Multiple sequence alignment - TraesCS3B01G204000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G204000 chr3B 100.000 3296 0 0 1 3296 237974704 237971409 0.000000e+00 6087.0
1 TraesCS3B01G204000 chr3B 91.704 1579 83 18 1737 3296 237733796 237732247 0.000000e+00 2146.0
2 TraesCS3B01G204000 chr3B 88.740 1572 142 27 1736 3291 238113156 238111604 0.000000e+00 1890.0
3 TraesCS3B01G204000 chr3B 92.598 743 44 4 938 1680 237734548 237733817 0.000000e+00 1057.0
4 TraesCS3B01G204000 chr3B 85.057 522 46 17 1177 1682 238113670 238113165 1.370000e-138 503.0
5 TraesCS3B01G204000 chr3B 98.913 92 1 0 521 612 237976735 237976826 7.320000e-37 165.0
6 TraesCS3B01G204000 chr3D 93.459 2385 108 25 926 3291 161498764 161496409 0.000000e+00 3496.0
7 TraesCS3B01G204000 chr3D 93.219 1578 79 13 1737 3296 161401331 161399764 0.000000e+00 2296.0
8 TraesCS3B01G204000 chr3D 88.946 1565 141 26 1736 3291 161596221 161594680 0.000000e+00 1903.0
9 TraesCS3B01G204000 chr3D 89.962 528 35 7 1170 1682 161401874 161401350 0.000000e+00 665.0
10 TraesCS3B01G204000 chr3D 88.717 452 44 3 1231 1682 161596674 161596230 2.240000e-151 545.0
11 TraesCS3B01G204000 chr3D 91.620 179 4 2 926 1104 161402745 161402578 1.530000e-58 237.0
12 TraesCS3B01G204000 chr3D 89.691 97 9 1 937 1032 161596853 161596757 4.470000e-24 122.0
13 TraesCS3B01G204000 chr3A 91.577 1579 103 15 1737 3296 190094122 190092555 0.000000e+00 2152.0
14 TraesCS3B01G204000 chr3A 90.932 1588 108 24 1718 3289 191006623 191005056 0.000000e+00 2102.0
15 TraesCS3B01G204000 chr3A 87.500 1584 145 35 1736 3291 190228524 190226966 0.000000e+00 1779.0
16 TraesCS3B01G204000 chr3A 87.556 1559 145 32 1736 3268 191253506 191251971 0.000000e+00 1759.0
17 TraesCS3B01G204000 chr3A 96.982 762 21 1 926 1687 191007871 191007112 0.000000e+00 1279.0
18 TraesCS3B01G204000 chr3A 94.628 819 37 3 1737 2555 188112691 188113502 0.000000e+00 1262.0
19 TraesCS3B01G204000 chr3A 90.551 762 53 8 935 1681 190094899 190094142 0.000000e+00 990.0
20 TraesCS3B01G204000 chr3A 89.077 769 44 22 2548 3296 188113380 188114128 0.000000e+00 918.0
21 TraesCS3B01G204000 chr3A 95.161 434 18 2 1 431 707135496 707135063 0.000000e+00 682.0
22 TraesCS3B01G204000 chr3A 88.973 526 32 9 926 1435 188101241 188101756 7.760000e-176 627.0
23 TraesCS3B01G204000 chr3A 86.497 511 49 11 434 931 707134968 707134465 8.040000e-151 544.0
24 TraesCS3B01G204000 chr3A 88.079 453 44 4 1231 1683 190228974 190228532 2.250000e-146 529.0
25 TraesCS3B01G204000 chr3A 88.079 453 44 4 1231 1683 191253956 191253514 2.250000e-146 529.0
26 TraesCS3B01G204000 chr3A 92.885 253 15 1 1427 1679 188112420 188112669 6.720000e-97 364.0
27 TraesCS3B01G204000 chr3A 81.633 441 36 22 521 917 707170089 707170528 1.140000e-84 324.0
28 TraesCS3B01G204000 chr3A 92.708 96 7 0 937 1032 190229152 190229057 4.430000e-29 139.0
29 TraesCS3B01G204000 chr3A 92.708 96 7 0 937 1032 191254134 191254039 4.430000e-29 139.0
30 TraesCS3B01G204000 chr3A 100.000 49 0 0 1673 1721 191006650 191006602 1.260000e-14 91.6
31 TraesCS3B01G204000 chr7B 94.624 930 34 7 1 917 399793078 399792152 0.000000e+00 1426.0
32 TraesCS3B01G204000 chr7B 89.437 284 19 4 645 917 399795194 399795477 6.770000e-92 348.0
33 TraesCS3B01G204000 chr7B 97.802 91 2 0 522 612 399795109 399795199 1.220000e-34 158.0
34 TraesCS3B01G204000 chr1B 84.712 399 39 6 55 432 626225350 626224953 2.400000e-101 379.0
35 TraesCS3B01G204000 chr1B 85.153 229 32 2 197 424 626221726 626221499 1.980000e-57 233.0
36 TraesCS3B01G204000 chr1B 96.875 64 2 0 521 584 626229920 626229983 1.250000e-19 108.0
37 TraesCS3B01G204000 chr1A 87.651 332 27 4 55 379 549419028 549418704 1.120000e-99 374.0
38 TraesCS3B01G204000 chr1D 83.776 339 36 12 55 391 455783298 455782977 1.490000e-78 303.0
39 TraesCS3B01G204000 chr1D 83.819 309 33 14 627 919 209472969 209472662 9.010000e-71 278.0
40 TraesCS3B01G204000 chr1D 92.982 57 4 0 528 584 455787413 455787469 2.110000e-12 84.2
41 TraesCS3B01G204000 chr2D 88.446 251 16 6 682 921 460567609 460567857 1.160000e-74 291.0
42 TraesCS3B01G204000 chr2D 82.911 316 31 15 618 917 460366781 460366473 2.520000e-66 263.0
43 TraesCS3B01G204000 chr6D 83.228 316 32 13 622 918 55746147 55746460 1.510000e-68 270.0
44 TraesCS3B01G204000 chr2B 88.479 217 19 2 706 917 545150510 545150725 1.170000e-64 257.0
45 TraesCS3B01G204000 chr6B 85.484 248 23 6 683 918 659508159 659507913 2.540000e-61 246.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G204000 chr3B 237971409 237974704 3295 True 6087.000000 6087 100.000000 1 3296 1 chr3B.!!$R1 3295
1 TraesCS3B01G204000 chr3B 237732247 237734548 2301 True 1601.500000 2146 92.151000 938 3296 2 chr3B.!!$R2 2358
2 TraesCS3B01G204000 chr3B 238111604 238113670 2066 True 1196.500000 1890 86.898500 1177 3291 2 chr3B.!!$R3 2114
3 TraesCS3B01G204000 chr3D 161496409 161498764 2355 True 3496.000000 3496 93.459000 926 3291 1 chr3D.!!$R1 2365
4 TraesCS3B01G204000 chr3D 161399764 161402745 2981 True 1066.000000 2296 91.600333 926 3296 3 chr3D.!!$R2 2370
5 TraesCS3B01G204000 chr3D 161594680 161596853 2173 True 856.666667 1903 89.118000 937 3291 3 chr3D.!!$R3 2354
6 TraesCS3B01G204000 chr3A 190092555 190094899 2344 True 1571.000000 2152 91.064000 935 3296 2 chr3A.!!$R1 2361
7 TraesCS3B01G204000 chr3A 191005056 191007871 2815 True 1157.533333 2102 95.971333 926 3289 3 chr3A.!!$R3 2363
8 TraesCS3B01G204000 chr3A 188112420 188114128 1708 False 848.000000 1262 92.196667 1427 3296 3 chr3A.!!$F3 1869
9 TraesCS3B01G204000 chr3A 190226966 190229152 2186 True 815.666667 1779 89.429000 937 3291 3 chr3A.!!$R2 2354
10 TraesCS3B01G204000 chr3A 191251971 191254134 2163 True 809.000000 1759 89.447667 937 3268 3 chr3A.!!$R4 2331
11 TraesCS3B01G204000 chr3A 188101241 188101756 515 False 627.000000 627 88.973000 926 1435 1 chr3A.!!$F1 509
12 TraesCS3B01G204000 chr3A 707134465 707135496 1031 True 613.000000 682 90.829000 1 931 2 chr3A.!!$R5 930
13 TraesCS3B01G204000 chr7B 399792152 399793078 926 True 1426.000000 1426 94.624000 1 917 1 chr7B.!!$R1 916
14 TraesCS3B01G204000 chr1B 626221499 626225350 3851 True 306.000000 379 84.932500 55 432 2 chr1B.!!$R1 377

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
558 591 0.040958 GTTCTTGCTTCTGCGTGGTG 60.041 55.0 0.00 0.0 43.34 4.17 F
795 828 0.096976 CGGCCAAGTCAGCAAATACG 59.903 55.0 2.24 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1875 4050 2.029918 GCTGCGAAAACCTTCCAGATTT 60.030 45.455 0.0 0.0 34.39 2.17 R
2744 5093 3.062763 AGTTGAGAACACTGATCTTGCG 58.937 45.455 0.0 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 154 4.533707 AGAACAGGATGGAGATTCAGTTGA 59.466 41.667 0.00 0.00 43.62 3.18
184 203 1.122019 AGTTTCAGCACGGGGAGACT 61.122 55.000 0.00 0.00 0.00 3.24
192 213 0.679505 CACGGGGAGACTCAAAGTGA 59.320 55.000 14.42 0.00 0.00 3.41
229 250 5.181245 CGGAAAATCAAGTAGAAGCAAGGAA 59.819 40.000 0.00 0.00 0.00 3.36
435 468 3.532155 CTCCCTCCTCTTCCGGCG 61.532 72.222 0.00 0.00 0.00 6.46
436 469 4.056584 TCCCTCCTCTTCCGGCGA 62.057 66.667 9.30 0.00 0.00 5.54
437 470 3.839432 CCCTCCTCTTCCGGCGAC 61.839 72.222 9.30 0.00 0.00 5.19
488 521 4.577246 GCAGCCGAGGTCGCCTAG 62.577 72.222 0.00 0.00 38.18 3.02
518 551 4.673375 CCACTGCTGCTTGCCCCT 62.673 66.667 0.00 0.00 42.00 4.79
519 552 3.060615 CACTGCTGCTTGCCCCTC 61.061 66.667 0.00 0.00 42.00 4.30
520 553 4.711949 ACTGCTGCTTGCCCCTCG 62.712 66.667 0.00 0.00 42.00 4.63
543 576 4.124851 CCAGTCAGGCTAAATACGTTCT 57.875 45.455 0.00 0.00 0.00 3.01
544 577 4.504858 CCAGTCAGGCTAAATACGTTCTT 58.495 43.478 0.00 0.00 0.00 2.52
545 578 4.330074 CCAGTCAGGCTAAATACGTTCTTG 59.670 45.833 0.00 0.00 0.00 3.02
546 579 3.933332 AGTCAGGCTAAATACGTTCTTGC 59.067 43.478 0.00 0.00 0.00 4.01
547 580 3.933332 GTCAGGCTAAATACGTTCTTGCT 59.067 43.478 0.00 0.00 0.00 3.91
548 581 4.392138 GTCAGGCTAAATACGTTCTTGCTT 59.608 41.667 0.00 0.00 0.00 3.91
549 582 4.630069 TCAGGCTAAATACGTTCTTGCTTC 59.370 41.667 0.00 0.00 0.00 3.86
550 583 4.631813 CAGGCTAAATACGTTCTTGCTTCT 59.368 41.667 0.00 0.00 0.00 2.85
551 584 4.631813 AGGCTAAATACGTTCTTGCTTCTG 59.368 41.667 0.00 0.00 0.00 3.02
552 585 4.335272 GCTAAATACGTTCTTGCTTCTGC 58.665 43.478 0.00 0.00 40.20 4.26
553 586 3.455619 AAATACGTTCTTGCTTCTGCG 57.544 42.857 0.00 0.00 43.34 5.18
554 587 2.080286 ATACGTTCTTGCTTCTGCGT 57.920 45.000 0.00 0.00 43.34 5.24
555 588 1.136690 TACGTTCTTGCTTCTGCGTG 58.863 50.000 0.00 0.00 43.34 5.34
556 589 1.205064 CGTTCTTGCTTCTGCGTGG 59.795 57.895 0.00 0.00 43.34 4.94
557 590 1.498865 CGTTCTTGCTTCTGCGTGGT 61.499 55.000 0.00 0.00 43.34 4.16
558 591 0.040958 GTTCTTGCTTCTGCGTGGTG 60.041 55.000 0.00 0.00 43.34 4.17
559 592 0.179059 TTCTTGCTTCTGCGTGGTGA 60.179 50.000 0.00 0.00 43.34 4.02
560 593 0.880278 TCTTGCTTCTGCGTGGTGAC 60.880 55.000 0.00 0.00 43.34 3.67
561 594 1.153269 TTGCTTCTGCGTGGTGACA 60.153 52.632 0.00 0.00 43.34 3.58
562 595 0.746204 TTGCTTCTGCGTGGTGACAA 60.746 50.000 0.00 0.00 43.34 3.18
563 596 0.746204 TGCTTCTGCGTGGTGACAAA 60.746 50.000 0.00 0.00 43.34 2.83
564 597 0.317020 GCTTCTGCGTGGTGACAAAC 60.317 55.000 0.00 0.00 46.06 2.93
572 605 4.397348 GGTGACAAACCGAGGCAT 57.603 55.556 0.00 0.00 39.81 4.40
573 606 1.875963 GGTGACAAACCGAGGCATG 59.124 57.895 0.00 0.00 39.81 4.06
574 607 1.586154 GGTGACAAACCGAGGCATGG 61.586 60.000 0.00 0.00 39.81 3.66
575 608 1.971167 TGACAAACCGAGGCATGGC 60.971 57.895 12.14 12.14 0.00 4.40
576 609 1.971167 GACAAACCGAGGCATGGCA 60.971 57.895 22.64 0.00 0.00 4.92
577 610 1.523154 GACAAACCGAGGCATGGCAA 61.523 55.000 22.64 0.00 0.00 4.52
578 611 1.080569 CAAACCGAGGCATGGCAAC 60.081 57.895 22.64 13.58 0.00 4.17
579 612 1.228552 AAACCGAGGCATGGCAACT 60.229 52.632 22.64 0.00 37.61 3.16
580 613 1.244019 AAACCGAGGCATGGCAACTC 61.244 55.000 22.64 9.44 37.61 3.01
581 614 2.825836 CCGAGGCATGGCAACTCC 60.826 66.667 22.64 0.00 37.61 3.85
589 622 4.243008 TGGCAACTCCAACGGCGA 62.243 61.111 16.62 0.00 43.21 5.54
590 623 3.423154 GGCAACTCCAACGGCGAG 61.423 66.667 16.62 2.02 34.01 5.03
591 624 4.090057 GCAACTCCAACGGCGAGC 62.090 66.667 16.62 0.14 0.00 5.03
592 625 3.777925 CAACTCCAACGGCGAGCG 61.778 66.667 16.62 0.13 0.00 5.03
597 630 4.745751 CCAACGGCGAGCGGGTAA 62.746 66.667 16.62 0.00 0.00 2.85
598 631 3.484547 CAACGGCGAGCGGGTAAC 61.485 66.667 16.62 0.00 0.00 2.50
599 632 3.993584 AACGGCGAGCGGGTAACA 61.994 61.111 16.62 0.00 39.74 2.41
600 633 3.518419 AACGGCGAGCGGGTAACAA 62.518 57.895 16.62 0.00 39.74 2.83
601 634 2.739287 CGGCGAGCGGGTAACAAA 60.739 61.111 0.00 0.00 39.74 2.83
602 635 2.865308 GGCGAGCGGGTAACAAAC 59.135 61.111 0.00 0.00 39.74 2.93
610 643 2.559330 GGTAACAAACCGGCAGCG 59.441 61.111 0.00 0.00 38.88 5.18
611 644 1.962306 GGTAACAAACCGGCAGCGA 60.962 57.895 0.00 0.00 38.88 4.93
612 645 1.205820 GTAACAAACCGGCAGCGAC 59.794 57.895 0.00 0.00 0.00 5.19
613 646 2.311701 TAACAAACCGGCAGCGACG 61.312 57.895 0.00 0.00 0.00 5.12
614 647 2.696409 TAACAAACCGGCAGCGACGA 62.696 55.000 0.00 0.00 35.20 4.20
615 648 3.777925 CAAACCGGCAGCGACGAG 61.778 66.667 0.00 0.00 35.20 4.18
622 655 4.121669 GCAGCGACGAGGAGCAGA 62.122 66.667 0.00 0.00 35.48 4.26
623 656 2.101965 CAGCGACGAGGAGCAGAG 59.898 66.667 0.00 0.00 35.48 3.35
624 657 2.045829 AGCGACGAGGAGCAGAGA 60.046 61.111 0.00 0.00 35.48 3.10
625 658 2.112198 AGCGACGAGGAGCAGAGAG 61.112 63.158 0.00 0.00 35.48 3.20
626 659 3.106552 CGACGAGGAGCAGAGAGG 58.893 66.667 0.00 0.00 0.00 3.69
627 660 2.477176 CGACGAGGAGCAGAGAGGG 61.477 68.421 0.00 0.00 0.00 4.30
628 661 1.379309 GACGAGGAGCAGAGAGGGT 60.379 63.158 0.00 0.00 0.00 4.34
629 662 1.662438 GACGAGGAGCAGAGAGGGTG 61.662 65.000 0.00 0.00 0.00 4.61
630 663 2.899505 GAGGAGCAGAGAGGGTGC 59.100 66.667 0.00 0.00 41.54 5.01
631 664 3.073735 AGGAGCAGAGAGGGTGCG 61.074 66.667 0.00 0.00 46.06 5.34
632 665 4.154347 GGAGCAGAGAGGGTGCGG 62.154 72.222 0.00 0.00 46.06 5.69
633 666 3.071206 GAGCAGAGAGGGTGCGGA 61.071 66.667 0.00 0.00 46.06 5.54
634 667 3.073735 AGCAGAGAGGGTGCGGAG 61.074 66.667 0.00 0.00 46.06 4.63
635 668 4.154347 GCAGAGAGGGTGCGGAGG 62.154 72.222 0.00 0.00 0.00 4.30
636 669 2.363018 CAGAGAGGGTGCGGAGGA 60.363 66.667 0.00 0.00 0.00 3.71
637 670 2.043450 AGAGAGGGTGCGGAGGAG 60.043 66.667 0.00 0.00 0.00 3.69
638 671 2.043852 GAGAGGGTGCGGAGGAGA 60.044 66.667 0.00 0.00 0.00 3.71
639 672 2.043450 AGAGGGTGCGGAGGAGAG 60.043 66.667 0.00 0.00 0.00 3.20
640 673 3.151022 GAGGGTGCGGAGGAGAGG 61.151 72.222 0.00 0.00 0.00 3.69
641 674 3.663815 GAGGGTGCGGAGGAGAGGA 62.664 68.421 0.00 0.00 0.00 3.71
642 675 3.151022 GGGTGCGGAGGAGAGGAG 61.151 72.222 0.00 0.00 0.00 3.69
643 676 2.043852 GGTGCGGAGGAGAGGAGA 60.044 66.667 0.00 0.00 0.00 3.71
644 677 2.419739 GGTGCGGAGGAGAGGAGAC 61.420 68.421 0.00 0.00 0.00 3.36
645 678 1.679305 GTGCGGAGGAGAGGAGACA 60.679 63.158 0.00 0.00 0.00 3.41
646 679 1.379176 TGCGGAGGAGAGGAGACAG 60.379 63.158 0.00 0.00 0.00 3.51
647 680 2.781158 GCGGAGGAGAGGAGACAGC 61.781 68.421 0.00 0.00 0.00 4.40
648 681 2.477176 CGGAGGAGAGGAGACAGCG 61.477 68.421 0.00 0.00 0.00 5.18
649 682 1.077357 GGAGGAGAGGAGACAGCGA 60.077 63.158 0.00 0.00 0.00 4.93
650 683 1.101049 GGAGGAGAGGAGACAGCGAG 61.101 65.000 0.00 0.00 0.00 5.03
651 684 1.724582 GAGGAGAGGAGACAGCGAGC 61.725 65.000 0.00 0.00 0.00 5.03
652 685 2.407210 GAGAGGAGACAGCGAGCG 59.593 66.667 0.00 0.00 0.00 5.03
653 686 3.119709 GAGAGGAGACAGCGAGCGG 62.120 68.421 0.00 0.00 0.00 5.52
654 687 4.200283 GAGGAGACAGCGAGCGGG 62.200 72.222 0.00 0.00 0.00 6.13
671 704 3.775654 GTGCGTGAGGGGAGGGAG 61.776 72.222 0.00 0.00 0.00 4.30
672 705 3.992641 TGCGTGAGGGGAGGGAGA 61.993 66.667 0.00 0.00 0.00 3.71
673 706 3.462678 GCGTGAGGGGAGGGAGAC 61.463 72.222 0.00 0.00 0.00 3.36
674 707 2.037367 CGTGAGGGGAGGGAGACA 59.963 66.667 0.00 0.00 0.00 3.41
675 708 2.055042 CGTGAGGGGAGGGAGACAG 61.055 68.421 0.00 0.00 0.00 3.51
676 709 2.039624 TGAGGGGAGGGAGACAGC 59.960 66.667 0.00 0.00 0.00 4.40
677 710 2.766229 GAGGGGAGGGAGACAGCC 60.766 72.222 0.00 0.00 0.00 4.85
678 711 3.615811 AGGGGAGGGAGACAGCCA 61.616 66.667 0.00 0.00 0.00 4.75
679 712 2.610859 GGGGAGGGAGACAGCCAA 60.611 66.667 0.00 0.00 0.00 4.52
680 713 2.003548 GGGGAGGGAGACAGCCAAT 61.004 63.158 0.00 0.00 0.00 3.16
681 714 1.225704 GGGAGGGAGACAGCCAATG 59.774 63.158 0.00 0.00 0.00 2.82
682 715 1.225704 GGAGGGAGACAGCCAATGG 59.774 63.158 0.00 0.00 0.00 3.16
683 716 1.566298 GGAGGGAGACAGCCAATGGT 61.566 60.000 0.00 0.00 0.00 3.55
684 717 0.107459 GAGGGAGACAGCCAATGGTC 60.107 60.000 0.00 0.00 0.00 4.02
685 718 0.842030 AGGGAGACAGCCAATGGTCA 60.842 55.000 0.00 0.00 36.50 4.02
686 719 0.257039 GGGAGACAGCCAATGGTCAT 59.743 55.000 0.00 0.00 36.50 3.06
687 720 1.386533 GGAGACAGCCAATGGTCATG 58.613 55.000 0.00 0.30 36.50 3.07
688 721 1.386533 GAGACAGCCAATGGTCATGG 58.613 55.000 0.00 0.00 41.08 3.66
695 728 2.453983 CCAATGGTCATGGCGTTTTT 57.546 45.000 0.00 0.00 0.00 1.94
696 729 2.067766 CCAATGGTCATGGCGTTTTTG 58.932 47.619 0.00 0.00 0.00 2.44
697 730 1.460359 CAATGGTCATGGCGTTTTTGC 59.540 47.619 0.00 0.00 0.00 3.68
698 731 0.678395 ATGGTCATGGCGTTTTTGCA 59.322 45.000 0.00 0.00 36.28 4.08
699 732 0.461548 TGGTCATGGCGTTTTTGCAA 59.538 45.000 0.00 0.00 36.28 4.08
700 733 1.134699 TGGTCATGGCGTTTTTGCAAA 60.135 42.857 8.05 8.05 36.28 3.68
701 734 1.936547 GGTCATGGCGTTTTTGCAAAA 59.063 42.857 20.46 20.46 36.28 2.44
702 735 2.352960 GGTCATGGCGTTTTTGCAAAAA 59.647 40.909 28.85 28.85 35.67 1.94
710 743 1.739067 TTTTTGCAAAAACACCCCCG 58.261 45.000 28.85 0.00 33.29 5.73
711 744 0.107654 TTTTGCAAAAACACCCCCGG 60.108 50.000 21.94 0.00 0.00 5.73
712 745 0.976073 TTTGCAAAAACACCCCCGGA 60.976 50.000 10.02 0.00 0.00 5.14
713 746 0.760945 TTGCAAAAACACCCCCGGAT 60.761 50.000 0.73 0.00 0.00 4.18
714 747 1.182385 TGCAAAAACACCCCCGGATC 61.182 55.000 0.73 0.00 0.00 3.36
715 748 1.880186 CAAAAACACCCCCGGATCG 59.120 57.895 0.73 0.00 0.00 3.69
716 749 0.606944 CAAAAACACCCCCGGATCGA 60.607 55.000 0.73 0.00 0.00 3.59
717 750 0.607217 AAAAACACCCCCGGATCGAC 60.607 55.000 0.73 0.00 0.00 4.20
718 751 1.486145 AAAACACCCCCGGATCGACT 61.486 55.000 0.73 0.00 0.00 4.18
719 752 0.615544 AAACACCCCCGGATCGACTA 60.616 55.000 0.73 0.00 0.00 2.59
720 753 1.041447 AACACCCCCGGATCGACTAG 61.041 60.000 0.73 0.00 0.00 2.57
721 754 1.455217 CACCCCCGGATCGACTAGT 60.455 63.158 0.73 0.00 0.00 2.57
722 755 0.179009 CACCCCCGGATCGACTAGTA 60.179 60.000 0.73 0.00 0.00 1.82
723 756 0.776176 ACCCCCGGATCGACTAGTAT 59.224 55.000 0.73 0.00 0.00 2.12
724 757 1.146566 ACCCCCGGATCGACTAGTATT 59.853 52.381 0.73 0.00 0.00 1.89
725 758 1.817447 CCCCCGGATCGACTAGTATTC 59.183 57.143 0.73 0.00 0.00 1.75
726 759 2.511659 CCCCGGATCGACTAGTATTCA 58.488 52.381 0.73 0.00 0.00 2.57
727 760 2.228343 CCCCGGATCGACTAGTATTCAC 59.772 54.545 0.73 0.00 0.00 3.18
728 761 2.228343 CCCGGATCGACTAGTATTCACC 59.772 54.545 0.73 0.00 0.00 4.02
729 762 2.228343 CCGGATCGACTAGTATTCACCC 59.772 54.545 0.00 0.00 0.00 4.61
730 763 3.147629 CGGATCGACTAGTATTCACCCT 58.852 50.000 0.00 0.00 0.00 4.34
731 764 4.321718 CGGATCGACTAGTATTCACCCTA 58.678 47.826 0.00 0.00 0.00 3.53
732 765 4.392445 CGGATCGACTAGTATTCACCCTAG 59.608 50.000 0.00 0.00 37.32 3.02
733 766 4.701171 GGATCGACTAGTATTCACCCTAGG 59.299 50.000 0.06 0.06 35.93 3.02
734 767 5.514484 GGATCGACTAGTATTCACCCTAGGA 60.514 48.000 11.48 0.00 35.93 2.94
735 768 5.579753 TCGACTAGTATTCACCCTAGGAT 57.420 43.478 11.48 0.00 35.93 3.24
736 769 5.558818 TCGACTAGTATTCACCCTAGGATC 58.441 45.833 11.48 0.00 35.93 3.36
737 770 4.392445 CGACTAGTATTCACCCTAGGATCG 59.608 50.000 11.48 0.00 35.93 3.69
738 771 5.558818 GACTAGTATTCACCCTAGGATCGA 58.441 45.833 11.48 0.00 35.93 3.59
739 772 5.315348 ACTAGTATTCACCCTAGGATCGAC 58.685 45.833 11.48 0.34 35.93 4.20
740 773 3.498334 AGTATTCACCCTAGGATCGACC 58.502 50.000 11.48 0.00 39.35 4.79
741 774 2.471815 ATTCACCCTAGGATCGACCA 57.528 50.000 11.48 0.00 42.04 4.02
742 775 1.776662 TTCACCCTAGGATCGACCAG 58.223 55.000 11.48 0.00 42.04 4.00
743 776 0.106167 TCACCCTAGGATCGACCAGG 60.106 60.000 11.48 9.73 42.04 4.45
744 777 0.397254 CACCCTAGGATCGACCAGGT 60.397 60.000 11.48 0.00 42.04 4.00
745 778 0.397254 ACCCTAGGATCGACCAGGTG 60.397 60.000 11.48 0.00 42.04 4.00
746 779 1.115930 CCCTAGGATCGACCAGGTGG 61.116 65.000 11.48 0.00 42.04 4.61
747 780 1.742768 CTAGGATCGACCAGGTGGC 59.257 63.158 0.00 0.00 42.04 5.01
748 781 2.076622 CTAGGATCGACCAGGTGGCG 62.077 65.000 0.00 0.00 42.04 5.69
749 782 4.530857 GGATCGACCAGGTGGCGG 62.531 72.222 0.00 0.00 39.32 6.13
750 783 3.771160 GATCGACCAGGTGGCGGT 61.771 66.667 0.00 0.00 40.30 5.68
755 788 2.113139 ACCAGGTGGCGGTCAAAG 59.887 61.111 0.00 0.00 39.32 2.77
756 789 2.113139 CCAGGTGGCGGTCAAAGT 59.887 61.111 0.00 0.00 0.00 2.66
757 790 2.260869 CCAGGTGGCGGTCAAAGTG 61.261 63.158 0.00 0.00 0.00 3.16
758 791 1.227823 CAGGTGGCGGTCAAAGTGA 60.228 57.895 0.00 0.00 0.00 3.41
759 792 1.071471 AGGTGGCGGTCAAAGTGAG 59.929 57.895 0.00 0.00 0.00 3.51
760 793 2.617274 GGTGGCGGTCAAAGTGAGC 61.617 63.158 0.00 0.00 41.16 4.26
761 794 1.598130 GTGGCGGTCAAAGTGAGCT 60.598 57.895 5.95 0.00 42.30 4.09
762 795 1.597854 TGGCGGTCAAAGTGAGCTG 60.598 57.895 0.00 1.58 42.30 4.24
763 796 2.328099 GGCGGTCAAAGTGAGCTGG 61.328 63.158 0.00 0.00 42.30 4.85
764 797 2.970974 GCGGTCAAAGTGAGCTGGC 61.971 63.158 0.00 0.00 42.30 4.85
765 798 2.671177 CGGTCAAAGTGAGCTGGCG 61.671 63.158 0.00 0.00 42.30 5.69
766 799 2.328099 GGTCAAAGTGAGCTGGCGG 61.328 63.158 0.00 0.00 41.34 6.13
767 800 2.669569 TCAAAGTGAGCTGGCGGC 60.670 61.111 11.19 11.19 42.19 6.53
768 801 3.741476 CAAAGTGAGCTGGCGGCC 61.741 66.667 16.15 13.32 43.05 6.13
784 817 2.030562 CCGTTGACTCGGCCAAGT 59.969 61.111 0.00 0.00 43.96 3.16
785 818 2.027625 CCGTTGACTCGGCCAAGTC 61.028 63.158 17.42 17.42 43.96 3.01
789 822 2.343758 GACTCGGCCAAGTCAGCA 59.656 61.111 19.30 0.00 44.20 4.41
790 823 1.301716 GACTCGGCCAAGTCAGCAA 60.302 57.895 19.30 0.00 44.20 3.91
791 824 0.884704 GACTCGGCCAAGTCAGCAAA 60.885 55.000 19.30 0.00 44.20 3.68
792 825 0.250901 ACTCGGCCAAGTCAGCAAAT 60.251 50.000 2.24 0.00 0.00 2.32
793 826 1.003118 ACTCGGCCAAGTCAGCAAATA 59.997 47.619 2.24 0.00 0.00 1.40
794 827 1.398390 CTCGGCCAAGTCAGCAAATAC 59.602 52.381 2.24 0.00 0.00 1.89
795 828 0.096976 CGGCCAAGTCAGCAAATACG 59.903 55.000 2.24 0.00 0.00 3.06
796 829 1.165270 GGCCAAGTCAGCAAATACGT 58.835 50.000 0.00 0.00 0.00 3.57
797 830 2.352388 GGCCAAGTCAGCAAATACGTA 58.648 47.619 0.00 0.00 0.00 3.57
798 831 2.095372 GGCCAAGTCAGCAAATACGTAC 59.905 50.000 0.00 0.00 0.00 3.67
799 832 2.739913 GCCAAGTCAGCAAATACGTACA 59.260 45.455 0.00 0.00 0.00 2.90
800 833 3.424433 GCCAAGTCAGCAAATACGTACAC 60.424 47.826 0.00 0.00 0.00 2.90
801 834 3.181534 CCAAGTCAGCAAATACGTACACG 60.182 47.826 0.00 0.00 46.33 4.49
802 835 3.564235 AGTCAGCAAATACGTACACGA 57.436 42.857 9.04 0.00 43.02 4.35
803 836 3.904571 AGTCAGCAAATACGTACACGAA 58.095 40.909 9.04 0.00 43.02 3.85
804 837 4.300803 AGTCAGCAAATACGTACACGAAA 58.699 39.130 9.04 0.00 43.02 3.46
805 838 4.927425 AGTCAGCAAATACGTACACGAAAT 59.073 37.500 9.04 0.00 43.02 2.17
806 839 5.061808 AGTCAGCAAATACGTACACGAAATC 59.938 40.000 9.04 0.00 43.02 2.17
807 840 4.030865 TCAGCAAATACGTACACGAAATCG 59.969 41.667 9.04 0.48 43.02 3.34
821 854 4.671880 CGAAATCGTACAAATGGACCAA 57.328 40.909 0.00 0.00 34.11 3.67
822 855 5.037015 CGAAATCGTACAAATGGACCAAA 57.963 39.130 0.00 0.00 34.11 3.28
823 856 5.086058 CGAAATCGTACAAATGGACCAAAG 58.914 41.667 0.00 0.00 34.11 2.77
824 857 5.334569 CGAAATCGTACAAATGGACCAAAGT 60.335 40.000 0.00 0.00 34.11 2.66
825 858 5.371115 AATCGTACAAATGGACCAAAGTG 57.629 39.130 0.00 0.00 0.00 3.16
826 859 4.074627 TCGTACAAATGGACCAAAGTGA 57.925 40.909 0.00 0.00 0.00 3.41
827 860 4.452825 TCGTACAAATGGACCAAAGTGAA 58.547 39.130 0.00 0.00 0.00 3.18
828 861 4.273969 TCGTACAAATGGACCAAAGTGAAC 59.726 41.667 0.00 0.00 0.00 3.18
829 862 4.555906 CGTACAAATGGACCAAAGTGAACC 60.556 45.833 0.00 0.00 0.00 3.62
830 863 2.698274 ACAAATGGACCAAAGTGAACCC 59.302 45.455 0.00 0.00 0.00 4.11
831 864 2.965147 CAAATGGACCAAAGTGAACCCT 59.035 45.455 0.00 0.00 0.00 4.34
832 865 2.292828 ATGGACCAAAGTGAACCCTG 57.707 50.000 0.00 0.00 0.00 4.45
833 866 0.923358 TGGACCAAAGTGAACCCTGT 59.077 50.000 0.00 0.00 0.00 4.00
834 867 2.128535 TGGACCAAAGTGAACCCTGTA 58.871 47.619 0.00 0.00 0.00 2.74
835 868 2.158726 TGGACCAAAGTGAACCCTGTAC 60.159 50.000 0.00 0.00 0.00 2.90
836 869 2.140717 GACCAAAGTGAACCCTGTACG 58.859 52.381 0.00 0.00 0.00 3.67
837 870 0.872388 CCAAAGTGAACCCTGTACGC 59.128 55.000 0.00 0.00 0.00 4.42
838 871 1.588674 CAAAGTGAACCCTGTACGCA 58.411 50.000 0.00 0.00 0.00 5.24
839 872 1.944024 CAAAGTGAACCCTGTACGCAA 59.056 47.619 0.00 0.00 0.00 4.85
852 885 3.165498 CGCAAGTACTTGGACCGC 58.835 61.111 31.42 18.59 40.74 5.68
853 886 2.726691 CGCAAGTACTTGGACCGCG 61.727 63.158 31.42 24.96 40.74 6.46
854 887 2.388232 GCAAGTACTTGGACCGCGG 61.388 63.158 31.42 26.86 40.74 6.46
855 888 1.005394 CAAGTACTTGGACCGCGGT 60.005 57.895 34.89 34.89 36.95 5.68
856 889 0.244450 CAAGTACTTGGACCGCGGTA 59.756 55.000 34.36 15.12 36.95 4.02
857 890 1.134907 CAAGTACTTGGACCGCGGTAT 60.135 52.381 34.36 16.73 36.95 2.73
858 891 1.188863 AGTACTTGGACCGCGGTATT 58.811 50.000 34.36 13.02 0.00 1.89
859 892 1.551883 AGTACTTGGACCGCGGTATTT 59.448 47.619 34.36 16.30 0.00 1.40
860 893 2.027837 AGTACTTGGACCGCGGTATTTT 60.028 45.455 34.36 17.07 0.00 1.82
861 894 2.766345 ACTTGGACCGCGGTATTTTA 57.234 45.000 34.36 13.09 0.00 1.52
862 895 2.624636 ACTTGGACCGCGGTATTTTAG 58.375 47.619 34.36 24.16 0.00 1.85
863 896 2.027837 ACTTGGACCGCGGTATTTTAGT 60.028 45.455 34.36 24.80 0.00 2.24
864 897 2.012937 TGGACCGCGGTATTTTAGTG 57.987 50.000 34.36 0.00 0.00 2.74
865 898 1.292992 GGACCGCGGTATTTTAGTGG 58.707 55.000 34.36 0.00 41.04 4.00
868 901 2.892374 ACCGCGGTATTTTAGTGGTAC 58.108 47.619 33.34 0.00 45.73 3.34
869 902 2.204237 CCGCGGTATTTTAGTGGTACC 58.796 52.381 19.50 4.43 35.59 3.34
870 903 2.418471 CCGCGGTATTTTAGTGGTACCA 60.418 50.000 19.50 11.60 38.18 3.25
871 904 3.260740 CGCGGTATTTTAGTGGTACCAA 58.739 45.455 18.31 0.00 38.18 3.67
872 905 3.683822 CGCGGTATTTTAGTGGTACCAAA 59.316 43.478 18.31 7.79 38.18 3.28
873 906 4.435917 CGCGGTATTTTAGTGGTACCAAAC 60.436 45.833 18.31 5.11 38.18 2.93
874 907 4.696877 GCGGTATTTTAGTGGTACCAAACT 59.303 41.667 18.31 13.30 38.18 2.66
875 908 5.391203 GCGGTATTTTAGTGGTACCAAACTG 60.391 44.000 18.31 11.72 38.18 3.16
876 909 5.702209 CGGTATTTTAGTGGTACCAAACTGT 59.298 40.000 18.31 4.22 38.18 3.55
877 910 6.128472 CGGTATTTTAGTGGTACCAAACTGTC 60.128 42.308 18.31 2.56 38.18 3.51
878 911 6.711645 GGTATTTTAGTGGTACCAAACTGTCA 59.288 38.462 18.31 0.00 38.18 3.58
879 912 6.628919 ATTTTAGTGGTACCAAACTGTCAC 57.371 37.500 18.31 0.88 0.00 3.67
880 913 2.632987 AGTGGTACCAAACTGTCACC 57.367 50.000 18.31 0.05 0.00 4.02
881 914 1.142262 AGTGGTACCAAACTGTCACCC 59.858 52.381 18.31 0.00 0.00 4.61
882 915 1.134037 GTGGTACCAAACTGTCACCCA 60.134 52.381 18.31 0.00 0.00 4.51
884 917 1.235724 GTACCAAACTGTCACCCAGC 58.764 55.000 0.00 0.00 45.68 4.85
885 918 1.136828 TACCAAACTGTCACCCAGCT 58.863 50.000 0.00 0.00 45.68 4.24
886 919 0.179018 ACCAAACTGTCACCCAGCTC 60.179 55.000 0.00 0.00 45.68 4.09
887 920 0.179020 CCAAACTGTCACCCAGCTCA 60.179 55.000 0.00 0.00 45.68 4.26
888 921 1.679139 CAAACTGTCACCCAGCTCAA 58.321 50.000 0.00 0.00 45.68 3.02
889 922 1.605710 CAAACTGTCACCCAGCTCAAG 59.394 52.381 0.00 0.00 45.68 3.02
890 923 0.839946 AACTGTCACCCAGCTCAAGT 59.160 50.000 0.00 0.00 45.68 3.16
891 924 0.839946 ACTGTCACCCAGCTCAAGTT 59.160 50.000 0.00 0.00 45.68 2.66
892 925 1.212935 ACTGTCACCCAGCTCAAGTTT 59.787 47.619 0.00 0.00 45.68 2.66
893 926 2.438021 ACTGTCACCCAGCTCAAGTTTA 59.562 45.455 0.00 0.00 45.68 2.01
894 927 3.070018 CTGTCACCCAGCTCAAGTTTAG 58.930 50.000 0.00 0.00 33.59 1.85
895 928 1.807142 GTCACCCAGCTCAAGTTTAGC 59.193 52.381 0.51 0.51 40.40 3.09
896 929 0.798776 CACCCAGCTCAAGTTTAGCG 59.201 55.000 3.46 0.00 44.87 4.26
897 930 0.685097 ACCCAGCTCAAGTTTAGCGA 59.315 50.000 3.46 0.00 44.87 4.93
898 931 1.079503 CCCAGCTCAAGTTTAGCGAC 58.920 55.000 3.46 0.00 44.87 5.19
899 932 1.608025 CCCAGCTCAAGTTTAGCGACA 60.608 52.381 3.46 0.00 44.87 4.35
900 933 2.350522 CCAGCTCAAGTTTAGCGACAT 58.649 47.619 3.46 0.00 44.87 3.06
901 934 3.521560 CCAGCTCAAGTTTAGCGACATA 58.478 45.455 3.46 0.00 44.87 2.29
902 935 3.307242 CCAGCTCAAGTTTAGCGACATAC 59.693 47.826 3.46 0.00 44.87 2.39
903 936 3.926527 CAGCTCAAGTTTAGCGACATACA 59.073 43.478 3.46 0.00 44.87 2.29
904 937 4.032217 CAGCTCAAGTTTAGCGACATACAG 59.968 45.833 3.46 0.00 44.87 2.74
905 938 3.927142 GCTCAAGTTTAGCGACATACAGT 59.073 43.478 0.00 0.00 0.00 3.55
906 939 4.201628 GCTCAAGTTTAGCGACATACAGTG 60.202 45.833 0.00 0.00 0.00 3.66
907 940 5.128992 TCAAGTTTAGCGACATACAGTGA 57.871 39.130 0.00 0.00 0.00 3.41
908 941 5.534407 TCAAGTTTAGCGACATACAGTGAA 58.466 37.500 0.00 0.00 0.00 3.18
909 942 6.163476 TCAAGTTTAGCGACATACAGTGAAT 58.837 36.000 0.00 0.00 0.00 2.57
910 943 6.649141 TCAAGTTTAGCGACATACAGTGAATT 59.351 34.615 0.00 0.00 0.00 2.17
911 944 7.172532 TCAAGTTTAGCGACATACAGTGAATTT 59.827 33.333 0.00 0.00 0.00 1.82
912 945 7.435068 AGTTTAGCGACATACAGTGAATTTT 57.565 32.000 0.00 0.00 0.00 1.82
913 946 7.871853 AGTTTAGCGACATACAGTGAATTTTT 58.128 30.769 0.00 0.00 0.00 1.94
914 947 8.015658 AGTTTAGCGACATACAGTGAATTTTTC 58.984 33.333 0.00 0.00 0.00 2.29
915 948 7.667043 TTAGCGACATACAGTGAATTTTTCT 57.333 32.000 0.00 0.00 0.00 2.52
916 949 6.170675 AGCGACATACAGTGAATTTTTCTC 57.829 37.500 0.00 0.00 0.00 2.87
917 950 5.934625 AGCGACATACAGTGAATTTTTCTCT 59.065 36.000 0.00 0.00 34.09 3.10
918 951 6.428159 AGCGACATACAGTGAATTTTTCTCTT 59.572 34.615 0.00 0.00 31.64 2.85
919 952 7.041098 AGCGACATACAGTGAATTTTTCTCTTT 60.041 33.333 0.00 0.00 31.64 2.52
920 953 7.269297 GCGACATACAGTGAATTTTTCTCTTTC 59.731 37.037 0.00 0.00 31.64 2.62
921 954 7.746475 CGACATACAGTGAATTTTTCTCTTTCC 59.254 37.037 0.00 0.00 31.64 3.13
922 955 8.697507 ACATACAGTGAATTTTTCTCTTTCCT 57.302 30.769 0.00 0.00 31.64 3.36
923 956 9.793259 ACATACAGTGAATTTTTCTCTTTCCTA 57.207 29.630 0.00 0.00 31.64 2.94
1487 3025 1.379977 ACTCCCGCATCTTCGAGGA 60.380 57.895 0.00 0.00 0.00 3.71
1495 3089 0.727970 CATCTTCGAGGACGACGACT 59.272 55.000 0.00 0.00 46.22 4.18
2142 4317 0.103208 AGATGTTCCATCCGCTCGAC 59.897 55.000 0.74 0.00 0.00 4.20
2425 4600 1.112916 TCACGCTGAAGGTCCTGACA 61.113 55.000 0.00 0.00 0.00 3.58
2434 4609 3.181454 TGAAGGTCCTGACAAAGTTCCTC 60.181 47.826 0.00 0.00 0.00 3.71
2453 4628 5.798132 TCCTCGATATTCAGGATTCAATGG 58.202 41.667 0.37 0.00 33.57 3.16
2455 4630 5.233083 TCGATATTCAGGATTCAATGGCT 57.767 39.130 0.00 0.00 0.00 4.75
2500 4685 7.356540 TCGTTTATGGTAATTGTTGTTGTCTG 58.643 34.615 0.00 0.00 0.00 3.51
2534 4719 4.770010 ACTTACCATTTACATTGTGGGTGG 59.230 41.667 0.00 7.03 37.33 4.61
2615 4863 8.958175 TTTTGATCGTTTATGGTAATTGTGTC 57.042 30.769 0.00 0.00 0.00 3.67
2654 4931 4.770010 ACTTACCATTTACATTGTGGGTGG 59.230 41.667 0.00 7.03 37.33 4.61
2792 5141 4.642885 TGTAGCCTGTTTACCAATTATGCC 59.357 41.667 0.00 0.00 0.00 4.40
2810 5159 4.678509 TGCCGAAAATCATCTGTGTTAC 57.321 40.909 0.00 0.00 0.00 2.50
2987 5446 7.657354 TGCACTGTATTAATAGATTGGCTAGTG 59.343 37.037 10.67 6.76 31.33 2.74
3035 5494 5.006386 ACATCTCTTCAGGAATTTGTGTCC 58.994 41.667 0.00 0.00 35.17 4.02
3068 5908 0.106521 GCAAACAAGGGCATGTTGGT 59.893 50.000 8.42 0.00 42.49 3.67
3146 6008 6.008960 ACGGAGTATAACCTAGGGTTCATAG 58.991 44.000 14.81 0.00 40.20 2.23
3165 6027 9.890352 GTTCATAGATGATTATTTTCTCTTGCC 57.110 33.333 0.00 0.00 36.56 4.52
3185 6049 9.507329 TCTTGCCCAATATTCACTAGATAAATC 57.493 33.333 0.00 0.00 0.00 2.17
3195 6059 6.985653 TCACTAGATAAATCCCTGAAGAGG 57.014 41.667 0.00 0.00 39.42 3.69
3220 6084 4.025360 TGCTCAATTGCTGGATTGGTAAT 58.975 39.130 0.00 0.00 37.56 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 88 4.069232 CAGAGGACCGCCGAGCAA 62.069 66.667 0.00 0.00 39.96 3.91
152 154 5.004345 CGTGCTGAAACTTTGAACGAATTTT 59.996 36.000 0.00 0.00 0.00 1.82
184 203 3.617288 CGATGTGGAGATGGTCACTTTGA 60.617 47.826 0.00 0.00 35.15 2.69
229 250 1.544759 CGGGAGGTTTGTACTGGCTTT 60.545 52.381 0.00 0.00 0.00 3.51
522 555 4.124851 AGAACGTATTTAGCCTGACTGG 57.875 45.455 0.00 0.00 39.35 4.00
523 556 4.201724 GCAAGAACGTATTTAGCCTGACTG 60.202 45.833 0.00 0.00 0.00 3.51
524 557 3.933332 GCAAGAACGTATTTAGCCTGACT 59.067 43.478 0.00 0.00 0.00 3.41
525 558 3.933332 AGCAAGAACGTATTTAGCCTGAC 59.067 43.478 0.00 0.00 0.00 3.51
526 559 4.202245 AGCAAGAACGTATTTAGCCTGA 57.798 40.909 0.00 0.00 0.00 3.86
527 560 4.631813 AGAAGCAAGAACGTATTTAGCCTG 59.368 41.667 0.00 0.00 0.00 4.85
528 561 4.631813 CAGAAGCAAGAACGTATTTAGCCT 59.368 41.667 0.00 0.00 0.00 4.58
529 562 4.728021 GCAGAAGCAAGAACGTATTTAGCC 60.728 45.833 0.00 0.00 41.58 3.93
530 563 4.335272 GCAGAAGCAAGAACGTATTTAGC 58.665 43.478 0.00 0.00 41.58 3.09
531 564 4.091509 ACGCAGAAGCAAGAACGTATTTAG 59.908 41.667 0.00 0.00 42.27 1.85
532 565 3.991773 ACGCAGAAGCAAGAACGTATTTA 59.008 39.130 0.00 0.00 42.27 1.40
533 566 2.806244 ACGCAGAAGCAAGAACGTATTT 59.194 40.909 0.00 0.00 42.27 1.40
534 567 2.157668 CACGCAGAAGCAAGAACGTATT 59.842 45.455 0.00 0.00 42.27 1.89
535 568 1.726791 CACGCAGAAGCAAGAACGTAT 59.273 47.619 0.00 0.00 42.27 3.06
536 569 1.136690 CACGCAGAAGCAAGAACGTA 58.863 50.000 0.00 0.00 42.27 3.57
537 570 1.498865 CCACGCAGAAGCAAGAACGT 61.499 55.000 0.00 0.00 42.27 3.99
538 571 1.205064 CCACGCAGAAGCAAGAACG 59.795 57.895 0.00 0.00 42.27 3.95
539 572 0.040958 CACCACGCAGAAGCAAGAAC 60.041 55.000 0.00 0.00 42.27 3.01
540 573 0.179059 TCACCACGCAGAAGCAAGAA 60.179 50.000 0.00 0.00 42.27 2.52
541 574 0.880278 GTCACCACGCAGAAGCAAGA 60.880 55.000 0.00 0.00 42.27 3.02
542 575 1.159713 TGTCACCACGCAGAAGCAAG 61.160 55.000 0.00 0.00 42.27 4.01
543 576 0.746204 TTGTCACCACGCAGAAGCAA 60.746 50.000 0.00 0.00 42.27 3.91
544 577 0.746204 TTTGTCACCACGCAGAAGCA 60.746 50.000 0.00 0.00 42.27 3.91
545 578 0.317020 GTTTGTCACCACGCAGAAGC 60.317 55.000 0.00 0.00 37.42 3.86
546 579 0.307760 GGTTTGTCACCACGCAGAAG 59.692 55.000 0.00 0.00 46.42 2.85
547 580 2.399856 GGTTTGTCACCACGCAGAA 58.600 52.632 0.00 0.00 46.42 3.02
548 581 4.134623 GGTTTGTCACCACGCAGA 57.865 55.556 0.00 0.00 46.42 4.26
555 588 1.586154 CCATGCCTCGGTTTGTCACC 61.586 60.000 0.00 0.00 43.16 4.02
556 589 1.875963 CCATGCCTCGGTTTGTCAC 59.124 57.895 0.00 0.00 0.00 3.67
557 590 1.971167 GCCATGCCTCGGTTTGTCA 60.971 57.895 0.00 0.00 0.00 3.58
558 591 1.523154 TTGCCATGCCTCGGTTTGTC 61.523 55.000 0.00 0.00 0.00 3.18
559 592 1.530419 TTGCCATGCCTCGGTTTGT 60.530 52.632 0.00 0.00 0.00 2.83
560 593 1.080569 GTTGCCATGCCTCGGTTTG 60.081 57.895 0.00 0.00 0.00 2.93
561 594 1.228552 AGTTGCCATGCCTCGGTTT 60.229 52.632 0.00 0.00 0.00 3.27
562 595 1.675641 GAGTTGCCATGCCTCGGTT 60.676 57.895 0.00 0.00 0.00 4.44
563 596 2.045926 GAGTTGCCATGCCTCGGT 60.046 61.111 0.00 0.00 0.00 4.69
564 597 2.825836 GGAGTTGCCATGCCTCGG 60.826 66.667 0.00 0.00 36.34 4.63
565 598 2.046023 TGGAGTTGCCATGCCTCG 60.046 61.111 0.00 0.00 43.33 4.63
573 606 3.423154 CTCGCCGTTGGAGTTGCC 61.423 66.667 0.00 0.00 37.10 4.52
574 607 4.090057 GCTCGCCGTTGGAGTTGC 62.090 66.667 0.00 0.00 34.00 4.17
575 608 3.777925 CGCTCGCCGTTGGAGTTG 61.778 66.667 0.00 0.00 34.00 3.16
580 613 4.745751 TTACCCGCTCGCCGTTGG 62.746 66.667 0.00 0.00 34.38 3.77
581 614 3.484547 GTTACCCGCTCGCCGTTG 61.485 66.667 0.00 0.00 34.38 4.10
582 615 2.992607 TTTGTTACCCGCTCGCCGTT 62.993 55.000 0.00 0.00 34.38 4.44
583 616 3.518419 TTTGTTACCCGCTCGCCGT 62.518 57.895 0.00 0.00 34.38 5.68
584 617 2.739287 TTTGTTACCCGCTCGCCG 60.739 61.111 0.00 0.00 0.00 6.46
585 618 2.683859 GGTTTGTTACCCGCTCGCC 61.684 63.158 0.00 0.00 41.43 5.54
586 619 2.865308 GGTTTGTTACCCGCTCGC 59.135 61.111 0.00 0.00 41.43 5.03
587 620 2.385091 CCGGTTTGTTACCCGCTCG 61.385 63.158 0.00 0.00 44.70 5.03
588 621 2.683859 GCCGGTTTGTTACCCGCTC 61.684 63.158 1.90 0.00 44.68 5.03
589 622 2.670592 GCCGGTTTGTTACCCGCT 60.671 61.111 1.90 0.00 44.68 5.52
591 624 2.973316 GCTGCCGGTTTGTTACCCG 61.973 63.158 1.90 0.00 44.70 5.28
592 625 2.959372 GCTGCCGGTTTGTTACCC 59.041 61.111 1.90 0.00 44.70 3.69
593 626 1.962306 TCGCTGCCGGTTTGTTACC 60.962 57.895 1.90 0.00 44.03 2.85
594 627 1.205820 GTCGCTGCCGGTTTGTTAC 59.794 57.895 1.90 0.00 34.56 2.50
595 628 2.311701 CGTCGCTGCCGGTTTGTTA 61.312 57.895 1.90 0.00 34.56 2.41
596 629 3.645975 CGTCGCTGCCGGTTTGTT 61.646 61.111 1.90 0.00 34.56 2.83
597 630 4.595538 TCGTCGCTGCCGGTTTGT 62.596 61.111 1.90 0.00 34.56 2.83
598 631 3.777925 CTCGTCGCTGCCGGTTTG 61.778 66.667 1.90 0.00 34.56 2.93
605 638 4.121669 TCTGCTCCTCGTCGCTGC 62.122 66.667 0.00 0.00 0.00 5.25
606 639 2.101965 CTCTGCTCCTCGTCGCTG 59.898 66.667 0.00 0.00 0.00 5.18
607 640 2.045829 TCTCTGCTCCTCGTCGCT 60.046 61.111 0.00 0.00 0.00 4.93
608 641 2.407210 CTCTCTGCTCCTCGTCGC 59.593 66.667 0.00 0.00 0.00 5.19
609 642 2.477176 CCCTCTCTGCTCCTCGTCG 61.477 68.421 0.00 0.00 0.00 5.12
610 643 1.379309 ACCCTCTCTGCTCCTCGTC 60.379 63.158 0.00 0.00 0.00 4.20
611 644 1.680651 CACCCTCTCTGCTCCTCGT 60.681 63.158 0.00 0.00 0.00 4.18
612 645 3.074999 GCACCCTCTCTGCTCCTCG 62.075 68.421 0.00 0.00 0.00 4.63
613 646 2.899505 GCACCCTCTCTGCTCCTC 59.100 66.667 0.00 0.00 0.00 3.71
614 647 3.073735 CGCACCCTCTCTGCTCCT 61.074 66.667 0.00 0.00 32.03 3.69
615 648 4.154347 CCGCACCCTCTCTGCTCC 62.154 72.222 0.00 0.00 32.03 4.70
616 649 3.071206 TCCGCACCCTCTCTGCTC 61.071 66.667 0.00 0.00 32.03 4.26
617 650 3.073735 CTCCGCACCCTCTCTGCT 61.074 66.667 0.00 0.00 32.03 4.24
618 651 4.154347 CCTCCGCACCCTCTCTGC 62.154 72.222 0.00 0.00 0.00 4.26
619 652 2.363018 TCCTCCGCACCCTCTCTG 60.363 66.667 0.00 0.00 0.00 3.35
620 653 2.043450 CTCCTCCGCACCCTCTCT 60.043 66.667 0.00 0.00 0.00 3.10
621 654 2.043852 TCTCCTCCGCACCCTCTC 60.044 66.667 0.00 0.00 0.00 3.20
622 655 2.043450 CTCTCCTCCGCACCCTCT 60.043 66.667 0.00 0.00 0.00 3.69
623 656 3.151022 CCTCTCCTCCGCACCCTC 61.151 72.222 0.00 0.00 0.00 4.30
624 657 3.670629 CTCCTCTCCTCCGCACCCT 62.671 68.421 0.00 0.00 0.00 4.34
625 658 3.151022 CTCCTCTCCTCCGCACCC 61.151 72.222 0.00 0.00 0.00 4.61
626 659 2.043852 TCTCCTCTCCTCCGCACC 60.044 66.667 0.00 0.00 0.00 5.01
627 660 1.662438 CTGTCTCCTCTCCTCCGCAC 61.662 65.000 0.00 0.00 0.00 5.34
628 661 1.379176 CTGTCTCCTCTCCTCCGCA 60.379 63.158 0.00 0.00 0.00 5.69
629 662 2.781158 GCTGTCTCCTCTCCTCCGC 61.781 68.421 0.00 0.00 0.00 5.54
630 663 2.477176 CGCTGTCTCCTCTCCTCCG 61.477 68.421 0.00 0.00 0.00 4.63
631 664 1.077357 TCGCTGTCTCCTCTCCTCC 60.077 63.158 0.00 0.00 0.00 4.30
632 665 1.724582 GCTCGCTGTCTCCTCTCCTC 61.725 65.000 0.00 0.00 0.00 3.71
633 666 1.752694 GCTCGCTGTCTCCTCTCCT 60.753 63.158 0.00 0.00 0.00 3.69
634 667 2.804856 GCTCGCTGTCTCCTCTCC 59.195 66.667 0.00 0.00 0.00 3.71
635 668 2.407210 CGCTCGCTGTCTCCTCTC 59.593 66.667 0.00 0.00 0.00 3.20
636 669 3.137459 CCGCTCGCTGTCTCCTCT 61.137 66.667 0.00 0.00 0.00 3.69
637 670 4.200283 CCCGCTCGCTGTCTCCTC 62.200 72.222 0.00 0.00 0.00 3.71
639 672 4.803426 CACCCGCTCGCTGTCTCC 62.803 72.222 0.00 0.00 0.00 3.71
654 687 3.775654 CTCCCTCCCCTCACGCAC 61.776 72.222 0.00 0.00 0.00 5.34
655 688 3.992641 TCTCCCTCCCCTCACGCA 61.993 66.667 0.00 0.00 0.00 5.24
656 689 3.462678 GTCTCCCTCCCCTCACGC 61.463 72.222 0.00 0.00 0.00 5.34
657 690 2.037367 TGTCTCCCTCCCCTCACG 59.963 66.667 0.00 0.00 0.00 4.35
658 691 2.363172 GCTGTCTCCCTCCCCTCAC 61.363 68.421 0.00 0.00 0.00 3.51
659 692 2.039624 GCTGTCTCCCTCCCCTCA 59.960 66.667 0.00 0.00 0.00 3.86
660 693 2.766229 GGCTGTCTCCCTCCCCTC 60.766 72.222 0.00 0.00 0.00 4.30
661 694 2.498820 ATTGGCTGTCTCCCTCCCCT 62.499 60.000 0.00 0.00 0.00 4.79
662 695 2.003548 ATTGGCTGTCTCCCTCCCC 61.004 63.158 0.00 0.00 0.00 4.81
663 696 1.225704 CATTGGCTGTCTCCCTCCC 59.774 63.158 0.00 0.00 0.00 4.30
664 697 1.225704 CCATTGGCTGTCTCCCTCC 59.774 63.158 0.00 0.00 0.00 4.30
665 698 0.107459 GACCATTGGCTGTCTCCCTC 60.107 60.000 1.54 0.00 0.00 4.30
666 699 0.842030 TGACCATTGGCTGTCTCCCT 60.842 55.000 1.54 0.00 32.67 4.20
667 700 0.257039 ATGACCATTGGCTGTCTCCC 59.743 55.000 1.54 0.00 32.67 4.30
668 701 1.386533 CATGACCATTGGCTGTCTCC 58.613 55.000 1.54 0.00 32.67 3.71
669 702 1.386533 CCATGACCATTGGCTGTCTC 58.613 55.000 1.54 0.00 32.67 3.36
670 703 0.682209 GCCATGACCATTGGCTGTCT 60.682 55.000 1.54 0.00 44.72 3.41
671 704 1.811860 GCCATGACCATTGGCTGTC 59.188 57.895 1.54 0.00 44.72 3.51
672 705 2.048023 CGCCATGACCATTGGCTGT 61.048 57.895 12.42 0.00 45.86 4.40
673 706 1.597797 AACGCCATGACCATTGGCTG 61.598 55.000 12.42 8.57 45.86 4.85
674 707 0.899717 AAACGCCATGACCATTGGCT 60.900 50.000 12.42 0.00 45.86 4.75
675 708 0.037419 AAAACGCCATGACCATTGGC 60.037 50.000 1.54 4.61 44.69 4.52
676 709 2.067766 CAAAAACGCCATGACCATTGG 58.932 47.619 0.00 0.00 0.00 3.16
677 710 1.460359 GCAAAAACGCCATGACCATTG 59.540 47.619 0.00 0.00 0.00 2.82
678 711 1.069823 TGCAAAAACGCCATGACCATT 59.930 42.857 0.00 0.00 0.00 3.16
679 712 0.678395 TGCAAAAACGCCATGACCAT 59.322 45.000 0.00 0.00 0.00 3.55
680 713 0.461548 TTGCAAAAACGCCATGACCA 59.538 45.000 0.00 0.00 0.00 4.02
681 714 1.576356 TTTGCAAAAACGCCATGACC 58.424 45.000 10.02 0.00 0.00 4.02
682 715 3.350043 GTTTTTGCAAAAACGCCATGAC 58.650 40.909 37.89 22.20 45.46 3.06
683 716 3.665173 GTTTTTGCAAAAACGCCATGA 57.335 38.095 37.89 16.15 45.46 3.07
691 724 1.679032 CCGGGGGTGTTTTTGCAAAAA 60.679 47.619 28.85 28.85 35.67 1.94
692 725 0.107654 CCGGGGGTGTTTTTGCAAAA 60.108 50.000 20.46 20.46 0.00 2.44
693 726 0.976073 TCCGGGGGTGTTTTTGCAAA 60.976 50.000 8.05 8.05 0.00 3.68
694 727 0.760945 ATCCGGGGGTGTTTTTGCAA 60.761 50.000 0.00 0.00 0.00 4.08
695 728 1.152440 ATCCGGGGGTGTTTTTGCA 60.152 52.632 0.00 0.00 0.00 4.08
696 729 1.589630 GATCCGGGGGTGTTTTTGC 59.410 57.895 0.00 0.00 0.00 3.68
697 730 0.606944 TCGATCCGGGGGTGTTTTTG 60.607 55.000 0.00 0.00 0.00 2.44
698 731 0.607217 GTCGATCCGGGGGTGTTTTT 60.607 55.000 0.00 0.00 0.00 1.94
699 732 1.002990 GTCGATCCGGGGGTGTTTT 60.003 57.895 0.00 0.00 0.00 2.43
700 733 0.615544 TAGTCGATCCGGGGGTGTTT 60.616 55.000 0.00 0.00 0.00 2.83
701 734 1.000739 TAGTCGATCCGGGGGTGTT 59.999 57.895 0.00 0.00 0.00 3.32
702 735 1.455217 CTAGTCGATCCGGGGGTGT 60.455 63.158 0.00 0.00 0.00 4.16
703 736 0.179009 TACTAGTCGATCCGGGGGTG 60.179 60.000 0.00 0.00 0.00 4.61
704 737 0.776176 ATACTAGTCGATCCGGGGGT 59.224 55.000 0.00 0.00 0.00 4.95
705 738 1.817447 GAATACTAGTCGATCCGGGGG 59.183 57.143 0.00 0.00 0.00 5.40
706 739 2.228343 GTGAATACTAGTCGATCCGGGG 59.772 54.545 0.00 0.00 0.00 5.73
707 740 2.228343 GGTGAATACTAGTCGATCCGGG 59.772 54.545 0.00 0.00 0.00 5.73
708 741 2.228343 GGGTGAATACTAGTCGATCCGG 59.772 54.545 0.00 0.00 0.00 5.14
709 742 3.147629 AGGGTGAATACTAGTCGATCCG 58.852 50.000 0.00 0.00 0.00 4.18
710 743 4.701171 CCTAGGGTGAATACTAGTCGATCC 59.299 50.000 0.00 0.00 35.93 3.36
711 744 5.558818 TCCTAGGGTGAATACTAGTCGATC 58.441 45.833 9.46 0.00 35.93 3.69
712 745 5.579753 TCCTAGGGTGAATACTAGTCGAT 57.420 43.478 9.46 0.00 35.93 3.59
713 746 5.558818 GATCCTAGGGTGAATACTAGTCGA 58.441 45.833 9.46 0.00 35.93 4.20
714 747 4.392445 CGATCCTAGGGTGAATACTAGTCG 59.608 50.000 9.46 0.00 35.93 4.18
715 748 5.412286 GTCGATCCTAGGGTGAATACTAGTC 59.588 48.000 9.46 0.00 35.93 2.59
716 749 5.315348 GTCGATCCTAGGGTGAATACTAGT 58.685 45.833 9.46 0.00 35.93 2.57
717 750 4.701171 GGTCGATCCTAGGGTGAATACTAG 59.299 50.000 9.46 0.00 37.12 2.57
718 751 4.105217 TGGTCGATCCTAGGGTGAATACTA 59.895 45.833 9.46 0.00 37.07 1.82
719 752 3.117246 TGGTCGATCCTAGGGTGAATACT 60.117 47.826 9.46 0.00 37.07 2.12
720 753 3.228453 TGGTCGATCCTAGGGTGAATAC 58.772 50.000 9.46 0.38 37.07 1.89
721 754 3.497332 CTGGTCGATCCTAGGGTGAATA 58.503 50.000 9.46 0.00 37.07 1.75
722 755 2.320781 CTGGTCGATCCTAGGGTGAAT 58.679 52.381 9.46 0.00 37.07 2.57
723 756 1.688311 CCTGGTCGATCCTAGGGTGAA 60.688 57.143 9.46 0.00 37.07 3.18
724 757 0.106167 CCTGGTCGATCCTAGGGTGA 60.106 60.000 9.46 1.45 37.07 4.02
725 758 0.397254 ACCTGGTCGATCCTAGGGTG 60.397 60.000 9.46 0.00 38.18 4.61
726 759 0.397254 CACCTGGTCGATCCTAGGGT 60.397 60.000 9.46 0.00 38.18 4.34
727 760 1.115930 CCACCTGGTCGATCCTAGGG 61.116 65.000 9.46 8.98 38.18 3.53
728 761 1.749334 GCCACCTGGTCGATCCTAGG 61.749 65.000 0.82 0.82 39.08 3.02
729 762 1.742768 GCCACCTGGTCGATCCTAG 59.257 63.158 0.00 0.00 37.57 3.02
730 763 2.125326 CGCCACCTGGTCGATCCTA 61.125 63.158 0.00 0.00 37.05 2.94
731 764 3.461773 CGCCACCTGGTCGATCCT 61.462 66.667 0.00 0.00 37.05 3.24
732 765 4.530857 CCGCCACCTGGTCGATCC 62.531 72.222 9.27 0.00 37.05 3.36
733 766 3.718210 GACCGCCACCTGGTCGATC 62.718 68.421 9.27 0.00 45.82 3.69
734 767 3.771160 GACCGCCACCTGGTCGAT 61.771 66.667 9.27 0.00 45.82 3.59
738 771 2.113139 CTTTGACCGCCACCTGGT 59.887 61.111 0.00 0.00 44.10 4.00
739 772 2.113139 ACTTTGACCGCCACCTGG 59.887 61.111 0.00 0.00 38.53 4.45
740 773 1.227823 TCACTTTGACCGCCACCTG 60.228 57.895 0.00 0.00 0.00 4.00
741 774 1.071471 CTCACTTTGACCGCCACCT 59.929 57.895 0.00 0.00 0.00 4.00
742 775 2.617274 GCTCACTTTGACCGCCACC 61.617 63.158 0.00 0.00 0.00 4.61
743 776 1.598130 AGCTCACTTTGACCGCCAC 60.598 57.895 0.00 0.00 0.00 5.01
744 777 1.597854 CAGCTCACTTTGACCGCCA 60.598 57.895 0.00 0.00 0.00 5.69
745 778 2.328099 CCAGCTCACTTTGACCGCC 61.328 63.158 0.00 0.00 0.00 6.13
746 779 2.970974 GCCAGCTCACTTTGACCGC 61.971 63.158 0.00 0.00 0.00 5.68
747 780 2.671177 CGCCAGCTCACTTTGACCG 61.671 63.158 0.00 0.00 0.00 4.79
748 781 2.328099 CCGCCAGCTCACTTTGACC 61.328 63.158 0.00 0.00 0.00 4.02
749 782 2.970974 GCCGCCAGCTCACTTTGAC 61.971 63.158 0.00 0.00 38.99 3.18
750 783 2.669569 GCCGCCAGCTCACTTTGA 60.670 61.111 0.00 0.00 38.99 2.69
751 784 3.741476 GGCCGCCAGCTCACTTTG 61.741 66.667 3.91 0.00 43.05 2.77
768 801 3.550656 GACTTGGCCGAGTCAACG 58.449 61.111 38.16 10.47 44.30 4.10
772 805 0.884704 TTTGCTGACTTGGCCGAGTC 60.885 55.000 37.12 37.12 44.97 3.36
773 806 0.250901 ATTTGCTGACTTGGCCGAGT 60.251 50.000 26.51 26.51 0.00 4.18
774 807 1.398390 GTATTTGCTGACTTGGCCGAG 59.602 52.381 19.26 19.26 0.00 4.63
775 808 1.448985 GTATTTGCTGACTTGGCCGA 58.551 50.000 0.00 0.00 0.00 5.54
776 809 0.096976 CGTATTTGCTGACTTGGCCG 59.903 55.000 0.00 0.00 0.00 6.13
777 810 1.165270 ACGTATTTGCTGACTTGGCC 58.835 50.000 0.00 0.00 0.00 5.36
778 811 2.739913 TGTACGTATTTGCTGACTTGGC 59.260 45.455 0.00 0.00 0.00 4.52
779 812 3.181534 CGTGTACGTATTTGCTGACTTGG 60.182 47.826 0.00 0.00 34.11 3.61
780 813 3.671459 TCGTGTACGTATTTGCTGACTTG 59.329 43.478 0.00 0.00 40.80 3.16
781 814 3.904571 TCGTGTACGTATTTGCTGACTT 58.095 40.909 0.00 0.00 40.80 3.01
782 815 3.564235 TCGTGTACGTATTTGCTGACT 57.436 42.857 0.00 0.00 40.80 3.41
783 816 4.634349 TTTCGTGTACGTATTTGCTGAC 57.366 40.909 0.00 0.00 40.80 3.51
784 817 4.030865 CGATTTCGTGTACGTATTTGCTGA 59.969 41.667 0.00 0.00 40.80 4.26
785 818 4.252902 CGATTTCGTGTACGTATTTGCTG 58.747 43.478 0.00 0.00 40.80 4.41
786 819 4.494597 CGATTTCGTGTACGTATTTGCT 57.505 40.909 0.00 0.00 40.80 3.91
800 833 4.671880 TTGGTCCATTTGTACGATTTCG 57.328 40.909 0.00 0.00 46.33 3.46
801 834 5.856455 CACTTTGGTCCATTTGTACGATTTC 59.144 40.000 0.00 0.00 0.00 2.17
802 835 5.533154 TCACTTTGGTCCATTTGTACGATTT 59.467 36.000 0.00 0.00 0.00 2.17
803 836 5.067273 TCACTTTGGTCCATTTGTACGATT 58.933 37.500 0.00 0.00 0.00 3.34
804 837 4.647611 TCACTTTGGTCCATTTGTACGAT 58.352 39.130 0.00 0.00 0.00 3.73
805 838 4.074627 TCACTTTGGTCCATTTGTACGA 57.925 40.909 0.00 0.00 0.00 3.43
806 839 4.533222 GTTCACTTTGGTCCATTTGTACG 58.467 43.478 0.00 0.00 0.00 3.67
807 840 4.261867 GGGTTCACTTTGGTCCATTTGTAC 60.262 45.833 0.00 0.00 0.00 2.90
808 841 3.892588 GGGTTCACTTTGGTCCATTTGTA 59.107 43.478 0.00 0.00 0.00 2.41
809 842 2.698274 GGGTTCACTTTGGTCCATTTGT 59.302 45.455 0.00 0.00 0.00 2.83
810 843 2.965147 AGGGTTCACTTTGGTCCATTTG 59.035 45.455 0.00 0.00 0.00 2.32
811 844 2.965147 CAGGGTTCACTTTGGTCCATTT 59.035 45.455 0.00 0.00 0.00 2.32
812 845 2.091333 ACAGGGTTCACTTTGGTCCATT 60.091 45.455 0.00 0.00 0.00 3.16
813 846 1.499007 ACAGGGTTCACTTTGGTCCAT 59.501 47.619 0.00 0.00 0.00 3.41
814 847 0.923358 ACAGGGTTCACTTTGGTCCA 59.077 50.000 0.00 0.00 0.00 4.02
815 848 2.501261 GTACAGGGTTCACTTTGGTCC 58.499 52.381 0.00 0.00 0.00 4.46
816 849 2.140717 CGTACAGGGTTCACTTTGGTC 58.859 52.381 0.00 0.00 0.00 4.02
817 850 1.812708 GCGTACAGGGTTCACTTTGGT 60.813 52.381 0.00 0.00 0.00 3.67
818 851 0.872388 GCGTACAGGGTTCACTTTGG 59.128 55.000 0.00 0.00 0.00 3.28
819 852 1.588674 TGCGTACAGGGTTCACTTTG 58.411 50.000 0.00 0.00 0.00 2.77
820 853 2.218603 CTTGCGTACAGGGTTCACTTT 58.781 47.619 0.00 0.00 0.00 2.66
821 854 1.140252 ACTTGCGTACAGGGTTCACTT 59.860 47.619 0.00 0.00 0.00 3.16
822 855 0.756903 ACTTGCGTACAGGGTTCACT 59.243 50.000 0.00 0.00 0.00 3.41
823 856 2.064014 GTACTTGCGTACAGGGTTCAC 58.936 52.381 0.00 0.00 44.29 3.18
824 857 1.965643 AGTACTTGCGTACAGGGTTCA 59.034 47.619 4.96 0.00 46.68 3.18
825 858 2.735134 CAAGTACTTGCGTACAGGGTTC 59.265 50.000 22.03 0.00 46.68 3.62
826 859 2.549349 CCAAGTACTTGCGTACAGGGTT 60.549 50.000 27.05 0.00 46.68 4.11
827 860 1.001633 CCAAGTACTTGCGTACAGGGT 59.998 52.381 27.05 0.00 46.68 4.34
828 861 1.274167 TCCAAGTACTTGCGTACAGGG 59.726 52.381 27.05 13.05 46.68 4.45
829 862 2.334838 GTCCAAGTACTTGCGTACAGG 58.665 52.381 27.05 13.73 46.68 4.00
830 863 2.334838 GGTCCAAGTACTTGCGTACAG 58.665 52.381 27.05 14.09 46.68 2.74
831 864 1.336148 CGGTCCAAGTACTTGCGTACA 60.336 52.381 27.05 7.53 46.68 2.90
832 865 1.343506 CGGTCCAAGTACTTGCGTAC 58.656 55.000 27.05 22.04 45.04 3.67
833 866 0.388907 GCGGTCCAAGTACTTGCGTA 60.389 55.000 27.05 13.42 39.16 4.42
834 867 1.666872 GCGGTCCAAGTACTTGCGT 60.667 57.895 27.05 0.00 39.16 5.24
835 868 2.726691 CGCGGTCCAAGTACTTGCG 61.727 63.158 27.05 24.30 39.16 4.85
836 869 2.388232 CCGCGGTCCAAGTACTTGC 61.388 63.158 27.05 15.86 39.16 4.01
837 870 0.244450 TACCGCGGTCCAAGTACTTG 59.756 55.000 38.01 25.79 40.13 3.16
838 871 1.188863 ATACCGCGGTCCAAGTACTT 58.811 50.000 38.01 8.70 0.00 2.24
839 872 1.188863 AATACCGCGGTCCAAGTACT 58.811 50.000 38.01 9.60 0.00 2.73
840 873 2.014335 AAATACCGCGGTCCAAGTAC 57.986 50.000 38.01 0.00 0.00 2.73
841 874 2.766345 AAAATACCGCGGTCCAAGTA 57.234 45.000 38.01 17.72 0.00 2.24
842 875 2.027837 ACTAAAATACCGCGGTCCAAGT 60.028 45.455 38.01 26.54 0.00 3.16
843 876 2.350498 CACTAAAATACCGCGGTCCAAG 59.650 50.000 38.01 25.89 0.00 3.61
844 877 2.348660 CACTAAAATACCGCGGTCCAA 58.651 47.619 38.01 19.54 0.00 3.53
845 878 1.405797 CCACTAAAATACCGCGGTCCA 60.406 52.381 38.01 20.45 0.00 4.02
846 879 1.292992 CCACTAAAATACCGCGGTCC 58.707 55.000 38.01 0.00 0.00 4.46
847 880 2.014335 ACCACTAAAATACCGCGGTC 57.986 50.000 38.01 0.00 0.00 4.79
848 881 2.418609 GGTACCACTAAAATACCGCGGT 60.419 50.000 36.01 36.01 0.00 5.68
849 882 2.204237 GGTACCACTAAAATACCGCGG 58.796 52.381 26.86 26.86 0.00 6.46
850 883 2.891112 TGGTACCACTAAAATACCGCG 58.109 47.619 11.60 0.00 41.18 6.46
851 884 4.696877 AGTTTGGTACCACTAAAATACCGC 59.303 41.667 16.04 0.00 41.18 5.68
852 885 5.702209 ACAGTTTGGTACCACTAAAATACCG 59.298 40.000 16.04 0.00 41.18 4.02
853 886 6.711645 TGACAGTTTGGTACCACTAAAATACC 59.288 38.462 16.04 2.12 39.12 2.73
854 887 7.308169 GGTGACAGTTTGGTACCACTAAAATAC 60.308 40.741 16.04 9.49 30.39 1.89
855 888 6.711645 GGTGACAGTTTGGTACCACTAAAATA 59.288 38.462 16.04 0.00 30.39 1.40
856 889 5.533528 GGTGACAGTTTGGTACCACTAAAAT 59.466 40.000 16.04 2.59 30.39 1.82
857 890 4.883006 GGTGACAGTTTGGTACCACTAAAA 59.117 41.667 16.04 2.90 30.39 1.52
858 891 4.453751 GGTGACAGTTTGGTACCACTAAA 58.546 43.478 16.04 3.33 0.00 1.85
859 892 3.181452 GGGTGACAGTTTGGTACCACTAA 60.181 47.826 16.04 4.19 33.10 2.24
860 893 2.369532 GGGTGACAGTTTGGTACCACTA 59.630 50.000 16.04 2.46 33.10 2.74
861 894 1.142262 GGGTGACAGTTTGGTACCACT 59.858 52.381 16.04 6.66 33.10 4.00
862 895 1.134037 TGGGTGACAGTTTGGTACCAC 60.134 52.381 16.04 3.90 33.10 4.16
863 896 1.142060 CTGGGTGACAGTTTGGTACCA 59.858 52.381 11.60 11.60 42.42 3.25
864 897 1.892209 CTGGGTGACAGTTTGGTACC 58.108 55.000 4.43 4.43 42.42 3.34
874 907 2.810400 GCTAAACTTGAGCTGGGTGACA 60.810 50.000 0.00 0.00 36.96 3.58
875 908 1.807142 GCTAAACTTGAGCTGGGTGAC 59.193 52.381 0.00 0.00 36.96 3.67
876 909 1.608025 CGCTAAACTTGAGCTGGGTGA 60.608 52.381 0.00 0.00 37.81 4.02
877 910 0.798776 CGCTAAACTTGAGCTGGGTG 59.201 55.000 0.00 0.00 37.81 4.61
878 911 0.685097 TCGCTAAACTTGAGCTGGGT 59.315 50.000 0.00 0.00 37.81 4.51
879 912 1.079503 GTCGCTAAACTTGAGCTGGG 58.920 55.000 0.00 0.00 37.81 4.45
880 913 1.795768 TGTCGCTAAACTTGAGCTGG 58.204 50.000 0.00 0.00 37.81 4.85
881 914 3.926527 TGTATGTCGCTAAACTTGAGCTG 59.073 43.478 0.00 0.00 37.81 4.24
882 915 4.177026 CTGTATGTCGCTAAACTTGAGCT 58.823 43.478 0.00 0.00 37.81 4.09
883 916 3.927142 ACTGTATGTCGCTAAACTTGAGC 59.073 43.478 0.00 0.00 36.54 4.26
884 917 5.161358 TCACTGTATGTCGCTAAACTTGAG 58.839 41.667 0.00 0.00 0.00 3.02
885 918 5.128992 TCACTGTATGTCGCTAAACTTGA 57.871 39.130 0.00 0.00 0.00 3.02
886 919 5.839262 TTCACTGTATGTCGCTAAACTTG 57.161 39.130 0.00 0.00 0.00 3.16
887 920 7.435068 AAATTCACTGTATGTCGCTAAACTT 57.565 32.000 0.00 0.00 0.00 2.66
888 921 7.435068 AAAATTCACTGTATGTCGCTAAACT 57.565 32.000 0.00 0.00 0.00 2.66
889 922 8.015658 AGAAAAATTCACTGTATGTCGCTAAAC 58.984 33.333 0.00 0.00 0.00 2.01
890 923 8.094798 AGAAAAATTCACTGTATGTCGCTAAA 57.905 30.769 0.00 0.00 0.00 1.85
891 924 7.602644 AGAGAAAAATTCACTGTATGTCGCTAA 59.397 33.333 0.00 0.00 0.00 3.09
892 925 7.097192 AGAGAAAAATTCACTGTATGTCGCTA 58.903 34.615 0.00 0.00 0.00 4.26
893 926 5.934625 AGAGAAAAATTCACTGTATGTCGCT 59.065 36.000 0.00 0.00 0.00 4.93
894 927 6.170675 AGAGAAAAATTCACTGTATGTCGC 57.829 37.500 0.00 0.00 0.00 5.19
895 928 7.746475 GGAAAGAGAAAAATTCACTGTATGTCG 59.254 37.037 0.00 0.00 30.85 4.35
896 929 8.787852 AGGAAAGAGAAAAATTCACTGTATGTC 58.212 33.333 0.00 0.00 30.85 3.06
897 930 8.697507 AGGAAAGAGAAAAATTCACTGTATGT 57.302 30.769 0.00 0.00 30.85 2.29
902 935 9.631452 GGAATTAGGAAAGAGAAAAATTCACTG 57.369 33.333 0.00 0.00 35.85 3.66
903 936 9.593565 AGGAATTAGGAAAGAGAAAAATTCACT 57.406 29.630 0.00 0.00 35.85 3.41
919 952 9.527157 CAGTCTGATCTATAGAAGGAATTAGGA 57.473 37.037 6.52 0.00 0.00 2.94
920 953 9.527157 TCAGTCTGATCTATAGAAGGAATTAGG 57.473 37.037 6.52 0.00 0.00 2.69
923 956 9.432982 AACTCAGTCTGATCTATAGAAGGAATT 57.567 33.333 6.52 0.00 0.00 2.17
924 957 8.859090 CAACTCAGTCTGATCTATAGAAGGAAT 58.141 37.037 6.52 2.26 0.00 3.01
1487 3025 4.139420 CGCGGTCGTAGTCGTCGT 62.139 66.667 0.00 0.00 37.24 4.34
1872 4047 4.647611 TGCGAAAACCTTCCAGATTTAGA 58.352 39.130 0.00 0.00 0.00 2.10
1875 4050 2.029918 GCTGCGAAAACCTTCCAGATTT 60.030 45.455 0.00 0.00 34.39 2.17
2425 4600 6.889198 TGAATCCTGAATATCGAGGAACTTT 58.111 36.000 6.74 0.00 41.78 2.66
2434 4609 6.169094 ACTAGCCATTGAATCCTGAATATCG 58.831 40.000 0.00 0.00 0.00 2.92
2453 4628 4.970662 TCAAAATGCAGGATTGACTAGC 57.029 40.909 7.33 0.00 0.00 3.42
2455 4630 5.185454 ACGATCAAAATGCAGGATTGACTA 58.815 37.500 12.19 0.00 36.03 2.59
2534 4719 7.856145 ATGTCAAGGAACAGATGAAGTAATC 57.144 36.000 0.00 0.00 31.50 1.75
2615 4863 3.992427 GGTAAGTTTGGTACCAGAAGACG 59.008 47.826 15.65 0.00 40.73 4.18
2654 4931 7.307455 GCGAATCCAAGGAACAGATAAGTAATC 60.307 40.741 0.00 0.00 34.52 1.75
2744 5093 3.062763 AGTTGAGAACACTGATCTTGCG 58.937 45.455 0.00 0.00 0.00 4.85
2792 5141 6.088085 GCCAAAAGTAACACAGATGATTTTCG 59.912 38.462 0.00 0.00 0.00 3.46
2810 5159 6.612306 GGTACTTCTAAAGATGTGCCAAAAG 58.388 40.000 20.81 0.00 46.60 2.27
2977 5378 5.690464 AGAGAACAAGATCACTAGCCAAT 57.310 39.130 0.00 0.00 0.00 3.16
3035 5494 2.891112 TGTTTGCCTGTTTCAGCTTTG 58.109 42.857 0.00 0.00 0.00 2.77
3068 5908 3.820467 CCCTGAACTTTGCTGTAACATGA 59.180 43.478 0.00 0.00 0.00 3.07
3114 5973 6.268387 CCCTAGGTTATACTCCGTCCAAAATA 59.732 42.308 8.29 0.00 0.00 1.40
3123 5982 6.243900 TCTATGAACCCTAGGTTATACTCCG 58.756 44.000 8.29 0.00 46.95 4.63
3140 5999 9.071276 GGGCAAGAGAAAATAATCATCTATGAA 57.929 33.333 0.00 0.00 40.69 2.57
3163 6025 7.337942 CAGGGATTTATCTAGTGAATATTGGGC 59.662 40.741 0.00 0.00 0.00 5.36
3185 6049 3.853355 ATTGAGCATACCTCTTCAGGG 57.147 47.619 0.00 0.00 45.53 4.45
3195 6059 3.382546 ACCAATCCAGCAATTGAGCATAC 59.617 43.478 10.34 0.00 38.64 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.