Multiple sequence alignment - TraesCS3B01G202300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G202300 chr3B 100.000 3173 0 0 1 3173 236352336 236355508 0.000000e+00 5860.0
1 TraesCS3B01G202300 chr3D 88.229 2022 128 43 1 1966 159615034 159617001 0.000000e+00 2314.0
2 TraesCS3B01G202300 chr3D 90.893 1142 59 24 2040 3167 159617039 159618149 0.000000e+00 1491.0
3 TraesCS3B01G202300 chr3D 97.059 34 1 0 2447 2480 442343509 442343476 1.230000e-04 58.4
4 TraesCS3B01G202300 chr3A 90.566 1060 38 27 926 1956 185173870 185174896 0.000000e+00 1347.0
5 TraesCS3B01G202300 chr3A 95.169 414 17 2 2756 3167 185175488 185175900 0.000000e+00 651.0
6 TraesCS3B01G202300 chr3A 86.918 558 32 20 2040 2562 185174930 185175481 3.530000e-164 588.0
7 TraesCS3B01G202300 chr3A 96.000 50 0 1 1963 2012 137597617 137597570 2.620000e-11 80.5
8 TraesCS3B01G202300 chr2B 95.349 215 7 2 2679 2890 772141325 772141539 3.920000e-89 339.0
9 TraesCS3B01G202300 chr2B 90.323 62 3 3 1954 2015 710325567 710325625 9.440000e-11 78.7
10 TraesCS3B01G202300 chr1A 78.153 444 82 9 1 431 398108508 398108949 5.220000e-68 268.0
11 TraesCS3B01G202300 chr1A 95.918 49 1 1 1971 2019 157827297 157827344 9.440000e-11 78.7
12 TraesCS3B01G202300 chr1B 96.000 50 1 1 1963 2012 23220911 23220959 2.620000e-11 80.5
13 TraesCS3B01G202300 chr1B 86.765 68 5 4 1963 2026 579608120 579608053 4.390000e-09 73.1
14 TraesCS3B01G202300 chr6B 94.231 52 1 2 1968 2019 553059030 553058981 9.440000e-11 78.7
15 TraesCS3B01G202300 chr6B 100.000 29 0 0 526 554 352412896 352412924 2.000000e-03 54.7
16 TraesCS3B01G202300 chr7D 97.727 44 1 0 1972 2015 498229882 498229925 3.390000e-10 76.8
17 TraesCS3B01G202300 chr2A 87.143 70 6 3 1954 2023 1883405 1883471 3.390000e-10 76.8
18 TraesCS3B01G202300 chr2D 89.831 59 4 2 1954 2011 334083041 334082984 1.220000e-09 75.0
19 TraesCS3B01G202300 chr5B 100.000 28 0 0 276 303 13385488 13385461 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G202300 chr3B 236352336 236355508 3172 False 5860.0 5860 100.000000 1 3173 1 chr3B.!!$F1 3172
1 TraesCS3B01G202300 chr3D 159615034 159618149 3115 False 1902.5 2314 89.561000 1 3167 2 chr3D.!!$F1 3166
2 TraesCS3B01G202300 chr3A 185173870 185175900 2030 False 862.0 1347 90.884333 926 3167 3 chr3A.!!$F1 2241

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
582 589 0.041576 GGCGAACGTGTTTTGAGACC 60.042 55.0 0.0 0.0 0.0 3.85 F
1788 1853 0.319728 CCACTCCACTCCACTCTGTG 59.680 60.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1802 1867 0.395862 AGGCTTAGAGTGCGGCTAGA 60.396 55.0 0.0 0.0 0.0 2.43 R
2827 2961 2.246091 TGCTTGGGGATAAAAAGGGG 57.754 50.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.291153 CCTTCTCTCCCAAATGAGCCAA 60.291 50.000 0.00 0.00 32.22 4.52
41 42 3.592059 CCAAATGAGCCAAAGTTCATGG 58.408 45.455 0.00 0.00 42.49 3.66
54 55 4.758251 CATGGAGGCGCACGGTCA 62.758 66.667 10.83 0.00 0.00 4.02
55 56 3.785859 ATGGAGGCGCACGGTCAT 61.786 61.111 10.83 2.29 0.00 3.06
56 57 4.758251 TGGAGGCGCACGGTCATG 62.758 66.667 10.83 0.00 0.00 3.07
70 71 0.960364 GTCATGAAGGAGGCCGCAAA 60.960 55.000 9.31 0.00 0.00 3.68
71 72 0.960364 TCATGAAGGAGGCCGCAAAC 60.960 55.000 9.31 0.00 0.00 2.93
89 90 2.040606 GGTGTCAGGGGGAGGCTA 59.959 66.667 0.00 0.00 0.00 3.93
94 95 3.155167 CAGGGGGAGGCTACGACC 61.155 72.222 1.02 1.02 0.00 4.79
119 120 3.977427 CATGAAATGGTGAGCATGATGG 58.023 45.455 0.00 0.00 41.79 3.51
159 161 2.869233 GCAACACTGCTCCAAGAAAA 57.131 45.000 0.00 0.00 45.74 2.29
160 162 3.163630 GCAACACTGCTCCAAGAAAAA 57.836 42.857 0.00 0.00 45.74 1.94
237 242 1.431488 ATCGCATGCTGCTACAACCG 61.431 55.000 17.13 0.00 42.25 4.44
250 255 0.809241 ACAACCGGCGTCACGTTTTA 60.809 50.000 6.01 0.00 0.00 1.52
268 273 0.451383 TACTGCAATGCACAATCGCC 59.549 50.000 2.72 0.00 33.79 5.54
271 276 1.869132 GCAATGCACAATCGCCGTC 60.869 57.895 0.00 0.00 0.00 4.79
280 285 0.634731 CAATCGCCGTCGCATTTTTG 59.365 50.000 0.00 0.00 35.26 2.44
287 292 1.976045 CCGTCGCATTTTTGCTACAAC 59.024 47.619 3.96 0.00 31.80 3.32
349 354 3.576118 ACATCTATTCACGGCTGAGCTAT 59.424 43.478 3.72 0.00 0.00 2.97
350 355 3.650070 TCTATTCACGGCTGAGCTATG 57.350 47.619 3.72 3.09 0.00 2.23
359 364 1.662608 CTGAGCTATGACCCGCGAT 59.337 57.895 8.23 0.00 0.00 4.58
363 368 2.016704 GCTATGACCCGCGATGACG 61.017 63.158 8.23 0.00 42.93 4.35
371 376 2.321060 CGCGATGACGGCAATGAC 59.679 61.111 0.00 0.00 40.15 3.06
410 415 2.751259 AGTAGATTGTTGCTACGTCCGA 59.249 45.455 0.00 0.00 42.28 4.55
417 422 1.593933 GTTGCTACGTCCGACAACAAA 59.406 47.619 14.36 0.00 41.53 2.83
443 448 7.936496 TTTGCTACATCCATTCATTTAGACA 57.064 32.000 0.00 0.00 0.00 3.41
465 470 3.255642 ACAAAAATGCTGCGACCTACAAT 59.744 39.130 0.00 0.00 0.00 2.71
467 472 1.382522 AATGCTGCGACCTACAATGG 58.617 50.000 0.00 0.00 0.00 3.16
476 481 1.136305 GACCTACAATGGCGAGCTACA 59.864 52.381 0.00 0.00 0.00 2.74
485 490 4.430765 CGAGCTACAACCGGCGGT 62.431 66.667 28.83 28.83 37.65 5.68
487 492 4.388499 AGCTACAACCGGCGGTGG 62.388 66.667 34.87 32.94 35.34 4.61
500 505 1.766143 GCGGTGGCGATGATGACTTC 61.766 60.000 0.00 0.00 0.00 3.01
508 513 3.166657 GCGATGATGACTTCTTTTGTGC 58.833 45.455 0.00 0.00 0.00 4.57
516 521 1.202290 ACTTCTTTTGTGCTGCAACCG 60.202 47.619 2.77 0.00 36.72 4.44
521 526 0.179150 TTTGTGCTGCAACCGTTGTC 60.179 50.000 12.77 6.03 36.72 3.18
533 538 4.708601 CAACCGTTGTCTATGTTTGCTAC 58.291 43.478 2.87 0.00 0.00 3.58
537 544 4.378046 CCGTTGTCTATGTTTGCTACAACC 60.378 45.833 10.14 0.00 44.36 3.77
560 567 2.030274 ACAACGAAATTTGCTACCAGGC 60.030 45.455 0.00 0.00 0.00 4.85
570 577 2.047655 TACCAGGCAAGGCGAACG 60.048 61.111 0.00 0.00 0.00 3.95
578 585 0.248296 GCAAGGCGAACGTGTTTTGA 60.248 50.000 0.00 0.00 0.00 2.69
582 589 0.041576 GGCGAACGTGTTTTGAGACC 60.042 55.000 0.00 0.00 0.00 3.85
602 609 1.942657 CATCCAAGGTATGTTCCGCAG 59.057 52.381 0.00 0.00 0.00 5.18
618 625 1.206115 GCAGTGGCGTTGAAAAACGG 61.206 55.000 12.36 0.00 45.51 4.44
627 634 3.097114 GAAAAACGGCAAGCGCGG 61.097 61.111 8.83 0.00 43.71 6.46
628 635 4.639171 AAAAACGGCAAGCGCGGG 62.639 61.111 8.83 0.00 42.47 6.13
647 654 2.396955 CGAGCGTAGGTGGACGAGT 61.397 63.158 0.00 0.00 45.82 4.18
648 655 1.428620 GAGCGTAGGTGGACGAGTC 59.571 63.158 0.00 0.00 45.82 3.36
791 799 4.560856 GCTGACGCGCGGAGATCT 62.561 66.667 35.22 12.16 0.00 2.75
793 801 1.941734 CTGACGCGCGGAGATCTTC 60.942 63.158 35.22 20.46 0.00 2.87
888 914 3.419759 CGACGGCGGAAAGTTGGG 61.420 66.667 13.24 0.00 0.00 4.12
979 1015 3.972971 CTGCACTCCTGCTCTGCCC 62.973 68.421 0.00 0.00 44.57 5.36
1194 1230 2.042230 GGCTCGGGGTTCCTCCTA 60.042 66.667 0.00 0.00 36.25 2.94
1338 1378 3.249189 ACCCTTTCCCTCAGCGCA 61.249 61.111 11.47 0.00 0.00 6.09
1348 1388 0.388294 CCTCAGCGCAGATCTGATCA 59.612 55.000 27.04 0.00 39.56 2.92
1554 1619 0.455295 CGTCTCTTGACTCGTGGCTC 60.455 60.000 0.00 0.00 40.86 4.70
1560 1625 1.112916 TTGACTCGTGGCTCCTGTGA 61.113 55.000 0.00 0.00 0.00 3.58
1649 1714 2.380410 GGAGGCGTACGTGCTGTTG 61.380 63.158 17.90 0.00 34.52 3.33
1781 1846 3.625897 CACCGCCACTCCACTCCA 61.626 66.667 0.00 0.00 0.00 3.86
1782 1847 3.626924 ACCGCCACTCCACTCCAC 61.627 66.667 0.00 0.00 0.00 4.02
1783 1848 3.314331 CCGCCACTCCACTCCACT 61.314 66.667 0.00 0.00 0.00 4.00
1784 1849 2.262915 CGCCACTCCACTCCACTC 59.737 66.667 0.00 0.00 0.00 3.51
1788 1853 0.319728 CCACTCCACTCCACTCTGTG 59.680 60.000 0.00 0.00 0.00 3.66
1796 1861 3.820467 CCACTCCACTCTGTGCAATTTTA 59.180 43.478 0.00 0.00 33.26 1.52
1798 1863 5.455392 CACTCCACTCTGTGCAATTTTAAG 58.545 41.667 0.00 0.00 31.34 1.85
1801 1866 3.256631 CCACTCTGTGCAATTTTAAGCCT 59.743 43.478 0.00 0.00 31.34 4.58
1802 1867 4.262164 CCACTCTGTGCAATTTTAAGCCTT 60.262 41.667 0.00 0.00 31.34 4.35
1803 1868 4.919754 CACTCTGTGCAATTTTAAGCCTTC 59.080 41.667 0.00 0.00 0.00 3.46
1805 1870 6.003950 ACTCTGTGCAATTTTAAGCCTTCTA 58.996 36.000 0.00 0.00 0.00 2.10
1806 1871 6.150140 ACTCTGTGCAATTTTAAGCCTTCTAG 59.850 38.462 0.00 0.00 0.00 2.43
1807 1872 5.059404 TGTGCAATTTTAAGCCTTCTAGC 57.941 39.130 0.00 0.00 0.00 3.42
1808 1873 4.082245 TGTGCAATTTTAAGCCTTCTAGCC 60.082 41.667 0.00 0.00 0.00 3.93
1809 1874 3.128589 TGCAATTTTAAGCCTTCTAGCCG 59.871 43.478 0.00 0.00 0.00 5.52
1811 1876 2.483014 TTTTAAGCCTTCTAGCCGCA 57.517 45.000 0.00 0.00 0.00 5.69
1813 1878 0.902531 TTAAGCCTTCTAGCCGCACT 59.097 50.000 0.00 0.00 0.00 4.40
1814 1879 0.460311 TAAGCCTTCTAGCCGCACTC 59.540 55.000 0.00 0.00 0.00 3.51
1815 1880 1.261238 AAGCCTTCTAGCCGCACTCT 61.261 55.000 0.00 0.00 0.00 3.24
1816 1881 0.395862 AGCCTTCTAGCCGCACTCTA 60.396 55.000 0.00 0.00 0.00 2.43
1817 1882 0.460311 GCCTTCTAGCCGCACTCTAA 59.540 55.000 0.00 0.00 0.00 2.10
1818 1883 1.537135 GCCTTCTAGCCGCACTCTAAG 60.537 57.143 0.00 0.00 0.00 2.18
1819 1884 1.537135 CCTTCTAGCCGCACTCTAAGC 60.537 57.143 0.00 0.00 0.00 3.09
1821 1886 0.395862 TCTAGCCGCACTCTAAGCCT 60.396 55.000 0.00 0.00 0.00 4.58
1824 1889 0.674895 AGCCGCACTCTAAGCCTTTG 60.675 55.000 0.00 0.00 0.00 2.77
1826 1891 1.523758 CCGCACTCTAAGCCTTTGTT 58.476 50.000 0.00 0.00 0.00 2.83
1827 1892 2.695359 CCGCACTCTAAGCCTTTGTTA 58.305 47.619 0.00 0.00 0.00 2.41
1830 1895 3.000322 CGCACTCTAAGCCTTTGTTATCG 60.000 47.826 0.00 0.00 0.00 2.92
1831 1896 3.933332 GCACTCTAAGCCTTTGTTATCGT 59.067 43.478 0.00 0.00 0.00 3.73
1832 1897 5.107133 GCACTCTAAGCCTTTGTTATCGTA 58.893 41.667 0.00 0.00 0.00 3.43
1851 1925 4.270808 TCGTACTACAAACATCGATCGCTA 59.729 41.667 11.09 0.00 0.00 4.26
1852 1926 4.965762 CGTACTACAAACATCGATCGCTAA 59.034 41.667 11.09 0.00 0.00 3.09
1853 1927 5.108854 CGTACTACAAACATCGATCGCTAAC 60.109 44.000 11.09 0.00 0.00 2.34
1854 1928 4.995124 ACTACAAACATCGATCGCTAACT 58.005 39.130 11.09 0.00 0.00 2.24
1855 1929 4.798907 ACTACAAACATCGATCGCTAACTG 59.201 41.667 11.09 7.46 0.00 3.16
1856 1930 2.348666 ACAAACATCGATCGCTAACTGC 59.651 45.455 11.09 0.00 38.57 4.40
1857 1931 2.586258 AACATCGATCGCTAACTGCT 57.414 45.000 11.09 0.00 40.11 4.24
1858 1932 1.845266 ACATCGATCGCTAACTGCTG 58.155 50.000 11.09 0.40 40.11 4.41
1859 1933 0.506080 CATCGATCGCTAACTGCTGC 59.494 55.000 11.09 0.00 40.11 5.25
1860 1934 0.387202 ATCGATCGCTAACTGCTGCT 59.613 50.000 11.09 0.00 40.11 4.24
1861 1935 0.526310 TCGATCGCTAACTGCTGCTG 60.526 55.000 11.09 4.89 40.11 4.41
1862 1936 1.640604 GATCGCTAACTGCTGCTGC 59.359 57.895 8.89 8.89 40.11 5.25
1863 1937 0.809241 GATCGCTAACTGCTGCTGCT 60.809 55.000 17.00 0.00 40.48 4.24
1864 1938 1.088340 ATCGCTAACTGCTGCTGCTG 61.088 55.000 18.66 18.66 42.70 4.41
1865 1939 2.484203 GCTAACTGCTGCTGCTGC 59.516 61.111 22.51 22.51 41.07 5.25
1866 1940 2.039405 GCTAACTGCTGCTGCTGCT 61.039 57.895 27.67 13.59 41.07 4.24
1867 1941 1.794864 CTAACTGCTGCTGCTGCTG 59.205 57.895 27.75 27.75 41.07 4.41
1868 1942 1.645704 CTAACTGCTGCTGCTGCTGG 61.646 60.000 30.69 24.00 41.07 4.85
1869 1943 2.401699 TAACTGCTGCTGCTGCTGGT 62.402 55.000 30.69 28.63 41.07 4.00
1965 2042 8.418597 TCCACTGTCATCTTTTACTAGTTACT 57.581 34.615 0.00 0.00 0.00 2.24
1966 2043 8.521176 TCCACTGTCATCTTTTACTAGTTACTC 58.479 37.037 0.00 0.00 0.00 2.59
1967 2044 7.760340 CCACTGTCATCTTTTACTAGTTACTCC 59.240 40.741 0.00 0.00 0.00 3.85
1968 2045 7.760340 CACTGTCATCTTTTACTAGTTACTCCC 59.240 40.741 0.00 0.00 0.00 4.30
1969 2046 7.453752 ACTGTCATCTTTTACTAGTTACTCCCA 59.546 37.037 0.00 0.00 0.00 4.37
1970 2047 8.375493 TGTCATCTTTTACTAGTTACTCCCAT 57.625 34.615 0.00 0.00 0.00 4.00
1971 2048 8.822805 TGTCATCTTTTACTAGTTACTCCCATT 58.177 33.333 0.00 0.00 0.00 3.16
1976 2053 9.537852 TCTTTTACTAGTTACTCCCATTAGTGA 57.462 33.333 0.00 0.00 0.00 3.41
1979 2056 9.710818 TTTACTAGTTACTCCCATTAGTGATCT 57.289 33.333 0.00 0.00 0.00 2.75
1982 2059 9.710818 ACTAGTTACTCCCATTAGTGATCTAAA 57.289 33.333 0.00 0.00 39.23 1.85
1983 2060 9.968870 CTAGTTACTCCCATTAGTGATCTAAAC 57.031 37.037 0.00 0.00 39.23 2.01
1984 2061 7.490000 AGTTACTCCCATTAGTGATCTAAACG 58.510 38.462 0.00 0.00 39.23 3.60
1985 2062 4.694339 ACTCCCATTAGTGATCTAAACGC 58.306 43.478 0.00 0.00 39.23 4.84
1986 2063 4.406003 ACTCCCATTAGTGATCTAAACGCT 59.594 41.667 0.00 0.00 39.23 5.07
1987 2064 4.945246 TCCCATTAGTGATCTAAACGCTC 58.055 43.478 0.00 0.00 39.23 5.03
1988 2065 4.649674 TCCCATTAGTGATCTAAACGCTCT 59.350 41.667 0.00 0.00 39.23 4.09
1989 2066 5.128827 TCCCATTAGTGATCTAAACGCTCTT 59.871 40.000 0.00 0.00 39.23 2.85
1990 2067 6.322969 TCCCATTAGTGATCTAAACGCTCTTA 59.677 38.462 0.00 0.00 39.23 2.10
1991 2068 7.015292 TCCCATTAGTGATCTAAACGCTCTTAT 59.985 37.037 0.00 0.00 39.23 1.73
1992 2069 8.304596 CCCATTAGTGATCTAAACGCTCTTATA 58.695 37.037 0.00 0.00 39.23 0.98
1993 2070 9.862371 CCATTAGTGATCTAAACGCTCTTATAT 57.138 33.333 0.00 0.00 39.23 0.86
2003 2080 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
2004 2081 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
2005 2082 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
2006 2083 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
2007 2084 6.040166 ACGCTCTTATATTTCTTTACGGAGGA 59.960 38.462 0.00 0.00 0.00 3.71
2008 2085 6.921857 CGCTCTTATATTTCTTTACGGAGGAA 59.078 38.462 0.00 0.00 0.00 3.36
2009 2086 7.115095 CGCTCTTATATTTCTTTACGGAGGAAG 59.885 40.741 0.00 0.00 0.00 3.46
2010 2087 7.927092 GCTCTTATATTTCTTTACGGAGGAAGT 59.073 37.037 0.00 0.00 0.00 3.01
2024 2101 6.130569 ACGGAGGAAGTACTAGATTCATCTT 58.869 40.000 15.71 0.00 36.67 2.40
2027 2104 5.837437 AGGAAGTACTAGATTCATCTTGCG 58.163 41.667 0.00 0.00 38.32 4.85
2243 2333 1.669760 TCAAACGGGTAGCGCAAGG 60.670 57.895 11.47 0.00 38.28 3.61
2250 2340 1.648467 GGGTAGCGCAAGGAAAGCTG 61.648 60.000 11.47 0.00 41.80 4.24
2305 2395 2.359981 TAGGGTCGGATCAAGATCGT 57.640 50.000 4.14 0.00 38.69 3.73
2335 2431 8.082852 AGCTGAGTATTATTGTCTTATGTACCG 58.917 37.037 0.00 0.00 0.00 4.02
2362 2489 2.799412 GAGCTGATCTTGAGCCAATACG 59.201 50.000 0.00 0.00 37.12 3.06
2363 2490 2.432146 AGCTGATCTTGAGCCAATACGA 59.568 45.455 0.14 0.00 37.12 3.43
2364 2491 3.070734 AGCTGATCTTGAGCCAATACGAT 59.929 43.478 0.14 0.00 37.12 3.73
2365 2492 4.281941 AGCTGATCTTGAGCCAATACGATA 59.718 41.667 0.14 0.00 37.12 2.92
2366 2493 4.387256 GCTGATCTTGAGCCAATACGATAC 59.613 45.833 0.00 0.00 0.00 2.24
2392 2519 0.035534 TTAGCTCCAATGCTCGCCAA 60.036 50.000 0.00 0.00 42.97 4.52
2502 2631 3.220999 TAGCGCACGTGGTCAAGCT 62.221 57.895 18.88 8.93 38.57 3.74
2514 2643 1.202076 GGTCAAGCTTTCTATGCACGC 60.202 52.381 0.00 0.00 0.00 5.34
2530 2659 4.864633 TGCACGCATGAAGTTTCATAAAA 58.135 34.783 7.01 0.00 45.62 1.52
2652 2781 2.093973 CGCATAGAAGACCACAGGAGTT 60.094 50.000 0.00 0.00 0.00 3.01
2674 2805 7.527457 AGTTATTCCTTCATGAAACTTTACGC 58.473 34.615 9.88 0.00 0.00 4.42
2696 2827 4.261656 GCGAGTATAACACTAGACCATGCT 60.262 45.833 0.00 0.00 37.72 3.79
2827 2961 9.209175 CTATATGCTGTGTAGGTATTTTTCTCC 57.791 37.037 0.00 0.00 0.00 3.71
2852 2986 5.348164 CCTTTTTATCCCCAAGCAAATACG 58.652 41.667 0.00 0.00 0.00 3.06
2869 3003 8.493547 AGCAAATACGAAAAGTTAGTCAACTAC 58.506 33.333 0.00 0.00 44.41 2.73
3018 3155 4.653801 ACCCTGGCAACTTGAGTAAATTTT 59.346 37.500 0.00 0.00 37.61 1.82
3035 3172 7.832187 AGTAAATTTTAGCCAACCTATACAGCA 59.168 33.333 0.00 0.00 0.00 4.41
3169 3306 5.965922 GCCCTTGCTATTTGATGTAAAACT 58.034 37.500 0.00 0.00 33.53 2.66
3170 3307 5.807011 GCCCTTGCTATTTGATGTAAAACTG 59.193 40.000 0.00 0.00 33.53 3.16
3171 3308 6.332630 CCCTTGCTATTTGATGTAAAACTGG 58.667 40.000 0.00 0.00 0.00 4.00
3172 3309 6.071391 CCCTTGCTATTTGATGTAAAACTGGT 60.071 38.462 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.432046 GCTCATTTGGGAGAGAAGGAGAG 60.432 52.174 2.39 0.00 36.16 3.20
12 13 2.795231 TGGCTCATTTGGGAGAGAAG 57.205 50.000 0.00 0.00 37.05 2.85
13 14 3.181429 ACTTTGGCTCATTTGGGAGAGAA 60.181 43.478 0.00 0.00 37.05 2.87
14 15 2.376518 ACTTTGGCTCATTTGGGAGAGA 59.623 45.455 0.00 0.00 37.05 3.10
32 33 2.034879 CGTGCGCCTCCATGAACTT 61.035 57.895 4.18 0.00 0.00 2.66
41 42 2.434185 TTCATGACCGTGCGCCTC 60.434 61.111 4.18 0.00 0.00 4.70
54 55 2.040544 CGTTTGCGGCCTCCTTCAT 61.041 57.895 0.00 0.00 0.00 2.57
55 56 2.668212 CGTTTGCGGCCTCCTTCA 60.668 61.111 0.00 0.00 0.00 3.02
71 72 3.976490 TAGCCTCCCCCTGACACCG 62.976 68.421 0.00 0.00 0.00 4.94
87 88 0.937304 CATTTCATGGCCGGTCGTAG 59.063 55.000 0.00 0.00 0.00 3.51
89 90 1.748879 CCATTTCATGGCCGGTCGT 60.749 57.895 0.00 0.00 44.70 4.34
108 109 2.515290 CTGCGGCCATCATGCTCA 60.515 61.111 2.24 0.00 0.00 4.26
158 160 3.430333 AAAACTGCGACATCGGTTTTT 57.570 38.095 12.61 2.53 39.12 1.94
159 161 3.112580 CAAAAACTGCGACATCGGTTTT 58.887 40.909 12.61 12.61 41.69 2.43
160 162 2.726633 CAAAAACTGCGACATCGGTTT 58.273 42.857 3.08 3.45 40.23 3.27
161 163 1.599419 GCAAAAACTGCGACATCGGTT 60.599 47.619 3.08 0.00 42.37 4.44
162 164 0.040425 GCAAAAACTGCGACATCGGT 60.040 50.000 3.08 0.00 42.37 4.69
163 165 2.712077 GCAAAAACTGCGACATCGG 58.288 52.632 3.08 0.00 42.37 4.18
237 242 0.305313 TTGCAGTAAAACGTGACGCC 59.695 50.000 4.25 0.00 0.00 5.68
250 255 1.213537 GGCGATTGTGCATTGCAGT 59.786 52.632 12.53 0.89 43.61 4.40
268 273 1.976045 GGTTGTAGCAAAAATGCGACG 59.024 47.619 9.01 0.00 42.10 5.12
271 276 2.323939 TCGGTTGTAGCAAAAATGCG 57.676 45.000 0.00 0.00 40.27 4.73
274 279 4.078363 CGACATCGGTTGTAGCAAAAAT 57.922 40.909 0.00 0.00 39.18 1.82
332 337 2.035961 GGTCATAGCTCAGCCGTGAATA 59.964 50.000 3.29 0.00 30.14 1.75
339 344 2.280457 GCGGGTCATAGCTCAGCC 60.280 66.667 0.00 0.00 0.00 4.85
387 392 4.577693 TCGGACGTAGCAACAATCTACTAT 59.422 41.667 0.00 0.00 35.47 2.12
397 402 1.210870 TTGTTGTCGGACGTAGCAAC 58.789 50.000 16.25 16.25 40.89 4.17
406 411 4.902443 TGTAGCAAAATTTGTTGTCGGA 57.098 36.364 7.60 0.00 0.00 4.55
410 415 7.215789 TGAATGGATGTAGCAAAATTTGTTGT 58.784 30.769 7.60 0.00 0.00 3.32
417 422 8.970020 TGTCTAAATGAATGGATGTAGCAAAAT 58.030 29.630 0.00 0.00 0.00 1.82
443 448 2.226330 TGTAGGTCGCAGCATTTTTGT 58.774 42.857 0.00 0.00 0.00 2.83
465 470 4.752879 GCCGGTTGTAGCTCGCCA 62.753 66.667 1.90 0.00 0.00 5.69
485 490 3.189080 CACAAAAGAAGTCATCATCGCCA 59.811 43.478 0.00 0.00 0.00 5.69
487 492 3.120060 AGCACAAAAGAAGTCATCATCGC 60.120 43.478 0.00 0.00 0.00 4.58
494 499 2.159254 GGTTGCAGCACAAAAGAAGTCA 60.159 45.455 2.05 0.00 40.82 3.41
500 505 0.922717 CAACGGTTGCAGCACAAAAG 59.077 50.000 8.09 0.00 40.82 2.27
508 513 3.554524 CAAACATAGACAACGGTTGCAG 58.445 45.455 20.20 8.55 0.00 4.41
516 521 4.449743 TCGGTTGTAGCAAACATAGACAAC 59.550 41.667 7.49 7.49 45.81 3.32
521 526 4.665645 CGTTGTCGGTTGTAGCAAACATAG 60.666 45.833 0.00 0.00 38.10 2.23
533 538 2.726633 AGCAAATTTCGTTGTCGGTTG 58.273 42.857 0.00 0.00 37.69 3.77
537 544 3.479006 CTGGTAGCAAATTTCGTTGTCG 58.521 45.455 0.00 0.00 38.55 4.35
560 567 1.329292 TCTCAAAACACGTTCGCCTTG 59.671 47.619 0.00 0.00 0.00 3.61
570 577 3.222603 ACCTTGGATGGTCTCAAAACAC 58.777 45.455 0.00 0.00 34.86 3.32
578 585 2.170607 CGGAACATACCTTGGATGGTCT 59.829 50.000 4.45 0.00 40.30 3.85
582 589 1.942657 CTGCGGAACATACCTTGGATG 59.057 52.381 0.00 0.00 0.00 3.51
608 615 1.941734 CGCGCTTGCCGTTTTTCAA 60.942 52.632 5.56 0.00 39.71 2.69
609 616 2.352915 CGCGCTTGCCGTTTTTCA 60.353 55.556 5.56 0.00 39.71 2.69
611 618 4.639171 CCCGCGCTTGCCGTTTTT 62.639 61.111 5.56 0.00 39.71 1.94
627 634 4.849329 CGTCCACCTACGCTCGCC 62.849 72.222 0.00 0.00 35.87 5.54
628 635 3.736482 CTCGTCCACCTACGCTCGC 62.736 68.421 0.00 0.00 42.56 5.03
634 641 1.303799 TGCTCGACTCGTCCACCTAC 61.304 60.000 0.00 0.00 0.00 3.18
759 767 3.774528 AGCCGCCTCATGCTCGAA 61.775 61.111 0.00 0.00 38.05 3.71
923 949 1.609210 AAGCCCACATTTTCCCCCG 60.609 57.895 0.00 0.00 0.00 5.73
926 952 0.037046 CTGCAAGCCCACATTTTCCC 60.037 55.000 0.00 0.00 0.00 3.97
927 953 0.681175 ACTGCAAGCCCACATTTTCC 59.319 50.000 0.00 0.00 37.60 3.13
928 954 1.666888 CGACTGCAAGCCCACATTTTC 60.667 52.381 0.00 0.00 37.60 2.29
929 955 0.314935 CGACTGCAAGCCCACATTTT 59.685 50.000 0.00 0.00 37.60 1.82
930 956 1.959085 CGACTGCAAGCCCACATTT 59.041 52.632 0.00 0.00 37.60 2.32
979 1015 0.107214 TTTCTTATCCTGCGGGCTGG 60.107 55.000 6.73 10.03 36.53 4.85
1309 1349 0.099436 GAAAGGGTCGATGCACATGC 59.901 55.000 0.00 0.00 42.50 4.06
1310 1350 0.734889 GGAAAGGGTCGATGCACATG 59.265 55.000 0.00 0.00 0.00 3.21
1311 1351 0.394352 GGGAAAGGGTCGATGCACAT 60.394 55.000 0.00 0.00 0.00 3.21
1312 1352 1.002624 GGGAAAGGGTCGATGCACA 60.003 57.895 0.00 0.00 0.00 4.57
1317 1357 1.908483 GCTGAGGGAAAGGGTCGAT 59.092 57.895 0.00 0.00 0.00 3.59
1338 1378 3.755378 GCAAACAACACCTGATCAGATCT 59.245 43.478 24.62 3.01 0.00 2.75
1348 1388 1.724582 GGCACGAGCAAACAACACCT 61.725 55.000 7.26 0.00 44.61 4.00
1426 1466 1.216710 CTCTCGTCCAGGAACAGCC 59.783 63.158 0.00 0.00 0.00 4.85
1430 1470 2.579738 GCCCTCTCGTCCAGGAAC 59.420 66.667 0.00 0.00 31.91 3.62
1527 1567 1.661821 GTCAAGAGACGCACACGCT 60.662 57.895 0.00 0.00 45.53 5.07
1539 1579 0.827925 ACAGGAGCCACGAGTCAAGA 60.828 55.000 0.00 0.00 0.00 3.02
1540 1580 0.668706 CACAGGAGCCACGAGTCAAG 60.669 60.000 0.00 0.00 0.00 3.02
1554 1619 1.142748 GGACTCTGCGGATCACAGG 59.857 63.158 13.32 7.99 35.78 4.00
1560 1625 3.532155 GGCGAGGACTCTGCGGAT 61.532 66.667 0.00 0.00 32.66 4.18
1780 1845 4.510038 AGGCTTAAAATTGCACAGAGTG 57.490 40.909 0.00 0.00 36.51 3.51
1781 1846 4.829492 AGAAGGCTTAAAATTGCACAGAGT 59.171 37.500 0.00 0.00 0.00 3.24
1782 1847 5.382618 AGAAGGCTTAAAATTGCACAGAG 57.617 39.130 0.00 0.00 0.00 3.35
1783 1848 5.106157 GCTAGAAGGCTTAAAATTGCACAGA 60.106 40.000 0.00 0.00 0.00 3.41
1784 1849 5.098211 GCTAGAAGGCTTAAAATTGCACAG 58.902 41.667 0.00 0.00 0.00 3.66
1788 1853 3.695816 CGGCTAGAAGGCTTAAAATTGC 58.304 45.455 0.00 0.00 38.85 3.56
1796 1861 1.219393 GAGTGCGGCTAGAAGGCTT 59.781 57.895 0.00 0.00 38.85 4.35
1798 1863 0.460311 TTAGAGTGCGGCTAGAAGGC 59.540 55.000 0.00 0.00 37.44 4.35
1801 1866 0.460311 GGCTTAGAGTGCGGCTAGAA 59.540 55.000 0.00 0.00 0.00 2.10
1802 1867 0.395862 AGGCTTAGAGTGCGGCTAGA 60.396 55.000 0.00 0.00 0.00 2.43
1803 1868 0.461961 AAGGCTTAGAGTGCGGCTAG 59.538 55.000 0.00 0.00 32.85 3.42
1805 1870 0.674895 CAAAGGCTTAGAGTGCGGCT 60.675 55.000 0.00 0.00 34.81 5.52
1806 1871 0.955919 ACAAAGGCTTAGAGTGCGGC 60.956 55.000 0.00 0.00 0.00 6.53
1807 1872 1.523758 AACAAAGGCTTAGAGTGCGG 58.476 50.000 0.00 0.00 0.00 5.69
1808 1873 3.000322 CGATAACAAAGGCTTAGAGTGCG 60.000 47.826 0.00 0.00 0.00 5.34
1809 1874 3.933332 ACGATAACAAAGGCTTAGAGTGC 59.067 43.478 0.00 0.00 0.00 4.40
1811 1876 6.527057 AGTACGATAACAAAGGCTTAGAGT 57.473 37.500 0.00 0.00 0.00 3.24
1813 1878 7.395190 TGTAGTACGATAACAAAGGCTTAGA 57.605 36.000 0.00 0.00 0.00 2.10
1814 1879 8.378421 GTTTGTAGTACGATAACAAAGGCTTAG 58.622 37.037 14.78 0.00 42.12 2.18
1815 1880 7.871973 TGTTTGTAGTACGATAACAAAGGCTTA 59.128 33.333 14.78 0.00 42.12 3.09
1816 1881 6.707161 TGTTTGTAGTACGATAACAAAGGCTT 59.293 34.615 14.78 0.00 42.12 4.35
1817 1882 6.225318 TGTTTGTAGTACGATAACAAAGGCT 58.775 36.000 14.78 0.00 42.12 4.58
1818 1883 6.470557 TGTTTGTAGTACGATAACAAAGGC 57.529 37.500 14.78 8.37 42.12 4.35
1819 1884 7.274033 TCGATGTTTGTAGTACGATAACAAAGG 59.726 37.037 15.13 9.87 42.12 3.11
1821 1886 8.692110 ATCGATGTTTGTAGTACGATAACAAA 57.308 30.769 15.13 12.00 39.95 2.83
1824 1889 6.397274 GCGATCGATGTTTGTAGTACGATAAC 60.397 42.308 21.57 1.49 39.83 1.89
1826 1891 5.049886 AGCGATCGATGTTTGTAGTACGATA 60.050 40.000 21.57 0.00 39.83 2.92
1827 1892 3.973135 GCGATCGATGTTTGTAGTACGAT 59.027 43.478 21.57 0.00 41.83 3.73
1830 1895 5.970023 AGTTAGCGATCGATGTTTGTAGTAC 59.030 40.000 21.57 0.00 0.00 2.73
1831 1896 5.969435 CAGTTAGCGATCGATGTTTGTAGTA 59.031 40.000 21.57 0.00 0.00 1.82
1832 1897 4.798907 CAGTTAGCGATCGATGTTTGTAGT 59.201 41.667 21.57 0.00 0.00 2.73
1851 1925 2.984155 CCAGCAGCAGCAGCAGTT 60.984 61.111 12.92 0.00 45.49 3.16
1852 1926 3.786884 AACCAGCAGCAGCAGCAGT 62.787 57.895 12.92 6.12 45.49 4.40
1853 1927 2.984155 AACCAGCAGCAGCAGCAG 60.984 61.111 12.92 3.65 45.49 4.24
1854 1928 3.292159 CAACCAGCAGCAGCAGCA 61.292 61.111 12.92 0.00 45.49 4.41
1855 1929 4.719369 GCAACCAGCAGCAGCAGC 62.719 66.667 3.17 0.46 45.49 5.25
1965 2042 4.649674 AGAGCGTTTAGATCACTAATGGGA 59.350 41.667 0.00 0.00 38.23 4.37
1966 2043 4.950050 AGAGCGTTTAGATCACTAATGGG 58.050 43.478 0.00 0.00 38.23 4.00
1967 2044 9.862371 ATATAAGAGCGTTTAGATCACTAATGG 57.138 33.333 0.00 0.00 38.23 3.16
1977 2054 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
1978 2055 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
1979 2056 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
1980 2057 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
1981 2058 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
1982 2059 6.040166 TCCTCCGTAAAGAAATATAAGAGCGT 59.960 38.462 0.00 0.00 0.00 5.07
1983 2060 6.444633 TCCTCCGTAAAGAAATATAAGAGCG 58.555 40.000 0.00 0.00 0.00 5.03
1984 2061 7.927092 ACTTCCTCCGTAAAGAAATATAAGAGC 59.073 37.037 0.00 0.00 0.00 4.09
1990 2067 9.638176 TCTAGTACTTCCTCCGTAAAGAAATAT 57.362 33.333 0.00 0.00 0.00 1.28
1991 2068 9.638176 ATCTAGTACTTCCTCCGTAAAGAAATA 57.362 33.333 0.00 0.00 0.00 1.40
1992 2069 7.951347 TCTAGTACTTCCTCCGTAAAGAAAT 57.049 36.000 0.00 0.00 0.00 2.17
1993 2070 7.951347 ATCTAGTACTTCCTCCGTAAAGAAA 57.049 36.000 0.00 0.00 0.00 2.52
1994 2071 7.613022 TGAATCTAGTACTTCCTCCGTAAAGAA 59.387 37.037 0.00 0.00 0.00 2.52
1995 2072 7.114754 TGAATCTAGTACTTCCTCCGTAAAGA 58.885 38.462 0.00 0.00 0.00 2.52
1996 2073 7.330900 TGAATCTAGTACTTCCTCCGTAAAG 57.669 40.000 0.00 0.00 0.00 1.85
1997 2074 7.778853 AGATGAATCTAGTACTTCCTCCGTAAA 59.221 37.037 0.00 0.00 34.85 2.01
1998 2075 7.288560 AGATGAATCTAGTACTTCCTCCGTAA 58.711 38.462 0.00 0.00 34.85 3.18
1999 2076 6.839454 AGATGAATCTAGTACTTCCTCCGTA 58.161 40.000 0.00 0.00 34.85 4.02
2000 2077 5.697067 AGATGAATCTAGTACTTCCTCCGT 58.303 41.667 0.00 0.00 34.85 4.69
2001 2078 6.442952 CAAGATGAATCTAGTACTTCCTCCG 58.557 44.000 0.00 0.00 35.76 4.63
2002 2079 6.220201 GCAAGATGAATCTAGTACTTCCTCC 58.780 44.000 0.00 0.00 35.76 4.30
2003 2080 5.918011 CGCAAGATGAATCTAGTACTTCCTC 59.082 44.000 0.00 0.00 43.02 3.71
2004 2081 5.361285 ACGCAAGATGAATCTAGTACTTCCT 59.639 40.000 0.00 0.00 43.62 3.36
2005 2082 5.593010 ACGCAAGATGAATCTAGTACTTCC 58.407 41.667 0.00 0.00 43.62 3.46
2006 2083 7.419204 AGTACGCAAGATGAATCTAGTACTTC 58.581 38.462 19.50 0.00 42.80 3.01
2007 2084 7.336161 AGTACGCAAGATGAATCTAGTACTT 57.664 36.000 19.50 11.07 42.80 2.24
2008 2085 6.945938 AGTACGCAAGATGAATCTAGTACT 57.054 37.500 19.50 19.50 41.87 2.73
2009 2086 8.085720 TCTAGTACGCAAGATGAATCTAGTAC 57.914 38.462 17.12 17.12 39.69 2.73
2010 2087 8.850007 ATCTAGTACGCAAGATGAATCTAGTA 57.150 34.615 7.39 0.00 43.62 1.82
2011 2088 7.445707 TGATCTAGTACGCAAGATGAATCTAGT 59.554 37.037 11.59 0.00 43.62 2.57
2012 2089 7.811653 TGATCTAGTACGCAAGATGAATCTAG 58.188 38.462 11.59 0.00 43.62 2.43
2015 2092 7.273164 CAGATGATCTAGTACGCAAGATGAATC 59.727 40.741 11.59 12.73 43.62 2.52
2024 2101 3.699538 ACCAACAGATGATCTAGTACGCA 59.300 43.478 0.00 0.00 0.00 5.24
2027 2104 6.703607 CCATCAACCAACAGATGATCTAGTAC 59.296 42.308 0.00 0.00 43.28 2.73
2184 2274 1.971695 GGCTCCCCCAAAACTCACG 60.972 63.158 0.00 0.00 0.00 4.35
2185 2275 4.097218 GGCTCCCCCAAAACTCAC 57.903 61.111 0.00 0.00 0.00 3.51
2305 2395 8.918116 ACATAAGACAATAATACTCAGCTCAGA 58.082 33.333 0.00 0.00 0.00 3.27
2335 2431 3.693085 TGGCTCAAGATCAGCTCATTTTC 59.307 43.478 3.79 0.00 37.05 2.29
2340 2436 3.739209 CGTATTGGCTCAAGATCAGCTCA 60.739 47.826 3.79 0.00 37.05 4.26
2362 2489 8.812329 CGAGCATTGGAGCTAAAATATAGTATC 58.188 37.037 0.00 0.00 46.75 2.24
2363 2490 7.278868 GCGAGCATTGGAGCTAAAATATAGTAT 59.721 37.037 0.00 0.00 46.75 2.12
2364 2491 6.590292 GCGAGCATTGGAGCTAAAATATAGTA 59.410 38.462 0.00 0.00 46.75 1.82
2365 2492 5.409826 GCGAGCATTGGAGCTAAAATATAGT 59.590 40.000 0.00 0.00 46.75 2.12
2366 2493 5.163814 GGCGAGCATTGGAGCTAAAATATAG 60.164 44.000 0.00 0.00 46.75 1.31
2480 2609 0.601576 TTGACCACGTGCGCTACAAT 60.602 50.000 10.91 0.00 0.00 2.71
2502 2631 4.215185 TGAAACTTCATGCGTGCATAGAAA 59.785 37.500 7.07 2.22 34.91 2.52
2622 2751 6.403049 TGTGGTCTTCTATGCGAATAGAAAA 58.597 36.000 23.26 10.85 41.14 2.29
2626 2755 4.038042 TCCTGTGGTCTTCTATGCGAATAG 59.962 45.833 3.76 3.76 0.00 1.73
2627 2756 3.958147 TCCTGTGGTCTTCTATGCGAATA 59.042 43.478 0.00 0.00 0.00 1.75
2628 2757 2.766263 TCCTGTGGTCTTCTATGCGAAT 59.234 45.455 0.00 0.00 0.00 3.34
2652 2781 5.870433 TCGCGTAAAGTTTCATGAAGGAATA 59.130 36.000 8.41 0.00 0.00 1.75
2661 2790 6.810182 AGTGTTATACTCGCGTAAAGTTTCAT 59.190 34.615 5.77 0.00 33.17 2.57
2662 2791 6.151691 AGTGTTATACTCGCGTAAAGTTTCA 58.848 36.000 5.77 0.00 33.17 2.69
2666 2795 6.457528 GGTCTAGTGTTATACTCGCGTAAAGT 60.458 42.308 5.77 4.89 40.89 2.66
2674 2805 5.440234 AGCATGGTCTAGTGTTATACTCG 57.560 43.478 0.00 0.00 40.89 4.18
2684 2815 6.952773 TTTTTGTAACAAGCATGGTCTAGT 57.047 33.333 0.00 0.00 0.00 2.57
2791 2923 8.750298 ACCTACACAGCATATAGGATAATACAC 58.250 37.037 9.56 0.00 38.20 2.90
2827 2961 2.246091 TGCTTGGGGATAAAAAGGGG 57.754 50.000 0.00 0.00 0.00 4.79
3018 3155 4.258543 GTGTTTGCTGTATAGGTTGGCTA 58.741 43.478 0.00 0.00 0.00 3.93
3035 3172 2.335316 TAGTTTGGCCAGACGTGTTT 57.665 45.000 19.88 5.61 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.