Multiple sequence alignment - TraesCS3B01G202900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G202900 chr3B 100.000 3087 0 0 1 3087 237113020 237109934 0.000000e+00 5701
1 TraesCS3B01G202900 chr3D 92.279 2176 71 43 926 3087 160562301 160560209 0.000000e+00 2998
2 TraesCS3B01G202900 chr3D 91.770 644 22 13 287 922 160562974 160562354 0.000000e+00 867
3 TraesCS3B01G202900 chr3A 89.425 1182 43 35 926 2098 186751560 186750452 0.000000e+00 1415
4 TraesCS3B01G202900 chr3A 93.284 938 21 20 2155 3087 186750456 186749556 0.000000e+00 1345
5 TraesCS3B01G202900 chr3A 91.939 521 14 10 416 922 186752119 186751613 0.000000e+00 704
6 TraesCS3B01G202900 chr3A 88.889 135 8 2 287 420 186757631 186757503 3.190000e-35 159
7 TraesCS3B01G202900 chr7A 87.795 254 26 5 30 281 515738578 515738828 3.010000e-75 292
8 TraesCS3B01G202900 chr2B 92.105 190 15 0 92 281 569143025 569143214 5.070000e-68 268
9 TraesCS3B01G202900 chr2B 85.052 194 28 1 88 281 569141167 569140975 2.430000e-46 196
10 TraesCS3B01G202900 chr7D 91.489 188 16 0 94 281 616232237 616232050 3.050000e-65 259
11 TraesCS3B01G202900 chr6D 82.008 239 33 8 33 268 58051178 58051409 8.730000e-46 195
12 TraesCS3B01G202900 chr6D 79.498 239 41 8 28 262 389970893 389971127 2.460000e-36 163
13 TraesCS3B01G202900 chr2D 80.400 250 43 5 33 281 394557056 394557300 5.260000e-43 185
14 TraesCS3B01G202900 chr5B 83.077 195 29 4 88 281 363557080 363556889 1.140000e-39 174
15 TraesCS3B01G202900 chr7B 81.019 216 30 11 71 281 135983321 135983530 8.860000e-36 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G202900 chr3B 237109934 237113020 3086 True 5701.000000 5701 100.000000 1 3087 1 chr3B.!!$R1 3086
1 TraesCS3B01G202900 chr3D 160560209 160562974 2765 True 1932.500000 2998 92.024500 287 3087 2 chr3D.!!$R1 2800
2 TraesCS3B01G202900 chr3A 186749556 186752119 2563 True 1154.666667 1415 91.549333 416 3087 3 chr3A.!!$R2 2671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 130 0.030638 TTCTGCAAAACTGCTTCGGC 59.969 50.0 0.00 0.00 42.19 5.54 F
609 619 0.032117 TCCTCCTCATCATCACCGGT 60.032 55.0 0.00 0.00 0.00 5.28 F
610 620 0.105593 CCTCCTCATCATCACCGGTG 59.894 60.0 29.26 29.26 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1547 1629 0.179200 CGCGGCGCTTGAAAGTAATT 60.179 50.000 30.54 0.0 0.00 1.40 R
1628 1710 0.734889 CAAATCCTGCACCCATCGAC 59.265 55.000 0.00 0.0 0.00 4.20 R
2151 2241 1.128136 CGTGCATTGTCTCTGCTCTTG 59.872 52.381 0.00 0.0 40.34 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.511600 GCGTCGCTATGGTTGGCT 60.512 61.111 10.68 0.00 0.00 4.75
18 19 2.106683 GCGTCGCTATGGTTGGCTT 61.107 57.895 10.68 0.00 0.00 4.35
19 20 1.644786 GCGTCGCTATGGTTGGCTTT 61.645 55.000 10.68 0.00 0.00 3.51
20 21 0.802494 CGTCGCTATGGTTGGCTTTT 59.198 50.000 0.00 0.00 0.00 2.27
21 22 1.202031 CGTCGCTATGGTTGGCTTTTC 60.202 52.381 0.00 0.00 0.00 2.29
22 23 1.132453 GTCGCTATGGTTGGCTTTTCC 59.868 52.381 0.00 0.00 0.00 3.13
23 24 1.004277 TCGCTATGGTTGGCTTTTCCT 59.996 47.619 0.00 0.00 35.26 3.36
24 25 2.237643 TCGCTATGGTTGGCTTTTCCTA 59.762 45.455 0.00 0.00 35.26 2.94
25 26 2.614057 CGCTATGGTTGGCTTTTCCTAG 59.386 50.000 0.00 0.00 35.26 3.02
26 27 2.952310 GCTATGGTTGGCTTTTCCTAGG 59.048 50.000 0.82 0.82 35.26 3.02
27 28 3.371595 GCTATGGTTGGCTTTTCCTAGGA 60.372 47.826 7.62 7.62 35.26 2.94
28 29 3.825908 ATGGTTGGCTTTTCCTAGGAA 57.174 42.857 20.72 20.72 35.26 3.36
29 30 3.825908 TGGTTGGCTTTTCCTAGGAAT 57.174 42.857 24.82 0.00 33.79 3.01
30 31 4.938575 TGGTTGGCTTTTCCTAGGAATA 57.061 40.909 24.82 18.62 33.79 1.75
31 32 5.263872 TGGTTGGCTTTTCCTAGGAATAA 57.736 39.130 24.82 18.55 33.79 1.40
32 33 5.646215 TGGTTGGCTTTTCCTAGGAATAAA 58.354 37.500 24.82 15.66 33.79 1.40
33 34 6.078664 TGGTTGGCTTTTCCTAGGAATAAAA 58.921 36.000 24.82 14.96 33.79 1.52
34 35 6.555360 TGGTTGGCTTTTCCTAGGAATAAAAA 59.445 34.615 24.82 14.62 33.79 1.94
57 58 8.723942 AAAAATACATAGGTGTTTTGTGCAAA 57.276 26.923 14.41 0.00 44.37 3.68
58 59 8.723942 AAAATACATAGGTGTTTTGTGCAAAA 57.276 26.923 13.18 6.04 43.76 2.44
59 60 8.723942 AAATACATAGGTGTTTTGTGCAAAAA 57.276 26.923 11.11 0.00 41.37 1.94
60 61 8.900983 AATACATAGGTGTTTTGTGCAAAAAT 57.099 26.923 2.11 0.00 41.37 1.82
61 62 6.601741 ACATAGGTGTTTTGTGCAAAAATG 57.398 33.333 2.11 12.35 41.37 2.32
62 63 5.007528 ACATAGGTGTTTTGTGCAAAAATGC 59.992 36.000 2.11 0.40 41.37 3.56
63 64 2.351111 AGGTGTTTTGTGCAAAAATGCG 59.649 40.909 2.11 0.00 41.37 4.73
64 65 2.095053 GGTGTTTTGTGCAAAAATGCGT 59.905 40.909 2.11 0.00 41.37 5.24
65 66 3.341410 GTGTTTTGTGCAAAAATGCGTC 58.659 40.909 2.11 0.40 41.37 5.19
66 67 2.028523 TGTTTTGTGCAAAAATGCGTCG 59.971 40.909 2.11 0.00 41.37 5.12
67 68 0.574454 TTTGTGCAAAAATGCGTCGC 59.426 45.000 11.10 11.10 37.69 5.19
68 69 0.248825 TTGTGCAAAAATGCGTCGCT 60.249 45.000 19.50 0.71 37.69 4.93
69 70 0.588737 TGTGCAAAAATGCGTCGCTA 59.411 45.000 19.50 5.27 37.69 4.26
70 71 1.198867 TGTGCAAAAATGCGTCGCTAT 59.801 42.857 19.50 7.52 37.69 2.97
71 72 1.578915 GTGCAAAAATGCGTCGCTATG 59.421 47.619 19.50 10.69 37.69 2.23
72 73 1.191096 GCAAAAATGCGTCGCTATGG 58.809 50.000 19.50 4.45 0.00 2.74
73 74 1.467374 GCAAAAATGCGTCGCTATGGT 60.467 47.619 19.50 0.00 0.00 3.55
74 75 2.862512 CAAAAATGCGTCGCTATGGTT 58.137 42.857 19.50 3.51 0.00 3.67
75 76 2.542766 AAAATGCGTCGCTATGGTTG 57.457 45.000 19.50 0.00 0.00 3.77
76 77 0.732571 AAATGCGTCGCTATGGTTGG 59.267 50.000 19.50 0.00 0.00 3.77
77 78 1.714899 AATGCGTCGCTATGGTTGGC 61.715 55.000 19.50 0.00 0.00 4.52
78 79 2.511600 GCGTCGCTATGGTTGGCT 60.512 61.111 10.68 0.00 0.00 4.75
79 80 2.106683 GCGTCGCTATGGTTGGCTT 61.107 57.895 10.68 0.00 0.00 4.35
80 81 1.644786 GCGTCGCTATGGTTGGCTTT 61.645 55.000 10.68 0.00 0.00 3.51
81 82 0.802494 CGTCGCTATGGTTGGCTTTT 59.198 50.000 0.00 0.00 0.00 2.27
82 83 1.202031 CGTCGCTATGGTTGGCTTTTC 60.202 52.381 0.00 0.00 0.00 2.29
83 84 1.132453 GTCGCTATGGTTGGCTTTTCC 59.868 52.381 0.00 0.00 0.00 3.13
84 85 1.004277 TCGCTATGGTTGGCTTTTCCT 59.996 47.619 0.00 0.00 35.26 3.36
85 86 2.237643 TCGCTATGGTTGGCTTTTCCTA 59.762 45.455 0.00 0.00 35.26 2.94
86 87 2.614057 CGCTATGGTTGGCTTTTCCTAG 59.386 50.000 0.00 0.00 35.26 3.02
87 88 2.952310 GCTATGGTTGGCTTTTCCTAGG 59.048 50.000 0.82 0.82 35.26 3.02
88 89 3.371595 GCTATGGTTGGCTTTTCCTAGGA 60.372 47.826 7.62 7.62 35.26 2.94
89 90 3.825908 ATGGTTGGCTTTTCCTAGGAA 57.174 42.857 20.72 20.72 35.26 3.36
90 91 3.825908 TGGTTGGCTTTTCCTAGGAAT 57.174 42.857 24.82 0.00 33.79 3.01
91 92 4.938575 TGGTTGGCTTTTCCTAGGAATA 57.061 40.909 24.82 18.62 33.79 1.75
92 93 5.263872 TGGTTGGCTTTTCCTAGGAATAA 57.736 39.130 24.82 18.55 33.79 1.40
93 94 5.646215 TGGTTGGCTTTTCCTAGGAATAAA 58.354 37.500 24.82 15.66 33.79 1.40
94 95 6.078664 TGGTTGGCTTTTCCTAGGAATAAAA 58.921 36.000 24.82 14.96 33.79 1.52
95 96 6.555360 TGGTTGGCTTTTCCTAGGAATAAAAA 59.445 34.615 24.82 14.62 33.79 1.94
128 129 2.490328 TTTCTGCAAAACTGCTTCGG 57.510 45.000 0.00 0.00 35.49 4.30
129 130 0.030638 TTCTGCAAAACTGCTTCGGC 59.969 50.000 0.00 0.00 42.19 5.54
130 131 1.372128 CTGCAAAACTGCTTCGGCC 60.372 57.895 0.00 0.00 40.91 6.13
131 132 1.799258 CTGCAAAACTGCTTCGGCCT 61.799 55.000 0.00 0.00 40.91 5.19
132 133 0.536233 TGCAAAACTGCTTCGGCCTA 60.536 50.000 0.00 0.00 40.91 3.93
133 134 0.169009 GCAAAACTGCTTCGGCCTAG 59.831 55.000 0.00 0.00 40.91 3.02
134 135 1.808411 CAAAACTGCTTCGGCCTAGA 58.192 50.000 0.00 0.00 40.91 2.43
135 136 1.734465 CAAAACTGCTTCGGCCTAGAG 59.266 52.381 0.00 0.00 40.91 2.43
136 137 0.391793 AAACTGCTTCGGCCTAGAGC 60.392 55.000 13.17 13.17 40.91 4.09
145 146 4.364318 GCCTAGAGCCCTCACTCA 57.636 61.111 0.00 0.00 39.26 3.41
146 147 1.819905 GCCTAGAGCCCTCACTCAC 59.180 63.158 0.00 0.00 39.26 3.51
147 148 0.686112 GCCTAGAGCCCTCACTCACT 60.686 60.000 0.00 0.00 39.26 3.41
148 149 1.110442 CCTAGAGCCCTCACTCACTG 58.890 60.000 0.00 0.00 39.26 3.66
149 150 1.341482 CCTAGAGCCCTCACTCACTGA 60.341 57.143 0.00 0.00 39.26 3.41
150 151 1.748493 CTAGAGCCCTCACTCACTGAC 59.252 57.143 0.00 0.00 39.26 3.51
151 152 0.178950 AGAGCCCTCACTCACTGACA 60.179 55.000 0.00 0.00 39.26 3.58
152 153 0.901124 GAGCCCTCACTCACTGACAT 59.099 55.000 0.00 0.00 36.65 3.06
153 154 0.612229 AGCCCTCACTCACTGACATG 59.388 55.000 0.00 0.00 0.00 3.21
154 155 0.322975 GCCCTCACTCACTGACATGT 59.677 55.000 0.00 0.00 0.00 3.21
155 156 1.550524 GCCCTCACTCACTGACATGTA 59.449 52.381 0.00 0.00 0.00 2.29
156 157 2.417924 GCCCTCACTCACTGACATGTAG 60.418 54.545 0.00 0.00 0.00 2.74
157 158 2.167281 CCCTCACTCACTGACATGTAGG 59.833 54.545 0.00 0.00 0.00 3.18
158 159 2.828520 CCTCACTCACTGACATGTAGGT 59.171 50.000 0.00 0.00 0.00 3.08
159 160 3.119316 CCTCACTCACTGACATGTAGGTC 60.119 52.174 0.00 0.00 38.29 3.85
160 161 2.826128 TCACTCACTGACATGTAGGTCC 59.174 50.000 0.00 0.00 36.97 4.46
161 162 1.819288 ACTCACTGACATGTAGGTCCG 59.181 52.381 0.00 0.00 36.97 4.79
162 163 1.819288 CTCACTGACATGTAGGTCCGT 59.181 52.381 0.00 0.00 35.93 4.69
163 164 3.014623 CTCACTGACATGTAGGTCCGTA 58.985 50.000 0.00 0.00 34.14 4.02
164 165 2.751259 TCACTGACATGTAGGTCCGTAC 59.249 50.000 0.00 0.00 34.14 3.67
165 166 2.490509 CACTGACATGTAGGTCCGTACA 59.509 50.000 0.00 2.68 34.14 2.90
166 167 2.490903 ACTGACATGTAGGTCCGTACAC 59.509 50.000 0.00 0.00 35.74 2.90
167 168 2.490509 CTGACATGTAGGTCCGTACACA 59.509 50.000 0.00 0.00 35.74 3.72
168 169 2.229543 TGACATGTAGGTCCGTACACAC 59.770 50.000 0.00 0.00 35.74 3.82
179 180 2.470196 CGTACACACGGATAGGTCTG 57.530 55.000 0.00 0.00 44.59 3.51
180 181 1.533338 CGTACACACGGATAGGTCTGC 60.533 57.143 0.00 0.00 44.59 4.26
181 182 1.475280 GTACACACGGATAGGTCTGCA 59.525 52.381 0.00 0.00 33.84 4.41
182 183 1.195115 ACACACGGATAGGTCTGCAT 58.805 50.000 0.00 0.00 33.84 3.96
183 184 2.384828 ACACACGGATAGGTCTGCATA 58.615 47.619 0.00 0.00 33.84 3.14
184 185 2.965831 ACACACGGATAGGTCTGCATAT 59.034 45.455 0.00 0.00 33.84 1.78
185 186 3.243873 ACACACGGATAGGTCTGCATATG 60.244 47.826 0.00 0.00 33.84 1.78
186 187 2.965831 ACACGGATAGGTCTGCATATGT 59.034 45.455 4.29 0.00 33.84 2.29
187 188 4.022329 CACACGGATAGGTCTGCATATGTA 60.022 45.833 4.29 0.00 33.84 2.29
188 189 4.772624 ACACGGATAGGTCTGCATATGTAT 59.227 41.667 4.29 0.00 33.84 2.29
189 190 5.246203 ACACGGATAGGTCTGCATATGTATT 59.754 40.000 4.29 0.00 33.84 1.89
190 191 6.166279 CACGGATAGGTCTGCATATGTATTT 58.834 40.000 4.29 0.00 33.84 1.40
191 192 6.650807 CACGGATAGGTCTGCATATGTATTTT 59.349 38.462 4.29 0.00 33.84 1.82
192 193 6.650807 ACGGATAGGTCTGCATATGTATTTTG 59.349 38.462 4.29 0.00 33.84 2.44
193 194 6.650807 CGGATAGGTCTGCATATGTATTTTGT 59.349 38.462 4.29 0.00 0.00 2.83
194 195 7.360353 CGGATAGGTCTGCATATGTATTTTGTG 60.360 40.741 4.29 0.00 0.00 3.33
195 196 7.661437 GGATAGGTCTGCATATGTATTTTGTGA 59.339 37.037 4.29 0.00 0.00 3.58
196 197 9.224267 GATAGGTCTGCATATGTATTTTGTGAT 57.776 33.333 4.29 0.00 0.00 3.06
197 198 7.502120 AGGTCTGCATATGTATTTTGTGATC 57.498 36.000 4.29 0.00 0.00 2.92
198 199 6.203530 AGGTCTGCATATGTATTTTGTGATCG 59.796 38.462 4.29 0.00 0.00 3.69
199 200 6.017934 GGTCTGCATATGTATTTTGTGATCGT 60.018 38.462 4.29 0.00 0.00 3.73
200 201 7.170828 GGTCTGCATATGTATTTTGTGATCGTA 59.829 37.037 4.29 0.00 0.00 3.43
201 202 8.712363 GTCTGCATATGTATTTTGTGATCGTAT 58.288 33.333 4.29 0.00 0.00 3.06
202 203 8.711457 TCTGCATATGTATTTTGTGATCGTATG 58.289 33.333 4.29 0.00 33.67 2.39
203 204 8.376889 TGCATATGTATTTTGTGATCGTATGT 57.623 30.769 4.29 0.00 33.32 2.29
204 205 8.281893 TGCATATGTATTTTGTGATCGTATGTG 58.718 33.333 4.29 0.00 33.32 3.21
205 206 7.269084 GCATATGTATTTTGTGATCGTATGTGC 59.731 37.037 4.29 0.00 33.32 4.57
206 207 6.676237 ATGTATTTTGTGATCGTATGTGCA 57.324 33.333 0.00 0.00 0.00 4.57
207 208 5.863898 TGTATTTTGTGATCGTATGTGCAC 58.136 37.500 10.75 10.75 0.00 4.57
208 209 3.447752 TTTTGTGATCGTATGTGCACG 57.552 42.857 13.13 0.00 43.28 5.34
209 210 0.718904 TTGTGATCGTATGTGCACGC 59.281 50.000 13.13 4.07 41.67 5.34
210 211 0.108851 TGTGATCGTATGTGCACGCT 60.109 50.000 13.13 4.56 41.67 5.07
211 212 0.999406 GTGATCGTATGTGCACGCTT 59.001 50.000 13.13 1.99 41.67 4.68
212 213 0.998669 TGATCGTATGTGCACGCTTG 59.001 50.000 13.13 2.36 41.67 4.01
213 214 1.277326 GATCGTATGTGCACGCTTGA 58.723 50.000 13.13 8.20 41.67 3.02
214 215 1.256376 GATCGTATGTGCACGCTTGAG 59.744 52.381 13.13 1.47 41.67 3.02
215 216 0.038618 TCGTATGTGCACGCTTGAGT 60.039 50.000 13.13 0.00 41.67 3.41
216 217 0.366871 CGTATGTGCACGCTTGAGTC 59.633 55.000 13.13 0.00 34.78 3.36
217 218 1.428448 GTATGTGCACGCTTGAGTCA 58.572 50.000 13.13 0.00 0.00 3.41
218 219 1.798223 GTATGTGCACGCTTGAGTCAA 59.202 47.619 13.13 5.25 0.00 3.18
219 220 0.870393 ATGTGCACGCTTGAGTCAAG 59.130 50.000 25.68 25.68 43.57 3.02
220 221 0.461870 TGTGCACGCTTGAGTCAAGT 60.462 50.000 28.95 12.54 42.77 3.16
221 222 0.657840 GTGCACGCTTGAGTCAAGTT 59.342 50.000 28.95 16.62 42.77 2.66
222 223 1.864711 GTGCACGCTTGAGTCAAGTTA 59.135 47.619 28.95 12.01 42.77 2.24
223 224 2.286833 GTGCACGCTTGAGTCAAGTTAA 59.713 45.455 28.95 11.79 42.77 2.01
224 225 2.543848 TGCACGCTTGAGTCAAGTTAAG 59.456 45.455 28.95 20.61 42.77 1.85
225 226 2.544267 GCACGCTTGAGTCAAGTTAAGT 59.456 45.455 28.95 21.13 42.77 2.24
226 227 3.604772 GCACGCTTGAGTCAAGTTAAGTG 60.605 47.826 28.95 28.45 42.77 3.16
227 228 3.802139 CACGCTTGAGTCAAGTTAAGTGA 59.198 43.478 28.95 0.00 42.77 3.41
228 229 3.802685 ACGCTTGAGTCAAGTTAAGTGAC 59.197 43.478 28.95 12.33 42.77 3.67
237 238 5.452777 GTCAAGTTAAGTGACTGCAATTCC 58.547 41.667 10.62 0.00 41.80 3.01
238 239 5.008613 GTCAAGTTAAGTGACTGCAATTCCA 59.991 40.000 10.62 0.00 41.80 3.53
239 240 5.769662 TCAAGTTAAGTGACTGCAATTCCAT 59.230 36.000 0.00 0.00 33.83 3.41
240 241 6.939730 TCAAGTTAAGTGACTGCAATTCCATA 59.060 34.615 0.00 0.00 33.83 2.74
241 242 7.611467 TCAAGTTAAGTGACTGCAATTCCATAT 59.389 33.333 0.00 0.00 33.83 1.78
242 243 7.944729 AGTTAAGTGACTGCAATTCCATATT 57.055 32.000 0.00 0.00 33.83 1.28
243 244 8.353423 AGTTAAGTGACTGCAATTCCATATTT 57.647 30.769 0.00 0.00 33.83 1.40
244 245 8.806146 AGTTAAGTGACTGCAATTCCATATTTT 58.194 29.630 0.00 0.00 33.83 1.82
245 246 9.076596 GTTAAGTGACTGCAATTCCATATTTTC 57.923 33.333 0.00 0.00 33.83 2.29
246 247 6.839124 AGTGACTGCAATTCCATATTTTCA 57.161 33.333 0.00 0.00 0.00 2.69
247 248 7.230849 AGTGACTGCAATTCCATATTTTCAA 57.769 32.000 0.00 0.00 0.00 2.69
248 249 7.669427 AGTGACTGCAATTCCATATTTTCAAA 58.331 30.769 0.00 0.00 0.00 2.69
249 250 7.816031 AGTGACTGCAATTCCATATTTTCAAAG 59.184 33.333 0.00 0.00 0.00 2.77
250 251 7.599998 GTGACTGCAATTCCATATTTTCAAAGT 59.400 33.333 0.00 0.00 0.00 2.66
251 252 8.149647 TGACTGCAATTCCATATTTTCAAAGTT 58.850 29.630 0.00 0.00 0.00 2.66
252 253 8.538409 ACTGCAATTCCATATTTTCAAAGTTC 57.462 30.769 0.00 0.00 0.00 3.01
253 254 8.370182 ACTGCAATTCCATATTTTCAAAGTTCT 58.630 29.630 0.00 0.00 0.00 3.01
254 255 9.859427 CTGCAATTCCATATTTTCAAAGTTCTA 57.141 29.630 0.00 0.00 0.00 2.10
255 256 9.859427 TGCAATTCCATATTTTCAAAGTTCTAG 57.141 29.630 0.00 0.00 0.00 2.43
256 257 8.811378 GCAATTCCATATTTTCAAAGTTCTAGC 58.189 33.333 0.00 0.00 0.00 3.42
257 258 9.859427 CAATTCCATATTTTCAAAGTTCTAGCA 57.141 29.630 0.00 0.00 0.00 3.49
258 259 9.860898 AATTCCATATTTTCAAAGTTCTAGCAC 57.139 29.630 0.00 0.00 0.00 4.40
259 260 7.994425 TCCATATTTTCAAAGTTCTAGCACA 57.006 32.000 0.00 0.00 0.00 4.57
260 261 8.402798 TCCATATTTTCAAAGTTCTAGCACAA 57.597 30.769 0.00 0.00 0.00 3.33
261 262 8.855110 TCCATATTTTCAAAGTTCTAGCACAAA 58.145 29.630 0.00 0.00 0.00 2.83
262 263 9.132521 CCATATTTTCAAAGTTCTAGCACAAAG 57.867 33.333 0.00 0.00 0.00 2.77
263 264 8.642020 CATATTTTCAAAGTTCTAGCACAAAGC 58.358 33.333 0.00 0.00 46.19 3.51
276 277 3.103738 GCACAAAGCTGAATATCAAGCG 58.896 45.455 0.00 0.00 41.15 4.68
277 278 3.103738 CACAAAGCTGAATATCAAGCGC 58.896 45.455 0.00 0.00 0.00 5.92
278 279 2.749076 ACAAAGCTGAATATCAAGCGCA 59.251 40.909 11.47 0.00 0.00 6.09
279 280 3.191162 ACAAAGCTGAATATCAAGCGCAA 59.809 39.130 11.47 0.00 0.00 4.85
280 281 3.687572 AAGCTGAATATCAAGCGCAAG 57.312 42.857 11.47 0.26 43.44 4.01
281 282 2.910199 AGCTGAATATCAAGCGCAAGA 58.090 42.857 11.47 7.32 43.02 3.02
282 283 2.611292 AGCTGAATATCAAGCGCAAGAC 59.389 45.455 11.47 0.00 43.02 3.01
283 284 2.286654 GCTGAATATCAAGCGCAAGACC 60.287 50.000 11.47 0.00 43.02 3.85
284 285 3.201290 CTGAATATCAAGCGCAAGACCT 58.799 45.455 11.47 0.00 43.02 3.85
285 286 3.198068 TGAATATCAAGCGCAAGACCTC 58.802 45.455 11.47 5.22 43.02 3.85
295 296 6.479001 TCAAGCGCAAGACCTCTATTATTAAC 59.521 38.462 11.47 0.00 43.02 2.01
296 297 5.914033 AGCGCAAGACCTCTATTATTAACA 58.086 37.500 11.47 0.00 43.02 2.41
318 319 6.516718 ACATAAACAGGAGTCGAGATAATGG 58.483 40.000 0.00 0.00 0.00 3.16
322 323 3.634448 ACAGGAGTCGAGATAATGGTCAG 59.366 47.826 0.00 0.00 0.00 3.51
327 328 2.983136 GTCGAGATAATGGTCAGATGCG 59.017 50.000 0.00 0.00 0.00 4.73
335 336 1.812922 GGTCAGATGCGCTCCACTG 60.813 63.158 9.73 12.54 0.00 3.66
363 364 1.507562 CACACAAGTGCATGTCGGTA 58.492 50.000 0.00 0.00 39.21 4.02
364 365 1.460743 CACACAAGTGCATGTCGGTAG 59.539 52.381 0.00 0.00 39.21 3.18
365 366 0.443869 CACAAGTGCATGTCGGTAGC 59.556 55.000 0.00 0.00 0.00 3.58
366 367 1.014044 ACAAGTGCATGTCGGTAGCG 61.014 55.000 8.29 8.29 0.00 4.26
367 368 1.447838 AAGTGCATGTCGGTAGCGG 60.448 57.895 15.23 0.00 0.00 5.52
368 369 2.125673 GTGCATGTCGGTAGCGGT 60.126 61.111 15.23 0.00 0.00 5.68
397 398 3.444916 CAAGCTGATTCATCACCAATGC 58.555 45.455 0.00 0.00 35.17 3.56
399 400 2.688446 AGCTGATTCATCACCAATGCAG 59.312 45.455 0.00 0.00 35.17 4.41
452 454 5.070847 ACCTTGCATCTGTTTTCTTCCAAAT 59.929 36.000 0.00 0.00 0.00 2.32
453 455 6.267471 ACCTTGCATCTGTTTTCTTCCAAATA 59.733 34.615 0.00 0.00 0.00 1.40
454 456 7.153985 CCTTGCATCTGTTTTCTTCCAAATAA 58.846 34.615 0.00 0.00 0.00 1.40
455 457 7.656948 CCTTGCATCTGTTTTCTTCCAAATAAA 59.343 33.333 0.00 0.00 0.00 1.40
565 571 2.816083 CGCGGCGAATTACCCACA 60.816 61.111 19.16 0.00 0.00 4.17
566 572 2.808958 CGCGGCGAATTACCCACAG 61.809 63.158 19.16 0.00 0.00 3.66
602 612 1.059006 GTGCCCCTCCTCCTCATCAT 61.059 60.000 0.00 0.00 0.00 2.45
603 613 0.765903 TGCCCCTCCTCCTCATCATC 60.766 60.000 0.00 0.00 0.00 2.92
604 614 0.765903 GCCCCTCCTCCTCATCATCA 60.766 60.000 0.00 0.00 0.00 3.07
605 615 1.055040 CCCCTCCTCCTCATCATCAC 58.945 60.000 0.00 0.00 0.00 3.06
606 616 1.055040 CCCTCCTCCTCATCATCACC 58.945 60.000 0.00 0.00 0.00 4.02
607 617 0.678395 CCTCCTCCTCATCATCACCG 59.322 60.000 0.00 0.00 0.00 4.94
608 618 0.678395 CTCCTCCTCATCATCACCGG 59.322 60.000 0.00 0.00 0.00 5.28
609 619 0.032117 TCCTCCTCATCATCACCGGT 60.032 55.000 0.00 0.00 0.00 5.28
610 620 0.105593 CCTCCTCATCATCACCGGTG 59.894 60.000 29.26 29.26 0.00 4.94
611 621 1.114627 CTCCTCATCATCACCGGTGA 58.885 55.000 37.79 37.79 44.59 4.02
612 622 1.482182 CTCCTCATCATCACCGGTGAA 59.518 52.381 39.04 25.44 43.58 3.18
613 623 1.905894 TCCTCATCATCACCGGTGAAA 59.094 47.619 39.04 29.33 43.58 2.69
688 698 1.076995 CAAGAAACCCCGATCCCCC 60.077 63.158 0.00 0.00 0.00 5.40
689 699 1.230182 AAGAAACCCCGATCCCCCT 60.230 57.895 0.00 0.00 0.00 4.79
690 700 1.279749 AAGAAACCCCGATCCCCCTC 61.280 60.000 0.00 0.00 0.00 4.30
691 701 1.999002 GAAACCCCGATCCCCCTCA 60.999 63.158 0.00 0.00 0.00 3.86
692 702 2.266816 GAAACCCCGATCCCCCTCAC 62.267 65.000 0.00 0.00 0.00 3.51
697 707 1.381872 CCGATCCCCCTCACTCACT 60.382 63.158 0.00 0.00 0.00 3.41
732 742 1.080772 GCATCATCGCCATGCCATG 60.081 57.895 0.00 0.00 40.79 3.66
779 795 1.549265 CCCAACCCAAGTTCCTAACCC 60.549 57.143 0.00 0.00 32.45 4.11
792 814 1.466386 TAACCCCACCCACACCCAT 60.466 57.895 0.00 0.00 0.00 4.00
848 870 1.135199 ACATATTCTGTCGTCGCCGTT 60.135 47.619 0.00 0.00 29.94 4.44
853 875 0.673333 TCTGTCGTCGCCGTTACCTA 60.673 55.000 0.00 0.00 35.01 3.08
924 995 1.555075 ACTGGGCAACATCGTATCACT 59.445 47.619 0.00 0.00 39.74 3.41
933 1007 2.695666 ACATCGTATCACTGGCTTAGCT 59.304 45.455 3.59 0.00 0.00 3.32
968 1044 5.957774 AGGTGAATTAATTGGGCACTAACAT 59.042 36.000 5.17 0.00 0.00 2.71
971 1047 6.751888 GTGAATTAATTGGGCACTAACATCAC 59.248 38.462 5.17 0.00 0.00 3.06
977 1053 1.683011 GGGCACTAACATCACCAGCAT 60.683 52.381 0.00 0.00 0.00 3.79
1183 1261 4.679955 TACGCACGCACGCACGTA 62.680 61.111 12.30 12.30 46.34 3.57
1204 1286 4.821589 ACGCGGCCTTGCTAGCTC 62.822 66.667 17.23 2.43 32.38 4.09
1206 1288 4.514577 GCGGCCTTGCTAGCTCGA 62.515 66.667 17.23 0.99 32.02 4.04
1207 1289 2.583593 CGGCCTTGCTAGCTCGAC 60.584 66.667 17.23 4.13 0.00 4.20
1208 1290 2.202946 GGCCTTGCTAGCTCGACC 60.203 66.667 17.23 8.87 0.00 4.79
1209 1291 2.583593 GCCTTGCTAGCTCGACCG 60.584 66.667 17.23 0.00 0.00 4.79
1210 1292 2.885861 CCTTGCTAGCTCGACCGT 59.114 61.111 17.23 0.00 0.00 4.83
1211 1293 1.215647 CCTTGCTAGCTCGACCGTT 59.784 57.895 17.23 0.00 0.00 4.44
1212 1294 0.454600 CCTTGCTAGCTCGACCGTTA 59.545 55.000 17.23 0.00 0.00 3.18
1213 1295 1.546834 CTTGCTAGCTCGACCGTTAC 58.453 55.000 17.23 0.00 0.00 2.50
1214 1296 1.132643 CTTGCTAGCTCGACCGTTACT 59.867 52.381 17.23 0.00 0.00 2.24
1218 1300 1.736126 CTAGCTCGACCGTTACTGTGA 59.264 52.381 0.00 0.00 0.00 3.58
1219 1301 0.240411 AGCTCGACCGTTACTGTGAC 59.760 55.000 0.00 0.00 0.00 3.67
1220 1302 0.240411 GCTCGACCGTTACTGTGACT 59.760 55.000 1.13 0.00 0.00 3.41
1221 1303 1.965083 CTCGACCGTTACTGTGACTG 58.035 55.000 1.13 0.00 0.00 3.51
1222 1304 1.534163 CTCGACCGTTACTGTGACTGA 59.466 52.381 1.36 0.00 0.00 3.41
1223 1305 1.265095 TCGACCGTTACTGTGACTGAC 59.735 52.381 1.36 0.00 0.00 3.51
1224 1306 1.266175 CGACCGTTACTGTGACTGACT 59.734 52.381 1.36 0.00 0.00 3.41
1225 1307 2.662700 GACCGTTACTGTGACTGACTG 58.337 52.381 1.36 0.00 0.00 3.51
1226 1308 2.292569 GACCGTTACTGTGACTGACTGA 59.707 50.000 1.36 0.00 0.00 3.41
1227 1309 2.034305 ACCGTTACTGTGACTGACTGAC 59.966 50.000 1.36 0.00 0.00 3.51
1228 1310 2.293677 CCGTTACTGTGACTGACTGACT 59.706 50.000 1.13 0.00 0.00 3.41
1229 1311 3.300857 CGTTACTGTGACTGACTGACTG 58.699 50.000 1.13 0.00 0.00 3.51
1230 1312 3.003378 CGTTACTGTGACTGACTGACTGA 59.997 47.826 1.13 0.00 0.00 3.41
1231 1313 4.291783 GTTACTGTGACTGACTGACTGAC 58.708 47.826 0.00 0.00 0.00 3.51
1232 1314 2.660572 ACTGTGACTGACTGACTGACT 58.339 47.619 0.00 0.00 0.00 3.41
1233 1315 2.360483 ACTGTGACTGACTGACTGACTG 59.640 50.000 0.00 0.00 0.00 3.51
1234 1316 2.620585 CTGTGACTGACTGACTGACTGA 59.379 50.000 0.00 0.00 0.00 3.41
1238 1320 1.959985 ACTGACTGACTGACTGACTGG 59.040 52.381 0.00 0.00 0.00 4.00
1253 1335 4.666253 TGGTGCTGCCTGGGCTTC 62.666 66.667 13.05 5.15 42.51 3.86
1254 1336 4.357279 GGTGCTGCCTGGGCTTCT 62.357 66.667 13.05 0.00 42.51 2.85
1255 1337 2.282745 GTGCTGCCTGGGCTTCTT 60.283 61.111 13.05 0.00 42.51 2.52
1256 1338 2.282674 TGCTGCCTGGGCTTCTTG 60.283 61.111 13.05 0.13 42.51 3.02
1257 1339 3.066814 GCTGCCTGGGCTTCTTGG 61.067 66.667 13.05 0.00 42.51 3.61
1258 1340 3.066814 CTGCCTGGGCTTCTTGGC 61.067 66.667 13.05 0.00 45.10 4.52
1259 1341 3.580604 CTGCCTGGGCTTCTTGGCT 62.581 63.158 13.05 0.00 45.11 4.75
1260 1342 2.753446 GCCTGGGCTTCTTGGCTC 60.753 66.667 4.12 0.00 41.92 4.70
1261 1343 2.437359 CCTGGGCTTCTTGGCTCG 60.437 66.667 0.00 0.00 41.48 5.03
1262 1344 3.130160 CTGGGCTTCTTGGCTCGC 61.130 66.667 0.00 0.00 41.48 5.03
1263 1345 4.722700 TGGGCTTCTTGGCTCGCC 62.723 66.667 0.00 0.00 41.75 5.54
1417 1499 2.802667 CGTGCACGCCTACATGCTC 61.803 63.158 28.16 0.00 42.55 4.26
1537 1619 0.319900 GCTGCCTCTTCTTCGTCACA 60.320 55.000 0.00 0.00 0.00 3.58
1544 1626 3.172050 CTCTTCTTCGTCACATGGTACG 58.828 50.000 13.97 13.97 40.40 3.67
1545 1627 2.094906 TCTTCTTCGTCACATGGTACGG 60.095 50.000 18.31 7.01 39.52 4.02
1547 1629 1.887854 TCTTCGTCACATGGTACGGAA 59.112 47.619 18.31 11.83 39.52 4.30
1555 1637 5.121142 CGTCACATGGTACGGAAATTACTTT 59.879 40.000 12.71 0.00 35.51 2.66
1556 1638 6.540205 GTCACATGGTACGGAAATTACTTTC 58.460 40.000 0.00 0.00 40.09 2.62
1558 1640 6.711194 TCACATGGTACGGAAATTACTTTCAA 59.289 34.615 7.73 0.00 42.17 2.69
1559 1641 7.021196 CACATGGTACGGAAATTACTTTCAAG 58.979 38.462 7.73 3.97 42.17 3.02
1560 1642 5.616488 TGGTACGGAAATTACTTTCAAGC 57.384 39.130 7.73 3.47 42.17 4.01
1561 1643 4.152759 TGGTACGGAAATTACTTTCAAGCG 59.847 41.667 7.73 4.95 42.17 4.68
1562 1644 3.197434 ACGGAAATTACTTTCAAGCGC 57.803 42.857 0.00 0.00 42.17 5.92
1563 1645 2.095415 ACGGAAATTACTTTCAAGCGCC 60.095 45.455 2.29 0.00 42.17 6.53
1564 1646 2.515912 GGAAATTACTTTCAAGCGCCG 58.484 47.619 2.29 0.00 42.17 6.46
1565 1647 1.911464 GAAATTACTTTCAAGCGCCGC 59.089 47.619 2.29 0.00 40.45 6.53
1566 1648 0.179200 AATTACTTTCAAGCGCCGCG 60.179 50.000 8.83 8.83 0.00 6.46
1567 1649 1.017177 ATTACTTTCAAGCGCCGCGA 61.017 50.000 18.91 0.00 0.00 5.87
1568 1650 1.222766 TTACTTTCAAGCGCCGCGAA 61.223 50.000 18.91 0.91 0.00 4.70
1569 1651 1.222766 TACTTTCAAGCGCCGCGAAA 61.223 50.000 18.91 10.01 0.00 3.46
1570 1652 2.051703 TTTCAAGCGCCGCGAAAC 60.052 55.556 18.91 0.00 0.00 2.78
1571 1653 3.530398 TTTCAAGCGCCGCGAAACC 62.530 57.895 18.91 0.00 0.00 3.27
1573 1655 4.101790 CAAGCGCCGCGAAACCAT 62.102 61.111 18.91 0.00 0.00 3.55
1574 1656 4.101790 AAGCGCCGCGAAACCATG 62.102 61.111 18.91 0.00 0.00 3.66
1598 1680 2.304751 GCATTGGGCAAGAAGAATGG 57.695 50.000 0.00 0.00 43.97 3.16
1610 1692 4.927267 AGAAGAATGGTGGTGTGGATTA 57.073 40.909 0.00 0.00 0.00 1.75
1618 1700 9.354673 AGAATGGTGGTGTGGATTAATAATAAG 57.645 33.333 0.00 0.00 0.00 1.73
1619 1701 9.349713 GAATGGTGGTGTGGATTAATAATAAGA 57.650 33.333 0.00 0.00 0.00 2.10
1620 1702 8.924511 ATGGTGGTGTGGATTAATAATAAGAG 57.075 34.615 0.00 0.00 0.00 2.85
1622 1704 6.770785 GGTGGTGTGGATTAATAATAAGAGCA 59.229 38.462 0.00 0.00 0.00 4.26
1623 1705 7.255139 GGTGGTGTGGATTAATAATAAGAGCAC 60.255 40.741 14.06 14.06 32.88 4.40
1625 1707 7.282224 TGGTGTGGATTAATAATAAGAGCACAC 59.718 37.037 0.00 0.00 37.77 3.82
1626 1708 7.499232 GGTGTGGATTAATAATAAGAGCACACT 59.501 37.037 5.07 0.00 38.33 3.55
1627 1709 8.552034 GTGTGGATTAATAATAAGAGCACACTC 58.448 37.037 0.11 0.00 43.82 3.51
1690 1772 0.113580 TCATGATCGGGATCGGGGTA 59.886 55.000 4.36 0.00 40.63 3.69
1798 1880 1.868251 GCTCATCACCGTCGTCGTC 60.868 63.158 0.71 0.00 35.01 4.20
1822 1904 2.557805 GTCGTCTACGTGACCGCA 59.442 61.111 0.00 0.00 42.49 5.69
1911 1993 4.108299 CCCCAGCGGTGCACCATA 62.108 66.667 34.16 0.00 35.14 2.74
1912 1994 2.824041 CCCAGCGGTGCACCATAC 60.824 66.667 34.16 22.51 35.14 2.39
1913 1995 2.824041 CCAGCGGTGCACCATACC 60.824 66.667 34.16 18.83 35.14 2.73
1914 1996 2.824041 CAGCGGTGCACCATACCC 60.824 66.667 34.16 16.43 34.66 3.69
1915 1997 4.109675 AGCGGTGCACCATACCCC 62.110 66.667 34.16 14.73 34.66 4.95
1917 1999 4.849310 CGGTGCACCATACCCCGG 62.849 72.222 34.16 12.56 34.66 5.73
2085 2167 4.322198 GGACAAGGAGTACACCGATGTTTA 60.322 45.833 19.21 0.00 40.48 2.01
2093 2181 5.797051 AGTACACCGATGTTTAAAAGCCTA 58.203 37.500 0.00 0.00 40.48 3.93
2095 2183 5.622770 ACACCGATGTTTAAAAGCCTAAG 57.377 39.130 0.00 0.00 34.46 2.18
2096 2184 4.082949 ACACCGATGTTTAAAAGCCTAAGC 60.083 41.667 0.00 0.00 34.46 3.09
2123 2213 4.040339 TGAATGGTAAGAAGTGCAGAGACA 59.960 41.667 0.00 0.00 0.00 3.41
2135 2225 1.638133 CAGAGACAATGAGCCTGACG 58.362 55.000 0.00 0.00 0.00 4.35
2151 2241 1.463056 TGACGCAATGAATGGTCGAAC 59.537 47.619 0.00 0.00 34.09 3.95
2155 2245 2.159430 CGCAATGAATGGTCGAACAAGA 59.841 45.455 7.51 0.00 0.00 3.02
2164 2254 1.000163 GGTCGAACAAGAGCAGAGACA 60.000 52.381 0.00 0.00 38.41 3.41
2207 2297 4.360482 GTTTTCGAACAATTGCTTGCTC 57.640 40.909 5.05 0.00 35.69 4.26
2213 2303 3.737266 CGAACAATTGCTTGCTCATTTGT 59.263 39.130 5.05 7.89 40.27 2.83
2214 2304 4.375606 CGAACAATTGCTTGCTCATTTGTG 60.376 41.667 5.05 0.00 39.22 3.33
2215 2305 4.325028 ACAATTGCTTGCTCATTTGTGA 57.675 36.364 5.05 0.00 38.40 3.58
2216 2306 4.890088 ACAATTGCTTGCTCATTTGTGAT 58.110 34.783 5.05 0.00 38.40 3.06
2217 2307 6.028146 ACAATTGCTTGCTCATTTGTGATA 57.972 33.333 5.05 0.00 38.40 2.15
2218 2308 6.636705 ACAATTGCTTGCTCATTTGTGATAT 58.363 32.000 5.05 0.00 38.40 1.63
2219 2309 7.774134 ACAATTGCTTGCTCATTTGTGATATA 58.226 30.769 5.05 0.00 38.40 0.86
2220 2310 8.252417 ACAATTGCTTGCTCATTTGTGATATAA 58.748 29.630 5.05 0.00 38.40 0.98
2221 2311 8.752254 CAATTGCTTGCTCATTTGTGATATAAG 58.248 33.333 0.00 0.00 0.00 1.73
2222 2312 7.395190 TTGCTTGCTCATTTGTGATATAAGT 57.605 32.000 0.00 0.00 0.00 2.24
2351 2441 4.586421 TGTAATCACAATGCCCTTGTCAAA 59.414 37.500 0.00 0.00 44.99 2.69
2380 2470 7.118535 TGGAACATGCAAATCAAAATTGATCAG 59.881 33.333 8.96 6.33 46.60 2.90
2382 2472 7.827819 ACATGCAAATCAAAATTGATCAGAG 57.172 32.000 8.96 4.01 46.60 3.35
2419 2509 7.866393 AGCAACGACACAGGTATACTAATAATC 59.134 37.037 2.25 0.00 0.00 1.75
2745 2838 0.326927 AACCATGACCTTACCCCACG 59.673 55.000 0.00 0.00 0.00 4.94
2820 2915 5.990996 TGGTCAAATCTGCAAAAGGAATTTC 59.009 36.000 0.00 0.00 0.00 2.17
2943 3038 0.179073 CCGACCTGTATTCAGCCCAG 60.179 60.000 0.00 0.00 40.09 4.45
3049 3144 1.008327 TCCTCCATCCAGTAAGCCTCA 59.992 52.381 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.644786 AAAGCCAACCATAGCGACGC 61.645 55.000 13.03 13.03 0.00 5.19
1 2 0.802494 AAAAGCCAACCATAGCGACG 59.198 50.000 0.00 0.00 0.00 5.12
2 3 1.132453 GGAAAAGCCAACCATAGCGAC 59.868 52.381 0.00 0.00 36.34 5.19
3 4 1.004277 AGGAAAAGCCAACCATAGCGA 59.996 47.619 0.00 0.00 40.02 4.93
4 5 1.463674 AGGAAAAGCCAACCATAGCG 58.536 50.000 0.00 0.00 40.02 4.26
5 6 2.952310 CCTAGGAAAAGCCAACCATAGC 59.048 50.000 1.05 0.00 40.02 2.97
6 7 4.503714 TCCTAGGAAAAGCCAACCATAG 57.496 45.455 9.71 0.00 40.02 2.23
7 8 4.938575 TTCCTAGGAAAAGCCAACCATA 57.061 40.909 22.27 0.00 40.02 2.74
8 9 3.825908 TTCCTAGGAAAAGCCAACCAT 57.174 42.857 22.27 0.00 40.02 3.55
9 10 3.825908 ATTCCTAGGAAAAGCCAACCA 57.174 42.857 27.65 1.25 40.02 3.67
10 11 6.599356 TTTTATTCCTAGGAAAAGCCAACC 57.401 37.500 27.65 0.00 40.02 3.77
32 33 8.723942 TTTGCACAAAACACCTATGTATTTTT 57.276 26.923 0.00 0.00 38.45 1.94
33 34 8.723942 TTTTGCACAAAACACCTATGTATTTT 57.276 26.923 4.47 0.00 38.45 1.82
34 35 8.723942 TTTTTGCACAAAACACCTATGTATTT 57.276 26.923 8.01 0.00 39.70 1.40
35 36 8.772705 CATTTTTGCACAAAACACCTATGTATT 58.227 29.630 8.01 0.00 39.70 1.89
36 37 7.095271 GCATTTTTGCACAAAACACCTATGTAT 60.095 33.333 8.01 0.00 39.70 2.29
37 38 6.201806 GCATTTTTGCACAAAACACCTATGTA 59.798 34.615 8.01 0.00 39.70 2.29
38 39 5.007528 GCATTTTTGCACAAAACACCTATGT 59.992 36.000 8.01 0.00 39.70 2.29
39 40 5.442402 GCATTTTTGCACAAAACACCTATG 58.558 37.500 8.01 9.70 39.70 2.23
40 41 4.210955 CGCATTTTTGCACAAAACACCTAT 59.789 37.500 8.01 0.00 39.70 2.57
41 42 3.553511 CGCATTTTTGCACAAAACACCTA 59.446 39.130 8.01 0.00 39.70 3.08
42 43 2.351111 CGCATTTTTGCACAAAACACCT 59.649 40.909 8.01 0.00 39.70 4.00
43 44 2.095053 ACGCATTTTTGCACAAAACACC 59.905 40.909 8.01 0.00 39.70 4.16
44 45 3.341410 GACGCATTTTTGCACAAAACAC 58.659 40.909 8.01 1.05 39.70 3.32
45 46 2.028523 CGACGCATTTTTGCACAAAACA 59.971 40.909 8.01 1.62 39.70 2.83
46 47 2.613164 CGACGCATTTTTGCACAAAAC 58.387 42.857 8.01 0.00 39.70 2.43
47 48 1.005557 GCGACGCATTTTTGCACAAAA 60.006 42.857 16.42 4.47 38.40 2.44
48 49 0.574454 GCGACGCATTTTTGCACAAA 59.426 45.000 16.42 0.00 34.41 2.83
49 50 0.248825 AGCGACGCATTTTTGCACAA 60.249 45.000 23.70 0.00 34.41 3.33
50 51 0.588737 TAGCGACGCATTTTTGCACA 59.411 45.000 23.70 0.00 34.41 4.57
51 52 1.578915 CATAGCGACGCATTTTTGCAC 59.421 47.619 23.70 0.00 34.41 4.57
52 53 1.467204 CCATAGCGACGCATTTTTGCA 60.467 47.619 23.70 0.00 34.41 4.08
53 54 1.191096 CCATAGCGACGCATTTTTGC 58.809 50.000 23.70 0.00 0.00 3.68
54 55 2.542766 ACCATAGCGACGCATTTTTG 57.457 45.000 23.70 11.00 0.00 2.44
55 56 2.415357 CCAACCATAGCGACGCATTTTT 60.415 45.455 23.70 2.80 0.00 1.94
56 57 1.132262 CCAACCATAGCGACGCATTTT 59.868 47.619 23.70 3.23 0.00 1.82
57 58 0.732571 CCAACCATAGCGACGCATTT 59.267 50.000 23.70 3.65 0.00 2.32
58 59 1.714899 GCCAACCATAGCGACGCATT 61.715 55.000 23.70 5.58 0.00 3.56
59 60 2.180204 GCCAACCATAGCGACGCAT 61.180 57.895 23.70 10.63 0.00 4.73
60 61 2.796483 AAGCCAACCATAGCGACGCA 62.796 55.000 23.70 8.56 0.00 5.24
61 62 1.644786 AAAGCCAACCATAGCGACGC 61.645 55.000 13.03 13.03 0.00 5.19
62 63 0.802494 AAAAGCCAACCATAGCGACG 59.198 50.000 0.00 0.00 0.00 5.12
63 64 1.132453 GGAAAAGCCAACCATAGCGAC 59.868 52.381 0.00 0.00 36.34 5.19
64 65 1.004277 AGGAAAAGCCAACCATAGCGA 59.996 47.619 0.00 0.00 40.02 4.93
65 66 1.463674 AGGAAAAGCCAACCATAGCG 58.536 50.000 0.00 0.00 40.02 4.26
66 67 2.952310 CCTAGGAAAAGCCAACCATAGC 59.048 50.000 1.05 0.00 40.02 2.97
67 68 4.503714 TCCTAGGAAAAGCCAACCATAG 57.496 45.455 9.71 0.00 40.02 2.23
68 69 4.938575 TTCCTAGGAAAAGCCAACCATA 57.061 40.909 22.27 0.00 40.02 2.74
69 70 3.825908 TTCCTAGGAAAAGCCAACCAT 57.174 42.857 22.27 0.00 40.02 3.55
70 71 3.825908 ATTCCTAGGAAAAGCCAACCA 57.174 42.857 27.65 1.25 40.02 3.67
71 72 6.599356 TTTTATTCCTAGGAAAAGCCAACC 57.401 37.500 27.65 0.00 40.02 3.77
115 116 1.734465 CTCTAGGCCGAAGCAGTTTTG 59.266 52.381 0.00 0.00 42.56 2.44
116 117 1.946283 GCTCTAGGCCGAAGCAGTTTT 60.946 52.381 18.52 0.00 42.56 2.43
117 118 0.391793 GCTCTAGGCCGAAGCAGTTT 60.392 55.000 18.52 0.00 42.56 2.66
118 119 1.219393 GCTCTAGGCCGAAGCAGTT 59.781 57.895 18.52 0.00 42.56 3.16
119 120 2.896443 GCTCTAGGCCGAAGCAGT 59.104 61.111 18.52 0.00 42.56 4.40
128 129 0.686112 AGTGAGTGAGGGCTCTAGGC 60.686 60.000 0.00 0.00 36.51 3.93
129 130 1.110442 CAGTGAGTGAGGGCTCTAGG 58.890 60.000 0.00 0.00 36.51 3.02
130 131 1.748493 GTCAGTGAGTGAGGGCTCTAG 59.252 57.143 0.00 0.00 35.13 2.43
131 132 1.075536 TGTCAGTGAGTGAGGGCTCTA 59.924 52.381 0.00 0.00 35.13 2.43
132 133 0.178950 TGTCAGTGAGTGAGGGCTCT 60.179 55.000 0.00 0.00 35.13 4.09
133 134 0.901124 ATGTCAGTGAGTGAGGGCTC 59.099 55.000 0.00 0.00 35.13 4.70
134 135 0.612229 CATGTCAGTGAGTGAGGGCT 59.388 55.000 0.00 0.00 35.13 5.19
135 136 0.322975 ACATGTCAGTGAGTGAGGGC 59.677 55.000 11.37 0.00 35.13 5.19
136 137 2.167281 CCTACATGTCAGTGAGTGAGGG 59.833 54.545 0.00 8.78 35.13 4.30
137 138 2.828520 ACCTACATGTCAGTGAGTGAGG 59.171 50.000 0.00 2.39 35.13 3.86
138 139 3.119316 GGACCTACATGTCAGTGAGTGAG 60.119 52.174 0.00 0.00 35.13 3.51
139 140 2.826128 GGACCTACATGTCAGTGAGTGA 59.174 50.000 0.00 0.00 36.97 3.41
140 141 2.416027 CGGACCTACATGTCAGTGAGTG 60.416 54.545 0.00 0.00 36.97 3.51
141 142 1.819288 CGGACCTACATGTCAGTGAGT 59.181 52.381 0.00 0.00 36.97 3.41
142 143 1.819288 ACGGACCTACATGTCAGTGAG 59.181 52.381 0.00 0.00 41.20 3.51
143 144 1.919240 ACGGACCTACATGTCAGTGA 58.081 50.000 0.00 0.00 41.20 3.41
144 145 2.490509 TGTACGGACCTACATGTCAGTG 59.509 50.000 0.00 0.00 42.39 3.66
145 146 2.490903 GTGTACGGACCTACATGTCAGT 59.509 50.000 0.00 0.00 44.18 3.41
146 147 2.490509 TGTGTACGGACCTACATGTCAG 59.509 50.000 0.00 0.00 36.97 3.51
147 148 2.229543 GTGTGTACGGACCTACATGTCA 59.770 50.000 0.00 0.00 36.97 3.58
148 149 2.730090 CGTGTGTACGGACCTACATGTC 60.730 54.545 0.00 0.00 46.23 3.06
149 150 1.200716 CGTGTGTACGGACCTACATGT 59.799 52.381 2.69 2.69 46.23 3.21
150 151 1.904144 CGTGTGTACGGACCTACATG 58.096 55.000 0.00 0.00 46.23 3.21
161 162 1.475280 TGCAGACCTATCCGTGTGTAC 59.525 52.381 0.00 0.00 30.00 2.90
162 163 1.842052 TGCAGACCTATCCGTGTGTA 58.158 50.000 0.00 0.00 30.00 2.90
163 164 1.195115 ATGCAGACCTATCCGTGTGT 58.805 50.000 0.00 0.00 30.00 3.72
164 165 3.243873 ACATATGCAGACCTATCCGTGTG 60.244 47.826 1.58 0.00 0.00 3.82
165 166 2.965831 ACATATGCAGACCTATCCGTGT 59.034 45.455 1.58 0.00 0.00 4.49
166 167 3.667497 ACATATGCAGACCTATCCGTG 57.333 47.619 1.58 0.00 0.00 4.94
167 168 6.360370 AAATACATATGCAGACCTATCCGT 57.640 37.500 1.58 0.00 0.00 4.69
168 169 6.650807 ACAAAATACATATGCAGACCTATCCG 59.349 38.462 1.58 0.00 0.00 4.18
169 170 7.661437 TCACAAAATACATATGCAGACCTATCC 59.339 37.037 1.58 0.00 0.00 2.59
170 171 8.607441 TCACAAAATACATATGCAGACCTATC 57.393 34.615 1.58 0.00 0.00 2.08
171 172 9.224267 GATCACAAAATACATATGCAGACCTAT 57.776 33.333 1.58 0.00 0.00 2.57
172 173 7.384932 CGATCACAAAATACATATGCAGACCTA 59.615 37.037 1.58 0.00 0.00 3.08
173 174 6.203530 CGATCACAAAATACATATGCAGACCT 59.796 38.462 1.58 0.00 0.00 3.85
174 175 6.017934 ACGATCACAAAATACATATGCAGACC 60.018 38.462 1.58 0.00 0.00 3.85
175 176 6.948353 ACGATCACAAAATACATATGCAGAC 58.052 36.000 1.58 0.00 0.00 3.51
176 177 8.711457 CATACGATCACAAAATACATATGCAGA 58.289 33.333 1.58 0.00 0.00 4.26
177 178 8.498358 ACATACGATCACAAAATACATATGCAG 58.502 33.333 1.58 0.00 0.00 4.41
178 179 8.281893 CACATACGATCACAAAATACATATGCA 58.718 33.333 1.58 0.00 0.00 3.96
179 180 7.269084 GCACATACGATCACAAAATACATATGC 59.731 37.037 1.58 0.00 0.00 3.14
180 181 8.281893 TGCACATACGATCACAAAATACATATG 58.718 33.333 0.00 0.00 0.00 1.78
181 182 8.282592 GTGCACATACGATCACAAAATACATAT 58.717 33.333 13.17 0.00 0.00 1.78
182 183 7.515998 CGTGCACATACGATCACAAAATACATA 60.516 37.037 18.64 0.00 46.46 2.29
183 184 6.486248 GTGCACATACGATCACAAAATACAT 58.514 36.000 13.17 0.00 0.00 2.29
184 185 5.445275 CGTGCACATACGATCACAAAATACA 60.445 40.000 18.64 0.00 46.46 2.29
185 186 4.955590 CGTGCACATACGATCACAAAATAC 59.044 41.667 18.64 0.00 46.46 1.89
186 187 4.493382 GCGTGCACATACGATCACAAAATA 60.493 41.667 18.64 0.00 46.46 1.40
187 188 3.727673 GCGTGCACATACGATCACAAAAT 60.728 43.478 18.64 0.00 46.46 1.82
188 189 2.412195 GCGTGCACATACGATCACAAAA 60.412 45.455 18.64 0.00 46.46 2.44
189 190 1.127766 GCGTGCACATACGATCACAAA 59.872 47.619 18.64 0.00 46.46 2.83
190 191 0.718904 GCGTGCACATACGATCACAA 59.281 50.000 18.64 0.00 46.46 3.33
191 192 0.108851 AGCGTGCACATACGATCACA 60.109 50.000 18.64 0.00 46.46 3.58
192 193 0.999406 AAGCGTGCACATACGATCAC 59.001 50.000 18.64 0.00 46.46 3.06
193 194 0.998669 CAAGCGTGCACATACGATCA 59.001 50.000 18.64 0.00 46.46 2.92
194 195 1.256376 CTCAAGCGTGCACATACGATC 59.744 52.381 18.64 0.00 46.46 3.69
195 196 1.280982 CTCAAGCGTGCACATACGAT 58.719 50.000 18.64 0.00 46.46 3.73
196 197 0.038618 ACTCAAGCGTGCACATACGA 60.039 50.000 18.64 6.75 46.46 3.43
197 198 0.366871 GACTCAAGCGTGCACATACG 59.633 55.000 18.64 3.54 46.28 3.06
198 199 1.428448 TGACTCAAGCGTGCACATAC 58.572 50.000 18.64 5.48 0.00 2.39
199 200 2.068519 CTTGACTCAAGCGTGCACATA 58.931 47.619 18.64 0.00 34.63 2.29
200 201 0.870393 CTTGACTCAAGCGTGCACAT 59.130 50.000 18.64 0.95 34.63 3.21
201 202 0.461870 ACTTGACTCAAGCGTGCACA 60.462 50.000 18.64 0.00 44.43 4.57
202 203 0.657840 AACTTGACTCAAGCGTGCAC 59.342 50.000 17.29 6.82 44.43 4.57
203 204 2.232756 TAACTTGACTCAAGCGTGCA 57.767 45.000 17.29 0.00 44.43 4.57
204 205 2.544267 ACTTAACTTGACTCAAGCGTGC 59.456 45.455 17.29 0.00 44.43 5.34
205 206 3.802139 TCACTTAACTTGACTCAAGCGTG 59.198 43.478 17.29 17.06 44.43 5.34
206 207 3.802685 GTCACTTAACTTGACTCAAGCGT 59.197 43.478 17.29 9.20 44.43 5.07
207 208 4.376450 GTCACTTAACTTGACTCAAGCG 57.624 45.455 17.29 7.36 44.43 4.68
214 215 5.008613 TGGAATTGCAGTCACTTAACTTGAC 59.991 40.000 0.00 4.82 43.24 3.18
215 216 5.129634 TGGAATTGCAGTCACTTAACTTGA 58.870 37.500 0.00 0.00 0.00 3.02
216 217 5.437289 TGGAATTGCAGTCACTTAACTTG 57.563 39.130 0.00 0.00 0.00 3.16
217 218 7.944729 ATATGGAATTGCAGTCACTTAACTT 57.055 32.000 5.69 0.00 0.00 2.66
218 219 7.944729 AATATGGAATTGCAGTCACTTAACT 57.055 32.000 5.69 0.00 0.00 2.24
219 220 8.986477 AAAATATGGAATTGCAGTCACTTAAC 57.014 30.769 5.69 0.00 0.00 2.01
220 221 8.801299 TGAAAATATGGAATTGCAGTCACTTAA 58.199 29.630 5.69 0.00 0.00 1.85
221 222 8.347004 TGAAAATATGGAATTGCAGTCACTTA 57.653 30.769 5.69 0.00 0.00 2.24
222 223 7.230849 TGAAAATATGGAATTGCAGTCACTT 57.769 32.000 5.69 0.00 0.00 3.16
223 224 6.839124 TGAAAATATGGAATTGCAGTCACT 57.161 33.333 5.69 0.00 0.00 3.41
224 225 7.599998 ACTTTGAAAATATGGAATTGCAGTCAC 59.400 33.333 5.69 0.00 0.00 3.67
225 226 7.669427 ACTTTGAAAATATGGAATTGCAGTCA 58.331 30.769 5.69 1.48 0.00 3.41
226 227 8.538409 AACTTTGAAAATATGGAATTGCAGTC 57.462 30.769 5.69 0.00 0.00 3.51
227 228 8.370182 AGAACTTTGAAAATATGGAATTGCAGT 58.630 29.630 5.69 0.00 0.00 4.40
228 229 8.767478 AGAACTTTGAAAATATGGAATTGCAG 57.233 30.769 5.69 0.00 0.00 4.41
229 230 9.859427 CTAGAACTTTGAAAATATGGAATTGCA 57.141 29.630 0.79 0.79 0.00 4.08
230 231 8.811378 GCTAGAACTTTGAAAATATGGAATTGC 58.189 33.333 0.00 0.00 0.00 3.56
231 232 9.859427 TGCTAGAACTTTGAAAATATGGAATTG 57.141 29.630 0.00 0.00 0.00 2.32
232 233 9.860898 GTGCTAGAACTTTGAAAATATGGAATT 57.139 29.630 0.00 0.00 0.00 2.17
233 234 9.023962 TGTGCTAGAACTTTGAAAATATGGAAT 57.976 29.630 1.64 0.00 0.00 3.01
234 235 8.402798 TGTGCTAGAACTTTGAAAATATGGAA 57.597 30.769 1.64 0.00 0.00 3.53
235 236 7.994425 TGTGCTAGAACTTTGAAAATATGGA 57.006 32.000 1.64 0.00 0.00 3.41
236 237 9.132521 CTTTGTGCTAGAACTTTGAAAATATGG 57.867 33.333 1.64 0.00 0.00 2.74
237 238 8.642020 GCTTTGTGCTAGAACTTTGAAAATATG 58.358 33.333 1.64 0.00 38.95 1.78
238 239 8.748380 GCTTTGTGCTAGAACTTTGAAAATAT 57.252 30.769 1.64 0.00 38.95 1.28
255 256 3.103738 CGCTTGATATTCAGCTTTGTGC 58.896 45.455 5.75 0.00 43.29 4.57
256 257 3.103738 GCGCTTGATATTCAGCTTTGTG 58.896 45.455 0.00 0.00 0.00 3.33
257 258 2.749076 TGCGCTTGATATTCAGCTTTGT 59.251 40.909 9.73 0.00 0.00 2.83
258 259 3.409851 TGCGCTTGATATTCAGCTTTG 57.590 42.857 9.73 0.00 0.00 2.77
259 260 3.691118 TCTTGCGCTTGATATTCAGCTTT 59.309 39.130 9.73 0.00 0.00 3.51
260 261 3.064545 GTCTTGCGCTTGATATTCAGCTT 59.935 43.478 9.73 0.00 0.00 3.74
261 262 2.611292 GTCTTGCGCTTGATATTCAGCT 59.389 45.455 9.73 0.00 0.00 4.24
262 263 2.286654 GGTCTTGCGCTTGATATTCAGC 60.287 50.000 9.73 0.00 0.00 4.26
263 264 3.201290 AGGTCTTGCGCTTGATATTCAG 58.799 45.455 9.73 0.00 0.00 3.02
264 265 3.118629 AGAGGTCTTGCGCTTGATATTCA 60.119 43.478 9.73 0.00 0.00 2.57
265 266 3.462021 AGAGGTCTTGCGCTTGATATTC 58.538 45.455 9.73 6.28 0.00 1.75
266 267 3.550437 AGAGGTCTTGCGCTTGATATT 57.450 42.857 9.73 0.00 0.00 1.28
267 268 4.881019 ATAGAGGTCTTGCGCTTGATAT 57.119 40.909 9.73 0.00 0.00 1.63
268 269 4.672587 AATAGAGGTCTTGCGCTTGATA 57.327 40.909 9.73 0.00 0.00 2.15
269 270 3.550437 AATAGAGGTCTTGCGCTTGAT 57.450 42.857 9.73 0.00 0.00 2.57
270 271 4.672587 ATAATAGAGGTCTTGCGCTTGA 57.327 40.909 9.73 3.56 0.00 3.02
271 272 6.257849 TGTTAATAATAGAGGTCTTGCGCTTG 59.742 38.462 9.73 0.65 0.00 4.01
272 273 6.346096 TGTTAATAATAGAGGTCTTGCGCTT 58.654 36.000 9.73 0.00 0.00 4.68
273 274 5.914033 TGTTAATAATAGAGGTCTTGCGCT 58.086 37.500 9.73 0.00 0.00 5.92
274 275 6.787085 ATGTTAATAATAGAGGTCTTGCGC 57.213 37.500 0.00 0.00 0.00 6.09
295 296 6.516718 ACCATTATCTCGACTCCTGTTTATG 58.483 40.000 0.00 0.00 0.00 1.90
296 297 6.323996 TGACCATTATCTCGACTCCTGTTTAT 59.676 38.462 0.00 0.00 0.00 1.40
310 311 2.289320 GGAGCGCATCTGACCATTATCT 60.289 50.000 11.47 0.00 0.00 1.98
318 319 0.671781 AACAGTGGAGCGCATCTGAC 60.672 55.000 21.17 12.01 0.00 3.51
322 323 1.975363 GCTGAACAGTGGAGCGCATC 61.975 60.000 11.47 4.01 0.00 3.91
327 328 0.952984 GTGGAGCTGAACAGTGGAGC 60.953 60.000 0.00 0.00 0.00 4.70
335 336 0.308993 GCACTTGTGTGGAGCTGAAC 59.691 55.000 0.00 0.00 43.97 3.18
363 364 2.266055 GCTTGCACTCCTACCGCT 59.734 61.111 0.00 0.00 0.00 5.52
364 365 2.103042 CAGCTTGCACTCCTACCGC 61.103 63.158 0.00 0.00 0.00 5.68
365 366 0.176680 ATCAGCTTGCACTCCTACCG 59.823 55.000 0.00 0.00 0.00 4.02
366 367 2.284190 GAATCAGCTTGCACTCCTACC 58.716 52.381 0.00 0.00 0.00 3.18
367 368 2.977914 TGAATCAGCTTGCACTCCTAC 58.022 47.619 0.00 0.00 0.00 3.18
368 369 3.198417 TGATGAATCAGCTTGCACTCCTA 59.802 43.478 0.00 0.00 32.11 2.94
454 456 9.326489 AGAGAAAGGGCTAGGATTTTTATTTTT 57.674 29.630 0.00 0.00 0.00 1.94
455 457 8.901472 AGAGAAAGGGCTAGGATTTTTATTTT 57.099 30.769 0.00 0.00 0.00 1.82
459 465 7.184022 AGGTAAGAGAAAGGGCTAGGATTTTTA 59.816 37.037 0.00 0.00 0.00 1.52
565 571 0.398318 ACCTTCTTCTTTCCGCTGCT 59.602 50.000 0.00 0.00 0.00 4.24
566 572 0.519077 CACCTTCTTCTTTCCGCTGC 59.481 55.000 0.00 0.00 0.00 5.25
604 614 3.007473 TCTTTTTCACCTTTCACCGGT 57.993 42.857 0.00 0.00 34.38 5.28
605 615 3.243401 CCTTCTTTTTCACCTTTCACCGG 60.243 47.826 0.00 0.00 0.00 5.28
606 616 3.630312 TCCTTCTTTTTCACCTTTCACCG 59.370 43.478 0.00 0.00 0.00 4.94
607 617 5.592104 TTCCTTCTTTTTCACCTTTCACC 57.408 39.130 0.00 0.00 0.00 4.02
608 618 6.042777 CCTTTCCTTCTTTTTCACCTTTCAC 58.957 40.000 0.00 0.00 0.00 3.18
609 619 5.395214 GCCTTTCCTTCTTTTTCACCTTTCA 60.395 40.000 0.00 0.00 0.00 2.69
610 620 5.050490 GCCTTTCCTTCTTTTTCACCTTTC 58.950 41.667 0.00 0.00 0.00 2.62
611 621 4.441495 CGCCTTTCCTTCTTTTTCACCTTT 60.441 41.667 0.00 0.00 0.00 3.11
612 622 3.068165 CGCCTTTCCTTCTTTTTCACCTT 59.932 43.478 0.00 0.00 0.00 3.50
613 623 2.623416 CGCCTTTCCTTCTTTTTCACCT 59.377 45.455 0.00 0.00 0.00 4.00
688 698 1.214062 GGGAGCGTGAGTGAGTGAG 59.786 63.158 0.00 0.00 0.00 3.51
689 699 0.900182 ATGGGAGCGTGAGTGAGTGA 60.900 55.000 0.00 0.00 0.00 3.41
690 700 0.459237 GATGGGAGCGTGAGTGAGTG 60.459 60.000 0.00 0.00 0.00 3.51
691 701 1.608717 GGATGGGAGCGTGAGTGAGT 61.609 60.000 0.00 0.00 0.00 3.41
692 702 1.142748 GGATGGGAGCGTGAGTGAG 59.857 63.158 0.00 0.00 0.00 3.51
697 707 2.910360 CATGGGATGGGAGCGTGA 59.090 61.111 0.00 0.00 0.00 4.35
732 742 1.526917 CACGGGAGGAATCCATGGC 60.527 63.158 6.96 0.00 0.00 4.40
779 795 1.606313 GGTTGATGGGTGTGGGTGG 60.606 63.158 0.00 0.00 0.00 4.61
792 814 2.308866 GAGAGGAAGGAATTGGGGTTGA 59.691 50.000 0.00 0.00 0.00 3.18
848 870 2.997899 GCGTCTAGCCGTCTAGGTA 58.002 57.895 0.00 0.00 42.01 3.08
933 1007 6.183360 CCAATTAATTCACCTGCAGATTGCTA 60.183 38.462 17.39 4.09 45.31 3.49
953 1027 3.091545 CTGGTGATGTTAGTGCCCAATT 58.908 45.455 0.00 0.00 0.00 2.32
954 1028 2.726821 CTGGTGATGTTAGTGCCCAAT 58.273 47.619 0.00 0.00 0.00 3.16
955 1029 1.886222 GCTGGTGATGTTAGTGCCCAA 60.886 52.381 0.00 0.00 0.00 4.12
956 1030 0.322456 GCTGGTGATGTTAGTGCCCA 60.322 55.000 0.00 0.00 0.00 5.36
968 1044 3.753815 TCACTTGATTTGATGCTGGTGA 58.246 40.909 0.00 0.00 0.00 4.02
971 1047 3.349927 TCCTCACTTGATTTGATGCTGG 58.650 45.455 0.00 0.00 0.00 4.85
1204 1286 1.266175 AGTCAGTCACAGTAACGGTCG 59.734 52.381 0.00 0.00 0.00 4.79
1205 1287 2.292569 TCAGTCAGTCACAGTAACGGTC 59.707 50.000 0.00 0.00 0.00 4.79
1206 1288 2.034305 GTCAGTCAGTCACAGTAACGGT 59.966 50.000 0.00 0.00 0.00 4.83
1207 1289 2.293677 AGTCAGTCAGTCACAGTAACGG 59.706 50.000 0.00 0.00 0.00 4.44
1208 1290 3.003378 TCAGTCAGTCAGTCACAGTAACG 59.997 47.826 0.00 0.00 0.00 3.18
1209 1291 4.036971 AGTCAGTCAGTCAGTCACAGTAAC 59.963 45.833 0.00 0.00 0.00 2.50
1210 1292 4.036852 CAGTCAGTCAGTCAGTCACAGTAA 59.963 45.833 0.00 0.00 0.00 2.24
1211 1293 3.565902 CAGTCAGTCAGTCAGTCACAGTA 59.434 47.826 0.00 0.00 0.00 2.74
1212 1294 2.360483 CAGTCAGTCAGTCAGTCACAGT 59.640 50.000 0.00 0.00 0.00 3.55
1213 1295 2.620585 TCAGTCAGTCAGTCAGTCACAG 59.379 50.000 0.00 0.00 0.00 3.66
1214 1296 2.359214 GTCAGTCAGTCAGTCAGTCACA 59.641 50.000 0.00 0.00 0.00 3.58
1218 1300 1.959985 CCAGTCAGTCAGTCAGTCAGT 59.040 52.381 0.00 0.00 0.00 3.41
1219 1301 1.959985 ACCAGTCAGTCAGTCAGTCAG 59.040 52.381 0.00 0.00 0.00 3.51
1220 1302 1.683385 CACCAGTCAGTCAGTCAGTCA 59.317 52.381 0.00 0.00 0.00 3.41
1221 1303 1.604185 GCACCAGTCAGTCAGTCAGTC 60.604 57.143 0.00 0.00 0.00 3.51
1222 1304 0.390860 GCACCAGTCAGTCAGTCAGT 59.609 55.000 0.00 0.00 0.00 3.41
1223 1305 0.678395 AGCACCAGTCAGTCAGTCAG 59.322 55.000 0.00 0.00 0.00 3.51
1224 1306 0.390492 CAGCACCAGTCAGTCAGTCA 59.610 55.000 0.00 0.00 0.00 3.41
1225 1307 0.948141 GCAGCACCAGTCAGTCAGTC 60.948 60.000 0.00 0.00 0.00 3.51
1226 1308 1.070445 GCAGCACCAGTCAGTCAGT 59.930 57.895 0.00 0.00 0.00 3.41
1227 1309 1.670406 GGCAGCACCAGTCAGTCAG 60.670 63.158 0.00 0.00 38.86 3.51
1228 1310 2.142761 AGGCAGCACCAGTCAGTCA 61.143 57.895 0.00 0.00 43.14 3.41
1229 1311 1.670406 CAGGCAGCACCAGTCAGTC 60.670 63.158 0.00 0.00 43.14 3.51
1230 1312 2.429058 CAGGCAGCACCAGTCAGT 59.571 61.111 0.00 0.00 43.14 3.41
1231 1313 2.359602 CCAGGCAGCACCAGTCAG 60.360 66.667 0.00 0.00 43.14 3.51
1232 1314 3.957586 CCCAGGCAGCACCAGTCA 61.958 66.667 0.00 0.00 43.14 3.41
1238 1320 2.282745 AAGAAGCCCAGGCAGCAC 60.283 61.111 12.03 0.00 44.88 4.40
1258 1340 4.680237 TTGGACACCTGCGGCGAG 62.680 66.667 12.98 5.11 0.00 5.03
1259 1341 4.980805 GTTGGACACCTGCGGCGA 62.981 66.667 12.98 0.00 0.00 5.54
1260 1342 3.583276 TAGTTGGACACCTGCGGCG 62.583 63.158 0.51 0.51 0.00 6.46
1261 1343 2.033194 GTAGTTGGACACCTGCGGC 61.033 63.158 0.00 0.00 0.00 6.53
1262 1344 1.375523 GGTAGTTGGACACCTGCGG 60.376 63.158 0.00 0.00 0.00 5.69
1263 1345 1.671742 AGGTAGTTGGACACCTGCG 59.328 57.895 0.00 0.00 43.64 5.18
1537 1619 5.163794 CGCTTGAAAGTAATTTCCGTACCAT 60.164 40.000 12.73 0.00 0.00 3.55
1544 1626 2.515912 CGGCGCTTGAAAGTAATTTCC 58.484 47.619 12.73 0.00 0.00 3.13
1545 1627 1.911464 GCGGCGCTTGAAAGTAATTTC 59.089 47.619 26.86 8.68 0.00 2.17
1547 1629 0.179200 CGCGGCGCTTGAAAGTAATT 60.179 50.000 30.54 0.00 0.00 1.40
1556 1638 4.101790 ATGGTTTCGCGGCGCTTG 62.102 61.111 30.54 15.69 0.00 4.01
1561 1643 3.825611 ATGGCATGGTTTCGCGGC 61.826 61.111 6.13 0.00 0.00 6.53
1562 1644 2.102749 CATGGCATGGTTTCGCGG 59.897 61.111 19.80 0.00 0.00 6.46
1563 1645 2.580326 GCATGGCATGGTTTCGCG 60.580 61.111 27.48 0.00 0.00 5.87
1564 1646 2.572812 TGCATGGCATGGTTTCGC 59.427 55.556 27.48 13.38 31.71 4.70
1592 1674 9.354673 CTTATTATTAATCCACACCACCATTCT 57.645 33.333 0.00 0.00 0.00 2.40
1593 1675 9.349713 TCTTATTATTAATCCACACCACCATTC 57.650 33.333 0.00 0.00 0.00 2.67
1594 1676 9.354673 CTCTTATTATTAATCCACACCACCATT 57.645 33.333 0.00 0.00 0.00 3.16
1595 1677 7.448469 GCTCTTATTATTAATCCACACCACCAT 59.552 37.037 0.00 0.00 0.00 3.55
1598 1680 7.282224 TGTGCTCTTATTATTAATCCACACCAC 59.718 37.037 0.00 0.00 0.00 4.16
1610 1692 5.244785 TCGACGAGTGTGCTCTTATTATT 57.755 39.130 0.00 0.00 39.53 1.40
1618 1700 1.517257 CCCATCGACGAGTGTGCTC 60.517 63.158 3.01 0.00 38.35 4.26
1619 1701 2.276116 ACCCATCGACGAGTGTGCT 61.276 57.895 3.01 0.00 0.00 4.40
1620 1702 2.094659 CACCCATCGACGAGTGTGC 61.095 63.158 3.01 0.00 0.00 4.57
1622 1704 2.261671 GCACCCATCGACGAGTGT 59.738 61.111 14.75 4.64 32.75 3.55
1623 1705 1.807165 CTGCACCCATCGACGAGTG 60.807 63.158 3.01 7.51 0.00 3.51
1625 1707 2.021068 ATCCTGCACCCATCGACGAG 62.021 60.000 3.01 0.00 0.00 4.18
1626 1708 1.613317 AATCCTGCACCCATCGACGA 61.613 55.000 0.00 0.00 0.00 4.20
1627 1709 0.744414 AAATCCTGCACCCATCGACG 60.744 55.000 0.00 0.00 0.00 5.12
1628 1710 0.734889 CAAATCCTGCACCCATCGAC 59.265 55.000 0.00 0.00 0.00 4.20
1690 1772 3.374402 CTGACGTGGCCGGACTCT 61.374 66.667 9.82 0.00 38.78 3.24
1905 1987 4.540735 GGACGCCGGGGTATGGTG 62.541 72.222 25.76 0.00 42.74 4.17
1907 1989 4.235762 CTGGACGCCGGGGTATGG 62.236 72.222 25.76 12.93 0.00 2.74
1908 1990 4.910585 GCTGGACGCCGGGGTATG 62.911 72.222 25.76 17.41 0.00 2.39
1918 2000 4.320456 AGGTGGTGCTGCTGGACG 62.320 66.667 9.05 0.00 35.23 4.79
1919 2001 2.670934 CAGGTGGTGCTGCTGGAC 60.671 66.667 6.70 6.70 0.00 4.02
2023 2105 1.228245 GCTGGACTGAACCTGGCAA 60.228 57.895 0.00 0.00 32.92 4.52
2032 2114 2.661537 CACGCGTTGCTGGACTGA 60.662 61.111 10.22 0.00 0.00 3.41
2085 2167 4.476628 CCATTCATTGGCTTAGGCTTTT 57.523 40.909 7.43 0.00 39.09 2.27
2123 2213 1.825090 TTCATTGCGTCAGGCTCATT 58.175 45.000 0.00 0.00 44.05 2.57
2135 2225 3.751621 CTCTTGTTCGACCATTCATTGC 58.248 45.455 0.00 0.00 0.00 3.56
2151 2241 1.128136 CGTGCATTGTCTCTGCTCTTG 59.872 52.381 0.00 0.00 40.34 3.02
2155 2245 2.455674 TTACGTGCATTGTCTCTGCT 57.544 45.000 0.00 0.00 40.34 4.24
2164 2254 5.525199 ACGAAAAGGAATTTTACGTGCATT 58.475 33.333 0.00 0.00 31.66 3.56
2218 2308 9.502091 AGCGAATAATAATCCAATTGCTACTTA 57.498 29.630 0.00 0.00 0.00 2.24
2219 2309 8.292448 CAGCGAATAATAATCCAATTGCTACTT 58.708 33.333 0.00 0.00 0.00 2.24
2220 2310 7.661437 TCAGCGAATAATAATCCAATTGCTACT 59.339 33.333 0.00 0.00 0.00 2.57
2221 2311 7.806690 TCAGCGAATAATAATCCAATTGCTAC 58.193 34.615 0.00 0.00 0.00 3.58
2222 2312 7.977789 TCAGCGAATAATAATCCAATTGCTA 57.022 32.000 0.00 0.00 0.00 3.49
2299 2389 3.431207 GCAGGCCAAATGAACAGCATAAT 60.431 43.478 5.01 0.00 35.78 1.28
2351 2441 8.167605 TCAATTTTGATTTGCATGTTCCAATT 57.832 26.923 0.00 0.00 31.01 2.32
2380 2470 3.063452 TGTCGTTGCTCAGTTTTGTTCTC 59.937 43.478 0.00 0.00 0.00 2.87
2382 2472 3.098636 GTGTCGTTGCTCAGTTTTGTTC 58.901 45.455 0.00 0.00 0.00 3.18
2419 2509 4.556942 TGTCAATGTCAGCTTTCACTTG 57.443 40.909 0.00 0.00 0.00 3.16
2765 2860 2.253452 CCTTGTCGCTGCAGTTGC 59.747 61.111 16.64 0.05 42.50 4.17
2943 3038 0.038166 TGGCAACCCTGATCTGAACC 59.962 55.000 0.38 0.00 0.00 3.62
2992 3087 0.815615 GGGCAACTATGGAAGCTCCG 60.816 60.000 0.00 0.00 40.17 4.63
3049 3144 4.630644 TGAGAAGGCTGTGAAGATTCTT 57.369 40.909 0.00 0.00 30.62 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.