0.321021 AGAGGCTTCTGCTCAGTGTG 59.679 55.000 0.00 0.00 39.59 3.82
2609 2640 1.297456 GAGGCTTCTGCTCAGTGTGC 61.297 60.000 10.23 10.23 39.59 4.57
2610 2641 1.302351 GGCTTCTGCTCAGTGTGCT 60.302 57.895 17.38 0.00 39.59 4.40
2611 2642 1.575576 GGCTTCTGCTCAGTGTGCTG 61.576 60.000 17.38 16.40 38.81 4.41
2612 2643 1.867615 CTTCTGCTCAGTGTGCTGC 59.132 57.895 17.38 6.08 42.29 5.25
2613 2644 0.603172 CTTCTGCTCAGTGTGCTGCT 60.603 55.000 17.38 0.00 42.29 4.24
2614 2645 0.179037 TTCTGCTCAGTGTGCTGCTT 60.179 50.000 17.38 0.00 42.29 3.91
2615 2646 0.602106 TCTGCTCAGTGTGCTGCTTC 60.602 55.000 17.38 0.00 42.29 3.86
2616 2647 0.603172 CTGCTCAGTGTGCTGCTTCT 60.603 55.000 17.38 0.00 42.29 2.85
2617 2648 0.883370 TGCTCAGTGTGCTGCTTCTG 60.883 55.000 17.38 7.03 42.29 3.02
2618 2649 0.602106 GCTCAGTGTGCTGCTTCTGA 60.602 55.000 9.90 16.12 42.29 3.27
2619 2650 1.146637 CTCAGTGTGCTGCTTCTGAC 58.853 55.000 14.19 0.18 42.29 3.51
2620 2651 0.465287 TCAGTGTGCTGCTTCTGACA 59.535 50.000 14.19 2.56 42.29 3.58
2621 2652 1.134431 TCAGTGTGCTGCTTCTGACAA 60.134 47.619 14.19 0.00 42.29 3.18
2622 2653 1.878088 CAGTGTGCTGCTTCTGACAAT 59.122 47.619 0.00 0.00 35.77 2.71
2623 2654 1.878088 AGTGTGCTGCTTCTGACAATG 59.122 47.619 0.00 0.00 0.00 2.82
2624 2655 1.068748 GTGTGCTGCTTCTGACAATGG 60.069 52.381 0.00 0.00 0.00 3.16
2625 2656 0.524862 GTGCTGCTTCTGACAATGGG 59.475 55.000 0.00 0.00 0.00 4.00
2626 2657 0.609957 TGCTGCTTCTGACAATGGGG 60.610 55.000 0.00 0.00 0.00 4.96
2627 2658 0.322816 GCTGCTTCTGACAATGGGGA 60.323 55.000 0.00 0.00 0.00 4.81
2628 2659 1.684248 GCTGCTTCTGACAATGGGGAT 60.684 52.381 0.00 0.00 0.00 3.85
2629 2660 2.022195 CTGCTTCTGACAATGGGGATG 58.978 52.381 0.00 0.00 0.00 3.51
2630 2661 1.634973 TGCTTCTGACAATGGGGATGA 59.365 47.619 0.00 0.00 0.00 2.92
2631 2662 2.242965 TGCTTCTGACAATGGGGATGAT 59.757 45.455 0.00 0.00 0.00 2.45
2632 2663 3.294214 GCTTCTGACAATGGGGATGATT 58.706 45.455 0.00 0.00 0.00 2.57
2633 2664 3.067742 GCTTCTGACAATGGGGATGATTG 59.932 47.826 0.00 0.00 36.94 2.67
2634 2665 3.301794 TCTGACAATGGGGATGATTGG 57.698 47.619 0.00 0.00 35.48 3.16
2635 2666 1.684983 CTGACAATGGGGATGATTGGC 59.315 52.381 0.00 0.00 39.03 4.52
2636 2667 1.006878 TGACAATGGGGATGATTGGCA 59.993 47.619 0.00 0.00 44.84 4.92
2637 2668 2.109774 GACAATGGGGATGATTGGCAA 58.890 47.619 0.68 0.68 38.52 4.52
2638 2669 2.500910 GACAATGGGGATGATTGGCAAA 59.499 45.455 3.01 0.00 38.52 3.68
2639 2670 3.116959 ACAATGGGGATGATTGGCAAAT 58.883 40.909 3.01 0.00 35.48 2.32
2640 2671 3.118186 ACAATGGGGATGATTGGCAAATG 60.118 43.478 3.01 0.00 35.48 2.32
2641 2672 1.498264 TGGGGATGATTGGCAAATGG 58.502 50.000 3.01 0.00 0.00 3.16
2642 2673 0.760572 GGGGATGATTGGCAAATGGG 59.239 55.000 3.01 0.00 0.00 4.00
2643 2674 1.499368 GGGATGATTGGCAAATGGGT 58.501 50.000 3.01 0.00 0.00 4.51
2644 2675 1.139455 GGGATGATTGGCAAATGGGTG 59.861 52.381 3.01 0.00 0.00 4.61
2645 2676 1.139455 GGATGATTGGCAAATGGGTGG 59.861 52.381 3.01 0.00 0.00 4.61
2646 2677 2.109774 GATGATTGGCAAATGGGTGGA 58.890 47.619 3.01 0.00 0.00 4.02
2647 2678 1.559368 TGATTGGCAAATGGGTGGAG 58.441 50.000 3.01 0.00 0.00 3.86
2648 2679 0.826062 GATTGGCAAATGGGTGGAGG 59.174 55.000 3.01 0.00 0.00 4.30
2649 2680 0.413037 ATTGGCAAATGGGTGGAGGA 59.587 50.000 3.01 0.00 0.00 3.71
2650 2681 0.251742 TTGGCAAATGGGTGGAGGAG 60.252 55.000 0.00 0.00 0.00 3.69
2651 2682 1.139498 TGGCAAATGGGTGGAGGAGA 61.139 55.000 0.00 0.00 0.00 3.71
2652 2683 0.039618 GGCAAATGGGTGGAGGAGAA 59.960 55.000 0.00 0.00 0.00 2.87
2653 2684 1.467920 GCAAATGGGTGGAGGAGAAG 58.532 55.000 0.00 0.00 0.00 2.85
2654 2685 1.004745 GCAAATGGGTGGAGGAGAAGA 59.995 52.381 0.00 0.00 0.00 2.87
2655 2686 2.943199 GCAAATGGGTGGAGGAGAAGAG 60.943 54.545 0.00 0.00 0.00 2.85
2656 2687 1.589414 AATGGGTGGAGGAGAAGAGG 58.411 55.000 0.00 0.00 0.00 3.69
2657 2688 0.719015 ATGGGTGGAGGAGAAGAGGA 59.281 55.000 0.00 0.00 0.00 3.71
2658 2689 0.491823 TGGGTGGAGGAGAAGAGGAA 59.508 55.000 0.00 0.00 0.00 3.36
2659 2690 1.199615 GGGTGGAGGAGAAGAGGAAG 58.800 60.000 0.00 0.00 0.00 3.46
2660 2691 1.273324 GGGTGGAGGAGAAGAGGAAGA 60.273 57.143 0.00 0.00 0.00 2.87
2661 2692 2.628290 GGGTGGAGGAGAAGAGGAAGAT 60.628 54.545 0.00 0.00 0.00 2.40
2662 2693 2.433970 GGTGGAGGAGAAGAGGAAGATG 59.566 54.545 0.00 0.00 0.00 2.90
2663 2694 3.370104 GTGGAGGAGAAGAGGAAGATGA 58.630 50.000 0.00 0.00 0.00 2.92
2664 2695 3.966665 GTGGAGGAGAAGAGGAAGATGAT 59.033 47.826 0.00 0.00 0.00 2.45
2665 2696 3.966006 TGGAGGAGAAGAGGAAGATGATG 59.034 47.826 0.00 0.00 0.00 3.07
2666 2697 3.324556 GGAGGAGAAGAGGAAGATGATGG 59.675 52.174 0.00 0.00 0.00 3.51
2667 2698 2.705127 AGGAGAAGAGGAAGATGATGGC 59.295 50.000 0.00 0.00 0.00 4.40
2668 2699 2.437281 GGAGAAGAGGAAGATGATGGCA 59.563 50.000 0.00 0.00 0.00 4.92
2669 2700 3.118112 GGAGAAGAGGAAGATGATGGCAA 60.118 47.826 0.00 0.00 0.00 4.52
2670 2701 3.876320 GAGAAGAGGAAGATGATGGCAAC 59.124 47.826 0.00 0.00 0.00 4.17
2934 2965 0.763652 AGGCTGCGGATCAGATGATT 59.236 50.000 0.00 0.00 45.72 2.57
3101 3132 6.464222 TCACTTACTGTAGAAGAATTGGTGG 58.536 40.000 0.00 0.00 0.00 4.61
3102 3133 5.122396 CACTTACTGTAGAAGAATTGGTGGC 59.878 44.000 0.00 0.00 0.00 5.01
3220 3252 7.459795 TTTTGGTATGCATGATGTTTCTGTA 57.540 32.000 10.16 0.00 0.00 2.74
3246 3287 9.533831 AGGTTTCAGGAATAATGTTGAATACTT 57.466 29.630 0.00 0.00 30.45 2.24
3258 3299 4.023536 TGTTGAATACTTCCTCCGTTTTGC 60.024 41.667 0.00 0.00 0.00 3.68
3349 3390 4.102681 GCAGTTGGGTACTAGAATGGGTAT 59.897 45.833 0.00 0.00 34.56 2.73
3351 3392 4.658901 AGTTGGGTACTAGAATGGGTATGG 59.341 45.833 0.00 0.00 34.56 2.74
3370 3411 9.569122 GGGTATGGTAGCATTTTTCTCTTATTA 57.431 33.333 13.49 0.00 0.00 0.98
3444 3487 5.239306 TCTTTGTATGTTTCTGTCTTGCAGG 59.761 40.000 0.00 0.00 45.08 4.85
3525 3918 2.737252 GTGAGCCCTCTAAGTTTCAACG 59.263 50.000 0.00 0.00 0.00 4.10
3583 3976 7.549147 AAGTTGTCCTATAACTGTTCCTACA 57.451 36.000 0.00 0.00 38.32 2.74
3588 3981 5.758784 GTCCTATAACTGTTCCTACATTGGC 59.241 44.000 0.00 0.00 32.86 4.52
3615 4008 1.134670 AGCAGATTCTTGGACTACCGC 60.135 52.381 0.00 0.00 39.42 5.68
3616 4009 1.134670 GCAGATTCTTGGACTACCGCT 60.135 52.381 0.00 0.00 39.42 5.52
3619 4012 2.832129 AGATTCTTGGACTACCGCTTGA 59.168 45.455 0.00 0.00 39.42 3.02
3620 4013 3.452627 AGATTCTTGGACTACCGCTTGAT 59.547 43.478 0.00 0.00 39.42 2.57
3621 4014 3.695830 TTCTTGGACTACCGCTTGATT 57.304 42.857 0.00 0.00 39.42 2.57
3623 4016 4.015872 TCTTGGACTACCGCTTGATTTT 57.984 40.909 0.00 0.00 39.42 1.82
3624 4017 3.751175 TCTTGGACTACCGCTTGATTTTG 59.249 43.478 0.00 0.00 39.42 2.44
3626 4019 3.071479 TGGACTACCGCTTGATTTTGTC 58.929 45.455 0.00 0.00 39.42 3.18
3627 4020 3.244422 TGGACTACCGCTTGATTTTGTCT 60.244 43.478 0.00 0.00 39.42 3.41
3628 4021 3.751698 GGACTACCGCTTGATTTTGTCTT 59.248 43.478 0.00 0.00 0.00 3.01
3630 4023 5.410439 GGACTACCGCTTGATTTTGTCTTAA 59.590 40.000 0.00 0.00 0.00 1.85
3631 4024 6.237313 ACTACCGCTTGATTTTGTCTTAAC 57.763 37.500 0.00 0.00 0.00 2.01
3632 4025 5.995897 ACTACCGCTTGATTTTGTCTTAACT 59.004 36.000 0.00 0.00 0.00 2.24
3633 4026 7.156673 ACTACCGCTTGATTTTGTCTTAACTA 58.843 34.615 0.00 0.00 0.00 2.24
3634 4027 6.870971 ACCGCTTGATTTTGTCTTAACTAA 57.129 33.333 0.00 0.00 0.00 2.24
3635 4028 6.665465 ACCGCTTGATTTTGTCTTAACTAAC 58.335 36.000 0.00 0.00 0.00 2.34
3636 4029 5.788531 CCGCTTGATTTTGTCTTAACTAACG 59.211 40.000 0.00 0.00 0.00 3.18
3637 4030 5.788531 CGCTTGATTTTGTCTTAACTAACGG 59.211 40.000 0.00 0.00 0.00 4.44
3638 4031 5.567915 GCTTGATTTTGTCTTAACTAACGGC 59.432 40.000 0.00 0.00 0.00 5.68
3639 4032 6.567891 GCTTGATTTTGTCTTAACTAACGGCT 60.568 38.462 0.00 0.00 0.00 5.52
3640 4033 6.476243 TGATTTTGTCTTAACTAACGGCTC 57.524 37.500 0.00 0.00 0.00 4.70
3641 4034 4.977741 TTTTGTCTTAACTAACGGCTCG 57.022 40.909 0.00 0.00 0.00 5.03
3642 4035 1.986698 TGTCTTAACTAACGGCTCGC 58.013 50.000 0.00 0.00 0.00 5.03
3643 4036 0.912528 GTCTTAACTAACGGCTCGCG 59.087 55.000 0.00 0.00 0.00 5.87
3644 4037 0.804364 TCTTAACTAACGGCTCGCGA 59.196 50.000 9.26 9.26 0.00 5.87
3645 4038 1.189403 CTTAACTAACGGCTCGCGAG 58.811 55.000 31.37 31.37 0.00 5.03
3646 4039 0.179156 TTAACTAACGGCTCGCGAGG 60.179 55.000 35.10 22.64 0.00 4.63
3659 4052 2.511600 CGAGGCGGCGGATCTTTT 60.512 61.111 9.78 0.00 0.00 2.27
3660 4053 1.227147 CGAGGCGGCGGATCTTTTA 60.227 57.895 9.78 0.00 0.00 1.52
3663 4056 1.741145 GAGGCGGCGGATCTTTTAAAA 59.259 47.619 9.78 0.00 0.00 1.52
3665 4058 2.099098 AGGCGGCGGATCTTTTAAAATG 59.901 45.455 9.78 0.00 0.00 2.32
3666 4059 2.098443 GGCGGCGGATCTTTTAAAATGA 59.902 45.455 9.78 2.24 0.00 2.57
3668 4061 3.975035 GCGGCGGATCTTTTAAAATGATC 59.025 43.478 20.60 20.60 36.72 2.92
3670 4063 5.207768 CGGCGGATCTTTTAAAATGATCTG 58.792 41.667 25.71 25.71 43.01 2.90
3673 4066 5.207768 CGGATCTTTTAAAATGATCTGCCG 58.792 41.667 24.09 19.91 36.97 5.69
3674 4067 5.523369 GGATCTTTTAAAATGATCTGCCGG 58.477 41.667 24.09 0.00 37.38 6.13
3675 4068 4.370364 TCTTTTAAAATGATCTGCCGGC 57.630 40.909 22.73 22.73 0.00 6.13
3676 4069 3.130340 TCTTTTAAAATGATCTGCCGGCC 59.870 43.478 26.77 9.02 0.00 6.13
3677 4070 1.398692 TTAAAATGATCTGCCGGCCC 58.601 50.000 26.77 11.16 0.00 5.80
3678 4071 0.257328 TAAAATGATCTGCCGGCCCA 59.743 50.000 26.77 16.81 0.00 5.36
3679 4072 1.322538 AAAATGATCTGCCGGCCCAC 61.323 55.000 26.77 13.32 0.00 4.61
3680 4073 4.552365 ATGATCTGCCGGCCCACG 62.552 66.667 26.77 10.00 43.80 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.508994 GGTGGTGTTACAAGAAAGGGAAATG 60.509 44.000 0.00 0.00 0.00 2.32
1 2 4.587262 GGTGGTGTTACAAGAAAGGGAAAT 59.413 41.667 0.00 0.00 0.00 2.17
2 3 3.955551 GGTGGTGTTACAAGAAAGGGAAA 59.044 43.478 0.00 0.00 0.00 3.13
3 4 3.558033 GGTGGTGTTACAAGAAAGGGAA 58.442 45.455 0.00 0.00 0.00 3.97
4 5 2.485835 CGGTGGTGTTACAAGAAAGGGA 60.486 50.000 0.00 0.00 0.00 4.20
5 6 1.877443 CGGTGGTGTTACAAGAAAGGG 59.123 52.381 0.00 0.00 0.00 3.95
6 7 1.877443 CCGGTGGTGTTACAAGAAAGG 59.123 52.381 0.00 0.00 0.00 3.11
7 8 1.877443 CCCGGTGGTGTTACAAGAAAG 59.123 52.381 0.00 0.00 0.00 2.62
25 26 4.224370 TGGTAGACACATTTTAGAGGACCC 59.776 45.833 0.00 0.00 0.00 4.46
47 48 2.815503 TGACAGGCTGTGTTCATTCATG 59.184 45.455 27.45 0.00 40.56 3.07
48 49 2.816087 GTGACAGGCTGTGTTCATTCAT 59.184 45.455 27.45 0.00 40.56 2.57
49 50 2.158769 AGTGACAGGCTGTGTTCATTCA 60.159 45.455 27.45 11.98 40.56 2.57
50 51 2.498167 AGTGACAGGCTGTGTTCATTC 58.502 47.619 27.45 9.17 40.56 2.67
87 89 1.975680 ACCTAGATTGTCCCACGTTGT 59.024 47.619 0.00 0.00 0.00 3.32
91 93 0.249120 TGCACCTAGATTGTCCCACG 59.751 55.000 0.00 0.00 0.00 4.94
139 141 6.274579 TGTTAGGTCGATTGCGTTCATAATA 58.725 36.000 0.00 0.00 38.98 0.98
144 146 2.442212 TGTTAGGTCGATTGCGTTCA 57.558 45.000 0.00 0.00 38.98 3.18
145 147 2.671396 ACATGTTAGGTCGATTGCGTTC 59.329 45.455 0.00 0.00 38.98 3.95
203 206 5.221224 TGCAGTTCAACTTTGGGATACTTTG 60.221 40.000 0.00 0.00 0.00 2.77
205 208 4.469657 TGCAGTTCAACTTTGGGATACTT 58.530 39.130 0.00 0.00 0.00 2.24
208 211 4.724399 TCTTGCAGTTCAACTTTGGGATA 58.276 39.130 0.00 0.00 0.00 2.59
224 227 0.310543 GGTTGCGTTGACATCTTGCA 59.689 50.000 0.00 0.00 0.00 4.08
256 259 5.965334 GCCACGATTGTTGACATTTGTATAG 59.035 40.000 0.00 0.00 0.00 1.31
272 275 0.393808 ATGCGTTTAGGGCCACGATT 60.394 50.000 17.90 2.18 38.76 3.34
326 329 3.242291 CCCTGGCCCGGATAGGTC 61.242 72.222 16.02 0.00 38.74 3.85
330 333 2.203182 CTACCCCTGGCCCGGATA 59.797 66.667 16.02 5.90 0.00 2.59
345 348 1.833630 CCTCCATGAAGAGTGGCACTA 59.166 52.381 22.11 5.01 36.66 2.74
369 372 2.887152 CCTGAGGAAGTTGACCCAAAAG 59.113 50.000 0.00 0.00 0.00 2.27
370 373 2.512056 TCCTGAGGAAGTTGACCCAAAA 59.488 45.455 0.00 0.00 0.00 2.44
371 374 2.106511 CTCCTGAGGAAGTTGACCCAAA 59.893 50.000 1.41 0.00 0.00 3.28
372 375 1.699634 CTCCTGAGGAAGTTGACCCAA 59.300 52.381 1.41 0.00 0.00 4.12
373 376 1.132849 TCTCCTGAGGAAGTTGACCCA 60.133 52.381 1.41 0.00 0.00 4.51
388 391 4.618693 GCGTTGTTACTAGCTTTCTCTCCT 60.619 45.833 0.00 0.00 0.00 3.69
411 414 5.754406 CAGATTTCAGCTAGTGAGAATGAGG 59.246 44.000 0.00 0.00 36.21 3.86
427 430 1.409241 GGGCAGGATCAGCAGATTTCA 60.409 52.381 10.94 0.00 33.72 2.69
563 566 4.082408 GGGTACAATTTTTAGGGTGCTGTC 60.082 45.833 0.00 0.00 0.00 3.51
570 573 5.336134 CCGTCAAAGGGTACAATTTTTAGGG 60.336 44.000 0.00 0.00 0.00 3.53
600 603 1.977854 AGCTCACCCATCACTTGTACA 59.022 47.619 0.00 0.00 0.00 2.90
605 608 1.004044 CCTTCAGCTCACCCATCACTT 59.996 52.381 0.00 0.00 0.00 3.16
606 609 0.617413 CCTTCAGCTCACCCATCACT 59.383 55.000 0.00 0.00 0.00 3.41
619 622 0.824759 CCTTACCCGTCCTCCTTCAG 59.175 60.000 0.00 0.00 0.00 3.02
631 634 1.829138 ATCACCCCATACCCTTACCC 58.171 55.000 0.00 0.00 0.00 3.69
647 650 1.679680 GTCGAGATACGGGTGGAATCA 59.320 52.381 0.00 0.00 42.82 2.57
649 652 0.666913 CGTCGAGATACGGGTGGAAT 59.333 55.000 0.00 0.00 42.82 3.01
673 685 0.230515 CGCAACCGATCGATCATGTG 59.769 55.000 24.40 20.04 36.29 3.21
709 721 6.867550 CCTCAAAAAGGGAGAAAATATGGAC 58.132 40.000 0.00 0.00 42.03 4.02
771 783 7.234661 AGCCCGATTAAAACCAAAATCTTAA 57.765 32.000 0.00 0.00 31.29 1.85
772 784 6.844097 AGCCCGATTAAAACCAAAATCTTA 57.156 33.333 0.00 0.00 31.29 2.10
773 785 5.738619 AGCCCGATTAAAACCAAAATCTT 57.261 34.783 0.00 0.00 31.29 2.40
774 786 5.478407 CAAGCCCGATTAAAACCAAAATCT 58.522 37.500 0.00 0.00 31.29 2.40
877 889 2.033299 ACGACAATGCCACTGAACAAAG 59.967 45.455 0.00 0.00 0.00 2.77
1027 1040 2.852075 ACCCTTCTCCACCGCCAA 60.852 61.111 0.00 0.00 0.00 4.52
1143 1156 0.538584 TGGAGAGATGTTGCTGCGAT 59.461 50.000 0.00 0.00 0.00 4.58
1250 1263 2.989253 GGGTGGGAACAAAGGGCG 60.989 66.667 0.00 0.00 46.06 6.13
1540 1556 2.758737 CTTCCTACGTCCGCCCCT 60.759 66.667 0.00 0.00 0.00 4.79
1651 1667 0.114560 TCCTTCTCCGGTTCAGAGGT 59.885 55.000 0.00 0.00 31.96 3.85
1692 1720 2.203224 TTCTTTCGCCCGCCAACA 60.203 55.556 0.00 0.00 0.00 3.33
1693 1721 1.964373 TCTTCTTTCGCCCGCCAAC 60.964 57.895 0.00 0.00 0.00 3.77
1694 1722 1.964373 GTCTTCTTTCGCCCGCCAA 60.964 57.895 0.00 0.00 0.00 4.52
1695 1723 2.358247 GTCTTCTTTCGCCCGCCA 60.358 61.111 0.00 0.00 0.00 5.69
1696 1724 3.125573 GGTCTTCTTTCGCCCGCC 61.126 66.667 0.00 0.00 0.00 6.13
1697 1725 2.358247 TGGTCTTCTTTCGCCCGC 60.358 61.111 0.00 0.00 0.00 6.13
1698 1726 1.291877 CTGTGGTCTTCTTTCGCCCG 61.292 60.000 0.00 0.00 0.00 6.13
1699 1727 1.578206 GCTGTGGTCTTCTTTCGCCC 61.578 60.000 0.00 0.00 0.00 6.13
1700 1728 0.884704 TGCTGTGGTCTTCTTTCGCC 60.885 55.000 0.00 0.00 0.00 5.54
1701 1729 0.514691 CTGCTGTGGTCTTCTTTCGC 59.485 55.000 0.00 0.00 0.00 4.70
1702 1730 1.871080 ACTGCTGTGGTCTTCTTTCG 58.129 50.000 0.00 0.00 0.00 3.46
1703 1731 2.287248 GCAACTGCTGTGGTCTTCTTTC 60.287 50.000 0.00 0.00 38.21 2.62
1704 1732 1.678101 GCAACTGCTGTGGTCTTCTTT 59.322 47.619 0.00 0.00 38.21 2.52
1705 1733 1.312815 GCAACTGCTGTGGTCTTCTT 58.687 50.000 0.00 0.00 38.21 2.52
1706 1734 3.012560 GCAACTGCTGTGGTCTTCT 57.987 52.632 0.00 0.00 38.21 2.85
1717 1745 0.319900 TTCTCCGACTCAGCAACTGC 60.320 55.000 0.00 0.00 42.49 4.40
1718 1746 2.064762 CTTTCTCCGACTCAGCAACTG 58.935 52.381 0.00 0.00 0.00 3.16
1719 1747 1.001406 CCTTTCTCCGACTCAGCAACT 59.999 52.381 0.00 0.00 0.00 3.16
1720 1748 1.000955 TCCTTTCTCCGACTCAGCAAC 59.999 52.381 0.00 0.00 0.00 4.17
1721 1749 1.273606 CTCCTTTCTCCGACTCAGCAA 59.726 52.381 0.00 0.00 0.00 3.91
1722 1750 0.891373 CTCCTTTCTCCGACTCAGCA 59.109 55.000 0.00 0.00 0.00 4.41
1723 1751 1.135228 GTCTCCTTTCTCCGACTCAGC 60.135 57.143 0.00 0.00 0.00 4.26
1724 1752 1.131504 CGTCTCCTTTCTCCGACTCAG 59.868 57.143 0.00 0.00 0.00 3.35
1725 1753 1.166129 CGTCTCCTTTCTCCGACTCA 58.834 55.000 0.00 0.00 0.00 3.41
1726 1754 1.399089 CTCGTCTCCTTTCTCCGACTC 59.601 57.143 0.00 0.00 0.00 3.36
1727 1755 1.455248 CTCGTCTCCTTTCTCCGACT 58.545 55.000 0.00 0.00 0.00 4.18
1728 1756 0.452585 CCTCGTCTCCTTTCTCCGAC 59.547 60.000 0.00 0.00 0.00 4.79
1729 1757 0.327259 TCCTCGTCTCCTTTCTCCGA 59.673 55.000 0.00 0.00 0.00 4.55
1730 1758 0.736053 CTCCTCGTCTCCTTTCTCCG 59.264 60.000 0.00 0.00 0.00 4.63
1731 1759 1.107945 CCTCCTCGTCTCCTTTCTCC 58.892 60.000 0.00 0.00 0.00 3.71
1732 1760 2.021457 CTCCTCCTCGTCTCCTTTCTC 58.979 57.143 0.00 0.00 0.00 2.87
1733 1761 1.341581 CCTCCTCCTCGTCTCCTTTCT 60.342 57.143 0.00 0.00 0.00 2.52
1734 1762 1.107945 CCTCCTCCTCGTCTCCTTTC 58.892 60.000 0.00 0.00 0.00 2.62
1735 1763 0.705253 TCCTCCTCCTCGTCTCCTTT 59.295 55.000 0.00 0.00 0.00 3.11
1736 1764 0.705253 TTCCTCCTCCTCGTCTCCTT 59.295 55.000 0.00 0.00 0.00 3.36
1737 1765 0.257616 CTTCCTCCTCCTCGTCTCCT 59.742 60.000 0.00 0.00 0.00 3.69
1738 1766 0.256464 TCTTCCTCCTCCTCGTCTCC 59.744 60.000 0.00 0.00 0.00 3.71
1739 1767 1.675552 CTCTTCCTCCTCCTCGTCTC 58.324 60.000 0.00 0.00 0.00 3.36
1740 1768 0.257616 CCTCTTCCTCCTCCTCGTCT 59.742 60.000 0.00 0.00 0.00 4.18
1741 1769 0.753848 CCCTCTTCCTCCTCCTCGTC 60.754 65.000 0.00 0.00 0.00 4.20
1742 1770 1.308326 CCCTCTTCCTCCTCCTCGT 59.692 63.158 0.00 0.00 0.00 4.18
1743 1771 1.456705 CCCCTCTTCCTCCTCCTCG 60.457 68.421 0.00 0.00 0.00 4.63
1744 1772 1.074850 CCCCCTCTTCCTCCTCCTC 60.075 68.421 0.00 0.00 0.00 3.71
1745 1773 1.550374 TCCCCCTCTTCCTCCTCCT 60.550 63.158 0.00 0.00 0.00 3.69
1746 1774 1.074850 CTCCCCCTCTTCCTCCTCC 60.075 68.421 0.00 0.00 0.00 4.30
1747 1775 0.340208 TTCTCCCCCTCTTCCTCCTC 59.660 60.000 0.00 0.00 0.00 3.71
1748 1776 0.341609 CTTCTCCCCCTCTTCCTCCT 59.658 60.000 0.00 0.00 0.00 3.69
1749 1777 0.692756 CCTTCTCCCCCTCTTCCTCC 60.693 65.000 0.00 0.00 0.00 4.30
1750 1778 0.340208 TCCTTCTCCCCCTCTTCCTC 59.660 60.000 0.00 0.00 0.00 3.71
1751 1779 0.341609 CTCCTTCTCCCCCTCTTCCT 59.658 60.000 0.00 0.00 0.00 3.36
1752 1780 0.692756 CCTCCTTCTCCCCCTCTTCC 60.693 65.000 0.00 0.00 0.00 3.46
1753 1781 1.341913 GCCTCCTTCTCCCCCTCTTC 61.342 65.000 0.00 0.00 0.00 2.87
1754 1782 1.307430 GCCTCCTTCTCCCCCTCTT 60.307 63.158 0.00 0.00 0.00 2.85
1755 1783 2.370633 GCCTCCTTCTCCCCCTCT 59.629 66.667 0.00 0.00 0.00 3.69
1756 1784 2.770475 GGCCTCCTTCTCCCCCTC 60.770 72.222 0.00 0.00 0.00 4.30
1757 1785 4.439901 GGGCCTCCTTCTCCCCCT 62.440 72.222 0.84 0.00 33.91 4.79
1790 1818 1.671379 GCCTTCTTCCGTCCACCAC 60.671 63.158 0.00 0.00 0.00 4.16
1791 1819 2.747686 GCCTTCTTCCGTCCACCA 59.252 61.111 0.00 0.00 0.00 4.17
1792 1820 2.046217 GGCCTTCTTCCGTCCACC 60.046 66.667 0.00 0.00 0.00 4.61
1793 1821 2.434359 CGGCCTTCTTCCGTCCAC 60.434 66.667 0.00 0.00 41.85 4.02
1821 1849 1.668101 CCTCCTCCTTCTCCGGTTCG 61.668 65.000 0.00 0.00 0.00 3.95
1822 1850 1.962321 GCCTCCTCCTTCTCCGGTTC 61.962 65.000 0.00 0.00 0.00 3.62
1823 1851 1.990614 GCCTCCTCCTTCTCCGGTT 60.991 63.158 0.00 0.00 0.00 4.44
1824 1852 2.364448 GCCTCCTCCTTCTCCGGT 60.364 66.667 0.00 0.00 0.00 5.28
1825 1853 3.157949 GGCCTCCTCCTTCTCCGG 61.158 72.222 0.00 0.00 0.00 5.14
1826 1854 3.157949 GGGCCTCCTCCTTCTCCG 61.158 72.222 0.84 0.00 0.00 4.63
1827 1855 2.770475 GGGGCCTCCTCCTTCTCC 60.770 72.222 0.84 0.00 0.00 3.71
1828 1856 3.157949 CGGGGCCTCCTCCTTCTC 61.158 72.222 0.84 0.00 0.00 2.87
1856 1884 4.697756 TCTTCCGCCCGCCAACAG 62.698 66.667 0.00 0.00 0.00 3.16
1894 1922 2.660572 CTCCTCATCTCCTTTCTCCGA 58.339 52.381 0.00 0.00 0.00 4.55
1927 1955 4.168291 CGCCAGGGCCTCCTTCTC 62.168 72.222 0.95 0.00 42.67 2.87
1992 2020 1.000486 CGGGGACTCCTCCTTCTCA 60.000 63.158 0.00 0.00 36.68 3.27
2076 2104 2.123632 AGCAGGGCTTCCTCCTCA 59.876 61.111 0.00 0.00 39.29 3.86
2162 2190 3.064987 CTCCTCCCACGGCGTGTAG 62.065 68.421 34.74 29.06 0.00 2.74
2262 2290 1.952621 AGGCCTTCCTTGTACTAGCA 58.047 50.000 0.00 0.00 40.66 3.49
2281 2309 4.947883 TCCACTTCCTCATCCTCTAGAAA 58.052 43.478 0.00 0.00 0.00 2.52
2292 2320 1.433199 TCCTCTTCCTCCACTTCCTCA 59.567 52.381 0.00 0.00 0.00 3.86
2313 2341 0.607489 GCACAGCCACCTCATGTTCT 60.607 55.000 0.00 0.00 0.00 3.01
2363 2391 0.981183 ACCATCCTTTACCGCTGTCA 59.019 50.000 0.00 0.00 0.00 3.58
2422 2453 2.736719 CGATTTCTCCATCGTCAGCTGT 60.737 50.000 14.67 0.00 41.03 4.40
2566 2597 1.106285 CTACTGCCAAGCAAATCCCC 58.894 55.000 0.00 0.00 38.41 4.81
2567 2598 2.128771 TCTACTGCCAAGCAAATCCC 57.871 50.000 0.00 0.00 38.41 3.85
2568 2599 3.347216 TCTTCTACTGCCAAGCAAATCC 58.653 45.455 0.00 0.00 38.41 3.01
2569 2600 4.256920 TCTCTTCTACTGCCAAGCAAATC 58.743 43.478 0.00 0.00 38.41 2.17
2570 2601 4.260170 CTCTCTTCTACTGCCAAGCAAAT 58.740 43.478 0.00 0.00 38.41 2.32
2571 2602 3.557898 CCTCTCTTCTACTGCCAAGCAAA 60.558 47.826 0.00 0.00 38.41 3.68
2572 2603 2.027745 CCTCTCTTCTACTGCCAAGCAA 60.028 50.000 0.00 0.00 38.41 3.91
2573 2604 1.552337 CCTCTCTTCTACTGCCAAGCA 59.448 52.381 0.00 0.00 36.92 3.91
2574 2605 1.742071 GCCTCTCTTCTACTGCCAAGC 60.742 57.143 0.00 0.00 0.00 4.01
2575 2606 1.830477 AGCCTCTCTTCTACTGCCAAG 59.170 52.381 0.00 0.00 0.00 3.61
2576 2607 1.944177 AGCCTCTCTTCTACTGCCAA 58.056 50.000 0.00 0.00 0.00 4.52
2577 2608 1.827969 GAAGCCTCTCTTCTACTGCCA 59.172 52.381 0.00 0.00 45.99 4.92
2578 2609 2.595124 GAAGCCTCTCTTCTACTGCC 57.405 55.000 0.00 0.00 45.99 4.85
2586 2617 1.275856 CACTGAGCAGAAGCCTCTCTT 59.724 52.381 4.21 0.00 43.56 2.85
2587 2618 0.896923 CACTGAGCAGAAGCCTCTCT 59.103 55.000 4.21 0.00 43.56 3.10
2588 2619 0.607620 ACACTGAGCAGAAGCCTCTC 59.392 55.000 4.21 0.00 43.56 3.20
2589 2620 0.321021 CACACTGAGCAGAAGCCTCT 59.679 55.000 4.21 0.00 43.56 3.69
2590 2621 1.297456 GCACACTGAGCAGAAGCCTC 61.297 60.000 4.21 0.00 43.56 4.70
2591 2622 1.302351 GCACACTGAGCAGAAGCCT 60.302 57.895 4.21 0.00 43.56 4.58
2592 2623 1.302351 AGCACACTGAGCAGAAGCC 60.302 57.895 4.21 0.00 43.56 4.35
2593 2624 4.375569 AGCACACTGAGCAGAAGC 57.624 55.556 4.21 5.18 42.56 3.86
2603 2634 1.878088 CATTGTCAGAAGCAGCACACT 59.122 47.619 0.00 0.00 0.00 3.55
2604 2635 1.068748 CCATTGTCAGAAGCAGCACAC 60.069 52.381 0.00 0.00 0.00 3.82
2605 2636 1.241165 CCATTGTCAGAAGCAGCACA 58.759 50.000 0.00 0.00 0.00 4.57
2606 2637 0.524862 CCCATTGTCAGAAGCAGCAC 59.475 55.000 0.00 0.00 0.00 4.40
2607 2638 0.609957 CCCCATTGTCAGAAGCAGCA 60.610 55.000 0.00 0.00 0.00 4.41
2608 2639 0.322816 TCCCCATTGTCAGAAGCAGC 60.323 55.000 0.00 0.00 0.00 5.25
2609 2640 2.022195 CATCCCCATTGTCAGAAGCAG 58.978 52.381 0.00 0.00 0.00 4.24
2610 2641 1.634973 TCATCCCCATTGTCAGAAGCA 59.365 47.619 0.00 0.00 0.00 3.91
2611 2642 2.425143 TCATCCCCATTGTCAGAAGC 57.575 50.000 0.00 0.00 0.00 3.86
2612 2643 3.635373 CCAATCATCCCCATTGTCAGAAG 59.365 47.826 0.00 0.00 30.40 2.85
2613 2644 3.634504 CCAATCATCCCCATTGTCAGAA 58.365 45.455 0.00 0.00 30.40 3.02
2614 2645 2.687614 GCCAATCATCCCCATTGTCAGA 60.688 50.000 0.00 0.00 30.40 3.27
2615 2646 1.684983 GCCAATCATCCCCATTGTCAG 59.315 52.381 0.00 0.00 30.40 3.51
2616 2647 1.006878 TGCCAATCATCCCCATTGTCA 59.993 47.619 0.00 0.00 30.40 3.58
2617 2648 1.779221 TGCCAATCATCCCCATTGTC 58.221 50.000 0.00 0.00 30.40 3.18
2618 2649 2.250921 TTGCCAATCATCCCCATTGT 57.749 45.000 0.00 0.00 30.40 2.71
2619 2650 3.472652 CATTTGCCAATCATCCCCATTG 58.527 45.455 0.00 0.00 0.00 2.82
2620 2651 2.440253 CCATTTGCCAATCATCCCCATT 59.560 45.455 0.00 0.00 0.00 3.16
2621 2652 2.051692 CCATTTGCCAATCATCCCCAT 58.948 47.619 0.00 0.00 0.00 4.00
2622 2653 1.498264 CCATTTGCCAATCATCCCCA 58.502 50.000 0.00 0.00 0.00 4.96
2623 2654 0.760572 CCCATTTGCCAATCATCCCC 59.239 55.000 0.00 0.00 0.00 4.81
2624 2655 1.139455 CACCCATTTGCCAATCATCCC 59.861 52.381 0.00 0.00 0.00 3.85
2625 2656 1.139455 CCACCCATTTGCCAATCATCC 59.861 52.381 0.00 0.00 0.00 3.51
2626 2657 2.101917 CTCCACCCATTTGCCAATCATC 59.898 50.000 0.00 0.00 0.00 2.92
2627 2658 2.112998 CTCCACCCATTTGCCAATCAT 58.887 47.619 0.00 0.00 0.00 2.45
2628 2659 1.559368 CTCCACCCATTTGCCAATCA 58.441 50.000 0.00 0.00 0.00 2.57
2629 2660 0.826062 CCTCCACCCATTTGCCAATC 59.174 55.000 0.00 0.00 0.00 2.67
2630 2661 0.413037 TCCTCCACCCATTTGCCAAT 59.587 50.000 0.00 0.00 0.00 3.16
2631 2662 0.251742 CTCCTCCACCCATTTGCCAA 60.252 55.000 0.00 0.00 0.00 4.52
2632 2663 1.139498 TCTCCTCCACCCATTTGCCA 61.139 55.000 0.00 0.00 0.00 4.92
2633 2664 0.039618 TTCTCCTCCACCCATTTGCC 59.960 55.000 0.00 0.00 0.00 4.52
2634 2665 1.004745 TCTTCTCCTCCACCCATTTGC 59.995 52.381 0.00 0.00 0.00 3.68
2635 2666 2.356535 CCTCTTCTCCTCCACCCATTTG 60.357 54.545 0.00 0.00 0.00 2.32
2636 2667 1.918957 CCTCTTCTCCTCCACCCATTT 59.081 52.381 0.00 0.00 0.00 2.32
2637 2668 1.081174 TCCTCTTCTCCTCCACCCATT 59.919 52.381 0.00 0.00 0.00 3.16
2638 2669 0.719015 TCCTCTTCTCCTCCACCCAT 59.281 55.000 0.00 0.00 0.00 4.00
2639 2670 0.491823 TTCCTCTTCTCCTCCACCCA 59.508 55.000 0.00 0.00 0.00 4.51
2640 2671 1.199615 CTTCCTCTTCTCCTCCACCC 58.800 60.000 0.00 0.00 0.00 4.61
2641 2672 2.239681 TCTTCCTCTTCTCCTCCACC 57.760 55.000 0.00 0.00 0.00 4.61
2642 2673 3.370104 TCATCTTCCTCTTCTCCTCCAC 58.630 50.000 0.00 0.00 0.00 4.02
2643 2674 3.765432 TCATCTTCCTCTTCTCCTCCA 57.235 47.619 0.00 0.00 0.00 3.86
2644 2675 3.324556 CCATCATCTTCCTCTTCTCCTCC 59.675 52.174 0.00 0.00 0.00 4.30
2645 2676 3.244181 GCCATCATCTTCCTCTTCTCCTC 60.244 52.174 0.00 0.00 0.00 3.71
2646 2677 2.705127 GCCATCATCTTCCTCTTCTCCT 59.295 50.000 0.00 0.00 0.00 3.69
2647 2678 2.437281 TGCCATCATCTTCCTCTTCTCC 59.563 50.000 0.00 0.00 0.00 3.71
2648 2679 3.834489 TGCCATCATCTTCCTCTTCTC 57.166 47.619 0.00 0.00 0.00 2.87
2649 2680 3.681034 CGTTGCCATCATCTTCCTCTTCT 60.681 47.826 0.00 0.00 0.00 2.85
2650 2681 2.611292 CGTTGCCATCATCTTCCTCTTC 59.389 50.000 0.00 0.00 0.00 2.87
2651 2682 2.636830 CGTTGCCATCATCTTCCTCTT 58.363 47.619 0.00 0.00 0.00 2.85
2652 2683 1.134280 CCGTTGCCATCATCTTCCTCT 60.134 52.381 0.00 0.00 0.00 3.69
2653 2684 1.303309 CCGTTGCCATCATCTTCCTC 58.697 55.000 0.00 0.00 0.00 3.71
2654 2685 0.107017 CCCGTTGCCATCATCTTCCT 60.107 55.000 0.00 0.00 0.00 3.36
2655 2686 1.103398 CCCCGTTGCCATCATCTTCC 61.103 60.000 0.00 0.00 0.00 3.46
2656 2687 0.107214 TCCCCGTTGCCATCATCTTC 60.107 55.000 0.00 0.00 0.00 2.87
2657 2688 0.552848 ATCCCCGTTGCCATCATCTT 59.447 50.000 0.00 0.00 0.00 2.40
2658 2689 0.552848 AATCCCCGTTGCCATCATCT 59.447 50.000 0.00 0.00 0.00 2.90
2659 2690 1.067516 CAAATCCCCGTTGCCATCATC 59.932 52.381 0.00 0.00 0.00 2.92
2660 2691 1.113788 CAAATCCCCGTTGCCATCAT 58.886 50.000 0.00 0.00 0.00 2.45
2661 2692 1.603236 GCAAATCCCCGTTGCCATCA 61.603 55.000 0.00 0.00 44.53 3.07
2662 2693 1.141665 GCAAATCCCCGTTGCCATC 59.858 57.895 0.00 0.00 44.53 3.51
2663 2694 3.297904 GCAAATCCCCGTTGCCAT 58.702 55.556 0.00 0.00 44.53 4.40
2667 2698 1.079888 GCCAAGCAAATCCCCGTTG 60.080 57.895 0.00 0.00 0.00 4.10
2668 2699 1.532794 TGCCAAGCAAATCCCCGTT 60.533 52.632 0.00 0.00 34.76 4.44
2669 2700 1.978617 CTGCCAAGCAAATCCCCGT 60.979 57.895 0.00 0.00 38.41 5.28
2670 2701 0.679640 TACTGCCAAGCAAATCCCCG 60.680 55.000 0.00 0.00 38.41 5.73
2934 2965 0.034896 GTTTCTCCTCCAACTCCGCA 59.965 55.000 0.00 0.00 0.00 5.69
3055 3086 2.968574 AGATTATCACCACAGGAGCGAT 59.031 45.455 0.00 0.00 0.00 4.58
3101 3132 1.660264 CCAAAAGGACAAACGCCGC 60.660 57.895 0.00 0.00 0.00 6.53
3102 3133 1.007849 CCCAAAAGGACAAACGCCG 60.008 57.895 0.00 0.00 38.24 6.46
3220 3252 9.533831 AAGTATTCAACATTATTCCTGAAACCT 57.466 29.630 0.00 0.00 31.94 3.50
3246 3287 0.736053 GTGTGTTGCAAAACGGAGGA 59.264 50.000 14.95 0.00 0.00 3.71
3370 3411 5.464030 ACGGTGTTAGTTCAGTGAGTTAT 57.536 39.130 0.00 0.00 0.00 1.89
3444 3487 7.606839 ACTGTAACCTAGTTGCTTTTAATCCTC 59.393 37.037 0.00 0.00 0.00 3.71
3588 3981 7.375053 GGTAGTCCAAGAATCTGCTCTATAAG 58.625 42.308 0.00 0.00 0.00 1.73
3615 4008 6.899114 AGCCGTTAGTTAAGACAAAATCAAG 58.101 36.000 0.00 0.00 0.00 3.02
3616 4009 6.347079 CGAGCCGTTAGTTAAGACAAAATCAA 60.347 38.462 0.00 0.00 0.00 2.57
3619 4012 4.142966 GCGAGCCGTTAGTTAAGACAAAAT 60.143 41.667 0.00 0.00 0.00 1.82
3620 4013 3.184986 GCGAGCCGTTAGTTAAGACAAAA 59.815 43.478 0.00 0.00 0.00 2.44
3621 4014 2.733026 GCGAGCCGTTAGTTAAGACAAA 59.267 45.455 0.00 0.00 0.00 2.83
3623 4016 1.730121 CGCGAGCCGTTAGTTAAGACA 60.730 52.381 0.00 0.00 0.00 3.41
3624 4017 0.912528 CGCGAGCCGTTAGTTAAGAC 59.087 55.000 0.00 0.00 0.00 3.01
3626 4019 1.189403 CTCGCGAGCCGTTAGTTAAG 58.811 55.000 25.07 0.00 38.35 1.85
3627 4020 0.179156 CCTCGCGAGCCGTTAGTTAA 60.179 55.000 30.49 0.00 38.35 2.01
3628 4021 1.430632 CCTCGCGAGCCGTTAGTTA 59.569 57.895 30.49 0.00 38.35 2.24
3630 4023 4.493747 GCCTCGCGAGCCGTTAGT 62.494 66.667 30.49 0.00 38.35 2.24
3642 4035 0.808453 TTAAAAGATCCGCCGCCTCG 60.808 55.000 0.00 0.00 0.00 4.63
3643 4036 1.375551 TTTAAAAGATCCGCCGCCTC 58.624 50.000 0.00 0.00 0.00 4.70
3644 4037 1.828979 TTTTAAAAGATCCGCCGCCT 58.171 45.000 0.00 0.00 0.00 5.52
3645 4038 2.098443 TCATTTTAAAAGATCCGCCGCC 59.902 45.455 6.79 0.00 0.00 6.13
3646 4039 3.414549 TCATTTTAAAAGATCCGCCGC 57.585 42.857 6.79 0.00 0.00 6.53
3648 4041 4.978580 GCAGATCATTTTAAAAGATCCGCC 59.021 41.667 22.24 14.45 39.10 6.13
3649 4042 4.978580 GGCAGATCATTTTAAAAGATCCGC 59.021 41.667 23.37 23.37 39.99 5.54
3650 4043 5.207768 CGGCAGATCATTTTAAAAGATCCG 58.792 41.667 22.84 19.23 39.10 4.18
3651 4044 5.523369 CCGGCAGATCATTTTAAAAGATCC 58.477 41.667 22.84 14.78 39.10 3.36
3652 4045 4.978580 GCCGGCAGATCATTTTAAAAGATC 59.021 41.667 24.80 20.91 38.70 2.75
3653 4046 4.202151 GGCCGGCAGATCATTTTAAAAGAT 60.202 41.667 30.85 9.13 0.00 2.40
3654 4047 3.130340 GGCCGGCAGATCATTTTAAAAGA 59.870 43.478 30.85 4.93 0.00 2.52
3655 4048 3.447742 GGCCGGCAGATCATTTTAAAAG 58.552 45.455 30.85 0.00 0.00 2.27
3657 4050 1.754226 GGGCCGGCAGATCATTTTAAA 59.246 47.619 30.85 0.00 0.00 1.52
3659 4052 0.257328 TGGGCCGGCAGATCATTTTA 59.743 50.000 30.85 0.00 0.00 1.52
3660 4053 1.000233 TGGGCCGGCAGATCATTTT 60.000 52.632 30.85 0.00 0.00 1.82
3663 4056 4.552365 CGTGGGCCGGCAGATCAT 62.552 66.667 30.85 0.00 0.00 2.45
3679 4072 4.778143 AAAGGGGGCTGCTACGCG 62.778 66.667 3.53 3.53 0.00 6.01
3680 4073 2.824489 GAAAGGGGGCTGCTACGC 60.824 66.667 0.00 1.67 0.00 4.42
3681 4074 0.394352 AATGAAAGGGGGCTGCTACG 60.394 55.000 0.00 0.00 0.00 3.51
3685 4078 1.347378 TGAAAAATGAAAGGGGGCTGC 59.653 47.619 0.00 0.00 0.00 5.25
3686 4079 3.602483 CATGAAAAATGAAAGGGGGCTG 58.398 45.455 0.00 0.00 0.00 4.85
3687 4080 2.026915 GCATGAAAAATGAAAGGGGGCT 60.027 45.455 0.00 0.00 0.00 5.19
3688 4081 2.290197 TGCATGAAAAATGAAAGGGGGC 60.290 45.455 0.00 0.00 0.00 5.80
3689 4082 3.008266 ACTGCATGAAAAATGAAAGGGGG 59.992 43.478 0.00 0.00 0.00 5.40
3690 4083 3.998341 CACTGCATGAAAAATGAAAGGGG 59.002 43.478 0.00 0.00 0.00 4.79
3691 4084 3.434299 GCACTGCATGAAAAATGAAAGGG 59.566 43.478 0.00 0.00 0.00 3.95
3693 4086 5.917541 AAGCACTGCATGAAAAATGAAAG 57.082 34.783 3.30 0.00 0.00 2.62
3869 4475 7.929941 TTCTTGCCAACAAACCTTTAAATTT 57.070 28.000 0.00 0.00 34.74 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.