Multiple sequence alignment - TraesCS3B01G204500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G204500 chr3B 100.000 4020 0 0 1 4020 239250088 239246069 0.000000e+00 7424.0
1 TraesCS3B01G204500 chr3B 86.175 217 24 4 1461 1671 605028648 605028864 3.130000e-56 230.0
2 TraesCS3B01G204500 chr3A 93.672 3034 139 16 1006 4020 192818469 192815470 0.000000e+00 4490.0
3 TraesCS3B01G204500 chr3A 90.778 553 17 8 486 1015 192823400 192822859 0.000000e+00 708.0
4 TraesCS3B01G204500 chr3A 94.286 105 6 0 236 340 192825025 192824921 1.160000e-35 161.0
5 TraesCS3B01G204500 chr3A 94.595 74 4 0 267 340 192824796 192824723 9.130000e-22 115.0
6 TraesCS3B01G204500 chr3A 91.379 58 5 0 343 400 192824676 192824619 3.330000e-11 80.5
7 TraesCS3B01G204500 chr3D 94.726 2863 106 14 405 3245 162179136 162176297 0.000000e+00 4409.0
8 TraesCS3B01G204500 chr3D 92.491 799 50 6 3229 4020 162176203 162175408 0.000000e+00 1134.0
9 TraesCS3B01G204500 chr3D 97.143 105 3 0 236 340 162179335 162179231 1.150000e-40 178.0
10 TraesCS3B01G204500 chr3D 95.000 40 2 0 343 382 162179182 162179143 3.350000e-06 63.9
11 TraesCS3B01G204500 chr4D 90.493 284 27 0 1425 1708 450197933 450198216 3.790000e-100 375.0
12 TraesCS3B01G204500 chr4D 74.852 676 127 29 3270 3910 421933554 421932887 2.380000e-67 267.0
13 TraesCS3B01G204500 chr4D 92.105 38 3 0 363 400 400935203 400935166 2.000000e-03 54.7
14 TraesCS3B01G204500 chr4B 94.068 236 4 3 1 236 616938569 616938794 2.300000e-92 350.0
15 TraesCS3B01G204500 chr4B 80.365 219 28 8 20 235 616937710 616937504 6.960000e-33 152.0
16 TraesCS3B01G204500 chr2B 88.542 288 30 2 1415 1701 380511072 380510787 2.970000e-91 346.0
17 TraesCS3B01G204500 chr2B 91.837 245 17 2 1745 1987 380510789 380510546 4.980000e-89 339.0
18 TraesCS3B01G204500 chr2B 78.526 312 63 4 2359 2668 95760732 95761041 6.810000e-48 202.0
19 TraesCS3B01G204500 chr7B 75.387 711 132 30 3341 4020 6750683 6749985 1.820000e-78 303.0
20 TraesCS3B01G204500 chr7B 100.000 33 0 0 368 400 116390288 116390256 1.210000e-05 62.1
21 TraesCS3B01G204500 chr1D 74.532 801 155 34 3255 4015 165197671 165196880 1.820000e-78 303.0
22 TraesCS3B01G204500 chr5D 83.913 230 35 1 1474 1703 561620189 561620416 6.760000e-53 219.0
23 TraesCS3B01G204500 chr2A 78.846 312 62 4 2359 2668 61467959 61468268 1.460000e-49 207.0
24 TraesCS3B01G204500 chr2A 100.000 29 0 0 369 397 24652287 24652315 2.000000e-03 54.7
25 TraesCS3B01G204500 chr2A 100.000 29 0 0 369 397 24680354 24680382 2.000000e-03 54.7
26 TraesCS3B01G204500 chr2A 100.000 29 0 0 369 397 24682020 24682048 2.000000e-03 54.7
27 TraesCS3B01G204500 chr2A 100.000 29 0 0 369 397 24707531 24707559 2.000000e-03 54.7
28 TraesCS3B01G204500 chr2A 100.000 29 0 0 369 397 25656557 25656529 2.000000e-03 54.7
29 TraesCS3B01G204500 chr2D 77.564 312 66 4 2359 2668 60945685 60945994 6.860000e-43 185.0
30 TraesCS3B01G204500 chr2D 88.889 117 13 0 114 230 633876798 633876914 1.160000e-30 145.0
31 TraesCS3B01G204500 chr2D 77.315 216 44 5 18 230 563387869 563388082 5.460000e-24 122.0
32 TraesCS3B01G204500 chr2D 81.416 113 21 0 118 230 11244110 11244222 4.280000e-15 93.5
33 TraesCS3B01G204500 chr6B 76.330 376 69 15 3525 3884 388952835 388953206 2.470000e-42 183.0
34 TraesCS3B01G204500 chr7A 79.724 217 43 1 16 231 418669102 418669318 5.380000e-34 156.0
35 TraesCS3B01G204500 chr7A 88.889 72 8 0 159 230 447492923 447492994 5.530000e-14 89.8
36 TraesCS3B01G204500 chr5A 76.498 217 48 2 16 230 688290150 688289935 9.130000e-22 115.0
37 TraesCS3B01G204500 chr1A 85.455 110 14 2 122 230 580035069 580035177 3.280000e-21 113.0
38 TraesCS3B01G204500 chrUn 100.000 29 0 0 369 397 371796248 371796276 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G204500 chr3B 239246069 239250088 4019 True 7424.000 7424 100.0000 1 4020 1 chr3B.!!$R1 4019
1 TraesCS3B01G204500 chr3A 192815470 192818469 2999 True 4490.000 4490 93.6720 1006 4020 1 chr3A.!!$R1 3014
2 TraesCS3B01G204500 chr3A 192822859 192825025 2166 True 266.125 708 92.7595 236 1015 4 chr3A.!!$R2 779
3 TraesCS3B01G204500 chr3D 162175408 162179335 3927 True 1446.225 4409 94.8400 236 4020 4 chr3D.!!$R1 3784
4 TraesCS3B01G204500 chr4D 421932887 421933554 667 True 267.000 267 74.8520 3270 3910 1 chr4D.!!$R2 640
5 TraesCS3B01G204500 chr2B 380510546 380511072 526 True 342.500 346 90.1895 1415 1987 2 chr2B.!!$R1 572
6 TraesCS3B01G204500 chr7B 6749985 6750683 698 True 303.000 303 75.3870 3341 4020 1 chr7B.!!$R1 679
7 TraesCS3B01G204500 chr1D 165196880 165197671 791 True 303.000 303 74.5320 3255 4015 1 chr1D.!!$R1 760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 185 0.179000 CAGGGATTCGAAGGTGGAGG 59.821 60.0 3.35 0.0 0.00 4.30 F
1177 2636 0.107897 GACATGGATGGCACGTGGTA 60.108 55.0 18.88 0.0 35.34 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1207 2666 0.602638 ACGATCAGAAGCGCCAACAA 60.603 50.0 2.29 0.0 37.98 2.83 R
3169 4650 0.111442 CGTGTTACGCTTCACCAACG 60.111 55.0 0.00 0.0 33.65 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.253452 GCAACAACAGCCAGCGAG 59.747 61.111 0.00 0.00 0.00 5.03
18 19 2.949106 CAACAACAGCCAGCGAGG 59.051 61.111 0.00 0.00 41.84 4.63
19 20 1.597854 CAACAACAGCCAGCGAGGA 60.598 57.895 2.12 0.00 41.22 3.71
20 21 1.148273 AACAACAGCCAGCGAGGAA 59.852 52.632 2.12 0.00 41.22 3.36
21 22 0.886490 AACAACAGCCAGCGAGGAAG 60.886 55.000 2.12 0.00 41.22 3.46
22 23 1.004560 CAACAGCCAGCGAGGAAGA 60.005 57.895 2.12 0.00 41.22 2.87
23 24 0.392193 CAACAGCCAGCGAGGAAGAT 60.392 55.000 2.12 0.00 41.22 2.40
24 25 1.134699 CAACAGCCAGCGAGGAAGATA 60.135 52.381 2.12 0.00 41.22 1.98
25 26 0.749649 ACAGCCAGCGAGGAAGATAG 59.250 55.000 2.12 0.00 41.22 2.08
26 27 1.035923 CAGCCAGCGAGGAAGATAGA 58.964 55.000 2.12 0.00 41.22 1.98
27 28 1.617850 CAGCCAGCGAGGAAGATAGAT 59.382 52.381 2.12 0.00 41.22 1.98
28 29 2.822561 CAGCCAGCGAGGAAGATAGATA 59.177 50.000 2.12 0.00 41.22 1.98
29 30 3.446873 CAGCCAGCGAGGAAGATAGATAT 59.553 47.826 2.12 0.00 41.22 1.63
30 31 3.446873 AGCCAGCGAGGAAGATAGATATG 59.553 47.826 2.12 0.00 41.22 1.78
31 32 3.445450 GCCAGCGAGGAAGATAGATATGA 59.555 47.826 2.12 0.00 41.22 2.15
32 33 4.676723 GCCAGCGAGGAAGATAGATATGAC 60.677 50.000 2.12 0.00 41.22 3.06
33 34 4.460731 CCAGCGAGGAAGATAGATATGACA 59.539 45.833 0.00 0.00 41.22 3.58
34 35 5.126869 CCAGCGAGGAAGATAGATATGACAT 59.873 44.000 0.00 0.00 41.22 3.06
35 36 6.035217 CAGCGAGGAAGATAGATATGACATG 58.965 44.000 0.00 0.00 0.00 3.21
36 37 5.714333 AGCGAGGAAGATAGATATGACATGT 59.286 40.000 0.00 0.00 0.00 3.21
37 38 6.887002 AGCGAGGAAGATAGATATGACATGTA 59.113 38.462 0.00 0.00 0.00 2.29
38 39 7.066887 AGCGAGGAAGATAGATATGACATGTAG 59.933 40.741 0.00 0.00 0.00 2.74
39 40 7.680827 GCGAGGAAGATAGATATGACATGTAGG 60.681 44.444 0.00 0.00 0.00 3.18
40 41 7.201776 CGAGGAAGATAGATATGACATGTAGGG 60.202 44.444 0.00 0.00 0.00 3.53
41 42 6.382570 AGGAAGATAGATATGACATGTAGGGC 59.617 42.308 0.00 0.00 0.00 5.19
42 43 6.382570 GGAAGATAGATATGACATGTAGGGCT 59.617 42.308 0.00 0.00 0.00 5.19
43 44 6.788598 AGATAGATATGACATGTAGGGCTG 57.211 41.667 0.00 0.00 0.00 4.85
44 45 3.692257 AGATATGACATGTAGGGCTGC 57.308 47.619 0.00 0.00 0.00 5.25
45 46 3.246301 AGATATGACATGTAGGGCTGCT 58.754 45.455 0.00 0.00 0.00 4.24
46 47 3.649981 AGATATGACATGTAGGGCTGCTT 59.350 43.478 0.00 0.00 0.00 3.91
47 48 4.840680 AGATATGACATGTAGGGCTGCTTA 59.159 41.667 0.00 0.00 0.00 3.09
48 49 2.988010 TGACATGTAGGGCTGCTTAG 57.012 50.000 0.00 0.00 0.00 2.18
49 50 2.187958 TGACATGTAGGGCTGCTTAGT 58.812 47.619 0.00 0.00 0.00 2.24
50 51 2.168521 TGACATGTAGGGCTGCTTAGTC 59.831 50.000 0.00 0.00 0.00 2.59
51 52 1.137086 ACATGTAGGGCTGCTTAGTCG 59.863 52.381 0.00 0.00 0.00 4.18
52 53 0.753262 ATGTAGGGCTGCTTAGTCGG 59.247 55.000 0.00 0.00 0.00 4.79
53 54 0.613853 TGTAGGGCTGCTTAGTCGGT 60.614 55.000 0.00 0.00 0.00 4.69
54 55 0.179108 GTAGGGCTGCTTAGTCGGTG 60.179 60.000 0.00 0.00 0.00 4.94
55 56 0.323999 TAGGGCTGCTTAGTCGGTGA 60.324 55.000 0.00 0.00 0.00 4.02
56 57 1.153549 GGGCTGCTTAGTCGGTGAG 60.154 63.158 0.00 0.00 0.00 3.51
57 58 1.605058 GGGCTGCTTAGTCGGTGAGA 61.605 60.000 0.00 0.00 0.00 3.27
58 59 0.179124 GGCTGCTTAGTCGGTGAGAG 60.179 60.000 0.00 0.00 0.00 3.20
59 60 0.811915 GCTGCTTAGTCGGTGAGAGA 59.188 55.000 0.00 0.00 0.00 3.10
60 61 1.202582 GCTGCTTAGTCGGTGAGAGAA 59.797 52.381 0.00 0.00 0.00 2.87
61 62 2.869897 CTGCTTAGTCGGTGAGAGAAC 58.130 52.381 0.00 0.00 0.00 3.01
62 63 1.544691 TGCTTAGTCGGTGAGAGAACC 59.455 52.381 0.00 0.00 36.82 3.62
63 64 1.819903 GCTTAGTCGGTGAGAGAACCT 59.180 52.381 0.00 0.00 38.14 3.50
64 65 3.015327 GCTTAGTCGGTGAGAGAACCTA 58.985 50.000 0.00 0.00 38.14 3.08
65 66 3.181498 GCTTAGTCGGTGAGAGAACCTAC 60.181 52.174 0.00 0.00 38.14 3.18
66 67 2.883122 AGTCGGTGAGAGAACCTACT 57.117 50.000 0.00 0.00 40.44 2.57
67 68 2.438411 AGTCGGTGAGAGAACCTACTG 58.562 52.381 0.21 0.00 42.83 2.74
68 69 2.040012 AGTCGGTGAGAGAACCTACTGA 59.960 50.000 0.21 0.00 42.83 3.41
69 70 3.018149 GTCGGTGAGAGAACCTACTGAT 58.982 50.000 0.00 0.00 38.14 2.90
70 71 3.065648 GTCGGTGAGAGAACCTACTGATC 59.934 52.174 0.00 0.00 38.14 2.92
71 72 2.359531 CGGTGAGAGAACCTACTGATCC 59.640 54.545 0.00 0.00 38.14 3.36
72 73 2.696187 GGTGAGAGAACCTACTGATCCC 59.304 54.545 0.00 0.00 37.24 3.85
73 74 2.359531 GTGAGAGAACCTACTGATCCCG 59.640 54.545 0.00 0.00 0.00 5.14
74 75 1.957877 GAGAGAACCTACTGATCCCGG 59.042 57.143 0.00 0.00 0.00 5.73
75 76 1.288335 AGAGAACCTACTGATCCCGGT 59.712 52.381 0.00 0.00 35.70 5.28
76 77 1.682323 GAGAACCTACTGATCCCGGTC 59.318 57.143 0.00 0.00 33.18 4.79
77 78 1.006758 AGAACCTACTGATCCCGGTCA 59.993 52.381 0.00 0.00 33.18 4.02
85 86 2.919043 ATCCCGGTCAGGATTGCC 59.081 61.111 0.00 0.00 44.61 4.52
86 87 1.694169 ATCCCGGTCAGGATTGCCT 60.694 57.895 0.00 0.00 44.61 4.75
87 88 1.281925 ATCCCGGTCAGGATTGCCTT 61.282 55.000 0.00 0.00 44.61 4.35
88 89 1.000896 CCCGGTCAGGATTGCCTTT 60.001 57.895 0.00 0.00 43.90 3.11
89 90 0.611896 CCCGGTCAGGATTGCCTTTT 60.612 55.000 0.00 0.00 43.90 2.27
90 91 1.256812 CCGGTCAGGATTGCCTTTTT 58.743 50.000 0.00 0.00 43.90 1.94
111 112 6.862944 TTTTTCTGCGACAAACAAGTTTAG 57.137 33.333 0.00 0.00 0.00 1.85
112 113 4.545823 TTCTGCGACAAACAAGTTTAGG 57.454 40.909 0.00 0.00 0.00 2.69
113 114 3.799366 TCTGCGACAAACAAGTTTAGGA 58.201 40.909 0.00 0.00 0.00 2.94
114 115 4.385825 TCTGCGACAAACAAGTTTAGGAT 58.614 39.130 0.00 0.00 0.00 3.24
115 116 4.819630 TCTGCGACAAACAAGTTTAGGATT 59.180 37.500 0.00 0.00 0.00 3.01
116 117 5.992829 TCTGCGACAAACAAGTTTAGGATTA 59.007 36.000 0.00 0.00 0.00 1.75
117 118 6.147164 TCTGCGACAAACAAGTTTAGGATTAG 59.853 38.462 0.00 0.00 0.00 1.73
118 119 5.761234 TGCGACAAACAAGTTTAGGATTAGT 59.239 36.000 0.00 0.00 0.00 2.24
119 120 6.077838 GCGACAAACAAGTTTAGGATTAGTG 58.922 40.000 0.00 0.00 0.00 2.74
120 121 6.077838 CGACAAACAAGTTTAGGATTAGTGC 58.922 40.000 0.00 0.00 0.00 4.40
121 122 6.293190 CGACAAACAAGTTTAGGATTAGTGCA 60.293 38.462 0.00 0.00 0.00 4.57
122 123 6.970484 ACAAACAAGTTTAGGATTAGTGCAG 58.030 36.000 0.00 0.00 0.00 4.41
123 124 6.016276 ACAAACAAGTTTAGGATTAGTGCAGG 60.016 38.462 0.00 0.00 0.00 4.85
124 125 4.589908 ACAAGTTTAGGATTAGTGCAGGG 58.410 43.478 0.00 0.00 0.00 4.45
125 126 4.042934 ACAAGTTTAGGATTAGTGCAGGGT 59.957 41.667 0.00 0.00 0.00 4.34
126 127 4.929146 AGTTTAGGATTAGTGCAGGGTT 57.071 40.909 0.00 0.00 0.00 4.11
127 128 4.589908 AGTTTAGGATTAGTGCAGGGTTG 58.410 43.478 0.00 0.00 0.00 3.77
128 129 4.288626 AGTTTAGGATTAGTGCAGGGTTGA 59.711 41.667 0.00 0.00 0.00 3.18
129 130 5.044846 AGTTTAGGATTAGTGCAGGGTTGAT 60.045 40.000 0.00 0.00 0.00 2.57
130 131 3.567478 AGGATTAGTGCAGGGTTGATC 57.433 47.619 0.00 0.00 0.00 2.92
131 132 3.118531 AGGATTAGTGCAGGGTTGATCT 58.881 45.455 0.00 0.00 0.00 2.75
132 133 3.525199 AGGATTAGTGCAGGGTTGATCTT 59.475 43.478 0.00 0.00 0.00 2.40
133 134 4.018050 AGGATTAGTGCAGGGTTGATCTTT 60.018 41.667 0.00 0.00 0.00 2.52
134 135 5.191722 AGGATTAGTGCAGGGTTGATCTTTA 59.808 40.000 0.00 0.00 0.00 1.85
135 136 6.064717 GGATTAGTGCAGGGTTGATCTTTAT 58.935 40.000 0.00 0.00 0.00 1.40
136 137 6.205658 GGATTAGTGCAGGGTTGATCTTTATC 59.794 42.308 0.00 0.00 0.00 1.75
137 138 3.535561 AGTGCAGGGTTGATCTTTATCG 58.464 45.455 0.00 0.00 34.60 2.92
138 139 2.614057 GTGCAGGGTTGATCTTTATCGG 59.386 50.000 0.00 0.00 34.60 4.18
139 140 2.222027 GCAGGGTTGATCTTTATCGGG 58.778 52.381 0.00 0.00 34.60 5.14
140 141 2.158813 GCAGGGTTGATCTTTATCGGGA 60.159 50.000 0.00 0.00 34.60 5.14
141 142 3.496870 GCAGGGTTGATCTTTATCGGGAT 60.497 47.826 0.00 0.00 34.60 3.85
142 143 4.718961 CAGGGTTGATCTTTATCGGGATT 58.281 43.478 0.00 0.00 34.60 3.01
143 144 5.744887 GCAGGGTTGATCTTTATCGGGATTA 60.745 44.000 0.00 0.00 34.60 1.75
144 145 5.934625 CAGGGTTGATCTTTATCGGGATTAG 59.065 44.000 0.00 0.00 34.60 1.73
145 146 5.844516 AGGGTTGATCTTTATCGGGATTAGA 59.155 40.000 0.00 0.00 34.60 2.10
146 147 6.014156 AGGGTTGATCTTTATCGGGATTAGAG 60.014 42.308 0.00 0.00 34.60 2.43
147 148 6.014499 GGGTTGATCTTTATCGGGATTAGAGA 60.014 42.308 0.00 0.00 34.60 3.10
148 149 7.093992 GGTTGATCTTTATCGGGATTAGAGAG 58.906 42.308 0.00 0.00 34.60 3.20
149 150 6.842437 TGATCTTTATCGGGATTAGAGAGG 57.158 41.667 0.00 0.00 34.60 3.69
150 151 6.315714 TGATCTTTATCGGGATTAGAGAGGT 58.684 40.000 0.00 0.00 34.60 3.85
151 152 6.782988 TGATCTTTATCGGGATTAGAGAGGTT 59.217 38.462 0.00 0.00 34.60 3.50
152 153 7.948447 TGATCTTTATCGGGATTAGAGAGGTTA 59.052 37.037 0.00 0.00 34.60 2.85
153 154 7.762588 TCTTTATCGGGATTAGAGAGGTTAG 57.237 40.000 0.00 0.00 0.00 2.34
154 155 6.720288 TCTTTATCGGGATTAGAGAGGTTAGG 59.280 42.308 0.00 0.00 0.00 2.69
155 156 4.743705 ATCGGGATTAGAGAGGTTAGGA 57.256 45.455 0.00 0.00 0.00 2.94
156 157 4.743705 TCGGGATTAGAGAGGTTAGGAT 57.256 45.455 0.00 0.00 0.00 3.24
157 158 5.855338 TCGGGATTAGAGAGGTTAGGATA 57.145 43.478 0.00 0.00 0.00 2.59
158 159 5.568392 TCGGGATTAGAGAGGTTAGGATAC 58.432 45.833 0.00 0.00 0.00 2.24
159 160 4.705991 CGGGATTAGAGAGGTTAGGATACC 59.294 50.000 0.00 0.00 38.53 2.73
160 161 4.705991 GGGATTAGAGAGGTTAGGATACCG 59.294 50.000 0.00 0.00 43.21 4.02
161 162 5.516238 GGGATTAGAGAGGTTAGGATACCGA 60.516 48.000 0.00 0.00 43.21 4.69
162 163 6.189133 GGATTAGAGAGGTTAGGATACCGAT 58.811 44.000 0.00 0.00 43.21 4.18
163 164 6.664384 GGATTAGAGAGGTTAGGATACCGATT 59.336 42.308 0.00 0.00 43.21 3.34
164 165 7.178805 GGATTAGAGAGGTTAGGATACCGATTT 59.821 40.741 0.00 0.00 43.21 2.17
165 166 7.521871 TTAGAGAGGTTAGGATACCGATTTC 57.478 40.000 0.00 0.00 43.21 2.17
166 167 5.455872 AGAGAGGTTAGGATACCGATTTCA 58.544 41.667 0.00 0.00 43.21 2.69
167 168 5.536916 AGAGAGGTTAGGATACCGATTTCAG 59.463 44.000 0.00 0.00 43.21 3.02
168 169 4.589374 AGAGGTTAGGATACCGATTTCAGG 59.411 45.833 0.00 0.00 43.21 3.86
169 170 3.646637 AGGTTAGGATACCGATTTCAGGG 59.353 47.826 0.00 0.00 43.21 4.45
170 171 3.644738 GGTTAGGATACCGATTTCAGGGA 59.355 47.826 0.00 0.00 37.17 4.20
171 172 4.286291 GGTTAGGATACCGATTTCAGGGAT 59.714 45.833 0.00 0.00 34.31 3.85
172 173 5.221864 GGTTAGGATACCGATTTCAGGGATT 60.222 44.000 0.00 0.00 31.02 3.01
173 174 4.625607 AGGATACCGATTTCAGGGATTC 57.374 45.455 0.00 0.00 31.02 2.52
174 175 3.006967 AGGATACCGATTTCAGGGATTCG 59.993 47.826 0.00 0.00 32.57 3.34
175 176 3.006537 GGATACCGATTTCAGGGATTCGA 59.993 47.826 0.00 0.00 31.02 3.71
176 177 4.502604 GGATACCGATTTCAGGGATTCGAA 60.503 45.833 0.00 0.00 31.02 3.71
177 178 2.906354 ACCGATTTCAGGGATTCGAAG 58.094 47.619 3.35 0.00 33.59 3.79
178 179 2.213499 CCGATTTCAGGGATTCGAAGG 58.787 52.381 3.35 0.00 33.59 3.46
179 180 2.420129 CCGATTTCAGGGATTCGAAGGT 60.420 50.000 3.35 0.00 33.59 3.50
180 181 2.609459 CGATTTCAGGGATTCGAAGGTG 59.391 50.000 3.35 0.00 33.59 4.00
181 182 2.489938 TTTCAGGGATTCGAAGGTGG 57.510 50.000 3.35 0.00 0.00 4.61
182 183 1.651737 TTCAGGGATTCGAAGGTGGA 58.348 50.000 3.35 0.00 0.00 4.02
183 184 1.195115 TCAGGGATTCGAAGGTGGAG 58.805 55.000 3.35 0.00 0.00 3.86
184 185 0.179000 CAGGGATTCGAAGGTGGAGG 59.821 60.000 3.35 0.00 0.00 4.30
185 186 0.252742 AGGGATTCGAAGGTGGAGGT 60.253 55.000 3.35 0.00 0.00 3.85
186 187 0.618981 GGGATTCGAAGGTGGAGGTT 59.381 55.000 3.35 0.00 0.00 3.50
187 188 1.004394 GGGATTCGAAGGTGGAGGTTT 59.996 52.381 3.35 0.00 0.00 3.27
188 189 2.084546 GGATTCGAAGGTGGAGGTTTG 58.915 52.381 3.35 0.00 0.00 2.93
189 190 2.290071 GGATTCGAAGGTGGAGGTTTGA 60.290 50.000 3.35 0.00 0.00 2.69
190 191 3.610911 GATTCGAAGGTGGAGGTTTGAT 58.389 45.455 3.35 0.00 0.00 2.57
191 192 3.502123 TTCGAAGGTGGAGGTTTGATT 57.498 42.857 0.00 0.00 0.00 2.57
192 193 3.053831 TCGAAGGTGGAGGTTTGATTC 57.946 47.619 0.00 0.00 0.00 2.52
193 194 2.084546 CGAAGGTGGAGGTTTGATTCC 58.915 52.381 0.00 0.00 0.00 3.01
194 195 2.084546 GAAGGTGGAGGTTTGATTCCG 58.915 52.381 0.00 0.00 36.22 4.30
195 196 1.358152 AGGTGGAGGTTTGATTCCGA 58.642 50.000 0.00 0.00 36.22 4.55
196 197 1.003233 AGGTGGAGGTTTGATTCCGAC 59.997 52.381 0.00 0.00 36.22 4.79
197 198 1.076332 GTGGAGGTTTGATTCCGACG 58.924 55.000 0.00 0.00 36.22 5.12
198 199 0.970640 TGGAGGTTTGATTCCGACGA 59.029 50.000 0.00 0.00 36.22 4.20
199 200 1.067142 TGGAGGTTTGATTCCGACGAG 60.067 52.381 0.00 0.00 36.22 4.18
200 201 1.000145 GAGGTTTGATTCCGACGAGC 59.000 55.000 0.00 0.00 0.00 5.03
201 202 0.608640 AGGTTTGATTCCGACGAGCT 59.391 50.000 0.00 0.00 0.00 4.09
202 203 1.000145 GGTTTGATTCCGACGAGCTC 59.000 55.000 2.73 2.73 0.00 4.09
203 204 1.404315 GGTTTGATTCCGACGAGCTCT 60.404 52.381 12.85 0.00 0.00 4.09
204 205 2.159282 GGTTTGATTCCGACGAGCTCTA 60.159 50.000 12.85 0.00 0.00 2.43
205 206 2.846039 TTGATTCCGACGAGCTCTAC 57.154 50.000 12.85 4.59 0.00 2.59
206 207 0.656259 TGATTCCGACGAGCTCTACG 59.344 55.000 12.85 16.00 0.00 3.51
207 208 0.935898 GATTCCGACGAGCTCTACGA 59.064 55.000 23.76 10.64 34.70 3.43
208 209 0.938713 ATTCCGACGAGCTCTACGAG 59.061 55.000 23.76 16.14 34.70 4.18
209 210 0.390866 TTCCGACGAGCTCTACGAGT 60.391 55.000 23.76 10.34 31.39 4.18
210 211 0.390866 TCCGACGAGCTCTACGAGTT 60.391 55.000 23.76 0.00 31.39 3.01
211 212 0.447011 CCGACGAGCTCTACGAGTTT 59.553 55.000 23.76 0.00 31.39 2.66
212 213 1.662629 CCGACGAGCTCTACGAGTTTA 59.337 52.381 23.76 0.00 31.39 2.01
213 214 2.094894 CCGACGAGCTCTACGAGTTTAA 59.905 50.000 23.76 0.00 31.39 1.52
214 215 3.343990 CGACGAGCTCTACGAGTTTAAG 58.656 50.000 19.51 0.22 31.39 1.85
215 216 3.682921 GACGAGCTCTACGAGTTTAAGG 58.317 50.000 12.85 0.00 31.39 2.69
216 217 3.080319 ACGAGCTCTACGAGTTTAAGGT 58.920 45.455 12.85 0.00 31.39 3.50
217 218 3.505293 ACGAGCTCTACGAGTTTAAGGTT 59.495 43.478 12.85 0.00 31.39 3.50
218 219 4.022503 ACGAGCTCTACGAGTTTAAGGTTT 60.023 41.667 12.85 0.00 31.39 3.27
219 220 5.182001 ACGAGCTCTACGAGTTTAAGGTTTA 59.818 40.000 12.85 0.00 31.39 2.01
220 221 6.088824 CGAGCTCTACGAGTTTAAGGTTTAA 58.911 40.000 12.85 0.00 31.39 1.52
221 222 6.583806 CGAGCTCTACGAGTTTAAGGTTTAAA 59.416 38.462 12.85 0.00 31.39 1.52
222 223 7.115378 CGAGCTCTACGAGTTTAAGGTTTAAAA 59.885 37.037 12.85 0.00 31.39 1.52
223 224 8.843885 AGCTCTACGAGTTTAAGGTTTAAAAT 57.156 30.769 0.00 0.00 31.39 1.82
224 225 9.933723 AGCTCTACGAGTTTAAGGTTTAAAATA 57.066 29.630 0.00 0.00 31.39 1.40
231 232 9.737025 CGAGTTTAAGGTTTAAAATAGACTTCG 57.263 33.333 0.00 0.00 0.00 3.79
232 233 9.539139 GAGTTTAAGGTTTAAAATAGACTTCGC 57.461 33.333 0.00 0.00 0.00 4.70
233 234 9.281371 AGTTTAAGGTTTAAAATAGACTTCGCT 57.719 29.630 0.00 0.00 0.00 4.93
234 235 9.539139 GTTTAAGGTTTAAAATAGACTTCGCTC 57.461 33.333 0.00 0.00 0.00 5.03
240 241 2.969628 AATAGACTTCGCTCCAGGTG 57.030 50.000 0.00 0.00 0.00 4.00
244 245 0.603569 GACTTCGCTCCAGGTGAGAA 59.396 55.000 7.39 7.39 44.42 2.87
255 256 1.761784 CAGGTGAGAATGGGAGAGAGG 59.238 57.143 0.00 0.00 0.00 3.69
340 341 1.686052 TGCATTTTGAAAGAGGCGGTT 59.314 42.857 0.00 0.00 0.00 4.44
341 342 2.061028 GCATTTTGAAAGAGGCGGTTG 58.939 47.619 0.00 0.00 0.00 3.77
353 598 0.391263 GGCGGTTGAGAAATCTCCGT 60.391 55.000 7.91 0.00 42.20 4.69
392 637 8.131847 AGTACTCCTTCCGTCTTAAAATAAGT 57.868 34.615 0.00 0.00 0.00 2.24
400 645 7.884816 TCCGTCTTAAAATAAGTGTCTCAAG 57.115 36.000 0.00 0.00 0.00 3.02
401 646 6.872020 TCCGTCTTAAAATAAGTGTCTCAAGG 59.128 38.462 0.00 0.00 0.00 3.61
456 1889 7.023575 GTGTGTTGCTAATTGAACCATCTTAG 58.976 38.462 0.00 0.00 0.00 2.18
583 2033 4.093952 CCTGCGTCGCCAAGCAAG 62.094 66.667 15.88 3.76 43.31 4.01
763 2218 3.248171 CGTTCTCGCGCTGCTACC 61.248 66.667 5.56 0.00 0.00 3.18
872 2327 2.005451 CCTGTCACTCACTTATGCTGC 58.995 52.381 0.00 0.00 0.00 5.25
873 2328 2.613725 CCTGTCACTCACTTATGCTGCA 60.614 50.000 4.13 4.13 0.00 4.41
874 2329 2.671888 CTGTCACTCACTTATGCTGCAG 59.328 50.000 10.11 10.11 0.00 4.41
888 2343 2.029020 TGCTGCAGTACTAGTGAACAGG 60.029 50.000 16.64 0.00 0.00 4.00
1049 2504 5.030820 ACTACAAACTATACCTTGCCTCCT 58.969 41.667 0.00 0.00 0.00 3.69
1153 2612 1.262417 TACACTCCTCACGGCAATGA 58.738 50.000 0.00 0.00 0.00 2.57
1176 2635 1.377202 GACATGGATGGCACGTGGT 60.377 57.895 18.88 3.37 35.34 4.16
1177 2636 0.107897 GACATGGATGGCACGTGGTA 60.108 55.000 18.88 0.00 35.34 3.25
1178 2637 0.326595 ACATGGATGGCACGTGGTAA 59.673 50.000 18.88 0.00 0.00 2.85
1179 2638 1.271652 ACATGGATGGCACGTGGTAAA 60.272 47.619 18.88 0.00 0.00 2.01
1180 2639 1.401552 CATGGATGGCACGTGGTAAAG 59.598 52.381 18.88 0.00 0.00 1.85
1181 2640 0.322098 TGGATGGCACGTGGTAAAGG 60.322 55.000 18.88 0.00 0.00 3.11
1182 2641 1.654023 GGATGGCACGTGGTAAAGGC 61.654 60.000 18.88 2.44 0.00 4.35
1183 2642 0.958382 GATGGCACGTGGTAAAGGCA 60.958 55.000 18.88 8.96 40.91 4.75
1184 2643 1.241315 ATGGCACGTGGTAAAGGCAC 61.241 55.000 18.88 0.00 39.42 5.01
1185 2644 2.622962 GGCACGTGGTAAAGGCACC 61.623 63.158 18.88 2.24 39.20 5.01
1186 2645 2.622962 GCACGTGGTAAAGGCACCC 61.623 63.158 18.88 0.00 37.84 4.61
1187 2646 1.969589 CACGTGGTAAAGGCACCCC 60.970 63.158 7.95 0.00 37.84 4.95
1222 2681 0.030638 GCTTTTGTTGGCGCTTCTGA 59.969 50.000 7.64 0.00 0.00 3.27
1560 3028 3.381333 CTGCATCGAGCTGCTGGGA 62.381 63.158 7.01 4.47 45.94 4.37
1578 3046 1.495878 GATACTCCGTCGACGAGCTA 58.504 55.000 37.65 21.98 43.02 3.32
2153 3623 3.984633 GTGGACGTGAAGAAGAAGAAGAG 59.015 47.826 0.00 0.00 0.00 2.85
2259 3729 0.803740 GCGCCACCGTTGGTAAATAA 59.196 50.000 0.00 0.00 45.98 1.40
2319 3789 0.724785 GACCGTGCGCAAAAGCTAAC 60.725 55.000 14.00 0.00 38.13 2.34
2328 3798 1.527696 CAAAAGCTAACGATGCTGCG 58.472 50.000 0.00 0.00 41.03 5.18
2443 3913 4.498520 CTGCGCGTGGACTCGGAT 62.499 66.667 8.43 0.00 0.00 4.18
2589 4059 2.512286 CGTGATCCAGCGCACCAT 60.512 61.111 11.47 0.00 0.00 3.55
2768 4238 1.183549 GGTGGTCATGGAGTCGTACT 58.816 55.000 0.00 0.00 0.00 2.73
2774 4244 0.249120 CATGGAGTCGTACTTGGGCA 59.751 55.000 0.00 0.00 0.00 5.36
3050 4520 3.488355 AATGGTCAATTTGGGGATGGA 57.512 42.857 0.00 0.00 0.00 3.41
3173 4654 3.328382 TCAGGGGAAGAATGTACGTTG 57.672 47.619 4.71 0.00 0.00 4.10
3174 4655 2.027561 TCAGGGGAAGAATGTACGTTGG 60.028 50.000 4.71 0.00 0.00 3.77
3179 4660 3.435671 GGGAAGAATGTACGTTGGTGAAG 59.564 47.826 4.71 0.00 0.00 3.02
3234 4825 2.760092 ACAATAGGGCGCATGAATTGTT 59.240 40.909 18.16 7.86 37.46 2.83
3405 5009 4.096682 TCGGGCGGGATTTAATAAAAGTTG 59.903 41.667 0.00 0.00 0.00 3.16
3431 5036 4.762251 GCTGTGGAGGTAGACTTTGAAATT 59.238 41.667 0.00 0.00 0.00 1.82
3522 5132 1.833630 AGAGGAGATTGCCGTTGATGA 59.166 47.619 0.00 0.00 0.00 2.92
3635 5246 5.366477 TCATAACAGGATGGATGAAGTAGCA 59.634 40.000 0.00 0.00 43.62 3.49
3687 5301 7.231467 AGAGAGTGCCATAAAACCTAAAAAGA 58.769 34.615 0.00 0.00 0.00 2.52
3712 5326 6.769134 TCTGTAGGACAACGATTCAATCTA 57.231 37.500 0.00 0.00 0.00 1.98
3715 5329 6.280643 TGTAGGACAACGATTCAATCTATGG 58.719 40.000 0.00 0.00 0.00 2.74
3746 5362 4.037446 TGGCTGAATGTTGGTCAACTAAAC 59.963 41.667 13.96 5.19 41.67 2.01
3775 5392 4.425180 TGTCCAAAGTTAGGTGTAGCAA 57.575 40.909 0.00 0.00 0.00 3.91
3794 5411 8.257306 TGTAGCAAAGATGTGTATGTTGAGATA 58.743 33.333 0.00 0.00 0.00 1.98
3803 5420 6.206498 TGTGTATGTTGAGATAGATACGTGC 58.794 40.000 0.00 0.00 0.00 5.34
3807 5424 3.641436 TGTTGAGATAGATACGTGCCCAT 59.359 43.478 0.00 0.00 0.00 4.00
3819 5436 1.403647 CGTGCCCATACAAGAGACGAA 60.404 52.381 0.00 0.00 0.00 3.85
3863 5487 8.792830 ATAAAGTTGGGGTATCATCGATTATG 57.207 34.615 0.00 0.00 36.88 1.90
3884 5508 1.464997 GAGAAGGTTGTCCAACATCGC 59.535 52.381 11.89 7.57 42.85 4.58
3891 5515 1.002624 GTCCAACATCGCCTGGGAA 60.003 57.895 0.00 0.00 33.19 3.97
3928 5553 2.436469 CATGCCGTGCCAGCAGTA 60.436 61.111 0.00 0.00 44.90 2.74
3945 5570 3.803715 GCAGTATCGGTGCATATTGGACT 60.804 47.826 0.00 0.00 38.83 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.253452 CTCGCTGGCTGTTGTTGC 59.747 61.111 0.00 0.00 0.00 4.17
1 2 1.165907 TTCCTCGCTGGCTGTTGTTG 61.166 55.000 0.00 0.00 35.26 3.33
2 3 0.886490 CTTCCTCGCTGGCTGTTGTT 60.886 55.000 0.00 0.00 35.26 2.83
3 4 1.302033 CTTCCTCGCTGGCTGTTGT 60.302 57.895 0.00 0.00 35.26 3.32
4 5 0.392193 ATCTTCCTCGCTGGCTGTTG 60.392 55.000 0.00 0.00 35.26 3.33
5 6 1.137872 CTATCTTCCTCGCTGGCTGTT 59.862 52.381 0.00 0.00 35.26 3.16
6 7 0.749649 CTATCTTCCTCGCTGGCTGT 59.250 55.000 0.00 0.00 35.26 4.40
7 8 1.035923 TCTATCTTCCTCGCTGGCTG 58.964 55.000 0.00 0.00 35.26 4.85
8 9 2.008242 ATCTATCTTCCTCGCTGGCT 57.992 50.000 0.00 0.00 35.26 4.75
9 10 3.445450 TCATATCTATCTTCCTCGCTGGC 59.555 47.826 0.00 0.00 35.26 4.85
10 11 4.460731 TGTCATATCTATCTTCCTCGCTGG 59.539 45.833 0.00 0.00 37.10 4.85
11 12 5.635417 TGTCATATCTATCTTCCTCGCTG 57.365 43.478 0.00 0.00 0.00 5.18
12 13 5.714333 ACATGTCATATCTATCTTCCTCGCT 59.286 40.000 0.00 0.00 0.00 4.93
13 14 5.960113 ACATGTCATATCTATCTTCCTCGC 58.040 41.667 0.00 0.00 0.00 5.03
14 15 7.201776 CCCTACATGTCATATCTATCTTCCTCG 60.202 44.444 0.00 0.00 0.00 4.63
15 16 7.417342 GCCCTACATGTCATATCTATCTTCCTC 60.417 44.444 0.00 0.00 0.00 3.71
16 17 6.382570 GCCCTACATGTCATATCTATCTTCCT 59.617 42.308 0.00 0.00 0.00 3.36
17 18 6.382570 AGCCCTACATGTCATATCTATCTTCC 59.617 42.308 0.00 0.00 0.00 3.46
18 19 7.264221 CAGCCCTACATGTCATATCTATCTTC 58.736 42.308 0.00 0.00 0.00 2.87
19 20 6.351711 GCAGCCCTACATGTCATATCTATCTT 60.352 42.308 0.00 0.00 0.00 2.40
20 21 5.128499 GCAGCCCTACATGTCATATCTATCT 59.872 44.000 0.00 0.00 0.00 1.98
21 22 5.128499 AGCAGCCCTACATGTCATATCTATC 59.872 44.000 0.00 0.00 0.00 2.08
22 23 5.028802 AGCAGCCCTACATGTCATATCTAT 58.971 41.667 0.00 0.00 0.00 1.98
23 24 4.420206 AGCAGCCCTACATGTCATATCTA 58.580 43.478 0.00 0.00 0.00 1.98
24 25 3.246301 AGCAGCCCTACATGTCATATCT 58.754 45.455 0.00 0.00 0.00 1.98
25 26 3.692257 AGCAGCCCTACATGTCATATC 57.308 47.619 0.00 0.00 0.00 1.63
26 27 4.594920 ACTAAGCAGCCCTACATGTCATAT 59.405 41.667 0.00 0.00 0.00 1.78
27 28 3.967326 ACTAAGCAGCCCTACATGTCATA 59.033 43.478 0.00 0.00 0.00 2.15
28 29 2.774234 ACTAAGCAGCCCTACATGTCAT 59.226 45.455 0.00 0.00 0.00 3.06
29 30 2.168521 GACTAAGCAGCCCTACATGTCA 59.831 50.000 0.00 0.00 0.00 3.58
30 31 2.799917 CGACTAAGCAGCCCTACATGTC 60.800 54.545 0.00 0.00 0.00 3.06
31 32 1.137086 CGACTAAGCAGCCCTACATGT 59.863 52.381 2.69 2.69 0.00 3.21
32 33 1.539065 CCGACTAAGCAGCCCTACATG 60.539 57.143 0.00 0.00 0.00 3.21
33 34 0.753262 CCGACTAAGCAGCCCTACAT 59.247 55.000 0.00 0.00 0.00 2.29
34 35 0.613853 ACCGACTAAGCAGCCCTACA 60.614 55.000 0.00 0.00 0.00 2.74
35 36 0.179108 CACCGACTAAGCAGCCCTAC 60.179 60.000 0.00 0.00 0.00 3.18
36 37 0.323999 TCACCGACTAAGCAGCCCTA 60.324 55.000 0.00 0.00 0.00 3.53
37 38 1.608717 CTCACCGACTAAGCAGCCCT 61.609 60.000 0.00 0.00 0.00 5.19
38 39 1.153549 CTCACCGACTAAGCAGCCC 60.154 63.158 0.00 0.00 0.00 5.19
39 40 0.179124 CTCTCACCGACTAAGCAGCC 60.179 60.000 0.00 0.00 0.00 4.85
40 41 0.811915 TCTCTCACCGACTAAGCAGC 59.188 55.000 0.00 0.00 0.00 5.25
41 42 2.416162 GGTTCTCTCACCGACTAAGCAG 60.416 54.545 0.00 0.00 0.00 4.24
42 43 1.544691 GGTTCTCTCACCGACTAAGCA 59.455 52.381 0.00 0.00 0.00 3.91
43 44 1.819903 AGGTTCTCTCACCGACTAAGC 59.180 52.381 0.00 0.00 42.33 3.09
44 45 4.619437 GTAGGTTCTCTCACCGACTAAG 57.381 50.000 0.00 0.00 42.33 2.18
47 48 2.883122 AGTAGGTTCTCTCACCGACT 57.117 50.000 0.22 0.22 45.21 4.18
48 49 2.434428 TCAGTAGGTTCTCTCACCGAC 58.566 52.381 0.00 0.00 42.33 4.79
49 50 2.873094 TCAGTAGGTTCTCTCACCGA 57.127 50.000 0.00 0.00 42.33 4.69
50 51 2.359531 GGATCAGTAGGTTCTCTCACCG 59.640 54.545 0.00 0.00 42.33 4.94
51 52 2.696187 GGGATCAGTAGGTTCTCTCACC 59.304 54.545 0.00 0.00 37.04 4.02
52 53 2.359531 CGGGATCAGTAGGTTCTCTCAC 59.640 54.545 0.00 0.00 0.00 3.51
53 54 2.656002 CGGGATCAGTAGGTTCTCTCA 58.344 52.381 0.00 0.00 0.00 3.27
54 55 1.957877 CCGGGATCAGTAGGTTCTCTC 59.042 57.143 0.00 0.00 0.00 3.20
55 56 1.288335 ACCGGGATCAGTAGGTTCTCT 59.712 52.381 6.32 0.00 32.17 3.10
56 57 1.682323 GACCGGGATCAGTAGGTTCTC 59.318 57.143 6.32 0.00 37.07 2.87
57 58 1.006758 TGACCGGGATCAGTAGGTTCT 59.993 52.381 6.32 0.00 37.07 3.01
58 59 1.409427 CTGACCGGGATCAGTAGGTTC 59.591 57.143 12.79 0.00 41.12 3.62
59 60 1.486211 CTGACCGGGATCAGTAGGTT 58.514 55.000 12.79 0.00 41.12 3.50
60 61 0.397254 CCTGACCGGGATCAGTAGGT 60.397 60.000 18.02 0.00 43.99 3.08
61 62 0.106167 TCCTGACCGGGATCAGTAGG 60.106 60.000 18.02 6.85 43.99 3.18
62 63 2.002505 ATCCTGACCGGGATCAGTAG 57.997 55.000 18.02 6.65 43.99 2.57
63 64 2.039418 CAATCCTGACCGGGATCAGTA 58.961 52.381 18.02 5.68 44.50 2.74
64 65 0.833287 CAATCCTGACCGGGATCAGT 59.167 55.000 18.02 1.23 44.50 3.41
65 66 0.533755 GCAATCCTGACCGGGATCAG 60.534 60.000 13.81 13.81 44.50 2.90
66 67 1.526887 GCAATCCTGACCGGGATCA 59.473 57.895 6.32 0.00 44.50 2.92
67 68 1.227973 GGCAATCCTGACCGGGATC 60.228 63.158 6.32 0.00 44.50 3.36
68 69 1.281925 AAGGCAATCCTGACCGGGAT 61.282 55.000 6.32 4.57 46.96 3.85
69 70 1.497309 AAAGGCAATCCTGACCGGGA 61.497 55.000 6.32 0.00 43.40 5.14
70 71 0.611896 AAAAGGCAATCCTGACCGGG 60.612 55.000 6.32 0.00 43.40 5.73
71 72 1.256812 AAAAAGGCAATCCTGACCGG 58.743 50.000 0.00 0.00 43.40 5.28
88 89 5.802956 CCTAAACTTGTTTGTCGCAGAAAAA 59.197 36.000 8.79 0.00 42.13 1.94
89 90 5.124138 TCCTAAACTTGTTTGTCGCAGAAAA 59.876 36.000 8.79 0.00 39.69 2.29
90 91 4.636648 TCCTAAACTTGTTTGTCGCAGAAA 59.363 37.500 8.79 0.00 39.69 2.52
91 92 4.193090 TCCTAAACTTGTTTGTCGCAGAA 58.807 39.130 8.79 0.00 39.69 3.02
92 93 3.799366 TCCTAAACTTGTTTGTCGCAGA 58.201 40.909 8.79 0.00 0.00 4.26
93 94 4.749245 ATCCTAAACTTGTTTGTCGCAG 57.251 40.909 8.79 0.00 0.00 5.18
94 95 5.761234 ACTAATCCTAAACTTGTTTGTCGCA 59.239 36.000 8.79 0.00 0.00 5.10
95 96 6.077838 CACTAATCCTAAACTTGTTTGTCGC 58.922 40.000 8.79 0.00 0.00 5.19
96 97 6.077838 GCACTAATCCTAAACTTGTTTGTCG 58.922 40.000 8.79 0.00 0.00 4.35
97 98 6.966021 TGCACTAATCCTAAACTTGTTTGTC 58.034 36.000 8.79 0.00 0.00 3.18
98 99 6.016276 CCTGCACTAATCCTAAACTTGTTTGT 60.016 38.462 8.79 0.00 0.00 2.83
99 100 6.381801 CCTGCACTAATCCTAAACTTGTTTG 58.618 40.000 8.79 0.32 0.00 2.93
100 101 5.476945 CCCTGCACTAATCCTAAACTTGTTT 59.523 40.000 4.14 4.14 0.00 2.83
101 102 5.010282 CCCTGCACTAATCCTAAACTTGTT 58.990 41.667 0.00 0.00 0.00 2.83
102 103 4.042934 ACCCTGCACTAATCCTAAACTTGT 59.957 41.667 0.00 0.00 0.00 3.16
103 104 4.589908 ACCCTGCACTAATCCTAAACTTG 58.410 43.478 0.00 0.00 0.00 3.16
104 105 4.929146 ACCCTGCACTAATCCTAAACTT 57.071 40.909 0.00 0.00 0.00 2.66
105 106 4.288626 TCAACCCTGCACTAATCCTAAACT 59.711 41.667 0.00 0.00 0.00 2.66
106 107 4.585879 TCAACCCTGCACTAATCCTAAAC 58.414 43.478 0.00 0.00 0.00 2.01
107 108 4.919774 TCAACCCTGCACTAATCCTAAA 57.080 40.909 0.00 0.00 0.00 1.85
108 109 4.721776 AGATCAACCCTGCACTAATCCTAA 59.278 41.667 0.00 0.00 0.00 2.69
109 110 4.298626 AGATCAACCCTGCACTAATCCTA 58.701 43.478 0.00 0.00 0.00 2.94
110 111 3.118531 AGATCAACCCTGCACTAATCCT 58.881 45.455 0.00 0.00 0.00 3.24
111 112 3.567478 AGATCAACCCTGCACTAATCC 57.433 47.619 0.00 0.00 0.00 3.01
112 113 6.073548 CGATAAAGATCAACCCTGCACTAATC 60.074 42.308 0.00 0.00 31.78 1.75
113 114 5.760253 CGATAAAGATCAACCCTGCACTAAT 59.240 40.000 0.00 0.00 31.78 1.73
114 115 5.116180 CGATAAAGATCAACCCTGCACTAA 58.884 41.667 0.00 0.00 31.78 2.24
115 116 4.442893 CCGATAAAGATCAACCCTGCACTA 60.443 45.833 0.00 0.00 31.78 2.74
116 117 3.535561 CGATAAAGATCAACCCTGCACT 58.464 45.455 0.00 0.00 31.78 4.40
117 118 2.614057 CCGATAAAGATCAACCCTGCAC 59.386 50.000 0.00 0.00 31.78 4.57
118 119 2.421388 CCCGATAAAGATCAACCCTGCA 60.421 50.000 0.00 0.00 31.78 4.41
119 120 2.158813 TCCCGATAAAGATCAACCCTGC 60.159 50.000 0.00 0.00 31.78 4.85
120 121 3.838244 TCCCGATAAAGATCAACCCTG 57.162 47.619 0.00 0.00 31.78 4.45
121 122 5.844516 TCTAATCCCGATAAAGATCAACCCT 59.155 40.000 0.00 0.00 31.78 4.34
122 123 6.014499 TCTCTAATCCCGATAAAGATCAACCC 60.014 42.308 0.00 0.00 31.78 4.11
123 124 6.994221 TCTCTAATCCCGATAAAGATCAACC 58.006 40.000 0.00 0.00 31.78 3.77
124 125 7.093992 CCTCTCTAATCCCGATAAAGATCAAC 58.906 42.308 0.00 0.00 31.78 3.18
125 126 6.782988 ACCTCTCTAATCCCGATAAAGATCAA 59.217 38.462 0.00 0.00 31.78 2.57
126 127 6.315714 ACCTCTCTAATCCCGATAAAGATCA 58.684 40.000 0.00 0.00 31.78 2.92
127 128 6.844097 ACCTCTCTAATCCCGATAAAGATC 57.156 41.667 0.00 0.00 0.00 2.75
128 129 7.397761 CCTAACCTCTCTAATCCCGATAAAGAT 59.602 40.741 0.00 0.00 0.00 2.40
129 130 6.720288 CCTAACCTCTCTAATCCCGATAAAGA 59.280 42.308 0.00 0.00 0.00 2.52
130 131 6.720288 TCCTAACCTCTCTAATCCCGATAAAG 59.280 42.308 0.00 0.00 0.00 1.85
131 132 6.617538 TCCTAACCTCTCTAATCCCGATAAA 58.382 40.000 0.00 0.00 0.00 1.40
132 133 6.210172 TCCTAACCTCTCTAATCCCGATAA 57.790 41.667 0.00 0.00 0.00 1.75
133 134 5.855338 TCCTAACCTCTCTAATCCCGATA 57.145 43.478 0.00 0.00 0.00 2.92
134 135 4.743705 TCCTAACCTCTCTAATCCCGAT 57.256 45.455 0.00 0.00 0.00 4.18
135 136 4.743705 ATCCTAACCTCTCTAATCCCGA 57.256 45.455 0.00 0.00 0.00 5.14
136 137 4.705991 GGTATCCTAACCTCTCTAATCCCG 59.294 50.000 0.00 0.00 36.53 5.14
137 138 4.705991 CGGTATCCTAACCTCTCTAATCCC 59.294 50.000 0.00 0.00 37.39 3.85
138 139 5.568392 TCGGTATCCTAACCTCTCTAATCC 58.432 45.833 0.00 0.00 37.39 3.01
139 140 7.706100 AATCGGTATCCTAACCTCTCTAATC 57.294 40.000 0.00 0.00 37.39 1.75
140 141 7.728981 TGAAATCGGTATCCTAACCTCTCTAAT 59.271 37.037 0.00 0.00 37.39 1.73
141 142 7.064866 TGAAATCGGTATCCTAACCTCTCTAA 58.935 38.462 0.00 0.00 37.39 2.10
142 143 6.607970 TGAAATCGGTATCCTAACCTCTCTA 58.392 40.000 0.00 0.00 37.39 2.43
143 144 5.455872 TGAAATCGGTATCCTAACCTCTCT 58.544 41.667 0.00 0.00 37.39 3.10
144 145 5.279056 CCTGAAATCGGTATCCTAACCTCTC 60.279 48.000 0.00 0.00 37.39 3.20
145 146 4.589374 CCTGAAATCGGTATCCTAACCTCT 59.411 45.833 0.00 0.00 37.39 3.69
146 147 4.262506 CCCTGAAATCGGTATCCTAACCTC 60.263 50.000 0.00 0.00 37.39 3.85
147 148 3.646637 CCCTGAAATCGGTATCCTAACCT 59.353 47.826 0.00 0.00 37.39 3.50
148 149 3.644738 TCCCTGAAATCGGTATCCTAACC 59.355 47.826 0.00 0.00 36.08 2.85
149 150 4.950205 TCCCTGAAATCGGTATCCTAAC 57.050 45.455 0.00 0.00 0.00 2.34
150 151 5.279306 CGAATCCCTGAAATCGGTATCCTAA 60.279 44.000 0.00 0.00 0.00 2.69
151 152 4.219944 CGAATCCCTGAAATCGGTATCCTA 59.780 45.833 0.00 0.00 0.00 2.94
152 153 3.006967 CGAATCCCTGAAATCGGTATCCT 59.993 47.826 0.00 0.00 0.00 3.24
153 154 3.006537 TCGAATCCCTGAAATCGGTATCC 59.993 47.826 0.00 0.00 36.05 2.59
154 155 4.252971 TCGAATCCCTGAAATCGGTATC 57.747 45.455 0.00 0.00 36.05 2.24
155 156 4.503296 CCTTCGAATCCCTGAAATCGGTAT 60.503 45.833 0.00 0.00 36.05 2.73
156 157 3.181469 CCTTCGAATCCCTGAAATCGGTA 60.181 47.826 0.00 0.00 36.05 4.02
157 158 2.420129 CCTTCGAATCCCTGAAATCGGT 60.420 50.000 0.00 0.00 36.05 4.69
158 159 2.213499 CCTTCGAATCCCTGAAATCGG 58.787 52.381 0.00 0.00 36.05 4.18
159 160 2.609459 CACCTTCGAATCCCTGAAATCG 59.391 50.000 0.00 0.00 36.67 3.34
160 161 2.945668 CCACCTTCGAATCCCTGAAATC 59.054 50.000 0.00 0.00 0.00 2.17
161 162 2.576191 TCCACCTTCGAATCCCTGAAAT 59.424 45.455 0.00 0.00 0.00 2.17
162 163 1.982226 TCCACCTTCGAATCCCTGAAA 59.018 47.619 0.00 0.00 0.00 2.69
163 164 1.555075 CTCCACCTTCGAATCCCTGAA 59.445 52.381 0.00 0.00 0.00 3.02
164 165 1.195115 CTCCACCTTCGAATCCCTGA 58.805 55.000 0.00 0.00 0.00 3.86
165 166 0.179000 CCTCCACCTTCGAATCCCTG 59.821 60.000 0.00 0.00 0.00 4.45
166 167 0.252742 ACCTCCACCTTCGAATCCCT 60.253 55.000 0.00 0.00 0.00 4.20
167 168 0.618981 AACCTCCACCTTCGAATCCC 59.381 55.000 0.00 0.00 0.00 3.85
168 169 2.084546 CAAACCTCCACCTTCGAATCC 58.915 52.381 0.00 0.00 0.00 3.01
169 170 3.053831 TCAAACCTCCACCTTCGAATC 57.946 47.619 0.00 0.00 0.00 2.52
170 171 3.721087 ATCAAACCTCCACCTTCGAAT 57.279 42.857 0.00 0.00 0.00 3.34
171 172 3.408634 GAATCAAACCTCCACCTTCGAA 58.591 45.455 0.00 0.00 0.00 3.71
172 173 2.290071 GGAATCAAACCTCCACCTTCGA 60.290 50.000 0.00 0.00 0.00 3.71
173 174 2.084546 GGAATCAAACCTCCACCTTCG 58.915 52.381 0.00 0.00 0.00 3.79
174 175 2.084546 CGGAATCAAACCTCCACCTTC 58.915 52.381 0.00 0.00 0.00 3.46
175 176 1.702957 TCGGAATCAAACCTCCACCTT 59.297 47.619 0.00 0.00 0.00 3.50
176 177 1.003233 GTCGGAATCAAACCTCCACCT 59.997 52.381 0.00 0.00 0.00 4.00
177 178 1.450025 GTCGGAATCAAACCTCCACC 58.550 55.000 0.00 0.00 0.00 4.61
178 179 1.076332 CGTCGGAATCAAACCTCCAC 58.924 55.000 0.00 0.00 0.00 4.02
179 180 0.970640 TCGTCGGAATCAAACCTCCA 59.029 50.000 0.00 0.00 0.00 3.86
180 181 1.641577 CTCGTCGGAATCAAACCTCC 58.358 55.000 0.00 0.00 0.00 4.30
181 182 1.000145 GCTCGTCGGAATCAAACCTC 59.000 55.000 0.00 0.00 0.00 3.85
182 183 0.608640 AGCTCGTCGGAATCAAACCT 59.391 50.000 0.00 0.00 0.00 3.50
183 184 1.000145 GAGCTCGTCGGAATCAAACC 59.000 55.000 0.00 0.00 0.00 3.27
184 185 1.997669 AGAGCTCGTCGGAATCAAAC 58.002 50.000 8.37 0.00 0.00 2.93
185 186 2.477357 CGTAGAGCTCGTCGGAATCAAA 60.477 50.000 20.18 0.00 0.00 2.69
186 187 1.063616 CGTAGAGCTCGTCGGAATCAA 59.936 52.381 20.18 0.00 0.00 2.57
187 188 0.656259 CGTAGAGCTCGTCGGAATCA 59.344 55.000 20.18 0.00 0.00 2.57
188 189 0.935898 TCGTAGAGCTCGTCGGAATC 59.064 55.000 24.71 5.87 0.00 2.52
189 190 3.076104 TCGTAGAGCTCGTCGGAAT 57.924 52.632 24.71 4.52 0.00 3.01
190 191 4.604114 TCGTAGAGCTCGTCGGAA 57.396 55.556 24.71 10.72 0.00 4.30
205 206 9.737025 CGAAGTCTATTTTAAACCTTAAACTCG 57.263 33.333 0.00 0.00 0.00 4.18
206 207 9.539139 GCGAAGTCTATTTTAAACCTTAAACTC 57.461 33.333 0.00 0.00 0.00 3.01
207 208 9.281371 AGCGAAGTCTATTTTAAACCTTAAACT 57.719 29.630 0.00 0.00 0.00 2.66
208 209 9.539139 GAGCGAAGTCTATTTTAAACCTTAAAC 57.461 33.333 0.00 0.00 0.00 2.01
209 210 8.724229 GGAGCGAAGTCTATTTTAAACCTTAAA 58.276 33.333 0.00 0.00 0.00 1.52
210 211 7.879160 TGGAGCGAAGTCTATTTTAAACCTTAA 59.121 33.333 0.00 0.00 0.00 1.85
211 212 7.388437 TGGAGCGAAGTCTATTTTAAACCTTA 58.612 34.615 0.00 0.00 0.00 2.69
212 213 6.235664 TGGAGCGAAGTCTATTTTAAACCTT 58.764 36.000 0.00 0.00 0.00 3.50
213 214 5.801380 TGGAGCGAAGTCTATTTTAAACCT 58.199 37.500 0.00 0.00 0.00 3.50
214 215 5.064834 CCTGGAGCGAAGTCTATTTTAAACC 59.935 44.000 0.00 0.00 0.00 3.27
215 216 5.642491 ACCTGGAGCGAAGTCTATTTTAAAC 59.358 40.000 0.00 0.00 0.00 2.01
216 217 5.642063 CACCTGGAGCGAAGTCTATTTTAAA 59.358 40.000 0.00 0.00 0.00 1.52
217 218 5.046878 TCACCTGGAGCGAAGTCTATTTTAA 60.047 40.000 0.00 0.00 0.00 1.52
218 219 4.464951 TCACCTGGAGCGAAGTCTATTTTA 59.535 41.667 0.00 0.00 0.00 1.52
219 220 3.260884 TCACCTGGAGCGAAGTCTATTTT 59.739 43.478 0.00 0.00 0.00 1.82
220 221 2.832129 TCACCTGGAGCGAAGTCTATTT 59.168 45.455 0.00 0.00 0.00 1.40
221 222 2.428890 CTCACCTGGAGCGAAGTCTATT 59.571 50.000 0.00 0.00 36.69 1.73
222 223 2.028130 CTCACCTGGAGCGAAGTCTAT 58.972 52.381 0.00 0.00 36.69 1.98
223 224 1.004394 TCTCACCTGGAGCGAAGTCTA 59.996 52.381 0.00 0.00 43.70 2.59
224 225 0.251386 TCTCACCTGGAGCGAAGTCT 60.251 55.000 0.00 0.00 43.70 3.24
225 226 0.603569 TTCTCACCTGGAGCGAAGTC 59.396 55.000 0.00 0.00 43.70 3.01
226 227 1.066573 CATTCTCACCTGGAGCGAAGT 60.067 52.381 0.00 0.00 43.70 3.01
227 228 1.649664 CATTCTCACCTGGAGCGAAG 58.350 55.000 0.00 0.00 43.70 3.79
228 229 0.250234 CCATTCTCACCTGGAGCGAA 59.750 55.000 0.00 0.00 43.70 4.70
229 230 1.617018 CCCATTCTCACCTGGAGCGA 61.617 60.000 0.00 0.00 43.70 4.93
230 231 1.153289 CCCATTCTCACCTGGAGCG 60.153 63.158 0.00 0.00 43.70 5.03
231 232 0.179936 CTCCCATTCTCACCTGGAGC 59.820 60.000 0.00 0.00 43.70 4.70
232 233 1.761784 CTCTCCCATTCTCACCTGGAG 59.238 57.143 0.00 0.00 45.49 3.86
233 234 1.362584 TCTCTCCCATTCTCACCTGGA 59.637 52.381 0.00 0.00 34.24 3.86
234 235 1.761784 CTCTCTCCCATTCTCACCTGG 59.238 57.143 0.00 0.00 0.00 4.45
240 241 3.575805 AGATGACCTCTCTCCCATTCTC 58.424 50.000 0.00 0.00 0.00 2.87
244 245 3.127791 ACAAGATGACCTCTCTCCCAT 57.872 47.619 0.00 0.00 31.03 4.00
400 645 4.336280 AGCAAAATTCTACTCCCTCAACC 58.664 43.478 0.00 0.00 0.00 3.77
401 646 6.174049 ACTAGCAAAATTCTACTCCCTCAAC 58.826 40.000 0.00 0.00 0.00 3.18
583 2033 3.849953 GTGGTGGATTCGCGCGTC 61.850 66.667 30.98 20.75 0.00 5.19
657 2107 2.016961 CGAATTGGGCAGTCCGATG 58.983 57.895 0.00 0.00 39.58 3.84
763 2218 1.134367 TCGGTCGATACTTGGAGCAAG 59.866 52.381 0.00 0.00 45.85 4.01
800 2255 1.413382 GCAGGATCTCGATTACGCTG 58.587 55.000 0.00 0.00 39.58 5.18
895 2350 6.357367 ACAAGTAAATTATCTTCGGGAGCAT 58.643 36.000 0.00 0.00 0.00 3.79
896 2351 5.741011 ACAAGTAAATTATCTTCGGGAGCA 58.259 37.500 0.00 0.00 0.00 4.26
897 2352 6.487103 CAACAAGTAAATTATCTTCGGGAGC 58.513 40.000 0.00 0.00 0.00 4.70
898 2353 6.093495 TGCAACAAGTAAATTATCTTCGGGAG 59.907 38.462 0.00 0.00 0.00 4.30
899 2354 5.941058 TGCAACAAGTAAATTATCTTCGGGA 59.059 36.000 0.00 0.00 0.00 5.14
902 2357 7.164171 CCGATTGCAACAAGTAAATTATCTTCG 59.836 37.037 0.00 0.78 0.00 3.79
1049 2504 1.067915 GTAATCTGCCTTGGCGCAAAA 60.068 47.619 10.83 1.45 38.56 2.44
1153 2612 1.447838 GTGCCATCCATGTCGACGT 60.448 57.895 11.62 7.97 0.00 4.34
1196 2655 1.741525 GCCAACAAAAGCAGGAGCA 59.258 52.632 0.00 0.00 45.49 4.26
1207 2666 0.602638 ACGATCAGAAGCGCCAACAA 60.603 50.000 2.29 0.00 37.98 2.83
1619 3087 1.758514 GTCTCCATCTCCGGCTCCA 60.759 63.158 0.00 0.00 0.00 3.86
1978 3448 4.065281 CGCCTTCTTCCGTCCCGT 62.065 66.667 0.00 0.00 0.00 5.28
2153 3623 1.154413 CCAACGAGCACGATGTTGC 60.154 57.895 11.40 0.00 41.17 4.17
2259 3729 4.900635 ACGAGACAGAATTTGCACTTTT 57.099 36.364 0.00 0.00 0.00 2.27
2328 3798 2.173382 CTACGTGCACGCAAAGCC 59.827 61.111 37.35 0.00 44.43 4.35
2821 4291 1.893801 CCGTAGAAGAGGGTGTTGAGT 59.106 52.381 0.00 0.00 0.00 3.41
2825 4295 0.115745 TCCCCGTAGAAGAGGGTGTT 59.884 55.000 0.00 0.00 46.17 3.32
2826 4296 0.324460 CTCCCCGTAGAAGAGGGTGT 60.324 60.000 0.00 0.00 46.17 4.16
3050 4520 1.372683 CATCGATTCCGGCCATCCT 59.627 57.895 2.24 0.00 36.24 3.24
3097 4578 9.804758 CAAACATTTGTAAACACCCTACTAAAA 57.195 29.630 0.00 0.00 33.59 1.52
3154 4635 2.290071 ACCAACGTACATTCTTCCCCTG 60.290 50.000 0.00 0.00 0.00 4.45
3169 4650 0.111442 CGTGTTACGCTTCACCAACG 60.111 55.000 0.00 0.00 33.65 4.10
3179 4660 7.008992 AAGATCTAAACAATCTACGTGTTACGC 59.991 37.037 0.00 0.00 37.53 4.42
3207 4688 3.348119 TCATGCGCCCTATTGTTGTTAA 58.652 40.909 4.18 0.00 0.00 2.01
3208 4689 2.992593 TCATGCGCCCTATTGTTGTTA 58.007 42.857 4.18 0.00 0.00 2.41
3216 4697 2.880890 GAGAACAATTCATGCGCCCTAT 59.119 45.455 4.18 0.00 0.00 2.57
3217 4698 2.288666 GAGAACAATTCATGCGCCCTA 58.711 47.619 4.18 0.00 0.00 3.53
3218 4699 1.098050 GAGAACAATTCATGCGCCCT 58.902 50.000 4.18 0.00 0.00 5.19
3386 4989 5.041287 GCTCCAACTTTTATTAAATCCCGC 58.959 41.667 0.00 0.00 0.00 6.13
3405 5009 1.562783 AAGTCTACCTCCACAGCTCC 58.437 55.000 0.00 0.00 0.00 4.70
3522 5132 4.787551 TGTCTTTTGAGGTACCACATGTT 58.212 39.130 15.94 0.00 0.00 2.71
3635 5246 5.822519 TCGCATAGGACATTAAAAGCTTGAT 59.177 36.000 0.00 0.00 0.00 2.57
3648 5259 2.164422 CACTCTCTTGTCGCATAGGACA 59.836 50.000 0.00 0.00 44.74 4.02
3687 5301 6.644347 AGATTGAATCGTTGTCCTACAGAAT 58.356 36.000 0.00 0.00 0.00 2.40
3712 5326 3.700538 ACATTCAGCCATACAACACCAT 58.299 40.909 0.00 0.00 0.00 3.55
3715 5329 3.255642 ACCAACATTCAGCCATACAACAC 59.744 43.478 0.00 0.00 0.00 3.32
3746 5362 4.093408 CACCTAACTTTGGACATGTCATCG 59.907 45.833 26.47 13.74 0.00 3.84
3775 5392 8.851145 ACGTATCTATCTCAACATACACATCTT 58.149 33.333 0.00 0.00 0.00 2.40
3794 5411 3.068307 GTCTCTTGTATGGGCACGTATCT 59.932 47.826 0.00 0.00 0.00 1.98
3799 5416 0.172578 TCGTCTCTTGTATGGGCACG 59.827 55.000 0.00 0.00 0.00 5.34
3803 5420 1.470979 CCCGTTCGTCTCTTGTATGGG 60.471 57.143 0.00 0.00 0.00 4.00
3807 5424 0.518636 CGACCCGTTCGTCTCTTGTA 59.481 55.000 0.00 0.00 43.24 2.41
3819 5436 3.996150 ATCAACGTATATTCGACCCGT 57.004 42.857 8.85 0.00 34.70 5.28
3863 5487 2.076863 CGATGTTGGACAACCTTCTCC 58.923 52.381 12.21 0.00 40.46 3.71
3884 5508 5.624159 TGTATATGCTCAAATCTTCCCAGG 58.376 41.667 0.00 0.00 0.00 4.45
3891 5515 5.561532 GCATGCGTTGTATATGCTCAAATCT 60.562 40.000 0.00 0.00 42.84 2.40
3918 5543 2.125147 GCACCGATACTGCTGGCA 60.125 61.111 0.00 0.00 0.00 4.92
3928 5553 3.281727 AACAGTCCAATATGCACCGAT 57.718 42.857 0.00 0.00 0.00 4.18
3972 5597 6.182627 TGATATCAAATTTGGTCTGCTGACT 58.817 36.000 21.27 0.80 42.54 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.