Multiple sequence alignment - TraesCS3B01G204400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G204400 chr3B 100.000 3425 0 0 1 3425 238500093 238503517 0.000000e+00 6325.0
1 TraesCS3B01G204400 chr3B 96.667 120 4 0 2467 2586 457968681 457968800 2.080000e-47 200.0
2 TraesCS3B01G204400 chr3B 95.968 124 4 1 2467 2590 805003451 805003329 2.080000e-47 200.0
3 TraesCS3B01G204400 chr3B 94.574 129 6 1 2457 2584 545060820 545060692 7.500000e-47 198.0
4 TraesCS3B01G204400 chr3A 93.529 1700 88 12 780 2469 191889334 191891021 0.000000e+00 2510.0
5 TraesCS3B01G204400 chr3A 92.631 977 47 7 1517 2469 191884728 191885703 0.000000e+00 1382.0
6 TraesCS3B01G204400 chr3A 89.431 492 24 6 1031 1518 191883599 191884066 2.280000e-166 595.0
7 TraesCS3B01G204400 chr3A 87.863 379 34 9 419 792 191888637 191889008 5.250000e-118 435.0
8 TraesCS3B01G204400 chr3A 85.533 394 28 10 419 791 191846171 191846556 5.360000e-103 385.0
9 TraesCS3B01G204400 chr3A 88.444 225 10 4 825 1048 191883081 191883290 1.220000e-64 257.0
10 TraesCS3B01G204400 chr3D 92.684 1654 55 17 851 2469 161978158 161979780 0.000000e+00 2324.0
11 TraesCS3B01G204400 chr3D 91.256 1361 64 18 1149 2469 161938006 161939351 0.000000e+00 1803.0
12 TraesCS3B01G204400 chr3D 90.426 376 34 2 1 376 161931531 161931904 8.540000e-136 494.0
13 TraesCS3B01G204400 chr3D 89.182 379 34 7 419 793 161932024 161932399 1.860000e-127 466.0
14 TraesCS3B01G204400 chr3D 88.161 397 32 10 419 809 161977771 161978158 3.110000e-125 459.0
15 TraesCS3B01G204400 chr3D 87.626 396 20 6 771 1153 161932422 161932801 1.890000e-117 433.0
16 TraesCS3B01G204400 chr3D 97.436 39 1 0 374 412 161931926 161931964 2.210000e-07 67.6
17 TraesCS3B01G204400 chr3D 91.489 47 2 2 2671 2716 17340599 17340554 2.850000e-06 63.9
18 TraesCS3B01G204400 chr4D 93.624 643 33 5 2790 3425 468583030 468583671 0.000000e+00 953.0
19 TraesCS3B01G204400 chr4D 93.458 642 35 4 2790 3425 359210823 359211463 0.000000e+00 946.0
20 TraesCS3B01G204400 chr2D 93.624 643 33 4 2790 3425 354854706 354855347 0.000000e+00 953.0
21 TraesCS3B01G204400 chr2D 93.468 643 33 7 2790 3425 192715966 192716606 0.000000e+00 946.0
22 TraesCS3B01G204400 chr2D 96.694 121 4 0 2467 2587 305940256 305940136 5.800000e-48 202.0
23 TraesCS3B01G204400 chr6D 93.740 639 33 4 2793 3425 104708010 104707373 0.000000e+00 952.0
24 TraesCS3B01G204400 chr6D 93.730 638 32 5 2795 3425 304168950 304168314 0.000000e+00 950.0
25 TraesCS3B01G204400 chr6D 93.594 640 33 5 2793 3425 309542090 309541452 0.000000e+00 948.0
26 TraesCS3B01G204400 chr6D 96.694 121 4 0 2467 2587 329858711 329858591 5.800000e-48 202.0
27 TraesCS3B01G204400 chr6D 90.741 54 3 2 2664 2716 54751359 54751307 1.710000e-08 71.3
28 TraesCS3B01G204400 chr5D 93.427 639 36 3 2793 3425 239185974 239185336 0.000000e+00 942.0
29 TraesCS3B01G204400 chr1D 93.438 640 35 4 2793 3425 303018515 303017876 0.000000e+00 942.0
30 TraesCS3B01G204400 chr1D 95.238 42 2 0 2658 2699 18808467 18808426 2.210000e-07 67.6
31 TraesCS3B01G204400 chr4B 96.721 122 4 0 2463 2584 143309960 143310081 1.610000e-48 204.0
32 TraesCS3B01G204400 chr4B 95.000 40 1 1 2665 2703 600518208 600518247 1.030000e-05 62.1
33 TraesCS3B01G204400 chr7B 96.694 121 4 0 2464 2584 594954142 594954262 5.800000e-48 202.0
34 TraesCS3B01G204400 chr1B 97.458 118 3 0 2467 2584 156585599 156585482 5.800000e-48 202.0
35 TraesCS3B01G204400 chr1B 92.593 135 8 2 2468 2601 583149522 583149655 3.490000e-45 193.0
36 TraesCS3B01G204400 chr5A 82.447 188 29 4 1 186 676773614 676773429 9.840000e-36 161.0
37 TraesCS3B01G204400 chr5A 87.179 78 10 0 2713 2790 440260960 440260883 4.710000e-14 89.8
38 TraesCS3B01G204400 chr5B 81.053 95 12 6 2658 2748 590549245 590549153 1.710000e-08 71.3
39 TraesCS3B01G204400 chr2B 79.279 111 13 10 2658 2763 541908588 541908693 6.130000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G204400 chr3B 238500093 238503517 3424 False 6325.00 6325 100.0000 1 3425 1 chr3B.!!$F1 3424
1 TraesCS3B01G204400 chr3A 191883081 191891021 7940 False 1035.80 2510 90.3796 419 2469 5 chr3A.!!$F2 2050
2 TraesCS3B01G204400 chr3D 161938006 161939351 1345 False 1803.00 1803 91.2560 1149 2469 1 chr3D.!!$F1 1320
3 TraesCS3B01G204400 chr3D 161977771 161979780 2009 False 1391.50 2324 90.4225 419 2469 2 chr3D.!!$F3 2050
4 TraesCS3B01G204400 chr3D 161931531 161932801 1270 False 365.15 494 91.1675 1 1153 4 chr3D.!!$F2 1152
5 TraesCS3B01G204400 chr4D 468583030 468583671 641 False 953.00 953 93.6240 2790 3425 1 chr4D.!!$F2 635
6 TraesCS3B01G204400 chr4D 359210823 359211463 640 False 946.00 946 93.4580 2790 3425 1 chr4D.!!$F1 635
7 TraesCS3B01G204400 chr2D 354854706 354855347 641 False 953.00 953 93.6240 2790 3425 1 chr2D.!!$F2 635
8 TraesCS3B01G204400 chr2D 192715966 192716606 640 False 946.00 946 93.4680 2790 3425 1 chr2D.!!$F1 635
9 TraesCS3B01G204400 chr6D 104707373 104708010 637 True 952.00 952 93.7400 2793 3425 1 chr6D.!!$R2 632
10 TraesCS3B01G204400 chr6D 304168314 304168950 636 True 950.00 950 93.7300 2795 3425 1 chr6D.!!$R3 630
11 TraesCS3B01G204400 chr6D 309541452 309542090 638 True 948.00 948 93.5940 2793 3425 1 chr6D.!!$R4 632
12 TraesCS3B01G204400 chr5D 239185336 239185974 638 True 942.00 942 93.4270 2793 3425 1 chr5D.!!$R1 632
13 TraesCS3B01G204400 chr1D 303017876 303018515 639 True 942.00 942 93.4380 2793 3425 1 chr1D.!!$R2 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
767 5910 0.03213 TCAGTCAGTCCTTGTCGTGC 59.968 55.0 0.0 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2743 8290 0.099082 GAAGGAGCACGTACGAGAGG 59.901 60.0 24.41 9.3 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.826893 AAATGTTCGGACTTTCAAACATTG 57.173 33.333 11.70 0.00 46.26 2.82
27 28 3.049912 GTTCGGACTTTCAAACATTGCC 58.950 45.455 0.00 0.00 0.00 4.52
33 34 5.507315 CGGACTTTCAAACATTGCCTACTTT 60.507 40.000 0.00 0.00 0.00 2.66
95 96 7.775397 AAAATCAAAATGTGTTGAGTTCTGG 57.225 32.000 0.00 0.00 43.03 3.86
98 99 4.341806 TCAAAATGTGTTGAGTTCTGGCAT 59.658 37.500 0.00 0.00 32.56 4.40
132 133 9.449719 AGTTCTTAGAAATTATCACCACGAATT 57.550 29.630 0.00 0.00 0.00 2.17
168 169 0.037512 CAGCTCCCATGGCTATCGAG 60.038 60.000 6.09 8.43 38.03 4.04
182 183 4.745620 GGCTATCGAGAACACTTCATTACC 59.254 45.833 0.00 0.00 0.00 2.85
201 202 1.380112 GAGGGGTCCTCTACAGCGT 60.380 63.158 6.70 0.00 46.41 5.07
202 203 1.668101 GAGGGGTCCTCTACAGCGTG 61.668 65.000 6.70 0.00 46.41 5.34
216 217 3.773117 GCGTGCTGCTATTTTGTGT 57.227 47.368 0.00 0.00 41.73 3.72
244 245 4.568072 TCCTGTTGTGCTACAATACCAT 57.432 40.909 5.26 0.00 40.59 3.55
310 311 4.506255 GCAATGGGCCGGCCTAGT 62.506 66.667 42.70 35.61 36.11 2.57
347 348 2.735762 GCGAAGGAGCGTCTATTTGTCT 60.736 50.000 0.00 0.00 0.00 3.41
359 360 1.317613 ATTTGTCTCAAAGTGCGGCA 58.682 45.000 0.00 0.00 0.00 5.69
368 369 1.532868 CAAAGTGCGGCATATAGGAGC 59.467 52.381 5.72 0.00 0.00 4.70
495 5638 5.851177 CGAACAACTATTGGTTCATGAACAC 59.149 40.000 33.42 24.14 42.67 3.32
513 5656 2.422127 ACACAACTGACTTCCGGTTTTG 59.578 45.455 0.00 0.00 43.80 2.44
516 5659 3.315191 ACAACTGACTTCCGGTTTTGATG 59.685 43.478 0.00 0.00 42.23 3.07
548 5691 7.513371 AATGTTCGTGGATTTAAACCAGTTA 57.487 32.000 9.04 0.00 38.14 2.24
767 5910 0.032130 TCAGTCAGTCCTTGTCGTGC 59.968 55.000 0.00 0.00 0.00 5.34
777 5920 1.270625 CCTTGTCGTGCAAAGGTAGGA 60.271 52.381 6.72 0.00 36.53 2.94
786 5929 4.079253 GTGCAAAGGTAGGATTTTCCTCA 58.921 43.478 0.00 0.00 45.66 3.86
812 6293 4.536765 TCCAGCCAAAAGAAAAAGAGTCT 58.463 39.130 0.00 0.00 0.00 3.24
816 6297 6.039829 CCAGCCAAAAGAAAAAGAGTCTAACT 59.960 38.462 0.00 0.00 0.00 2.24
898 6379 4.288531 GAGTTCGATCGTAATTCATCCGT 58.711 43.478 15.94 0.00 0.00 4.69
901 6382 4.499037 TCGATCGTAATTCATCCGTCAT 57.501 40.909 15.94 0.00 0.00 3.06
985 6466 2.677573 TACGCATCGGGCTGATCGTG 62.678 60.000 28.20 21.54 39.48 4.35
986 6467 2.969238 GCATCGGGCTGATCGTGG 60.969 66.667 5.67 0.00 40.25 4.94
1228 6723 3.647649 CTCGCGATGCACCTCCACA 62.648 63.158 10.36 0.00 0.00 4.17
1230 6725 2.870372 GCGATGCACCTCCACAAC 59.130 61.111 0.00 0.00 0.00 3.32
1292 6787 6.183360 CGTAAGTGTCGAGCCAGAAATTAATT 60.183 38.462 0.00 0.00 0.00 1.40
1296 6791 7.697691 AGTGTCGAGCCAGAAATTAATTATTG 58.302 34.615 0.01 3.33 0.00 1.90
1352 6853 9.371136 ACTGTATATCCGAATTATTGCATAGTG 57.629 33.333 0.00 0.00 0.00 2.74
1450 6954 0.887933 AATTTGCGATCGGTTGCCTT 59.112 45.000 18.30 0.00 33.52 4.35
1522 7026 7.701539 AGCAAGTATGTTGTCCAATAATTCA 57.298 32.000 0.00 0.00 0.00 2.57
1553 7057 2.755650 AGTTGCTGACCTACAAACTCG 58.244 47.619 0.00 0.00 27.30 4.18
1731 7258 3.002656 GCACGCATACTACTTCTACCGTA 59.997 47.826 0.00 0.00 0.00 4.02
1748 7277 5.535753 ACCGTAACTTGGTTGTACTTACT 57.464 39.130 0.00 0.00 35.82 2.24
1754 7283 8.060090 CGTAACTTGGTTGTACTTACTTTTGAG 58.940 37.037 0.00 0.00 0.00 3.02
1784 7313 2.881074 CTCGTGAATCGTGATCACCTT 58.119 47.619 20.03 13.40 43.34 3.50
1813 7342 3.117888 GGATCAGGAGTTTCCCAGCATTA 60.118 47.826 0.00 0.00 37.19 1.90
2023 7561 1.303643 CAACAGCTCCCCTTCACCC 60.304 63.158 0.00 0.00 0.00 4.61
2321 7859 3.129813 ACGAATGTGATGATTGCTGCAAT 59.870 39.130 26.54 26.54 36.72 3.56
2406 7944 1.482593 CCGCACTCTATTCTTCCCACT 59.517 52.381 0.00 0.00 0.00 4.00
2441 7986 4.968719 TCCCTAGGAGATGCATCTTTTGTA 59.031 41.667 29.26 16.51 37.25 2.41
2469 8016 6.534634 ACCATTTATGACCAATAGGAGCTAC 58.465 40.000 0.00 0.00 38.69 3.58
2470 8017 6.330250 ACCATTTATGACCAATAGGAGCTACT 59.670 38.462 2.64 2.64 38.69 2.57
2471 8018 6.876257 CCATTTATGACCAATAGGAGCTACTC 59.124 42.308 0.00 0.00 38.69 2.59
2479 8026 4.358810 GGAGCTACTCCCTCCGTT 57.641 61.111 1.98 0.00 44.36 4.44
2480 8027 2.117257 GGAGCTACTCCCTCCGTTC 58.883 63.158 1.98 0.00 44.36 3.95
2481 8028 1.726533 GGAGCTACTCCCTCCGTTCG 61.727 65.000 1.98 0.00 44.36 3.95
2482 8029 1.726533 GAGCTACTCCCTCCGTTCGG 61.727 65.000 4.74 4.74 0.00 4.30
2483 8030 1.751927 GCTACTCCCTCCGTTCGGA 60.752 63.158 13.34 13.34 0.00 4.55
2484 8031 1.318158 GCTACTCCCTCCGTTCGGAA 61.318 60.000 14.79 0.04 33.41 4.30
2485 8032 1.400737 CTACTCCCTCCGTTCGGAAT 58.599 55.000 14.79 2.09 33.41 3.01
2486 8033 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
2487 8034 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2488 8035 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2489 8036 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2490 8037 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2491 8038 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2492 8039 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2493 8040 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2494 8041 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
2495 8042 4.181578 CTCCGTTCGGAATTACTTGTCAT 58.818 43.478 14.79 0.00 33.41 3.06
2496 8043 5.327616 TCCGTTCGGAATTACTTGTCATA 57.672 39.130 11.66 0.00 0.00 2.15
2497 8044 5.722263 TCCGTTCGGAATTACTTGTCATAA 58.278 37.500 11.66 0.00 0.00 1.90
2498 8045 6.164876 TCCGTTCGGAATTACTTGTCATAAA 58.835 36.000 11.66 0.00 0.00 1.40
2499 8046 6.649973 TCCGTTCGGAATTACTTGTCATAAAA 59.350 34.615 11.66 0.00 0.00 1.52
2500 8047 7.172875 TCCGTTCGGAATTACTTGTCATAAAAA 59.827 33.333 11.66 0.00 0.00 1.94
2501 8048 7.966204 CCGTTCGGAATTACTTGTCATAAAAAT 59.034 33.333 5.19 0.00 0.00 1.82
2502 8049 8.785101 CGTTCGGAATTACTTGTCATAAAAATG 58.215 33.333 0.00 0.00 0.00 2.32
2503 8050 9.072294 GTTCGGAATTACTTGTCATAAAAATGG 57.928 33.333 0.00 0.00 0.00 3.16
2504 8051 8.568676 TCGGAATTACTTGTCATAAAAATGGA 57.431 30.769 0.00 0.00 0.00 3.41
2505 8052 9.184523 TCGGAATTACTTGTCATAAAAATGGAT 57.815 29.630 0.00 0.00 0.00 3.41
2559 8106 9.770097 TCATCTAGATACATTCATTTCTTGGAC 57.230 33.333 4.54 0.00 0.00 4.02
2560 8107 8.706936 CATCTAGATACATTCATTTCTTGGACG 58.293 37.037 4.54 0.00 0.00 4.79
2561 8108 8.007405 TCTAGATACATTCATTTCTTGGACGA 57.993 34.615 0.00 0.00 0.00 4.20
2562 8109 8.138074 TCTAGATACATTCATTTCTTGGACGAG 58.862 37.037 0.00 0.00 0.00 4.18
2563 8110 6.644347 AGATACATTCATTTCTTGGACGAGT 58.356 36.000 0.00 0.00 0.00 4.18
2564 8111 7.782049 AGATACATTCATTTCTTGGACGAGTA 58.218 34.615 0.00 0.00 0.00 2.59
2565 8112 8.258007 AGATACATTCATTTCTTGGACGAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
2566 8113 8.964476 ATACATTCATTTCTTGGACGAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
2567 8114 7.687941 ACATTCATTTCTTGGACGAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
2568 8115 7.752695 ACATTCATTTCTTGGACGAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
2569 8116 6.737254 TTCATTTCTTGGACGAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
2570 8117 4.868171 TCATTTCTTGGACGAGTAATTCCG 59.132 41.667 0.00 0.00 0.00 4.30
2571 8118 4.524316 TTTCTTGGACGAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
2572 8119 4.524316 TTCTTGGACGAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
2573 8120 3.841643 TCTTGGACGAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
2574 8121 2.267188 TGGACGAGTAATTCCGAACG 57.733 50.000 0.00 0.00 0.00 3.95
2575 8122 1.135315 TGGACGAGTAATTCCGAACGG 60.135 52.381 6.94 6.94 0.00 4.44
2576 8123 1.133025 GGACGAGTAATTCCGAACGGA 59.867 52.381 12.04 12.04 43.52 4.69
2577 8124 2.448219 GACGAGTAATTCCGAACGGAG 58.552 52.381 15.34 5.60 46.06 4.63
2578 8125 1.133790 ACGAGTAATTCCGAACGGAGG 59.866 52.381 15.34 4.28 46.06 4.30
2579 8126 1.535437 CGAGTAATTCCGAACGGAGGG 60.535 57.143 15.34 0.00 46.06 4.30
2580 8127 1.753073 GAGTAATTCCGAACGGAGGGA 59.247 52.381 15.34 2.49 46.06 4.20
2581 8128 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2582 8129 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
2583 8130 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
2584 8131 2.083628 ATTCCGAACGGAGGGAGTAT 57.916 50.000 15.34 3.38 46.06 2.12
2585 8132 2.734755 TTCCGAACGGAGGGAGTATA 57.265 50.000 15.34 0.00 46.06 1.47
2586 8133 2.965671 TCCGAACGGAGGGAGTATAT 57.034 50.000 12.04 0.00 39.76 0.86
2587 8134 4.371624 TTCCGAACGGAGGGAGTATATA 57.628 45.455 15.34 0.00 46.06 0.86
2588 8135 3.679389 TCCGAACGGAGGGAGTATATAC 58.321 50.000 12.04 4.60 39.76 1.47
2589 8136 3.328931 TCCGAACGGAGGGAGTATATACT 59.671 47.826 15.37 15.37 39.76 2.12
2590 8137 4.077822 CCGAACGGAGGGAGTATATACTT 58.922 47.826 16.46 1.01 35.25 2.24
2591 8138 4.082895 CCGAACGGAGGGAGTATATACTTG 60.083 50.000 16.46 5.93 35.25 3.16
2592 8139 4.082895 CGAACGGAGGGAGTATATACTTGG 60.083 50.000 16.46 5.76 36.50 3.61
2593 8140 4.466255 ACGGAGGGAGTATATACTTGGT 57.534 45.455 16.46 4.44 36.50 3.67
2594 8141 4.150359 ACGGAGGGAGTATATACTTGGTG 58.850 47.826 16.46 7.75 36.50 4.17
2595 8142 3.056749 CGGAGGGAGTATATACTTGGTGC 60.057 52.174 16.46 8.37 36.50 5.01
2596 8143 3.261137 GGAGGGAGTATATACTTGGTGCC 59.739 52.174 16.46 11.97 36.50 5.01
2597 8144 2.897969 AGGGAGTATATACTTGGTGCCG 59.102 50.000 16.46 0.00 36.50 5.69
2598 8145 2.631545 GGGAGTATATACTTGGTGCCGT 59.368 50.000 16.46 0.00 36.50 5.68
2599 8146 3.070590 GGGAGTATATACTTGGTGCCGTT 59.929 47.826 16.46 0.00 36.50 4.44
2600 8147 4.443881 GGGAGTATATACTTGGTGCCGTTT 60.444 45.833 16.46 0.00 36.50 3.60
2601 8148 5.221501 GGGAGTATATACTTGGTGCCGTTTA 60.222 44.000 16.46 0.00 36.50 2.01
2602 8149 5.924825 GGAGTATATACTTGGTGCCGTTTAG 59.075 44.000 16.46 0.00 36.50 1.85
2603 8150 6.239120 GGAGTATATACTTGGTGCCGTTTAGA 60.239 42.308 16.46 0.00 36.50 2.10
2604 8151 7.299246 AGTATATACTTGGTGCCGTTTAGAT 57.701 36.000 9.71 0.00 31.13 1.98
2605 8152 7.152645 AGTATATACTTGGTGCCGTTTAGATG 58.847 38.462 9.71 0.00 31.13 2.90
2606 8153 1.821216 ACTTGGTGCCGTTTAGATGG 58.179 50.000 0.00 0.00 34.87 3.51
2607 8154 1.073284 ACTTGGTGCCGTTTAGATGGT 59.927 47.619 0.00 0.00 34.20 3.55
2608 8155 2.159382 CTTGGTGCCGTTTAGATGGTT 58.841 47.619 0.00 0.00 34.20 3.67
2609 8156 2.279935 TGGTGCCGTTTAGATGGTTT 57.720 45.000 0.00 0.00 34.20 3.27
2610 8157 2.588620 TGGTGCCGTTTAGATGGTTTT 58.411 42.857 0.00 0.00 34.20 2.43
2611 8158 2.959707 TGGTGCCGTTTAGATGGTTTTT 59.040 40.909 0.00 0.00 34.20 1.94
2636 8183 8.818141 TTTAGAACAAAGATGATATAGAGGCG 57.182 34.615 0.00 0.00 0.00 5.52
2637 8184 6.412362 AGAACAAAGATGATATAGAGGCGT 57.588 37.500 0.00 0.00 0.00 5.68
2638 8185 6.451393 AGAACAAAGATGATATAGAGGCGTC 58.549 40.000 0.00 0.00 0.00 5.19
2639 8186 5.140747 ACAAAGATGATATAGAGGCGTCC 57.859 43.478 2.06 0.00 0.00 4.79
2640 8187 4.169508 CAAAGATGATATAGAGGCGTCCG 58.830 47.826 2.06 0.00 0.00 4.79
2641 8188 2.370349 AGATGATATAGAGGCGTCCGG 58.630 52.381 2.06 0.00 0.00 5.14
2642 8189 0.818296 ATGATATAGAGGCGTCCGGC 59.182 55.000 4.96 4.96 42.51 6.13
2652 8199 2.750301 GGCGTCCGGCTTTAAATTAG 57.250 50.000 5.95 0.00 42.94 1.73
2653 8200 2.282407 GGCGTCCGGCTTTAAATTAGA 58.718 47.619 5.95 0.00 42.94 2.10
2654 8201 2.876550 GGCGTCCGGCTTTAAATTAGAT 59.123 45.455 5.95 0.00 42.94 1.98
2655 8202 3.059120 GGCGTCCGGCTTTAAATTAGATC 60.059 47.826 5.95 0.00 42.94 2.75
2656 8203 3.558418 GCGTCCGGCTTTAAATTAGATCA 59.442 43.478 0.00 0.00 39.11 2.92
2657 8204 4.318831 GCGTCCGGCTTTAAATTAGATCAG 60.319 45.833 0.00 0.00 39.11 2.90
2658 8205 4.809426 CGTCCGGCTTTAAATTAGATCAGT 59.191 41.667 0.00 0.00 0.00 3.41
2659 8206 5.981315 CGTCCGGCTTTAAATTAGATCAGTA 59.019 40.000 0.00 0.00 0.00 2.74
2660 8207 6.074463 CGTCCGGCTTTAAATTAGATCAGTAC 60.074 42.308 0.00 0.00 0.00 2.73
2661 8208 6.985059 GTCCGGCTTTAAATTAGATCAGTACT 59.015 38.462 0.00 0.00 0.00 2.73
2662 8209 7.169476 GTCCGGCTTTAAATTAGATCAGTACTC 59.831 40.741 0.00 0.00 0.00 2.59
2663 8210 6.144080 CCGGCTTTAAATTAGATCAGTACTCG 59.856 42.308 0.00 0.00 0.00 4.18
2664 8211 6.144080 CGGCTTTAAATTAGATCAGTACTCGG 59.856 42.308 0.00 0.00 0.00 4.63
2665 8212 6.073711 GGCTTTAAATTAGATCAGTACTCGGC 60.074 42.308 0.00 0.00 0.00 5.54
2666 8213 6.345882 GCTTTAAATTAGATCAGTACTCGGCG 60.346 42.308 0.00 0.00 0.00 6.46
2667 8214 2.708386 ATTAGATCAGTACTCGGCGC 57.292 50.000 0.00 0.00 0.00 6.53
2668 8215 0.666913 TTAGATCAGTACTCGGCGCC 59.333 55.000 19.07 19.07 0.00 6.53
2669 8216 0.464916 TAGATCAGTACTCGGCGCCA 60.465 55.000 28.98 12.94 0.00 5.69
2670 8217 1.299468 GATCAGTACTCGGCGCCAG 60.299 63.158 28.98 23.74 0.00 4.85
2671 8218 3.432051 ATCAGTACTCGGCGCCAGC 62.432 63.158 28.98 10.85 44.18 4.85
2698 8245 2.642700 CAAAGTTTGGGCCGGTCG 59.357 61.111 7.78 0.00 0.00 4.79
2699 8246 2.596338 AAAGTTTGGGCCGGTCGG 60.596 61.111 1.90 4.85 38.57 4.79
2717 8264 4.547367 CCCCACGCCTTCCGATCC 62.547 72.222 0.00 0.00 41.02 3.36
2718 8265 3.470888 CCCACGCCTTCCGATCCT 61.471 66.667 0.00 0.00 41.02 3.24
2719 8266 2.584608 CCACGCCTTCCGATCCTT 59.415 61.111 0.00 0.00 41.02 3.36
2720 8267 1.521681 CCACGCCTTCCGATCCTTC 60.522 63.158 0.00 0.00 41.02 3.46
2721 8268 1.521681 CACGCCTTCCGATCCTTCC 60.522 63.158 0.00 0.00 41.02 3.46
2722 8269 1.686110 ACGCCTTCCGATCCTTCCT 60.686 57.895 0.00 0.00 41.02 3.36
2723 8270 1.227380 CGCCTTCCGATCCTTCCTG 60.227 63.158 0.00 0.00 40.02 3.86
2724 8271 1.908483 GCCTTCCGATCCTTCCTGT 59.092 57.895 0.00 0.00 0.00 4.00
2725 8272 0.253327 GCCTTCCGATCCTTCCTGTT 59.747 55.000 0.00 0.00 0.00 3.16
2726 8273 2.014068 GCCTTCCGATCCTTCCTGTTG 61.014 57.143 0.00 0.00 0.00 3.33
2727 8274 1.279271 CCTTCCGATCCTTCCTGTTGT 59.721 52.381 0.00 0.00 0.00 3.32
2728 8275 2.500098 CCTTCCGATCCTTCCTGTTGTA 59.500 50.000 0.00 0.00 0.00 2.41
2729 8276 3.430929 CCTTCCGATCCTTCCTGTTGTAG 60.431 52.174 0.00 0.00 0.00 2.74
2730 8277 1.480954 TCCGATCCTTCCTGTTGTAGC 59.519 52.381 0.00 0.00 0.00 3.58
2731 8278 1.473434 CCGATCCTTCCTGTTGTAGCC 60.473 57.143 0.00 0.00 0.00 3.93
2732 8279 1.802880 CGATCCTTCCTGTTGTAGCCG 60.803 57.143 0.00 0.00 0.00 5.52
2733 8280 1.207329 GATCCTTCCTGTTGTAGCCGT 59.793 52.381 0.00 0.00 0.00 5.68
2734 8281 0.606604 TCCTTCCTGTTGTAGCCGTC 59.393 55.000 0.00 0.00 0.00 4.79
2735 8282 0.391263 CCTTCCTGTTGTAGCCGTCC 60.391 60.000 0.00 0.00 0.00 4.79
2736 8283 0.736325 CTTCCTGTTGTAGCCGTCCG 60.736 60.000 0.00 0.00 0.00 4.79
2737 8284 1.180456 TTCCTGTTGTAGCCGTCCGA 61.180 55.000 0.00 0.00 0.00 4.55
2738 8285 0.968901 TCCTGTTGTAGCCGTCCGAT 60.969 55.000 0.00 0.00 0.00 4.18
2739 8286 0.527817 CCTGTTGTAGCCGTCCGATC 60.528 60.000 0.00 0.00 0.00 3.69
2740 8287 0.866061 CTGTTGTAGCCGTCCGATCG 60.866 60.000 8.51 8.51 0.00 3.69
2741 8288 1.307355 TGTTGTAGCCGTCCGATCGA 61.307 55.000 18.66 0.00 0.00 3.59
2742 8289 0.591741 GTTGTAGCCGTCCGATCGAG 60.592 60.000 18.66 6.99 0.00 4.04
2743 8290 2.051166 GTAGCCGTCCGATCGAGC 60.051 66.667 18.66 13.51 0.00 5.03
2744 8291 3.285215 TAGCCGTCCGATCGAGCC 61.285 66.667 18.66 2.50 0.00 4.70
2745 8292 3.769369 TAGCCGTCCGATCGAGCCT 62.769 63.158 18.66 5.34 0.00 4.58
2746 8293 4.632458 GCCGTCCGATCGAGCCTC 62.632 72.222 18.66 0.00 0.00 4.70
2747 8294 2.902846 CCGTCCGATCGAGCCTCT 60.903 66.667 18.66 0.00 0.00 3.69
2748 8295 2.634777 CGTCCGATCGAGCCTCTC 59.365 66.667 18.66 0.00 0.00 3.20
2757 8304 3.188965 GAGCCTCTCGTACGTGCT 58.811 61.111 16.05 17.70 34.40 4.40
2758 8305 1.062845 GAGCCTCTCGTACGTGCTC 59.937 63.158 24.18 24.18 41.31 4.26
2759 8306 2.102553 GCCTCTCGTACGTGCTCC 59.897 66.667 16.05 0.62 0.00 4.70
2760 8307 2.408241 GCCTCTCGTACGTGCTCCT 61.408 63.158 16.05 0.00 0.00 3.69
2761 8308 1.935327 GCCTCTCGTACGTGCTCCTT 61.935 60.000 16.05 0.00 0.00 3.36
2762 8309 0.099082 CCTCTCGTACGTGCTCCTTC 59.901 60.000 16.05 0.00 0.00 3.46
2763 8310 1.088306 CTCTCGTACGTGCTCCTTCT 58.912 55.000 16.05 0.00 0.00 2.85
2764 8311 1.469308 CTCTCGTACGTGCTCCTTCTT 59.531 52.381 16.05 0.00 0.00 2.52
2765 8312 1.467734 TCTCGTACGTGCTCCTTCTTC 59.532 52.381 16.05 0.00 0.00 2.87
2766 8313 1.469308 CTCGTACGTGCTCCTTCTTCT 59.531 52.381 16.05 0.00 0.00 2.85
2767 8314 1.467734 TCGTACGTGCTCCTTCTTCTC 59.532 52.381 16.05 0.00 0.00 2.87
2768 8315 1.467713 CGTACGTGCTCCTTCTTCTCC 60.468 57.143 7.22 0.00 0.00 3.71
2769 8316 1.135053 GTACGTGCTCCTTCTTCTCCC 60.135 57.143 0.00 0.00 0.00 4.30
2770 8317 1.219393 CGTGCTCCTTCTTCTCCCC 59.781 63.158 0.00 0.00 0.00 4.81
2771 8318 1.219393 GTGCTCCTTCTTCTCCCCG 59.781 63.158 0.00 0.00 0.00 5.73
2772 8319 1.078528 TGCTCCTTCTTCTCCCCGA 59.921 57.895 0.00 0.00 0.00 5.14
2773 8320 0.325671 TGCTCCTTCTTCTCCCCGAT 60.326 55.000 0.00 0.00 0.00 4.18
2774 8321 0.105778 GCTCCTTCTTCTCCCCGATG 59.894 60.000 0.00 0.00 0.00 3.84
2775 8322 0.105778 CTCCTTCTTCTCCCCGATGC 59.894 60.000 0.00 0.00 0.00 3.91
2776 8323 0.617535 TCCTTCTTCTCCCCGATGCA 60.618 55.000 0.00 0.00 0.00 3.96
2777 8324 0.253044 CCTTCTTCTCCCCGATGCAA 59.747 55.000 0.00 0.00 0.00 4.08
2778 8325 1.340017 CCTTCTTCTCCCCGATGCAAA 60.340 52.381 0.00 0.00 0.00 3.68
2779 8326 2.436417 CTTCTTCTCCCCGATGCAAAA 58.564 47.619 0.00 0.00 0.00 2.44
2780 8327 2.806945 TCTTCTCCCCGATGCAAAAT 57.193 45.000 0.00 0.00 0.00 1.82
2781 8328 3.924114 TCTTCTCCCCGATGCAAAATA 57.076 42.857 0.00 0.00 0.00 1.40
2782 8329 4.437682 TCTTCTCCCCGATGCAAAATAT 57.562 40.909 0.00 0.00 0.00 1.28
2783 8330 4.389374 TCTTCTCCCCGATGCAAAATATC 58.611 43.478 0.00 0.00 0.00 1.63
2784 8331 3.140325 TCTCCCCGATGCAAAATATCC 57.860 47.619 0.00 0.00 0.00 2.59
2785 8332 2.711009 TCTCCCCGATGCAAAATATCCT 59.289 45.455 0.00 0.00 0.00 3.24
2786 8333 3.907474 TCTCCCCGATGCAAAATATCCTA 59.093 43.478 0.00 0.00 0.00 2.94
2787 8334 4.020218 TCTCCCCGATGCAAAATATCCTAG 60.020 45.833 0.00 0.00 0.00 3.02
2788 8335 2.749621 CCCCGATGCAAAATATCCTAGC 59.250 50.000 0.00 0.00 0.00 3.42
2791 8338 2.159653 CGATGCAAAATATCCTAGCGCC 60.160 50.000 2.29 0.00 0.00 6.53
2823 8370 4.984205 GGAACGAGAAGAAGTTCGACTAT 58.016 43.478 0.51 0.00 45.45 2.12
2838 8385 2.215587 CGACTATATCAACCGCGTTGTG 59.784 50.000 16.97 7.70 43.23 3.33
2887 8434 3.563512 GTGGACACACACTCCCCT 58.436 61.111 0.00 0.00 46.90 4.79
2896 8443 0.393077 CACACTCCCCTTCTCGTTGT 59.607 55.000 0.00 0.00 0.00 3.32
3075 8624 7.537596 ACCACCAATGTCTTATTTTGATTCA 57.462 32.000 0.00 0.00 0.00 2.57
3180 8729 2.008242 TTTGCATAAAGGTGGCTGGT 57.992 45.000 0.00 0.00 0.00 4.00
3259 8809 8.300495 TGTTGAAGGTTAAAACAACAAACTTC 57.700 30.769 0.00 5.39 45.71 3.01
3275 8825 7.499321 ACAAACTTCATAAATCACCGTTGTA 57.501 32.000 0.00 0.00 0.00 2.41
3352 8902 7.271653 CGTAAAACTTGCAACAACAAAGTAGAA 59.728 33.333 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 2.358582 CACAATGCCAGAACTCAACACA 59.641 45.455 0.00 0.00 0.00 3.72
123 124 6.460781 TGATTGTAAGTGACTAATTCGTGGT 58.539 36.000 0.00 0.00 0.00 4.16
132 133 5.163405 GGGAGCTGATGATTGTAAGTGACTA 60.163 44.000 0.00 0.00 0.00 2.59
168 169 2.027469 ACCCCTCGGTAATGAAGTGTTC 60.027 50.000 0.00 0.00 42.18 3.18
223 224 4.513442 GATGGTATTGTAGCACAACAGGA 58.487 43.478 4.23 0.00 41.40 3.86
231 232 1.070134 GCTCCCGATGGTATTGTAGCA 59.930 52.381 0.00 0.00 40.84 3.49
283 284 3.055719 CCCATTGCGAACGCCTGT 61.056 61.111 16.27 0.00 41.09 4.00
303 304 0.388294 GGATACACACCGACTAGGCC 59.612 60.000 0.00 0.00 46.52 5.19
310 311 1.214325 CGCACAGGATACACACCGA 59.786 57.895 0.00 0.00 41.41 4.69
316 317 0.175760 GCTCCTTCGCACAGGATACA 59.824 55.000 1.30 0.00 42.42 2.29
347 348 2.806745 GCTCCTATATGCCGCACTTTGA 60.807 50.000 0.00 0.00 0.00 2.69
359 360 4.027437 GGAATCTTCGGGAGCTCCTATAT 58.973 47.826 31.36 15.16 35.95 0.86
368 369 1.432270 GCGCAAGGAATCTTCGGGAG 61.432 60.000 0.30 0.00 38.28 4.30
407 432 1.218316 GACTGAGCTAACCACGGGG 59.782 63.158 0.00 0.00 41.29 5.73
412 437 1.605058 GAGGGCGACTGAGCTAACCA 61.605 60.000 0.00 0.00 37.29 3.67
415 440 1.654954 GACGAGGGCGACTGAGCTAA 61.655 60.000 0.00 0.00 41.64 3.09
417 442 3.444805 GACGAGGGCGACTGAGCT 61.445 66.667 0.00 0.00 41.64 4.09
495 5638 3.304659 CCATCAAAACCGGAAGTCAGTTG 60.305 47.826 9.46 1.32 0.00 3.16
513 5656 8.702163 AAATCCACGAACATTTTTAATCCATC 57.298 30.769 0.00 0.00 0.00 3.51
604 5747 7.647907 ATCATGAACTTCTTCAAATTTGTGC 57.352 32.000 17.47 0.00 39.90 4.57
751 5894 1.261619 CTTTGCACGACAAGGACTGAC 59.738 52.381 0.00 0.00 40.06 3.51
777 5920 3.744940 TGGCTGGAGATTGAGGAAAAT 57.255 42.857 0.00 0.00 0.00 1.82
786 5929 5.600069 ACTCTTTTTCTTTTGGCTGGAGATT 59.400 36.000 0.00 0.00 0.00 2.40
812 6293 7.220108 CGACAACGACTCATTGATGATAAGTTA 59.780 37.037 0.00 0.00 42.66 2.24
816 6297 5.288472 CACGACAACGACTCATTGATGATAA 59.712 40.000 0.00 0.00 42.66 1.75
827 6308 0.388649 ATCTGCCACGACAACGACTC 60.389 55.000 0.00 0.00 42.66 3.36
898 6379 2.985896 CCGGCTGGTTTCTTTAGATGA 58.014 47.619 2.29 0.00 0.00 2.92
1106 6601 1.017387 GCCAATGGGAACGATGAGAC 58.983 55.000 0.00 0.00 35.59 3.36
1107 6602 0.107214 GGCCAATGGGAACGATGAGA 60.107 55.000 0.00 0.00 35.59 3.27
1108 6603 1.439353 CGGCCAATGGGAACGATGAG 61.439 60.000 2.24 0.00 38.03 2.90
1228 6723 0.669625 GTTAGCTTCGCCTCCGTGTT 60.670 55.000 0.00 0.00 35.54 3.32
1230 6725 2.158959 CGTTAGCTTCGCCTCCGTG 61.159 63.158 0.00 0.00 35.54 4.94
1296 6791 9.316730 TGGATTTAACGTGGTATATACAAGAAC 57.683 33.333 14.70 6.27 0.00 3.01
1307 6802 5.553123 ACAGTTGATGGATTTAACGTGGTA 58.447 37.500 0.00 0.00 0.00 3.25
1308 6803 4.394729 ACAGTTGATGGATTTAACGTGGT 58.605 39.130 0.00 0.00 0.00 4.16
1309 6804 6.677781 ATACAGTTGATGGATTTAACGTGG 57.322 37.500 0.00 0.00 0.00 4.94
1350 6851 4.552166 AATTGTCTATATGTTGGCGCAC 57.448 40.909 10.83 0.00 0.00 5.34
1352 6853 5.137403 CGTTAATTGTCTATATGTTGGCGC 58.863 41.667 0.00 0.00 0.00 6.53
1522 7026 5.171339 AGGTCAGCAACTTTATGTCATCT 57.829 39.130 0.00 0.00 0.00 2.90
1635 7145 0.320374 TTAGAGGGAACAGCGTGGTG 59.680 55.000 0.00 0.00 0.00 4.17
1660 7170 6.768483 TCTGATGTCTTCCATTGTCTGTAAA 58.232 36.000 0.00 0.00 32.56 2.01
1661 7171 6.358974 TCTGATGTCTTCCATTGTCTGTAA 57.641 37.500 0.00 0.00 32.56 2.41
1662 7172 6.358974 TTCTGATGTCTTCCATTGTCTGTA 57.641 37.500 0.00 0.00 32.56 2.74
1731 7258 7.933215 ACTCAAAAGTAAGTACAACCAAGTT 57.067 32.000 0.00 0.00 32.59 2.66
1784 7313 2.439507 GGAAACTCCTGATCCTGCCATA 59.560 50.000 0.00 0.00 32.53 2.74
1813 7342 2.040464 ATCCTCCGGGCCATCACT 60.040 61.111 4.39 0.00 0.00 3.41
2321 7859 1.775385 TACATGCTCCACATCCTCGA 58.225 50.000 0.00 0.00 36.64 4.04
2406 7944 5.483174 TCTCCTAGGGAAGTCCAGAATAA 57.517 43.478 9.46 0.00 38.24 1.40
2441 7986 6.491403 GCTCCTATTGGTCATAAATGGTTGAT 59.509 38.462 0.00 0.00 34.23 2.57
2469 8016 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2470 8017 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2471 8018 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2472 8019 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2473 8020 3.581755 TGACAAGTAATTCCGAACGGAG 58.418 45.455 15.34 5.60 46.06 4.63
2474 8021 3.663995 TGACAAGTAATTCCGAACGGA 57.336 42.857 12.04 12.04 43.52 4.69
2475 8022 6.411630 TTTATGACAAGTAATTCCGAACGG 57.588 37.500 6.94 6.94 0.00 4.44
2476 8023 8.785101 CATTTTTATGACAAGTAATTCCGAACG 58.215 33.333 0.00 0.00 0.00 3.95
2477 8024 9.072294 CCATTTTTATGACAAGTAATTCCGAAC 57.928 33.333 0.00 0.00 0.00 3.95
2478 8025 9.015367 TCCATTTTTATGACAAGTAATTCCGAA 57.985 29.630 0.00 0.00 0.00 4.30
2479 8026 8.568676 TCCATTTTTATGACAAGTAATTCCGA 57.431 30.769 0.00 0.00 0.00 4.55
2533 8080 9.770097 GTCCAAGAAATGAATGTATCTAGATGA 57.230 33.333 15.79 2.14 0.00 2.92
2534 8081 8.706936 CGTCCAAGAAATGAATGTATCTAGATG 58.293 37.037 15.79 0.00 0.00 2.90
2535 8082 8.642432 TCGTCCAAGAAATGAATGTATCTAGAT 58.358 33.333 10.73 10.73 0.00 1.98
2536 8083 8.007405 TCGTCCAAGAAATGAATGTATCTAGA 57.993 34.615 0.00 0.00 0.00 2.43
2537 8084 7.923344 ACTCGTCCAAGAAATGAATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
2538 8085 7.782049 ACTCGTCCAAGAAATGAATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
2539 8086 6.644347 ACTCGTCCAAGAAATGAATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
2540 8087 6.910536 ACTCGTCCAAGAAATGAATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
2541 8088 8.964476 ATTACTCGTCCAAGAAATGAATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
2542 8089 8.786826 AATTACTCGTCCAAGAAATGAATGTA 57.213 30.769 0.00 0.00 0.00 2.29
2543 8090 7.148239 GGAATTACTCGTCCAAGAAATGAATGT 60.148 37.037 0.00 0.00 33.79 2.71
2544 8091 7.189512 GGAATTACTCGTCCAAGAAATGAATG 58.810 38.462 0.00 0.00 33.79 2.67
2545 8092 6.037172 CGGAATTACTCGTCCAAGAAATGAAT 59.963 38.462 0.00 0.00 33.10 2.57
2546 8093 5.350365 CGGAATTACTCGTCCAAGAAATGAA 59.650 40.000 0.00 0.00 33.10 2.57
2547 8094 4.868171 CGGAATTACTCGTCCAAGAAATGA 59.132 41.667 0.00 0.00 33.10 2.57
2548 8095 4.868171 TCGGAATTACTCGTCCAAGAAATG 59.132 41.667 0.00 0.00 33.10 2.32
2549 8096 5.080969 TCGGAATTACTCGTCCAAGAAAT 57.919 39.130 0.00 0.00 33.10 2.17
2550 8097 4.524316 TCGGAATTACTCGTCCAAGAAA 57.476 40.909 0.00 0.00 33.10 2.52
2551 8098 4.240096 GTTCGGAATTACTCGTCCAAGAA 58.760 43.478 0.00 0.00 33.10 2.52
2552 8099 3.671433 CGTTCGGAATTACTCGTCCAAGA 60.671 47.826 0.00 0.00 33.10 3.02
2553 8100 2.597305 CGTTCGGAATTACTCGTCCAAG 59.403 50.000 0.00 0.00 33.10 3.61
2554 8101 2.598589 CGTTCGGAATTACTCGTCCAA 58.401 47.619 0.00 0.00 33.10 3.53
2555 8102 1.135315 CCGTTCGGAATTACTCGTCCA 60.135 52.381 5.19 0.00 33.10 4.02
2556 8103 1.133025 TCCGTTCGGAATTACTCGTCC 59.867 52.381 11.66 0.00 0.00 4.79
2557 8104 2.448219 CTCCGTTCGGAATTACTCGTC 58.552 52.381 14.79 0.00 33.41 4.20
2558 8105 1.133790 CCTCCGTTCGGAATTACTCGT 59.866 52.381 14.79 0.00 33.41 4.18
2559 8106 1.535437 CCCTCCGTTCGGAATTACTCG 60.535 57.143 14.79 1.97 33.41 4.18
2560 8107 1.753073 TCCCTCCGTTCGGAATTACTC 59.247 52.381 14.79 0.00 33.41 2.59
2561 8108 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2562 8109 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2563 8110 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2564 8111 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
2565 8112 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
2566 8113 2.734755 TATACTCCCTCCGTTCGGAA 57.265 50.000 14.79 0.00 33.41 4.30
2567 8114 2.965671 ATATACTCCCTCCGTTCGGA 57.034 50.000 13.34 13.34 0.00 4.55
2568 8115 3.683802 AGTATATACTCCCTCCGTTCGG 58.316 50.000 9.71 4.74 0.00 4.30
2569 8116 4.082895 CCAAGTATATACTCCCTCCGTTCG 60.083 50.000 15.72 0.00 34.99 3.95
2570 8117 4.831710 ACCAAGTATATACTCCCTCCGTTC 59.168 45.833 15.72 0.00 34.99 3.95
2571 8118 4.587684 CACCAAGTATATACTCCCTCCGTT 59.412 45.833 15.72 0.00 34.99 4.44
2572 8119 4.150359 CACCAAGTATATACTCCCTCCGT 58.850 47.826 15.72 3.85 34.99 4.69
2573 8120 3.056749 GCACCAAGTATATACTCCCTCCG 60.057 52.174 15.72 4.64 34.99 4.63
2574 8121 3.261137 GGCACCAAGTATATACTCCCTCC 59.739 52.174 15.72 9.79 34.99 4.30
2575 8122 3.056749 CGGCACCAAGTATATACTCCCTC 60.057 52.174 15.72 5.06 34.99 4.30
2576 8123 2.897969 CGGCACCAAGTATATACTCCCT 59.102 50.000 15.72 0.00 34.99 4.20
2577 8124 2.631545 ACGGCACCAAGTATATACTCCC 59.368 50.000 15.72 10.08 34.99 4.30
2578 8125 4.332428 AACGGCACCAAGTATATACTCC 57.668 45.455 15.72 10.94 34.99 3.85
2579 8126 6.742109 TCTAAACGGCACCAAGTATATACTC 58.258 40.000 15.72 3.19 34.99 2.59
2580 8127 6.720112 TCTAAACGGCACCAAGTATATACT 57.280 37.500 9.71 9.71 38.39 2.12
2581 8128 6.367969 CCATCTAAACGGCACCAAGTATATAC 59.632 42.308 4.60 4.60 0.00 1.47
2582 8129 6.042322 ACCATCTAAACGGCACCAAGTATATA 59.958 38.462 0.00 0.00 0.00 0.86
2583 8130 5.163237 ACCATCTAAACGGCACCAAGTATAT 60.163 40.000 0.00 0.00 0.00 0.86
2584 8131 4.162698 ACCATCTAAACGGCACCAAGTATA 59.837 41.667 0.00 0.00 0.00 1.47
2585 8132 3.054655 ACCATCTAAACGGCACCAAGTAT 60.055 43.478 0.00 0.00 0.00 2.12
2586 8133 2.303600 ACCATCTAAACGGCACCAAGTA 59.696 45.455 0.00 0.00 0.00 2.24
2587 8134 1.073284 ACCATCTAAACGGCACCAAGT 59.927 47.619 0.00 0.00 0.00 3.16
2588 8135 1.821216 ACCATCTAAACGGCACCAAG 58.179 50.000 0.00 0.00 0.00 3.61
2589 8136 2.279935 AACCATCTAAACGGCACCAA 57.720 45.000 0.00 0.00 0.00 3.67
2590 8137 2.279935 AAACCATCTAAACGGCACCA 57.720 45.000 0.00 0.00 0.00 4.17
2591 8138 3.653539 AAAAACCATCTAAACGGCACC 57.346 42.857 0.00 0.00 0.00 5.01
2610 8157 9.261180 CGCCTCTATATCATCTTTGTTCTAAAA 57.739 33.333 0.00 0.00 0.00 1.52
2611 8158 8.421784 ACGCCTCTATATCATCTTTGTTCTAAA 58.578 33.333 0.00 0.00 0.00 1.85
2612 8159 7.952671 ACGCCTCTATATCATCTTTGTTCTAA 58.047 34.615 0.00 0.00 0.00 2.10
2613 8160 7.309255 GGACGCCTCTATATCATCTTTGTTCTA 60.309 40.741 0.00 0.00 0.00 2.10
2614 8161 6.412362 ACGCCTCTATATCATCTTTGTTCT 57.588 37.500 0.00 0.00 0.00 3.01
2615 8162 5.635700 GGACGCCTCTATATCATCTTTGTTC 59.364 44.000 0.00 0.00 0.00 3.18
2616 8163 5.542779 GGACGCCTCTATATCATCTTTGTT 58.457 41.667 0.00 0.00 0.00 2.83
2617 8164 4.321304 CGGACGCCTCTATATCATCTTTGT 60.321 45.833 0.00 0.00 0.00 2.83
2618 8165 4.169508 CGGACGCCTCTATATCATCTTTG 58.830 47.826 0.00 0.00 0.00 2.77
2619 8166 3.193691 CCGGACGCCTCTATATCATCTTT 59.806 47.826 0.00 0.00 0.00 2.52
2620 8167 2.755655 CCGGACGCCTCTATATCATCTT 59.244 50.000 0.00 0.00 0.00 2.40
2621 8168 2.370349 CCGGACGCCTCTATATCATCT 58.630 52.381 0.00 0.00 0.00 2.90
2622 8169 1.202313 GCCGGACGCCTCTATATCATC 60.202 57.143 5.05 0.00 0.00 2.92
2623 8170 0.818296 GCCGGACGCCTCTATATCAT 59.182 55.000 5.05 0.00 0.00 2.45
2624 8171 0.251209 AGCCGGACGCCTCTATATCA 60.251 55.000 5.05 0.00 38.78 2.15
2625 8172 0.889306 AAGCCGGACGCCTCTATATC 59.111 55.000 5.05 0.00 38.78 1.63
2626 8173 1.339097 AAAGCCGGACGCCTCTATAT 58.661 50.000 5.05 0.00 38.78 0.86
2627 8174 1.985473 TAAAGCCGGACGCCTCTATA 58.015 50.000 5.05 0.00 38.78 1.31
2628 8175 1.117150 TTAAAGCCGGACGCCTCTAT 58.883 50.000 5.05 0.00 38.78 1.98
2629 8176 0.896923 TTTAAAGCCGGACGCCTCTA 59.103 50.000 5.05 0.00 38.78 2.43
2630 8177 0.252197 ATTTAAAGCCGGACGCCTCT 59.748 50.000 5.05 0.00 38.78 3.69
2631 8178 1.092348 AATTTAAAGCCGGACGCCTC 58.908 50.000 5.05 0.00 38.78 4.70
2632 8179 2.093341 TCTAATTTAAAGCCGGACGCCT 60.093 45.455 5.05 0.00 38.78 5.52
2633 8180 2.282407 TCTAATTTAAAGCCGGACGCC 58.718 47.619 5.05 0.00 38.78 5.68
2634 8181 3.558418 TGATCTAATTTAAAGCCGGACGC 59.442 43.478 5.05 0.00 37.98 5.19
2635 8182 4.809426 ACTGATCTAATTTAAAGCCGGACG 59.191 41.667 5.05 0.00 0.00 4.79
2636 8183 6.985059 AGTACTGATCTAATTTAAAGCCGGAC 59.015 38.462 5.05 0.00 0.00 4.79
2637 8184 7.120923 AGTACTGATCTAATTTAAAGCCGGA 57.879 36.000 5.05 0.00 0.00 5.14
2638 8185 6.144080 CGAGTACTGATCTAATTTAAAGCCGG 59.856 42.308 0.00 0.00 0.00 6.13
2639 8186 6.144080 CCGAGTACTGATCTAATTTAAAGCCG 59.856 42.308 0.00 0.00 0.00 5.52
2640 8187 6.073711 GCCGAGTACTGATCTAATTTAAAGCC 60.074 42.308 0.00 0.00 0.00 4.35
2641 8188 6.345882 CGCCGAGTACTGATCTAATTTAAAGC 60.346 42.308 0.00 0.00 0.00 3.51
2642 8189 6.345882 GCGCCGAGTACTGATCTAATTTAAAG 60.346 42.308 0.00 0.00 0.00 1.85
2643 8190 5.461078 GCGCCGAGTACTGATCTAATTTAAA 59.539 40.000 0.00 0.00 0.00 1.52
2644 8191 4.980434 GCGCCGAGTACTGATCTAATTTAA 59.020 41.667 0.00 0.00 0.00 1.52
2645 8192 4.543692 GCGCCGAGTACTGATCTAATTTA 58.456 43.478 0.00 0.00 0.00 1.40
2646 8193 3.381949 GCGCCGAGTACTGATCTAATTT 58.618 45.455 0.00 0.00 0.00 1.82
2647 8194 2.288273 GGCGCCGAGTACTGATCTAATT 60.288 50.000 12.58 0.00 0.00 1.40
2648 8195 1.269998 GGCGCCGAGTACTGATCTAAT 59.730 52.381 12.58 0.00 0.00 1.73
2649 8196 0.666913 GGCGCCGAGTACTGATCTAA 59.333 55.000 12.58 0.00 0.00 2.10
2650 8197 0.464916 TGGCGCCGAGTACTGATCTA 60.465 55.000 23.90 0.00 0.00 1.98
2651 8198 1.729470 CTGGCGCCGAGTACTGATCT 61.729 60.000 23.90 0.00 0.00 2.75
2652 8199 1.299468 CTGGCGCCGAGTACTGATC 60.299 63.158 23.90 0.00 0.00 2.92
2653 8200 2.808315 CTGGCGCCGAGTACTGAT 59.192 61.111 23.90 0.00 0.00 2.90
2654 8201 4.129737 GCTGGCGCCGAGTACTGA 62.130 66.667 23.90 0.00 0.00 3.41
2681 8228 2.642700 CGACCGGCCCAAACTTTG 59.357 61.111 0.00 0.00 0.00 2.77
2682 8229 2.596338 CCGACCGGCCCAAACTTT 60.596 61.111 0.00 0.00 0.00 2.66
2700 8247 4.547367 GGATCGGAAGGCGTGGGG 62.547 72.222 0.00 0.00 0.00 4.96
2701 8248 2.925162 GAAGGATCGGAAGGCGTGGG 62.925 65.000 0.00 0.00 0.00 4.61
2702 8249 1.521681 GAAGGATCGGAAGGCGTGG 60.522 63.158 0.00 0.00 0.00 4.94
2703 8250 1.521681 GGAAGGATCGGAAGGCGTG 60.522 63.158 0.00 0.00 0.00 5.34
2704 8251 1.686110 AGGAAGGATCGGAAGGCGT 60.686 57.895 0.00 0.00 0.00 5.68
2705 8252 1.227380 CAGGAAGGATCGGAAGGCG 60.227 63.158 0.00 0.00 0.00 5.52
2706 8253 0.253327 AACAGGAAGGATCGGAAGGC 59.747 55.000 0.00 0.00 0.00 4.35
2707 8254 1.279271 ACAACAGGAAGGATCGGAAGG 59.721 52.381 0.00 0.00 0.00 3.46
2708 8255 2.770164 ACAACAGGAAGGATCGGAAG 57.230 50.000 0.00 0.00 0.00 3.46
2709 8256 2.093658 GCTACAACAGGAAGGATCGGAA 60.094 50.000 0.00 0.00 0.00 4.30
2710 8257 1.480954 GCTACAACAGGAAGGATCGGA 59.519 52.381 0.00 0.00 0.00 4.55
2711 8258 1.473434 GGCTACAACAGGAAGGATCGG 60.473 57.143 0.00 0.00 0.00 4.18
2712 8259 1.802880 CGGCTACAACAGGAAGGATCG 60.803 57.143 0.00 0.00 0.00 3.69
2713 8260 1.207329 ACGGCTACAACAGGAAGGATC 59.793 52.381 0.00 0.00 0.00 3.36
2714 8261 1.207329 GACGGCTACAACAGGAAGGAT 59.793 52.381 0.00 0.00 0.00 3.24
2715 8262 0.606604 GACGGCTACAACAGGAAGGA 59.393 55.000 0.00 0.00 0.00 3.36
2716 8263 0.391263 GGACGGCTACAACAGGAAGG 60.391 60.000 0.00 0.00 0.00 3.46
2717 8264 0.736325 CGGACGGCTACAACAGGAAG 60.736 60.000 0.00 0.00 0.00 3.46
2718 8265 1.180456 TCGGACGGCTACAACAGGAA 61.180 55.000 0.00 0.00 0.00 3.36
2719 8266 0.968901 ATCGGACGGCTACAACAGGA 60.969 55.000 0.00 0.00 0.00 3.86
2720 8267 0.527817 GATCGGACGGCTACAACAGG 60.528 60.000 0.00 0.00 0.00 4.00
2721 8268 0.866061 CGATCGGACGGCTACAACAG 60.866 60.000 7.38 0.00 0.00 3.16
2722 8269 1.138036 CGATCGGACGGCTACAACA 59.862 57.895 7.38 0.00 0.00 3.33
2723 8270 0.591741 CTCGATCGGACGGCTACAAC 60.592 60.000 16.41 0.00 0.00 3.32
2724 8271 1.725665 CTCGATCGGACGGCTACAA 59.274 57.895 16.41 0.00 0.00 2.41
2725 8272 2.831366 GCTCGATCGGACGGCTACA 61.831 63.158 16.41 0.00 0.00 2.74
2726 8273 2.051166 GCTCGATCGGACGGCTAC 60.051 66.667 16.41 0.00 0.00 3.58
2727 8274 3.285215 GGCTCGATCGGACGGCTA 61.285 66.667 16.41 0.00 32.95 3.93
2729 8276 4.632458 GAGGCTCGATCGGACGGC 62.632 72.222 16.41 15.58 0.00 5.68
2730 8277 2.899044 GAGAGGCTCGATCGGACGG 61.899 68.421 16.41 4.73 0.00 4.79
2731 8278 2.634777 GAGAGGCTCGATCGGACG 59.365 66.667 16.41 5.47 0.00 4.79
2740 8287 1.062845 GAGCACGTACGAGAGGCTC 59.937 63.158 24.41 25.69 43.41 4.70
2741 8288 2.408241 GGAGCACGTACGAGAGGCT 61.408 63.158 24.41 22.50 37.56 4.58
2742 8289 1.935327 AAGGAGCACGTACGAGAGGC 61.935 60.000 24.41 18.36 0.00 4.70
2743 8290 0.099082 GAAGGAGCACGTACGAGAGG 59.901 60.000 24.41 9.30 0.00 3.69
2744 8291 1.088306 AGAAGGAGCACGTACGAGAG 58.912 55.000 24.41 12.23 0.00 3.20
2745 8292 1.467734 GAAGAAGGAGCACGTACGAGA 59.532 52.381 24.41 0.00 0.00 4.04
2746 8293 1.469308 AGAAGAAGGAGCACGTACGAG 59.531 52.381 24.41 16.14 0.00 4.18
2747 8294 1.467734 GAGAAGAAGGAGCACGTACGA 59.532 52.381 24.41 0.00 0.00 3.43
2748 8295 1.467713 GGAGAAGAAGGAGCACGTACG 60.468 57.143 15.01 15.01 0.00 3.67
2749 8296 1.135053 GGGAGAAGAAGGAGCACGTAC 60.135 57.143 0.00 0.00 0.00 3.67
2750 8297 1.183549 GGGAGAAGAAGGAGCACGTA 58.816 55.000 0.00 0.00 0.00 3.57
2751 8298 1.545706 GGGGAGAAGAAGGAGCACGT 61.546 60.000 0.00 0.00 0.00 4.49
2752 8299 1.219393 GGGGAGAAGAAGGAGCACG 59.781 63.158 0.00 0.00 0.00 5.34
2753 8300 1.219393 CGGGGAGAAGAAGGAGCAC 59.781 63.158 0.00 0.00 0.00 4.40
2754 8301 0.325671 ATCGGGGAGAAGAAGGAGCA 60.326 55.000 0.00 0.00 0.00 4.26
2755 8302 0.105778 CATCGGGGAGAAGAAGGAGC 59.894 60.000 0.00 0.00 0.00 4.70
2756 8303 0.105778 GCATCGGGGAGAAGAAGGAG 59.894 60.000 0.00 0.00 0.00 3.69
2757 8304 0.617535 TGCATCGGGGAGAAGAAGGA 60.618 55.000 0.00 0.00 0.00 3.36
2758 8305 0.253044 TTGCATCGGGGAGAAGAAGG 59.747 55.000 0.00 0.00 0.00 3.46
2759 8306 2.113860 TTTGCATCGGGGAGAAGAAG 57.886 50.000 0.00 0.00 0.00 2.85
2760 8307 2.577606 TTTTGCATCGGGGAGAAGAA 57.422 45.000 0.00 0.00 0.00 2.52
2761 8308 2.806945 ATTTTGCATCGGGGAGAAGA 57.193 45.000 0.00 0.00 0.00 2.87
2762 8309 3.503748 GGATATTTTGCATCGGGGAGAAG 59.496 47.826 0.00 0.00 0.00 2.85
2763 8310 3.138283 AGGATATTTTGCATCGGGGAGAA 59.862 43.478 0.00 0.00 0.00 2.87
2764 8311 2.711009 AGGATATTTTGCATCGGGGAGA 59.289 45.455 0.00 0.00 0.00 3.71
2765 8312 3.146104 AGGATATTTTGCATCGGGGAG 57.854 47.619 0.00 0.00 0.00 4.30
2766 8313 3.559171 GCTAGGATATTTTGCATCGGGGA 60.559 47.826 0.00 0.00 0.00 4.81
2767 8314 2.749621 GCTAGGATATTTTGCATCGGGG 59.250 50.000 0.00 0.00 0.00 5.73
2768 8315 2.416547 CGCTAGGATATTTTGCATCGGG 59.583 50.000 0.00 0.00 0.00 5.14
2769 8316 2.159653 GCGCTAGGATATTTTGCATCGG 60.160 50.000 0.00 0.00 0.00 4.18
2770 8317 2.159653 GGCGCTAGGATATTTTGCATCG 60.160 50.000 7.64 0.00 0.00 3.84
2771 8318 3.077359 AGGCGCTAGGATATTTTGCATC 58.923 45.455 7.64 0.00 0.00 3.91
2772 8319 2.816087 CAGGCGCTAGGATATTTTGCAT 59.184 45.455 7.64 0.00 0.00 3.96
2773 8320 2.158827 TCAGGCGCTAGGATATTTTGCA 60.159 45.455 7.64 0.00 0.00 4.08
2774 8321 2.494059 TCAGGCGCTAGGATATTTTGC 58.506 47.619 7.64 0.00 0.00 3.68
2775 8322 3.369147 CGATCAGGCGCTAGGATATTTTG 59.631 47.826 7.64 0.00 0.00 2.44
2776 8323 3.589988 CGATCAGGCGCTAGGATATTTT 58.410 45.455 7.64 0.00 0.00 1.82
2777 8324 2.093973 CCGATCAGGCGCTAGGATATTT 60.094 50.000 7.64 0.00 0.00 1.40
2778 8325 1.478510 CCGATCAGGCGCTAGGATATT 59.521 52.381 7.64 0.00 0.00 1.28
2779 8326 1.107114 CCGATCAGGCGCTAGGATAT 58.893 55.000 7.64 0.00 0.00 1.63
2780 8327 0.251209 ACCGATCAGGCGCTAGGATA 60.251 55.000 7.64 0.00 46.52 2.59
2781 8328 1.528292 GACCGATCAGGCGCTAGGAT 61.528 60.000 7.64 8.08 46.52 3.24
2782 8329 2.123854 ACCGATCAGGCGCTAGGA 60.124 61.111 7.64 2.60 46.52 2.94
2783 8330 2.336809 GACCGATCAGGCGCTAGG 59.663 66.667 7.64 0.00 46.52 3.02
2784 8331 2.050895 CGACCGATCAGGCGCTAG 60.051 66.667 7.64 0.00 46.52 3.42
2785 8332 3.592814 CCGACCGATCAGGCGCTA 61.593 66.667 7.64 0.00 46.52 4.26
2787 8334 4.508128 TTCCGACCGATCAGGCGC 62.508 66.667 0.00 0.00 46.52 6.53
2788 8335 2.582498 GTTCCGACCGATCAGGCG 60.582 66.667 0.00 0.00 46.52 5.52
2791 8338 0.450583 TTCTCGTTCCGACCGATCAG 59.549 55.000 0.00 0.00 33.27 2.90
2823 8370 2.953640 GTTTCACAACGCGGTTGATA 57.046 45.000 22.26 10.59 45.28 2.15
2838 8385 1.459975 GACCGAAAGAGGAAGCGTTTC 59.540 52.381 3.02 3.02 34.73 2.78
2849 8396 2.868583 CGTATCCTCGTAGACCGAAAGA 59.131 50.000 0.00 0.00 46.75 2.52
2866 8413 0.606604 GGGAGTGTGTGTCCACGTAT 59.393 55.000 0.00 0.00 44.92 3.06
2887 8434 4.471904 AGGAGATGCATAACAACGAGAA 57.528 40.909 0.00 0.00 0.00 2.87
2896 8443 7.416101 CGCAAGATCTATCTAGGAGATGCATAA 60.416 40.741 0.00 0.00 35.65 1.90
2932 8479 7.545265 ACGTAGCATGCAATTTCACAAATATTT 59.455 29.630 21.98 0.00 0.00 1.40
2940 8489 3.608073 GGAAACGTAGCATGCAATTTCAC 59.392 43.478 21.98 12.50 0.00 3.18
2982 8531 4.142160 TGCATATCATCTACGCATAGACCC 60.142 45.833 0.00 0.00 40.32 4.46
3075 8624 2.017049 GCTTCATCCAACAATACCGCT 58.983 47.619 0.00 0.00 0.00 5.52
3180 8729 1.843851 AGTTGGAGAAACAGACACCCA 59.156 47.619 0.00 0.00 41.61 4.51
3259 8809 7.008266 GCATCAAAACTACAACGGTGATTTATG 59.992 37.037 7.88 7.56 0.00 1.90
3275 8825 5.302360 TGTTCTTACCTACGCATCAAAACT 58.698 37.500 0.00 0.00 0.00 2.66
3306 8856 1.261938 TGGCTGCTACGGGCTTCTAA 61.262 55.000 0.00 0.00 42.39 2.10
3379 8931 9.227777 CCATCATGTCTTATATCACATCACAAT 57.772 33.333 0.00 0.00 30.48 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.