Multiple sequence alignment - TraesCS3B01G202500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G202500 | chr3B | 100.000 | 4797 | 0 | 0 | 1 | 4797 | 236499136 | 236494340 | 0.000000e+00 | 8859.0 |
1 | TraesCS3B01G202500 | chr3B | 95.109 | 184 | 9 | 0 | 4233 | 4416 | 161459629 | 161459446 | 1.690000e-74 | 291.0 |
2 | TraesCS3B01G202500 | chr3D | 95.478 | 4268 | 111 | 36 | 1 | 4212 | 159789507 | 159785266 | 0.000000e+00 | 6737.0 |
3 | TraesCS3B01G202500 | chr3D | 84.108 | 409 | 39 | 5 | 4411 | 4795 | 159785275 | 159784869 | 5.860000e-99 | 372.0 |
4 | TraesCS3B01G202500 | chr3D | 83.978 | 362 | 31 | 9 | 4458 | 4797 | 120104399 | 120104755 | 5.990000e-84 | 322.0 |
5 | TraesCS3B01G202500 | chr3D | 88.384 | 198 | 22 | 1 | 4458 | 4655 | 551004210 | 551004014 | 2.230000e-58 | 237.0 |
6 | TraesCS3B01G202500 | chr3A | 95.418 | 3383 | 99 | 26 | 881 | 4230 | 186042974 | 186039615 | 0.000000e+00 | 5337.0 |
7 | TraesCS3B01G202500 | chr3A | 96.798 | 812 | 24 | 2 | 1 | 811 | 186043914 | 186043104 | 0.000000e+00 | 1354.0 |
8 | TraesCS3B01G202500 | chr3A | 81.694 | 366 | 39 | 10 | 4458 | 4797 | 682009056 | 682009419 | 3.660000e-71 | 279.0 |
9 | TraesCS3B01G202500 | chr3A | 77.976 | 168 | 31 | 5 | 4050 | 4216 | 736946377 | 736946539 | 3.050000e-17 | 100.0 |
10 | TraesCS3B01G202500 | chr3A | 78.947 | 95 | 18 | 2 | 4050 | 4143 | 40161228 | 40161321 | 4.010000e-06 | 63.9 |
11 | TraesCS3B01G202500 | chr4A | 86.359 | 909 | 116 | 7 | 2674 | 3578 | 900639 | 901543 | 0.000000e+00 | 985.0 |
12 | TraesCS3B01G202500 | chr4D | 80.742 | 1293 | 202 | 32 | 2316 | 3577 | 629733 | 631009 | 0.000000e+00 | 965.0 |
13 | TraesCS3B01G202500 | chr4D | 73.767 | 953 | 227 | 21 | 1237 | 2179 | 628615 | 629554 | 2.120000e-93 | 353.0 |
14 | TraesCS3B01G202500 | chr4D | 81.818 | 363 | 39 | 12 | 4458 | 4797 | 498691631 | 498691273 | 3.660000e-71 | 279.0 |
15 | TraesCS3B01G202500 | chr4B | 85.557 | 907 | 122 | 7 | 2674 | 3577 | 1244614 | 1243714 | 0.000000e+00 | 941.0 |
16 | TraesCS3B01G202500 | chr4B | 73.849 | 956 | 221 | 24 | 1237 | 2179 | 1246105 | 1245166 | 2.120000e-93 | 353.0 |
17 | TraesCS3B01G202500 | chr4B | 96.685 | 181 | 6 | 0 | 4231 | 4411 | 666660338 | 666660158 | 7.800000e-78 | 302.0 |
18 | TraesCS3B01G202500 | chr4B | 96.133 | 181 | 5 | 1 | 4231 | 4411 | 666696962 | 666696784 | 1.310000e-75 | 294.0 |
19 | TraesCS3B01G202500 | chr4B | 80.541 | 370 | 37 | 15 | 4459 | 4797 | 595302156 | 595302521 | 7.970000e-63 | 252.0 |
20 | TraesCS3B01G202500 | chr4B | 79.019 | 367 | 38 | 14 | 4456 | 4797 | 449195692 | 449195340 | 1.050000e-51 | 215.0 |
21 | TraesCS3B01G202500 | chr5D | 81.747 | 893 | 145 | 17 | 2682 | 3568 | 425840488 | 425841368 | 0.000000e+00 | 730.0 |
22 | TraesCS3B01G202500 | chr5D | 81.200 | 883 | 137 | 18 | 2698 | 3564 | 454977930 | 454978799 | 0.000000e+00 | 684.0 |
23 | TraesCS3B01G202500 | chr5D | 81.200 | 883 | 137 | 18 | 2698 | 3564 | 455049178 | 455050047 | 0.000000e+00 | 684.0 |
24 | TraesCS3B01G202500 | chr5D | 80.909 | 880 | 139 | 18 | 2698 | 3561 | 455221896 | 455222762 | 0.000000e+00 | 667.0 |
25 | TraesCS3B01G202500 | chr5D | 80.990 | 768 | 122 | 15 | 2809 | 3564 | 455121047 | 455121802 | 5.350000e-164 | 588.0 |
26 | TraesCS3B01G202500 | chr5D | 81.944 | 360 | 33 | 11 | 4460 | 4797 | 73814418 | 73814069 | 4.730000e-70 | 276.0 |
27 | TraesCS3B01G202500 | chr5A | 81.594 | 891 | 150 | 13 | 2682 | 3568 | 540053546 | 540054426 | 0.000000e+00 | 725.0 |
28 | TraesCS3B01G202500 | chr5A | 82.105 | 95 | 15 | 2 | 4050 | 4143 | 616368585 | 616368678 | 3.980000e-11 | 80.5 |
29 | TraesCS3B01G202500 | chr5A | 79.070 | 129 | 9 | 7 | 4024 | 4143 | 546142411 | 546142292 | 6.660000e-09 | 73.1 |
30 | TraesCS3B01G202500 | chr5B | 81.236 | 890 | 155 | 11 | 2682 | 3568 | 515185659 | 515186539 | 0.000000e+00 | 708.0 |
31 | TraesCS3B01G202500 | chr5B | 96.629 | 178 | 4 | 1 | 4231 | 4408 | 532890293 | 532890468 | 1.310000e-75 | 294.0 |
32 | TraesCS3B01G202500 | chr2B | 83.473 | 357 | 37 | 5 | 4462 | 4797 | 790774509 | 790774154 | 3.600000e-81 | 313.0 |
33 | TraesCS3B01G202500 | chr2B | 95.722 | 187 | 7 | 1 | 4226 | 4411 | 64891780 | 64891594 | 2.810000e-77 | 300.0 |
34 | TraesCS3B01G202500 | chr2B | 95.604 | 182 | 7 | 1 | 4230 | 4411 | 170394471 | 170394651 | 1.690000e-74 | 291.0 |
35 | TraesCS3B01G202500 | chr2B | 95.580 | 181 | 7 | 1 | 4231 | 4411 | 405271695 | 405271874 | 6.070000e-74 | 289.0 |
36 | TraesCS3B01G202500 | chr2B | 86.466 | 133 | 13 | 5 | 4050 | 4180 | 701766189 | 701766318 | 1.800000e-29 | 141.0 |
37 | TraesCS3B01G202500 | chr1B | 94.030 | 201 | 9 | 3 | 4220 | 4418 | 583404531 | 583404332 | 7.800000e-78 | 302.0 |
38 | TraesCS3B01G202500 | chr1B | 96.089 | 179 | 7 | 0 | 4231 | 4409 | 580537141 | 580537319 | 4.700000e-75 | 292.0 |
39 | TraesCS3B01G202500 | chr1B | 88.356 | 146 | 16 | 1 | 4652 | 4797 | 354991460 | 354991316 | 1.770000e-39 | 174.0 |
40 | TraesCS3B01G202500 | chr6D | 81.892 | 370 | 35 | 5 | 4459 | 4797 | 65107533 | 65107901 | 2.830000e-72 | 283.0 |
41 | TraesCS3B01G202500 | chr7D | 81.492 | 362 | 41 | 8 | 4460 | 4797 | 461392218 | 461391859 | 1.700000e-69 | 274.0 |
42 | TraesCS3B01G202500 | chr7D | 88.000 | 200 | 23 | 1 | 4457 | 4655 | 369779771 | 369779572 | 8.030000e-58 | 235.0 |
43 | TraesCS3B01G202500 | chr6B | 80.769 | 364 | 44 | 6 | 4459 | 4797 | 514660423 | 514660061 | 1.320000e-65 | 261.0 |
44 | TraesCS3B01G202500 | chr6B | 79.211 | 380 | 45 | 14 | 4446 | 4795 | 159697914 | 159697539 | 2.890000e-57 | 233.0 |
45 | TraesCS3B01G202500 | chr1D | 90.395 | 177 | 17 | 0 | 4460 | 4636 | 27696031 | 27696207 | 2.890000e-57 | 233.0 |
46 | TraesCS3B01G202500 | chr1D | 82.812 | 256 | 25 | 7 | 4561 | 4797 | 267759654 | 267759909 | 1.350000e-50 | 211.0 |
47 | TraesCS3B01G202500 | chr2D | 85.294 | 136 | 15 | 5 | 4050 | 4183 | 582711673 | 582711805 | 8.370000e-28 | 135.0 |
48 | TraesCS3B01G202500 | chr6A | 84.211 | 95 | 13 | 2 | 4050 | 4143 | 407158114 | 407158207 | 1.840000e-14 | 91.6 |
49 | TraesCS3B01G202500 | chr7B | 89.286 | 56 | 5 | 1 | 4050 | 4104 | 530460654 | 530460709 | 8.610000e-08 | 69.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G202500 | chr3B | 236494340 | 236499136 | 4796 | True | 8859.0 | 8859 | 100.0000 | 1 | 4797 | 1 | chr3B.!!$R2 | 4796 |
1 | TraesCS3B01G202500 | chr3D | 159784869 | 159789507 | 4638 | True | 3554.5 | 6737 | 89.7930 | 1 | 4795 | 2 | chr3D.!!$R2 | 4794 |
2 | TraesCS3B01G202500 | chr3A | 186039615 | 186043914 | 4299 | True | 3345.5 | 5337 | 96.1080 | 1 | 4230 | 2 | chr3A.!!$R1 | 4229 |
3 | TraesCS3B01G202500 | chr4A | 900639 | 901543 | 904 | False | 985.0 | 985 | 86.3590 | 2674 | 3578 | 1 | chr4A.!!$F1 | 904 |
4 | TraesCS3B01G202500 | chr4D | 628615 | 631009 | 2394 | False | 659.0 | 965 | 77.2545 | 1237 | 3577 | 2 | chr4D.!!$F1 | 2340 |
5 | TraesCS3B01G202500 | chr4B | 1243714 | 1246105 | 2391 | True | 647.0 | 941 | 79.7030 | 1237 | 3577 | 2 | chr4B.!!$R4 | 2340 |
6 | TraesCS3B01G202500 | chr5D | 425840488 | 425841368 | 880 | False | 730.0 | 730 | 81.7470 | 2682 | 3568 | 1 | chr5D.!!$F1 | 886 |
7 | TraesCS3B01G202500 | chr5D | 454977930 | 454978799 | 869 | False | 684.0 | 684 | 81.2000 | 2698 | 3564 | 1 | chr5D.!!$F2 | 866 |
8 | TraesCS3B01G202500 | chr5D | 455049178 | 455050047 | 869 | False | 684.0 | 684 | 81.2000 | 2698 | 3564 | 1 | chr5D.!!$F3 | 866 |
9 | TraesCS3B01G202500 | chr5D | 455221896 | 455222762 | 866 | False | 667.0 | 667 | 80.9090 | 2698 | 3561 | 1 | chr5D.!!$F5 | 863 |
10 | TraesCS3B01G202500 | chr5D | 455121047 | 455121802 | 755 | False | 588.0 | 588 | 80.9900 | 2809 | 3564 | 1 | chr5D.!!$F4 | 755 |
11 | TraesCS3B01G202500 | chr5A | 540053546 | 540054426 | 880 | False | 725.0 | 725 | 81.5940 | 2682 | 3568 | 1 | chr5A.!!$F1 | 886 |
12 | TraesCS3B01G202500 | chr5B | 515185659 | 515186539 | 880 | False | 708.0 | 708 | 81.2360 | 2682 | 3568 | 1 | chr5B.!!$F1 | 886 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
944 | 1030 | 0.108963 | TCGACGTGGGGGATTTTTGT | 59.891 | 50.000 | 0.0 | 0.0 | 0.00 | 2.83 | F |
945 | 1031 | 0.955905 | CGACGTGGGGGATTTTTGTT | 59.044 | 50.000 | 0.0 | 0.0 | 0.00 | 2.83 | F |
2251 | 2391 | 2.034879 | CAAGGACTTCGCCGTGCAT | 61.035 | 57.895 | 0.0 | 0.0 | 30.94 | 3.96 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2843 | 3019 | 1.825474 | GATCTCCGTCTGGAACTCCAA | 59.175 | 52.381 | 0.00 | 0.00 | 46.97 | 3.53 | R |
3187 | 3369 | 4.235762 | ACGTGCGCCTGGTTCACT | 62.236 | 61.111 | 4.18 | 3.98 | 0.00 | 3.41 | R |
4353 | 4562 | 0.242825 | CACGCTCCTTCCGTCTAACA | 59.757 | 55.000 | 0.00 | 0.00 | 36.69 | 2.41 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
48 | 49 | 5.277974 | CCTTGTCCACAACACTGACAATTAG | 60.278 | 44.000 | 4.93 | 0.00 | 45.10 | 1.73 |
141 | 143 | 9.556030 | TTTGCGTATCTATAGAACTGATTATCG | 57.444 | 33.333 | 6.52 | 2.51 | 0.00 | 2.92 |
223 | 228 | 2.357517 | CCACAGACACGGCCAGTC | 60.358 | 66.667 | 15.65 | 15.65 | 36.26 | 3.51 |
574 | 579 | 4.184629 | CGGTTTTCTCGGAAGATCTTCAT | 58.815 | 43.478 | 31.29 | 0.99 | 41.20 | 2.57 |
642 | 647 | 1.887707 | GCCTCTAACCGCCCATTCG | 60.888 | 63.158 | 0.00 | 0.00 | 0.00 | 3.34 |
669 | 674 | 0.949105 | GTGGTGTTAGTGACCTGGCG | 60.949 | 60.000 | 0.00 | 0.00 | 34.26 | 5.69 |
707 | 712 | 7.232534 | AGCAGTACCTGTAAATTCCATTTTTCA | 59.767 | 33.333 | 0.00 | 0.00 | 33.43 | 2.69 |
763 | 768 | 5.543507 | ACATTTGATGGCTTTGTACCAAA | 57.456 | 34.783 | 0.00 | 0.00 | 41.49 | 3.28 |
838 | 884 | 4.574599 | ACTTTGAGTTGCAACAGGAATC | 57.425 | 40.909 | 30.11 | 18.69 | 35.91 | 2.52 |
839 | 885 | 3.953612 | ACTTTGAGTTGCAACAGGAATCA | 59.046 | 39.130 | 30.11 | 20.95 | 35.91 | 2.57 |
840 | 886 | 4.402155 | ACTTTGAGTTGCAACAGGAATCAA | 59.598 | 37.500 | 30.11 | 24.88 | 35.91 | 2.57 |
884 | 930 | 1.152777 | TGTTGCCTGTGTGGGGAAG | 60.153 | 57.895 | 0.00 | 0.00 | 37.37 | 3.46 |
941 | 1027 | 1.002990 | GGTCGACGTGGGGGATTTT | 60.003 | 57.895 | 9.92 | 0.00 | 0.00 | 1.82 |
942 | 1028 | 0.607217 | GGTCGACGTGGGGGATTTTT | 60.607 | 55.000 | 9.92 | 0.00 | 0.00 | 1.94 |
943 | 1029 | 0.519961 | GTCGACGTGGGGGATTTTTG | 59.480 | 55.000 | 0.00 | 0.00 | 0.00 | 2.44 |
944 | 1030 | 0.108963 | TCGACGTGGGGGATTTTTGT | 59.891 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
945 | 1031 | 0.955905 | CGACGTGGGGGATTTTTGTT | 59.044 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1038 | 1131 | 3.249189 | GCTCCCACTCCCCACACA | 61.249 | 66.667 | 0.00 | 0.00 | 0.00 | 3.72 |
1189 | 1287 | 2.807045 | CTGCTCGCGCTTCTCGTT | 60.807 | 61.111 | 5.56 | 0.00 | 41.07 | 3.85 |
1975 | 2079 | 2.203877 | AAGTACCCCACCGAGGCA | 60.204 | 61.111 | 0.00 | 0.00 | 35.39 | 4.75 |
1978 | 2082 | 2.064581 | GTACCCCACCGAGGCATCT | 61.065 | 63.158 | 0.00 | 0.00 | 35.39 | 2.90 |
2251 | 2391 | 2.034879 | CAAGGACTTCGCCGTGCAT | 61.035 | 57.895 | 0.00 | 0.00 | 30.94 | 3.96 |
2450 | 2596 | 2.507324 | GCGACAGCGAGAAGGACC | 60.507 | 66.667 | 0.00 | 0.00 | 40.82 | 4.46 |
2551 | 2697 | 4.830765 | GCGGCCATCTGCGTGGTA | 62.831 | 66.667 | 2.24 | 0.00 | 41.47 | 3.25 |
2659 | 2817 | 2.283388 | AAGTCGTCCGGCCACCTA | 60.283 | 61.111 | 2.24 | 0.00 | 0.00 | 3.08 |
3187 | 3369 | 2.915659 | AAGTCCGGCTCGTCCACA | 60.916 | 61.111 | 0.00 | 0.00 | 34.01 | 4.17 |
4006 | 4195 | 5.435820 | AGCTAAGGTACTAGCGAATACAC | 57.564 | 43.478 | 8.11 | 0.00 | 38.49 | 2.90 |
4037 | 4226 | 6.552008 | TCACTGGAATTTAATCAAGGGTCTT | 58.448 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4050 | 4239 | 4.020218 | TCAAGGGTCTTTCTAGGACACATG | 60.020 | 45.833 | 3.18 | 1.70 | 39.36 | 3.21 |
4051 | 4240 | 3.791320 | AGGGTCTTTCTAGGACACATGA | 58.209 | 45.455 | 0.00 | 0.00 | 39.36 | 3.07 |
4052 | 4241 | 3.515901 | AGGGTCTTTCTAGGACACATGAC | 59.484 | 47.826 | 0.00 | 0.00 | 39.36 | 3.06 |
4053 | 4242 | 3.260884 | GGGTCTTTCTAGGACACATGACA | 59.739 | 47.826 | 0.00 | 0.00 | 37.11 | 3.58 |
4054 | 4243 | 4.080863 | GGGTCTTTCTAGGACACATGACAT | 60.081 | 45.833 | 0.00 | 0.00 | 37.11 | 3.06 |
4055 | 4244 | 5.128827 | GGGTCTTTCTAGGACACATGACATA | 59.871 | 44.000 | 0.00 | 0.00 | 37.11 | 2.29 |
4056 | 4245 | 6.351881 | GGGTCTTTCTAGGACACATGACATAA | 60.352 | 42.308 | 0.00 | 0.00 | 37.11 | 1.90 |
4057 | 4246 | 7.275920 | GGTCTTTCTAGGACACATGACATAAT | 58.724 | 38.462 | 0.00 | 0.00 | 35.61 | 1.28 |
4058 | 4247 | 7.770897 | GGTCTTTCTAGGACACATGACATAATT | 59.229 | 37.037 | 0.00 | 0.00 | 35.61 | 1.40 |
4059 | 4248 | 9.817809 | GTCTTTCTAGGACACATGACATAATTA | 57.182 | 33.333 | 0.00 | 0.00 | 34.23 | 1.40 |
4093 | 4302 | 2.317530 | TGACGTCACCATGTTTGTGA | 57.682 | 45.000 | 15.76 | 0.00 | 40.28 | 3.58 |
4114 | 4323 | 1.757118 | CCCTCCTGATCGCTCTGTTTA | 59.243 | 52.381 | 0.00 | 0.00 | 0.00 | 2.01 |
4181 | 4390 | 4.441792 | GGCACTCATCCTTTTTGTTTGTT | 58.558 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
4220 | 4429 | 4.693915 | CCCTCCCCCTCCCCAACA | 62.694 | 72.222 | 0.00 | 0.00 | 0.00 | 3.33 |
4222 | 4431 | 3.339093 | CTCCCCCTCCCCAACACC | 61.339 | 72.222 | 0.00 | 0.00 | 0.00 | 4.16 |
4227 | 4436 | 3.979497 | CCTCCCCAACACCCCCAC | 61.979 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
4228 | 4437 | 3.979497 | CTCCCCAACACCCCCACC | 61.979 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
4240 | 4449 | 4.122149 | CCCACCCCGGCAATGCTA | 62.122 | 66.667 | 4.82 | 0.00 | 0.00 | 3.49 |
4241 | 4450 | 2.828549 | CCACCCCGGCAATGCTAC | 60.829 | 66.667 | 4.82 | 0.00 | 0.00 | 3.58 |
4242 | 4451 | 2.045438 | CACCCCGGCAATGCTACA | 60.045 | 61.111 | 4.82 | 0.00 | 0.00 | 2.74 |
4243 | 4452 | 2.045340 | ACCCCGGCAATGCTACAC | 60.045 | 61.111 | 4.82 | 0.00 | 0.00 | 2.90 |
4244 | 4453 | 3.202001 | CCCCGGCAATGCTACACG | 61.202 | 66.667 | 4.82 | 0.00 | 0.00 | 4.49 |
4245 | 4454 | 2.435938 | CCCGGCAATGCTACACGT | 60.436 | 61.111 | 4.82 | 0.00 | 0.00 | 4.49 |
4246 | 4455 | 1.153529 | CCCGGCAATGCTACACGTA | 60.154 | 57.895 | 4.82 | 0.00 | 0.00 | 3.57 |
4247 | 4456 | 1.426041 | CCCGGCAATGCTACACGTAC | 61.426 | 60.000 | 4.82 | 0.00 | 0.00 | 3.67 |
4248 | 4457 | 0.738063 | CCGGCAATGCTACACGTACA | 60.738 | 55.000 | 4.82 | 0.00 | 0.00 | 2.90 |
4249 | 4458 | 1.072391 | CGGCAATGCTACACGTACAA | 58.928 | 50.000 | 4.82 | 0.00 | 0.00 | 2.41 |
4250 | 4459 | 1.461512 | CGGCAATGCTACACGTACAAA | 59.538 | 47.619 | 4.82 | 0.00 | 0.00 | 2.83 |
4251 | 4460 | 2.723618 | CGGCAATGCTACACGTACAAAC | 60.724 | 50.000 | 4.82 | 0.00 | 0.00 | 2.93 |
4268 | 4477 | 7.771219 | GTACAAACGATTTACAGGCTTTTAC | 57.229 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
4269 | 4478 | 6.380095 | ACAAACGATTTACAGGCTTTTACA | 57.620 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
4270 | 4479 | 6.435428 | ACAAACGATTTACAGGCTTTTACAG | 58.565 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4271 | 4480 | 5.622770 | AACGATTTACAGGCTTTTACAGG | 57.377 | 39.130 | 0.00 | 0.00 | 0.00 | 4.00 |
4272 | 4481 | 4.901868 | ACGATTTACAGGCTTTTACAGGA | 58.098 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
4273 | 4482 | 5.497474 | ACGATTTACAGGCTTTTACAGGAT | 58.503 | 37.500 | 0.00 | 0.00 | 0.00 | 3.24 |
4274 | 4483 | 5.354234 | ACGATTTACAGGCTTTTACAGGATG | 59.646 | 40.000 | 0.00 | 0.00 | 46.00 | 3.51 |
4275 | 4484 | 5.220854 | CGATTTACAGGCTTTTACAGGATGG | 60.221 | 44.000 | 0.00 | 0.00 | 43.62 | 3.51 |
4276 | 4485 | 4.650972 | TTACAGGCTTTTACAGGATGGT | 57.349 | 40.909 | 0.00 | 0.00 | 43.62 | 3.55 |
4277 | 4486 | 3.525800 | ACAGGCTTTTACAGGATGGTT | 57.474 | 42.857 | 0.00 | 0.00 | 43.62 | 3.67 |
4278 | 4487 | 4.650972 | ACAGGCTTTTACAGGATGGTTA | 57.349 | 40.909 | 0.00 | 0.00 | 43.62 | 2.85 |
4279 | 4488 | 4.993028 | ACAGGCTTTTACAGGATGGTTAA | 58.007 | 39.130 | 0.00 | 0.00 | 43.62 | 2.01 |
4280 | 4489 | 5.580022 | ACAGGCTTTTACAGGATGGTTAAT | 58.420 | 37.500 | 0.00 | 0.00 | 43.62 | 1.40 |
4281 | 4490 | 5.652452 | ACAGGCTTTTACAGGATGGTTAATC | 59.348 | 40.000 | 0.00 | 0.00 | 43.62 | 1.75 |
4282 | 4491 | 5.888161 | CAGGCTTTTACAGGATGGTTAATCT | 59.112 | 40.000 | 0.00 | 0.00 | 43.62 | 2.40 |
4283 | 4492 | 6.378280 | CAGGCTTTTACAGGATGGTTAATCTT | 59.622 | 38.462 | 0.00 | 0.00 | 43.62 | 2.40 |
4284 | 4493 | 6.378280 | AGGCTTTTACAGGATGGTTAATCTTG | 59.622 | 38.462 | 0.00 | 0.00 | 45.55 | 3.02 |
4285 | 4494 | 6.377146 | GGCTTTTACAGGATGGTTAATCTTGA | 59.623 | 38.462 | 4.67 | 0.00 | 43.40 | 3.02 |
4286 | 4495 | 7.068716 | GGCTTTTACAGGATGGTTAATCTTGAT | 59.931 | 37.037 | 4.67 | 0.00 | 43.40 | 2.57 |
4287 | 4496 | 8.470002 | GCTTTTACAGGATGGTTAATCTTGATT | 58.530 | 33.333 | 4.67 | 1.35 | 43.40 | 2.57 |
4288 | 4497 | 9.793252 | CTTTTACAGGATGGTTAATCTTGATTG | 57.207 | 33.333 | 6.15 | 0.00 | 43.40 | 2.67 |
4289 | 4498 | 7.880160 | TTACAGGATGGTTAATCTTGATTGG | 57.120 | 36.000 | 6.15 | 0.00 | 43.40 | 3.16 |
4290 | 4499 | 5.831103 | ACAGGATGGTTAATCTTGATTGGT | 58.169 | 37.500 | 6.15 | 0.00 | 43.40 | 3.67 |
4291 | 4500 | 5.888161 | ACAGGATGGTTAATCTTGATTGGTC | 59.112 | 40.000 | 6.15 | 0.00 | 43.40 | 4.02 |
4292 | 4501 | 5.887598 | CAGGATGGTTAATCTTGATTGGTCA | 59.112 | 40.000 | 6.15 | 2.60 | 43.40 | 4.02 |
4293 | 4502 | 6.377996 | CAGGATGGTTAATCTTGATTGGTCAA | 59.622 | 38.462 | 6.15 | 0.00 | 43.40 | 3.18 |
4294 | 4503 | 7.069085 | CAGGATGGTTAATCTTGATTGGTCAAT | 59.931 | 37.037 | 6.15 | 0.00 | 43.40 | 2.57 |
4295 | 4504 | 8.281531 | AGGATGGTTAATCTTGATTGGTCAATA | 58.718 | 33.333 | 6.15 | 0.00 | 43.08 | 1.90 |
4296 | 4505 | 8.571336 | GGATGGTTAATCTTGATTGGTCAATAG | 58.429 | 37.037 | 6.15 | 0.00 | 43.08 | 1.73 |
4297 | 4506 | 7.880160 | TGGTTAATCTTGATTGGTCAATAGG | 57.120 | 36.000 | 6.15 | 0.00 | 43.08 | 2.57 |
4298 | 4507 | 7.410174 | TGGTTAATCTTGATTGGTCAATAGGT | 58.590 | 34.615 | 6.15 | 0.00 | 43.08 | 3.08 |
4299 | 4508 | 7.339212 | TGGTTAATCTTGATTGGTCAATAGGTG | 59.661 | 37.037 | 6.15 | 0.00 | 43.08 | 4.00 |
4300 | 4509 | 7.556275 | GGTTAATCTTGATTGGTCAATAGGTGA | 59.444 | 37.037 | 6.15 | 0.00 | 43.08 | 4.02 |
4301 | 4510 | 8.616076 | GTTAATCTTGATTGGTCAATAGGTGAG | 58.384 | 37.037 | 6.15 | 0.00 | 43.08 | 3.51 |
4305 | 4514 | 4.857251 | GGTCAATAGGTGAGCGGG | 57.143 | 61.111 | 0.00 | 0.00 | 44.38 | 6.13 |
4306 | 4515 | 1.146263 | GGTCAATAGGTGAGCGGGG | 59.854 | 63.158 | 0.00 | 0.00 | 44.38 | 5.73 |
4307 | 4516 | 1.523938 | GTCAATAGGTGAGCGGGGC | 60.524 | 63.158 | 0.00 | 0.00 | 36.74 | 5.80 |
4308 | 4517 | 2.588877 | CAATAGGTGAGCGGGGCG | 60.589 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
4309 | 4518 | 3.861797 | AATAGGTGAGCGGGGCGG | 61.862 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
4340 | 4549 | 4.935352 | CTGTAAATCAGGAGAGGAGAGG | 57.065 | 50.000 | 0.00 | 0.00 | 40.23 | 3.69 |
4341 | 4550 | 4.285863 | CTGTAAATCAGGAGAGGAGAGGT | 58.714 | 47.826 | 0.00 | 0.00 | 40.23 | 3.85 |
4342 | 4551 | 4.689062 | TGTAAATCAGGAGAGGAGAGGTT | 58.311 | 43.478 | 0.00 | 0.00 | 0.00 | 3.50 |
4343 | 4552 | 5.094387 | TGTAAATCAGGAGAGGAGAGGTTT | 58.906 | 41.667 | 0.00 | 0.00 | 0.00 | 3.27 |
4344 | 4553 | 4.566426 | AAATCAGGAGAGGAGAGGTTTG | 57.434 | 45.455 | 0.00 | 0.00 | 0.00 | 2.93 |
4345 | 4554 | 2.704190 | TCAGGAGAGGAGAGGTTTGT | 57.296 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
4346 | 4555 | 2.251818 | TCAGGAGAGGAGAGGTTTGTG | 58.748 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
4347 | 4556 | 2.158310 | TCAGGAGAGGAGAGGTTTGTGA | 60.158 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
4348 | 4557 | 2.836981 | CAGGAGAGGAGAGGTTTGTGAT | 59.163 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
4349 | 4558 | 3.262915 | CAGGAGAGGAGAGGTTTGTGATT | 59.737 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
4350 | 4559 | 3.262915 | AGGAGAGGAGAGGTTTGTGATTG | 59.737 | 47.826 | 0.00 | 0.00 | 0.00 | 2.67 |
4351 | 4560 | 3.604582 | GAGAGGAGAGGTTTGTGATTGG | 58.395 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4352 | 4561 | 2.982488 | AGAGGAGAGGTTTGTGATTGGT | 59.018 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
4353 | 4562 | 3.395941 | AGAGGAGAGGTTTGTGATTGGTT | 59.604 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
4354 | 4563 | 3.490348 | AGGAGAGGTTTGTGATTGGTTG | 58.510 | 45.455 | 0.00 | 0.00 | 0.00 | 3.77 |
4355 | 4564 | 3.117512 | AGGAGAGGTTTGTGATTGGTTGT | 60.118 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
4356 | 4565 | 3.636764 | GGAGAGGTTTGTGATTGGTTGTT | 59.363 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
4357 | 4566 | 4.825085 | GGAGAGGTTTGTGATTGGTTGTTA | 59.175 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
4358 | 4567 | 5.048713 | GGAGAGGTTTGTGATTGGTTGTTAG | 60.049 | 44.000 | 0.00 | 0.00 | 0.00 | 2.34 |
4359 | 4568 | 5.690865 | AGAGGTTTGTGATTGGTTGTTAGA | 58.309 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
4360 | 4569 | 5.531287 | AGAGGTTTGTGATTGGTTGTTAGAC | 59.469 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4361 | 4570 | 4.274950 | AGGTTTGTGATTGGTTGTTAGACG | 59.725 | 41.667 | 0.00 | 0.00 | 0.00 | 4.18 |
4362 | 4571 | 4.533222 | GTTTGTGATTGGTTGTTAGACGG | 58.467 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
4363 | 4572 | 3.755112 | TGTGATTGGTTGTTAGACGGA | 57.245 | 42.857 | 0.00 | 0.00 | 0.00 | 4.69 |
4364 | 4573 | 4.074627 | TGTGATTGGTTGTTAGACGGAA | 57.925 | 40.909 | 0.00 | 0.00 | 0.00 | 4.30 |
4365 | 4574 | 4.062293 | TGTGATTGGTTGTTAGACGGAAG | 58.938 | 43.478 | 0.00 | 0.00 | 0.00 | 3.46 |
4366 | 4575 | 3.435671 | GTGATTGGTTGTTAGACGGAAGG | 59.564 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
4367 | 4576 | 3.325425 | TGATTGGTTGTTAGACGGAAGGA | 59.675 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
4368 | 4577 | 3.396260 | TTGGTTGTTAGACGGAAGGAG | 57.604 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
4369 | 4578 | 1.001633 | TGGTTGTTAGACGGAAGGAGC | 59.998 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
4370 | 4579 | 1.347320 | GTTGTTAGACGGAAGGAGCG | 58.653 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
4371 | 4580 | 0.963962 | TTGTTAGACGGAAGGAGCGT | 59.036 | 50.000 | 0.00 | 0.00 | 0.00 | 5.07 |
4372 | 4581 | 0.242825 | TGTTAGACGGAAGGAGCGTG | 59.757 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
4373 | 4582 | 0.243095 | GTTAGACGGAAGGAGCGTGT | 59.757 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
4374 | 4583 | 1.470098 | GTTAGACGGAAGGAGCGTGTA | 59.530 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
4375 | 4584 | 1.825090 | TAGACGGAAGGAGCGTGTAA | 58.175 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
4376 | 4585 | 0.963962 | AGACGGAAGGAGCGTGTAAA | 59.036 | 50.000 | 0.00 | 0.00 | 0.00 | 2.01 |
4377 | 4586 | 1.342174 | AGACGGAAGGAGCGTGTAAAA | 59.658 | 47.619 | 0.00 | 0.00 | 0.00 | 1.52 |
4378 | 4587 | 1.725164 | GACGGAAGGAGCGTGTAAAAG | 59.275 | 52.381 | 0.00 | 0.00 | 0.00 | 2.27 |
4379 | 4588 | 0.442699 | CGGAAGGAGCGTGTAAAAGC | 59.557 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4380 | 4589 | 0.442699 | GGAAGGAGCGTGTAAAAGCG | 59.557 | 55.000 | 0.00 | 0.00 | 38.61 | 4.68 |
4381 | 4590 | 1.145803 | GAAGGAGCGTGTAAAAGCGT | 58.854 | 50.000 | 0.00 | 0.00 | 38.61 | 5.07 |
4382 | 4591 | 0.865769 | AAGGAGCGTGTAAAAGCGTG | 59.134 | 50.000 | 0.00 | 0.00 | 38.61 | 5.34 |
4383 | 4592 | 0.249741 | AGGAGCGTGTAAAAGCGTGT | 60.250 | 50.000 | 0.00 | 0.00 | 38.61 | 4.49 |
4384 | 4593 | 1.000060 | AGGAGCGTGTAAAAGCGTGTA | 60.000 | 47.619 | 0.00 | 0.00 | 38.61 | 2.90 |
4385 | 4594 | 1.794116 | GGAGCGTGTAAAAGCGTGTAA | 59.206 | 47.619 | 0.00 | 0.00 | 38.61 | 2.41 |
4386 | 4595 | 2.159881 | GGAGCGTGTAAAAGCGTGTAAG | 60.160 | 50.000 | 0.00 | 0.00 | 38.61 | 2.34 |
4387 | 4596 | 2.473984 | GAGCGTGTAAAAGCGTGTAAGT | 59.526 | 45.455 | 0.00 | 0.00 | 38.61 | 2.24 |
4388 | 4597 | 2.473984 | AGCGTGTAAAAGCGTGTAAGTC | 59.526 | 45.455 | 0.00 | 0.00 | 38.61 | 3.01 |
4389 | 4598 | 2.473984 | GCGTGTAAAAGCGTGTAAGTCT | 59.526 | 45.455 | 0.00 | 0.00 | 0.00 | 3.24 |
4390 | 4599 | 3.060070 | GCGTGTAAAAGCGTGTAAGTCTT | 60.060 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
4391 | 4600 | 4.551410 | GCGTGTAAAAGCGTGTAAGTCTTT | 60.551 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
4392 | 4601 | 4.896238 | CGTGTAAAAGCGTGTAAGTCTTTG | 59.104 | 41.667 | 0.00 | 0.00 | 31.21 | 2.77 |
4393 | 4602 | 5.501252 | CGTGTAAAAGCGTGTAAGTCTTTGT | 60.501 | 40.000 | 0.00 | 0.00 | 31.21 | 2.83 |
4394 | 4603 | 6.291743 | CGTGTAAAAGCGTGTAAGTCTTTGTA | 60.292 | 38.462 | 0.00 | 0.00 | 31.21 | 2.41 |
4395 | 4604 | 7.568134 | CGTGTAAAAGCGTGTAAGTCTTTGTAT | 60.568 | 37.037 | 0.00 | 0.00 | 31.21 | 2.29 |
4396 | 4605 | 7.529519 | GTGTAAAAGCGTGTAAGTCTTTGTATG | 59.470 | 37.037 | 0.00 | 0.00 | 31.21 | 2.39 |
4397 | 4606 | 6.613755 | AAAAGCGTGTAAGTCTTTGTATGT | 57.386 | 33.333 | 0.00 | 0.00 | 31.21 | 2.29 |
4398 | 4607 | 5.840940 | AAGCGTGTAAGTCTTTGTATGTC | 57.159 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
4399 | 4608 | 5.135508 | AGCGTGTAAGTCTTTGTATGTCT | 57.864 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
4400 | 4609 | 6.263516 | AGCGTGTAAGTCTTTGTATGTCTA | 57.736 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
4401 | 4610 | 6.323266 | AGCGTGTAAGTCTTTGTATGTCTAG | 58.677 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
4402 | 4611 | 5.004535 | GCGTGTAAGTCTTTGTATGTCTAGC | 59.995 | 44.000 | 0.00 | 0.00 | 0.00 | 3.42 |
4403 | 4612 | 6.090783 | CGTGTAAGTCTTTGTATGTCTAGCA | 58.909 | 40.000 | 0.00 | 0.00 | 0.00 | 3.49 |
4404 | 4613 | 6.752351 | CGTGTAAGTCTTTGTATGTCTAGCAT | 59.248 | 38.462 | 0.00 | 5.25 | 41.42 | 3.79 |
4405 | 4614 | 7.275779 | CGTGTAAGTCTTTGTATGTCTAGCATT | 59.724 | 37.037 | 5.22 | 0.00 | 38.94 | 3.56 |
4406 | 4615 | 8.936864 | GTGTAAGTCTTTGTATGTCTAGCATTT | 58.063 | 33.333 | 5.22 | 0.00 | 38.94 | 2.32 |
4407 | 4616 | 9.502091 | TGTAAGTCTTTGTATGTCTAGCATTTT | 57.498 | 29.630 | 5.22 | 0.00 | 38.94 | 1.82 |
4410 | 4619 | 7.308435 | AGTCTTTGTATGTCTAGCATTTTTGC | 58.692 | 34.615 | 5.22 | 0.00 | 38.94 | 3.68 |
4415 | 4624 | 1.203112 | TGTCTAGCATTTTTGCCCCCA | 60.203 | 47.619 | 0.00 | 0.00 | 34.90 | 4.96 |
4417 | 4626 | 0.536724 | CTAGCATTTTTGCCCCCACC | 59.463 | 55.000 | 0.00 | 0.00 | 34.90 | 4.61 |
4422 | 4631 | 3.783239 | TTTTTGCCCCCACCCCCAG | 62.783 | 63.158 | 0.00 | 0.00 | 0.00 | 4.45 |
4439 | 4648 | 2.037367 | GGAACTTTCCCAGGCCCC | 59.963 | 66.667 | 0.00 | 0.00 | 41.62 | 5.80 |
4479 | 4688 | 4.090057 | GAGCAACTCCAACGCGGC | 62.090 | 66.667 | 12.47 | 0.36 | 33.14 | 6.53 |
4493 | 4702 | 3.192922 | CGGCGACCCATTTCGTCC | 61.193 | 66.667 | 0.00 | 0.00 | 40.60 | 4.79 |
4528 | 4737 | 1.493311 | GTCGGCGCAGACAGAAAAG | 59.507 | 57.895 | 31.48 | 0.22 | 40.65 | 2.27 |
4538 | 4747 | 0.875059 | GACAGAAAAGTCGGCCCAAG | 59.125 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
4560 | 4769 | 3.326109 | CGACCCAAACGGACACAC | 58.674 | 61.111 | 0.00 | 0.00 | 34.64 | 3.82 |
4574 | 4783 | 1.085501 | ACACACGTCCGCTTTTCGTT | 61.086 | 50.000 | 0.00 | 0.00 | 35.62 | 3.85 |
4575 | 4784 | 0.382636 | CACACGTCCGCTTTTCGTTC | 60.383 | 55.000 | 0.00 | 0.00 | 35.62 | 3.95 |
4579 | 4788 | 3.045492 | TCCGCTTTTCGTTCGCCC | 61.045 | 61.111 | 0.00 | 0.00 | 36.19 | 6.13 |
4583 | 4792 | 2.548295 | GCTTTTCGTTCGCCCACCA | 61.548 | 57.895 | 0.00 | 0.00 | 0.00 | 4.17 |
4591 | 4800 | 1.152440 | TTCGCCCACCAACCCATTT | 60.152 | 52.632 | 0.00 | 0.00 | 0.00 | 2.32 |
4638 | 4847 | 4.796231 | GGCGCGGACATGAGACGT | 62.796 | 66.667 | 8.83 | 0.00 | 0.00 | 4.34 |
4640 | 4849 | 1.515519 | GCGCGGACATGAGACGTAA | 60.516 | 57.895 | 8.83 | 0.00 | 0.00 | 3.18 |
4648 | 4857 | 3.678717 | ATGAGACGTAAGCGCGCGT | 62.679 | 57.895 | 32.35 | 26.23 | 44.50 | 6.01 |
4691 | 4921 | 0.552848 | GCCATCCTCTCCCATTCCAA | 59.447 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
4692 | 4922 | 1.063717 | GCCATCCTCTCCCATTCCAAA | 60.064 | 52.381 | 0.00 | 0.00 | 0.00 | 3.28 |
4694 | 4924 | 3.711863 | CCATCCTCTCCCATTCCAAAAA | 58.288 | 45.455 | 0.00 | 0.00 | 0.00 | 1.94 |
4706 | 4936 | 0.747852 | TCCAAAAACAAACCCTCGCC | 59.252 | 50.000 | 0.00 | 0.00 | 0.00 | 5.54 |
4707 | 4937 | 0.249699 | CCAAAAACAAACCCTCGCCC | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
4751 | 4984 | 0.389426 | CATTTTGCCAGTGCCTCTGC | 60.389 | 55.000 | 1.15 | 0.00 | 42.38 | 4.26 |
4778 | 5011 | 3.747976 | GTGCCGCAACATCCACCC | 61.748 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
4779 | 5012 | 3.965258 | TGCCGCAACATCCACCCT | 61.965 | 61.111 | 0.00 | 0.00 | 0.00 | 4.34 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
83 | 85 | 5.156523 | GTTTAATGAACTAGCCTCCTGCGT | 61.157 | 45.833 | 0.00 | 0.00 | 39.08 | 5.24 |
277 | 282 | 6.238484 | CCCTCACAAAATCATCTTTCGGATAC | 60.238 | 42.308 | 0.00 | 0.00 | 32.64 | 2.24 |
463 | 468 | 5.944599 | GGATGAAGTGCCATCAGATTCATAT | 59.055 | 40.000 | 0.00 | 0.00 | 43.49 | 1.78 |
574 | 579 | 1.486310 | CCCCAAGATCATCGACCTTCA | 59.514 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
642 | 647 | 1.071699 | TCACTAACACCACCAGCCTTC | 59.928 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
669 | 674 | 0.179081 | GTACTGCTTCCCGATGACCC | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
707 | 712 | 2.664402 | AGTCTTTTGCAGGTGGTGAT | 57.336 | 45.000 | 0.00 | 0.00 | 0.00 | 3.06 |
763 | 768 | 5.474876 | AGAAACCTCGAGCAAAATCATTTCT | 59.525 | 36.000 | 6.99 | 8.24 | 0.00 | 2.52 |
837 | 883 | 2.159043 | GCTGCAGATAGCTACCACTTGA | 60.159 | 50.000 | 20.43 | 0.00 | 45.94 | 3.02 |
838 | 884 | 2.208431 | GCTGCAGATAGCTACCACTTG | 58.792 | 52.381 | 20.43 | 0.00 | 45.94 | 3.16 |
839 | 885 | 1.833630 | TGCTGCAGATAGCTACCACTT | 59.166 | 47.619 | 20.43 | 0.00 | 45.94 | 3.16 |
840 | 886 | 1.411977 | CTGCTGCAGATAGCTACCACT | 59.588 | 52.381 | 24.88 | 0.00 | 45.94 | 4.00 |
872 | 918 | 1.002868 | CAGAGGCTTCCCCACACAG | 60.003 | 63.158 | 0.00 | 0.00 | 35.39 | 3.66 |
938 | 1024 | 7.264373 | TCCTTTTGCTTTCACAAAACAAAAA | 57.736 | 28.000 | 10.08 | 0.00 | 42.88 | 1.94 |
941 | 1027 | 7.361628 | GGAAATCCTTTTGCTTTCACAAAACAA | 60.362 | 33.333 | 0.00 | 0.00 | 42.88 | 2.83 |
942 | 1028 | 6.093357 | GGAAATCCTTTTGCTTTCACAAAACA | 59.907 | 34.615 | 0.00 | 0.00 | 42.88 | 2.83 |
943 | 1029 | 6.316140 | AGGAAATCCTTTTGCTTTCACAAAAC | 59.684 | 34.615 | 0.00 | 0.00 | 46.09 | 2.43 |
944 | 1030 | 6.315891 | CAGGAAATCCTTTTGCTTTCACAAAA | 59.684 | 34.615 | 0.00 | 2.80 | 46.09 | 2.44 |
945 | 1031 | 5.816777 | CAGGAAATCCTTTTGCTTTCACAAA | 59.183 | 36.000 | 0.00 | 0.00 | 46.09 | 2.83 |
994 | 1087 | 1.530891 | GGAGCCATGGCATGCATCT | 60.531 | 57.895 | 37.18 | 16.13 | 44.88 | 2.90 |
1038 | 1131 | 4.070552 | GGGGCGCTGAAGACGAGT | 62.071 | 66.667 | 7.64 | 0.00 | 0.00 | 4.18 |
1654 | 1752 | 0.249120 | TGAAGGTGACGGCGATGAAT | 59.751 | 50.000 | 16.62 | 0.00 | 0.00 | 2.57 |
1678 | 1776 | 2.358247 | ACGTTGGTCATGGGCGTC | 60.358 | 61.111 | 0.00 | 0.00 | 0.00 | 5.19 |
1738 | 1842 | 1.038130 | CGGGGTCCTCGAAGATGTCT | 61.038 | 60.000 | 4.69 | 0.00 | 33.89 | 3.41 |
1975 | 2079 | 3.537874 | GGGGCGGCGTACTCAGAT | 61.538 | 66.667 | 9.37 | 0.00 | 0.00 | 2.90 |
2450 | 2596 | 2.084546 | GTCCTTGGATTTCTTGGACCG | 58.915 | 52.381 | 0.00 | 0.00 | 40.74 | 4.79 |
2551 | 2697 | 5.353394 | TGTTCTTCTTGTTGTGGTAGACT | 57.647 | 39.130 | 0.00 | 0.00 | 0.00 | 3.24 |
2843 | 3019 | 1.825474 | GATCTCCGTCTGGAACTCCAA | 59.175 | 52.381 | 0.00 | 0.00 | 46.97 | 3.53 |
3187 | 3369 | 4.235762 | ACGTGCGCCTGGTTCACT | 62.236 | 61.111 | 4.18 | 3.98 | 0.00 | 3.41 |
3427 | 3612 | 1.945387 | CGATCTGGTCCTTGATGGTG | 58.055 | 55.000 | 3.25 | 0.00 | 37.07 | 4.17 |
3727 | 3912 | 1.376942 | GTCGTCGTCCTCCTCCTCA | 60.377 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
3762 | 3947 | 2.126307 | GCACGAGCTGCGAGAAGA | 60.126 | 61.111 | 11.64 | 0.00 | 44.57 | 2.87 |
3833 | 4018 | 2.985809 | CTCTCTTCACTCTTGACGCTTG | 59.014 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
3840 | 4025 | 3.383620 | AGCACACTCTCTTCACTCTTG | 57.616 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
3972 | 4161 | 7.711339 | GCTAGTACCTTAGCTACATGAACATTT | 59.289 | 37.037 | 0.00 | 0.00 | 42.18 | 2.32 |
3974 | 4163 | 6.515200 | CGCTAGTACCTTAGCTACATGAACAT | 60.515 | 42.308 | 0.00 | 0.00 | 43.05 | 2.71 |
4006 | 4195 | 7.546667 | CCTTGATTAAATTCCAGTGAAACCATG | 59.453 | 37.037 | 0.00 | 0.00 | 37.80 | 3.66 |
4054 | 4243 | 9.678941 | GACGTCATCTTAGATGTGACATAATTA | 57.321 | 33.333 | 20.09 | 0.00 | 41.69 | 1.40 |
4055 | 4244 | 8.197439 | TGACGTCATCTTAGATGTGACATAATT | 58.803 | 33.333 | 15.76 | 0.00 | 41.69 | 1.40 |
4056 | 4245 | 7.649705 | GTGACGTCATCTTAGATGTGACATAAT | 59.350 | 37.037 | 23.12 | 0.00 | 40.12 | 1.28 |
4057 | 4246 | 6.972901 | GTGACGTCATCTTAGATGTGACATAA | 59.027 | 38.462 | 23.12 | 0.00 | 40.12 | 1.90 |
4058 | 4247 | 6.459710 | GGTGACGTCATCTTAGATGTGACATA | 60.460 | 42.308 | 23.12 | 0.00 | 41.50 | 2.29 |
4059 | 4248 | 5.344066 | GTGACGTCATCTTAGATGTGACAT | 58.656 | 41.667 | 23.12 | 0.00 | 40.12 | 3.06 |
4060 | 4249 | 4.380550 | GGTGACGTCATCTTAGATGTGACA | 60.381 | 45.833 | 23.12 | 16.44 | 41.50 | 3.58 |
4061 | 4250 | 4.106197 | GGTGACGTCATCTTAGATGTGAC | 58.894 | 47.826 | 23.12 | 12.83 | 39.80 | 3.67 |
4062 | 4251 | 3.761752 | TGGTGACGTCATCTTAGATGTGA | 59.238 | 43.478 | 27.93 | 2.96 | 37.85 | 3.58 |
4063 | 4252 | 4.110036 | TGGTGACGTCATCTTAGATGTG | 57.890 | 45.455 | 27.93 | 16.06 | 37.85 | 3.21 |
4064 | 4253 | 4.160439 | ACATGGTGACGTCATCTTAGATGT | 59.840 | 41.667 | 27.93 | 23.91 | 40.31 | 3.06 |
4065 | 4254 | 4.686972 | ACATGGTGACGTCATCTTAGATG | 58.313 | 43.478 | 27.93 | 23.32 | 0.00 | 2.90 |
4066 | 4255 | 5.344743 | AACATGGTGACGTCATCTTAGAT | 57.655 | 39.130 | 27.93 | 11.61 | 0.00 | 1.98 |
4067 | 4256 | 4.801330 | AACATGGTGACGTCATCTTAGA | 57.199 | 40.909 | 27.93 | 9.66 | 0.00 | 2.10 |
4068 | 4257 | 4.690748 | ACAAACATGGTGACGTCATCTTAG | 59.309 | 41.667 | 27.93 | 19.21 | 0.00 | 2.18 |
4069 | 4258 | 4.450757 | CACAAACATGGTGACGTCATCTTA | 59.549 | 41.667 | 27.93 | 10.80 | 38.54 | 2.10 |
4070 | 4259 | 3.250762 | CACAAACATGGTGACGTCATCTT | 59.749 | 43.478 | 27.93 | 19.84 | 38.54 | 2.40 |
4093 | 4302 | 0.616111 | AACAGAGCGATCAGGAGGGT | 60.616 | 55.000 | 2.38 | 0.00 | 0.00 | 4.34 |
4114 | 4323 | 3.560068 | ACAAACAAGCGAACGAGAGAAAT | 59.440 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
4181 | 4390 | 3.411517 | GGCCCAGCCCTAGAAGCA | 61.412 | 66.667 | 7.37 | 0.00 | 44.06 | 3.91 |
4226 | 4435 | 2.045340 | GTGTAGCATTGCCGGGGT | 60.045 | 61.111 | 2.18 | 0.00 | 0.00 | 4.95 |
4227 | 4436 | 2.581208 | TACGTGTAGCATTGCCGGGG | 62.581 | 60.000 | 2.18 | 0.00 | 0.00 | 5.73 |
4228 | 4437 | 1.153529 | TACGTGTAGCATTGCCGGG | 60.154 | 57.895 | 2.18 | 0.00 | 0.00 | 5.73 |
4231 | 4440 | 2.723618 | CGTTTGTACGTGTAGCATTGCC | 60.724 | 50.000 | 4.70 | 0.00 | 42.72 | 4.52 |
4232 | 4441 | 2.492001 | CGTTTGTACGTGTAGCATTGC | 58.508 | 47.619 | 0.00 | 0.00 | 42.72 | 3.56 |
4244 | 4453 | 7.354257 | TGTAAAAGCCTGTAAATCGTTTGTAC | 58.646 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
4245 | 4454 | 7.308109 | CCTGTAAAAGCCTGTAAATCGTTTGTA | 60.308 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
4246 | 4455 | 6.380095 | TGTAAAAGCCTGTAAATCGTTTGT | 57.620 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
4247 | 4456 | 5.856455 | CCTGTAAAAGCCTGTAAATCGTTTG | 59.144 | 40.000 | 0.00 | 0.00 | 0.00 | 2.93 |
4248 | 4457 | 5.766174 | TCCTGTAAAAGCCTGTAAATCGTTT | 59.234 | 36.000 | 0.00 | 0.00 | 0.00 | 3.60 |
4249 | 4458 | 5.310451 | TCCTGTAAAAGCCTGTAAATCGTT | 58.690 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
4250 | 4459 | 4.901868 | TCCTGTAAAAGCCTGTAAATCGT | 58.098 | 39.130 | 0.00 | 0.00 | 0.00 | 3.73 |
4251 | 4460 | 5.220854 | CCATCCTGTAAAAGCCTGTAAATCG | 60.221 | 44.000 | 0.00 | 0.00 | 0.00 | 3.34 |
4252 | 4461 | 5.652452 | ACCATCCTGTAAAAGCCTGTAAATC | 59.348 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
4253 | 4462 | 5.580022 | ACCATCCTGTAAAAGCCTGTAAAT | 58.420 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
4254 | 4463 | 4.993028 | ACCATCCTGTAAAAGCCTGTAAA | 58.007 | 39.130 | 0.00 | 0.00 | 0.00 | 2.01 |
4255 | 4464 | 4.650972 | ACCATCCTGTAAAAGCCTGTAA | 57.349 | 40.909 | 0.00 | 0.00 | 0.00 | 2.41 |
4256 | 4465 | 4.650972 | AACCATCCTGTAAAAGCCTGTA | 57.349 | 40.909 | 0.00 | 0.00 | 0.00 | 2.74 |
4257 | 4466 | 3.525800 | AACCATCCTGTAAAAGCCTGT | 57.474 | 42.857 | 0.00 | 0.00 | 0.00 | 4.00 |
4258 | 4467 | 5.888161 | AGATTAACCATCCTGTAAAAGCCTG | 59.112 | 40.000 | 0.00 | 0.00 | 31.20 | 4.85 |
4259 | 4468 | 6.079712 | AGATTAACCATCCTGTAAAAGCCT | 57.920 | 37.500 | 0.00 | 0.00 | 31.20 | 4.58 |
4260 | 4469 | 6.377146 | TCAAGATTAACCATCCTGTAAAAGCC | 59.623 | 38.462 | 0.00 | 0.00 | 31.20 | 4.35 |
4261 | 4470 | 7.391148 | TCAAGATTAACCATCCTGTAAAAGC | 57.609 | 36.000 | 0.00 | 0.00 | 31.20 | 3.51 |
4262 | 4471 | 9.793252 | CAATCAAGATTAACCATCCTGTAAAAG | 57.207 | 33.333 | 0.00 | 0.00 | 31.20 | 2.27 |
4263 | 4472 | 8.748412 | CCAATCAAGATTAACCATCCTGTAAAA | 58.252 | 33.333 | 0.00 | 0.00 | 31.20 | 1.52 |
4264 | 4473 | 7.893302 | ACCAATCAAGATTAACCATCCTGTAAA | 59.107 | 33.333 | 0.00 | 0.00 | 31.20 | 2.01 |
4265 | 4474 | 7.410174 | ACCAATCAAGATTAACCATCCTGTAA | 58.590 | 34.615 | 0.00 | 0.00 | 31.20 | 2.41 |
4266 | 4475 | 6.969043 | ACCAATCAAGATTAACCATCCTGTA | 58.031 | 36.000 | 0.00 | 0.00 | 31.20 | 2.74 |
4267 | 4476 | 5.831103 | ACCAATCAAGATTAACCATCCTGT | 58.169 | 37.500 | 0.00 | 0.00 | 31.20 | 4.00 |
4268 | 4477 | 5.887598 | TGACCAATCAAGATTAACCATCCTG | 59.112 | 40.000 | 0.00 | 0.00 | 31.20 | 3.86 |
4269 | 4478 | 6.078456 | TGACCAATCAAGATTAACCATCCT | 57.922 | 37.500 | 0.00 | 0.00 | 31.20 | 3.24 |
4270 | 4479 | 6.773976 | TTGACCAATCAAGATTAACCATCC | 57.226 | 37.500 | 0.00 | 0.00 | 40.01 | 3.51 |
4283 | 4492 | 2.419990 | CCGCTCACCTATTGACCAATCA | 60.420 | 50.000 | 0.00 | 0.00 | 32.50 | 2.57 |
4284 | 4493 | 2.213499 | CCGCTCACCTATTGACCAATC | 58.787 | 52.381 | 0.00 | 0.00 | 32.50 | 2.67 |
4285 | 4494 | 1.134098 | CCCGCTCACCTATTGACCAAT | 60.134 | 52.381 | 0.64 | 0.64 | 34.93 | 3.16 |
4286 | 4495 | 0.251916 | CCCGCTCACCTATTGACCAA | 59.748 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4287 | 4496 | 1.622607 | CCCCGCTCACCTATTGACCA | 61.623 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4288 | 4497 | 1.146263 | CCCCGCTCACCTATTGACC | 59.854 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
4289 | 4498 | 1.523938 | GCCCCGCTCACCTATTGAC | 60.524 | 63.158 | 0.00 | 0.00 | 0.00 | 3.18 |
4290 | 4499 | 2.908015 | GCCCCGCTCACCTATTGA | 59.092 | 61.111 | 0.00 | 0.00 | 0.00 | 2.57 |
4291 | 4500 | 2.588877 | CGCCCCGCTCACCTATTG | 60.589 | 66.667 | 0.00 | 0.00 | 0.00 | 1.90 |
4292 | 4501 | 3.861797 | CCGCCCCGCTCACCTATT | 61.862 | 66.667 | 0.00 | 0.00 | 0.00 | 1.73 |
4319 | 4528 | 4.285863 | ACCTCTCCTCTCCTGATTTACAG | 58.714 | 47.826 | 0.00 | 0.00 | 45.36 | 2.74 |
4320 | 4529 | 4.338795 | ACCTCTCCTCTCCTGATTTACA | 57.661 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
4321 | 4530 | 5.046231 | ACAAACCTCTCCTCTCCTGATTTAC | 60.046 | 44.000 | 0.00 | 0.00 | 0.00 | 2.01 |
4322 | 4531 | 5.046304 | CACAAACCTCTCCTCTCCTGATTTA | 60.046 | 44.000 | 0.00 | 0.00 | 0.00 | 1.40 |
4323 | 4532 | 3.913163 | ACAAACCTCTCCTCTCCTGATTT | 59.087 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
4324 | 4533 | 3.262915 | CACAAACCTCTCCTCTCCTGATT | 59.737 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
4325 | 4534 | 2.836981 | CACAAACCTCTCCTCTCCTGAT | 59.163 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
4326 | 4535 | 2.158310 | TCACAAACCTCTCCTCTCCTGA | 60.158 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4327 | 4536 | 2.251818 | TCACAAACCTCTCCTCTCCTG | 58.748 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
4328 | 4537 | 2.704190 | TCACAAACCTCTCCTCTCCT | 57.296 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
4329 | 4538 | 3.604582 | CAATCACAAACCTCTCCTCTCC | 58.395 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
4330 | 4539 | 3.008485 | ACCAATCACAAACCTCTCCTCTC | 59.992 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
4331 | 4540 | 2.982488 | ACCAATCACAAACCTCTCCTCT | 59.018 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
4332 | 4541 | 3.425162 | ACCAATCACAAACCTCTCCTC | 57.575 | 47.619 | 0.00 | 0.00 | 0.00 | 3.71 |
4333 | 4542 | 3.117512 | ACAACCAATCACAAACCTCTCCT | 60.118 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
4334 | 4543 | 3.222603 | ACAACCAATCACAAACCTCTCC | 58.777 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
4335 | 4544 | 4.918810 | AACAACCAATCACAAACCTCTC | 57.081 | 40.909 | 0.00 | 0.00 | 0.00 | 3.20 |
4336 | 4545 | 5.531287 | GTCTAACAACCAATCACAAACCTCT | 59.469 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
4337 | 4546 | 5.560183 | CGTCTAACAACCAATCACAAACCTC | 60.560 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4338 | 4547 | 4.274950 | CGTCTAACAACCAATCACAAACCT | 59.725 | 41.667 | 0.00 | 0.00 | 0.00 | 3.50 |
4339 | 4548 | 4.533222 | CGTCTAACAACCAATCACAAACC | 58.467 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
4340 | 4549 | 4.273969 | TCCGTCTAACAACCAATCACAAAC | 59.726 | 41.667 | 0.00 | 0.00 | 0.00 | 2.93 |
4341 | 4550 | 4.452825 | TCCGTCTAACAACCAATCACAAA | 58.547 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
4342 | 4551 | 4.074627 | TCCGTCTAACAACCAATCACAA | 57.925 | 40.909 | 0.00 | 0.00 | 0.00 | 3.33 |
4343 | 4552 | 3.755112 | TCCGTCTAACAACCAATCACA | 57.245 | 42.857 | 0.00 | 0.00 | 0.00 | 3.58 |
4344 | 4553 | 3.435671 | CCTTCCGTCTAACAACCAATCAC | 59.564 | 47.826 | 0.00 | 0.00 | 0.00 | 3.06 |
4345 | 4554 | 3.325425 | TCCTTCCGTCTAACAACCAATCA | 59.675 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
4346 | 4555 | 3.933332 | CTCCTTCCGTCTAACAACCAATC | 59.067 | 47.826 | 0.00 | 0.00 | 0.00 | 2.67 |
4347 | 4556 | 3.868754 | GCTCCTTCCGTCTAACAACCAAT | 60.869 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
4348 | 4557 | 2.549349 | GCTCCTTCCGTCTAACAACCAA | 60.549 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4349 | 4558 | 1.001633 | GCTCCTTCCGTCTAACAACCA | 59.998 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
4350 | 4559 | 1.723220 | GCTCCTTCCGTCTAACAACC | 58.277 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
4351 | 4560 | 1.336609 | ACGCTCCTTCCGTCTAACAAC | 60.337 | 52.381 | 0.00 | 0.00 | 32.83 | 3.32 |
4352 | 4561 | 0.963962 | ACGCTCCTTCCGTCTAACAA | 59.036 | 50.000 | 0.00 | 0.00 | 32.83 | 2.83 |
4353 | 4562 | 0.242825 | CACGCTCCTTCCGTCTAACA | 59.757 | 55.000 | 0.00 | 0.00 | 36.69 | 2.41 |
4354 | 4563 | 0.243095 | ACACGCTCCTTCCGTCTAAC | 59.757 | 55.000 | 0.00 | 0.00 | 36.69 | 2.34 |
4355 | 4564 | 1.825090 | TACACGCTCCTTCCGTCTAA | 58.175 | 50.000 | 0.00 | 0.00 | 36.69 | 2.10 |
4356 | 4565 | 1.825090 | TTACACGCTCCTTCCGTCTA | 58.175 | 50.000 | 0.00 | 0.00 | 36.69 | 2.59 |
4357 | 4566 | 0.963962 | TTTACACGCTCCTTCCGTCT | 59.036 | 50.000 | 0.00 | 0.00 | 36.69 | 4.18 |
4358 | 4567 | 1.725164 | CTTTTACACGCTCCTTCCGTC | 59.275 | 52.381 | 0.00 | 0.00 | 36.69 | 4.79 |
4359 | 4568 | 1.792006 | CTTTTACACGCTCCTTCCGT | 58.208 | 50.000 | 0.00 | 0.00 | 39.91 | 4.69 |
4360 | 4569 | 0.442699 | GCTTTTACACGCTCCTTCCG | 59.557 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4361 | 4570 | 0.442699 | CGCTTTTACACGCTCCTTCC | 59.557 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
4362 | 4571 | 1.136336 | CACGCTTTTACACGCTCCTTC | 60.136 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
4363 | 4572 | 0.865769 | CACGCTTTTACACGCTCCTT | 59.134 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
4364 | 4573 | 0.249741 | ACACGCTTTTACACGCTCCT | 60.250 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
4365 | 4574 | 1.421382 | TACACGCTTTTACACGCTCC | 58.579 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
4366 | 4575 | 2.473984 | ACTTACACGCTTTTACACGCTC | 59.526 | 45.455 | 0.00 | 0.00 | 0.00 | 5.03 |
4367 | 4576 | 2.473984 | GACTTACACGCTTTTACACGCT | 59.526 | 45.455 | 0.00 | 0.00 | 0.00 | 5.07 |
4368 | 4577 | 2.473984 | AGACTTACACGCTTTTACACGC | 59.526 | 45.455 | 0.00 | 0.00 | 0.00 | 5.34 |
4369 | 4578 | 4.703899 | AAGACTTACACGCTTTTACACG | 57.296 | 40.909 | 0.00 | 0.00 | 0.00 | 4.49 |
4370 | 4579 | 5.803118 | ACAAAGACTTACACGCTTTTACAC | 58.197 | 37.500 | 0.00 | 0.00 | 30.00 | 2.90 |
4371 | 4580 | 7.225145 | ACATACAAAGACTTACACGCTTTTACA | 59.775 | 33.333 | 0.00 | 0.00 | 30.00 | 2.41 |
4372 | 4581 | 7.570161 | ACATACAAAGACTTACACGCTTTTAC | 58.430 | 34.615 | 0.00 | 0.00 | 30.00 | 2.01 |
4373 | 4582 | 7.654520 | AGACATACAAAGACTTACACGCTTTTA | 59.345 | 33.333 | 0.00 | 0.00 | 30.00 | 1.52 |
4374 | 4583 | 6.482308 | AGACATACAAAGACTTACACGCTTTT | 59.518 | 34.615 | 0.00 | 0.00 | 30.00 | 2.27 |
4375 | 4584 | 5.989777 | AGACATACAAAGACTTACACGCTTT | 59.010 | 36.000 | 0.00 | 0.00 | 32.46 | 3.51 |
4376 | 4585 | 5.539048 | AGACATACAAAGACTTACACGCTT | 58.461 | 37.500 | 0.00 | 0.00 | 0.00 | 4.68 |
4377 | 4586 | 5.135508 | AGACATACAAAGACTTACACGCT | 57.864 | 39.130 | 0.00 | 0.00 | 0.00 | 5.07 |
4378 | 4587 | 5.004535 | GCTAGACATACAAAGACTTACACGC | 59.995 | 44.000 | 0.00 | 0.00 | 0.00 | 5.34 |
4379 | 4588 | 6.090783 | TGCTAGACATACAAAGACTTACACG | 58.909 | 40.000 | 0.00 | 0.00 | 0.00 | 4.49 |
4380 | 4589 | 8.480643 | AATGCTAGACATACAAAGACTTACAC | 57.519 | 34.615 | 0.00 | 0.00 | 38.34 | 2.90 |
4381 | 4590 | 9.502091 | AAAATGCTAGACATACAAAGACTTACA | 57.498 | 29.630 | 0.00 | 0.00 | 38.34 | 2.41 |
4384 | 4593 | 7.809806 | GCAAAAATGCTAGACATACAAAGACTT | 59.190 | 33.333 | 0.00 | 0.00 | 38.34 | 3.01 |
4385 | 4594 | 7.308435 | GCAAAAATGCTAGACATACAAAGACT | 58.692 | 34.615 | 0.00 | 0.00 | 38.34 | 3.24 |
4386 | 4595 | 6.528072 | GGCAAAAATGCTAGACATACAAAGAC | 59.472 | 38.462 | 0.00 | 0.00 | 38.34 | 3.01 |
4387 | 4596 | 6.350110 | GGGCAAAAATGCTAGACATACAAAGA | 60.350 | 38.462 | 0.00 | 0.00 | 38.34 | 2.52 |
4388 | 4597 | 5.807011 | GGGCAAAAATGCTAGACATACAAAG | 59.193 | 40.000 | 0.00 | 0.00 | 38.34 | 2.77 |
4389 | 4598 | 5.337169 | GGGGCAAAAATGCTAGACATACAAA | 60.337 | 40.000 | 0.00 | 0.00 | 38.34 | 2.83 |
4390 | 4599 | 4.159506 | GGGGCAAAAATGCTAGACATACAA | 59.840 | 41.667 | 0.00 | 0.00 | 38.34 | 2.41 |
4391 | 4600 | 3.699038 | GGGGCAAAAATGCTAGACATACA | 59.301 | 43.478 | 0.00 | 0.00 | 38.34 | 2.29 |
4392 | 4601 | 3.068165 | GGGGGCAAAAATGCTAGACATAC | 59.932 | 47.826 | 0.00 | 0.00 | 38.34 | 2.39 |
4393 | 4602 | 3.295973 | GGGGGCAAAAATGCTAGACATA | 58.704 | 45.455 | 0.00 | 0.00 | 38.34 | 2.29 |
4394 | 4603 | 2.110578 | GGGGGCAAAAATGCTAGACAT | 58.889 | 47.619 | 0.00 | 0.00 | 42.30 | 3.06 |
4395 | 4604 | 1.203112 | TGGGGGCAAAAATGCTAGACA | 60.203 | 47.619 | 0.00 | 0.00 | 34.73 | 3.41 |
4396 | 4605 | 1.204704 | GTGGGGGCAAAAATGCTAGAC | 59.795 | 52.381 | 0.00 | 0.00 | 34.73 | 2.59 |
4397 | 4606 | 1.555967 | GTGGGGGCAAAAATGCTAGA | 58.444 | 50.000 | 0.00 | 0.00 | 34.73 | 2.43 |
4398 | 4607 | 0.536724 | GGTGGGGGCAAAAATGCTAG | 59.463 | 55.000 | 0.40 | 0.00 | 34.73 | 3.42 |
4399 | 4608 | 0.907230 | GGGTGGGGGCAAAAATGCTA | 60.907 | 55.000 | 0.40 | 0.00 | 34.73 | 3.49 |
4400 | 4609 | 2.223443 | GGGTGGGGGCAAAAATGCT | 61.223 | 57.895 | 0.40 | 0.00 | 34.73 | 3.79 |
4401 | 4610 | 2.350895 | GGGTGGGGGCAAAAATGC | 59.649 | 61.111 | 0.00 | 0.00 | 0.00 | 3.56 |
4402 | 4611 | 2.601702 | GGGGGTGGGGGCAAAAATG | 61.602 | 63.158 | 0.00 | 0.00 | 0.00 | 2.32 |
4403 | 4612 | 2.204074 | GGGGGTGGGGGCAAAAAT | 60.204 | 61.111 | 0.00 | 0.00 | 0.00 | 1.82 |
4404 | 4613 | 3.779083 | TGGGGGTGGGGGCAAAAA | 61.779 | 61.111 | 0.00 | 0.00 | 0.00 | 1.94 |
4405 | 4614 | 4.247130 | CTGGGGGTGGGGGCAAAA | 62.247 | 66.667 | 0.00 | 0.00 | 0.00 | 2.44 |
4415 | 4624 | 1.388217 | TGGGAAAGTTCCTGGGGGT | 60.388 | 57.895 | 9.88 | 0.00 | 46.72 | 4.95 |
4417 | 4626 | 1.384191 | CCTGGGAAAGTTCCTGGGG | 59.616 | 63.158 | 9.88 | 6.19 | 46.72 | 4.96 |
4422 | 4631 | 2.037367 | GGGGCCTGGGAAAGTTCC | 59.963 | 66.667 | 0.84 | 1.10 | 46.82 | 3.62 |
4439 | 4648 | 2.727544 | CCCACAAACACAAGGCCG | 59.272 | 61.111 | 0.00 | 0.00 | 0.00 | 6.13 |
4479 | 4688 | 3.550992 | CGCGGACGAAATGGGTCG | 61.551 | 66.667 | 0.00 | 0.00 | 46.54 | 4.79 |
4518 | 4727 | 0.472471 | TTGGGCCGACTTTTCTGTCT | 59.528 | 50.000 | 0.00 | 0.00 | 35.00 | 3.41 |
4556 | 4765 | 0.382636 | GAACGAAAAGCGGACGTGTG | 60.383 | 55.000 | 0.00 | 0.00 | 46.49 | 3.82 |
4557 | 4766 | 1.814211 | CGAACGAAAAGCGGACGTGT | 61.814 | 55.000 | 0.00 | 0.00 | 46.49 | 4.49 |
4560 | 4769 | 2.202008 | GCGAACGAAAAGCGGACG | 60.202 | 61.111 | 0.00 | 0.00 | 46.49 | 4.79 |
4574 | 4783 | 1.605165 | GAAATGGGTTGGTGGGCGA | 60.605 | 57.895 | 0.00 | 0.00 | 0.00 | 5.54 |
4575 | 4784 | 2.645192 | GGAAATGGGTTGGTGGGCG | 61.645 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
4579 | 4788 | 2.645192 | GGCCGGAAATGGGTTGGTG | 61.645 | 63.158 | 5.05 | 0.00 | 0.00 | 4.17 |
4583 | 4792 | 0.546507 | AAATGGGCCGGAAATGGGTT | 60.547 | 50.000 | 5.05 | 0.00 | 0.00 | 4.11 |
4605 | 4814 | 1.159713 | CGCCGATGCAAATCTGGCTA | 61.160 | 55.000 | 15.97 | 0.00 | 43.54 | 3.93 |
4606 | 4815 | 2.475466 | CGCCGATGCAAATCTGGCT | 61.475 | 57.895 | 15.97 | 0.00 | 43.54 | 4.75 |
4607 | 4816 | 2.025156 | CGCCGATGCAAATCTGGC | 59.975 | 61.111 | 11.01 | 11.01 | 42.29 | 4.85 |
4609 | 4818 | 2.351548 | CGCGCCGATGCAAATCTG | 60.352 | 61.111 | 0.00 | 0.00 | 37.32 | 2.90 |
4610 | 4819 | 3.576356 | CCGCGCCGATGCAAATCT | 61.576 | 61.111 | 0.00 | 0.00 | 37.32 | 2.40 |
4612 | 4821 | 3.876198 | GTCCGCGCCGATGCAAAT | 61.876 | 61.111 | 0.00 | 0.00 | 37.32 | 2.32 |
4618 | 4827 | 3.527427 | TCTCATGTCCGCGCCGAT | 61.527 | 61.111 | 0.00 | 0.00 | 0.00 | 4.18 |
4631 | 4840 | 4.394078 | ACGCGCGCTTACGTCTCA | 62.394 | 61.111 | 32.58 | 0.00 | 38.28 | 3.27 |
4691 | 4921 | 2.852180 | GCGGGCGAGGGTTTGTTTT | 61.852 | 57.895 | 0.00 | 0.00 | 0.00 | 2.43 |
4692 | 4922 | 3.292159 | GCGGGCGAGGGTTTGTTT | 61.292 | 61.111 | 0.00 | 0.00 | 0.00 | 2.83 |
4706 | 4936 | 4.831307 | CGACGTCGAAGGAGGCGG | 62.831 | 72.222 | 33.35 | 0.00 | 44.42 | 6.13 |
4741 | 4974 | 4.719106 | GCAGCTGGCAGAGGCACT | 62.719 | 66.667 | 20.86 | 1.64 | 43.22 | 4.40 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.