Multiple sequence alignment - TraesCS3B01G201800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G201800 chr3B 100.000 4492 0 0 1 4492 236122894 236127385 0.000000e+00 8296.0
1 TraesCS3B01G201800 chr3A 94.028 3399 163 25 700 4079 168840334 168836957 0.000000e+00 5116.0
2 TraesCS3B01G201800 chr3A 88.156 667 38 19 1 662 168840964 168840334 0.000000e+00 756.0
3 TraesCS3B01G201800 chr3D 94.622 2343 108 11 1747 4081 159426753 159429085 0.000000e+00 3613.0
4 TraesCS3B01G201800 chr3D 93.060 951 38 12 790 1718 159425443 159426387 0.000000e+00 1365.0
5 TraesCS3B01G201800 chr3D 87.692 455 43 9 1 451 159424441 159424886 6.660000e-143 518.0
6 TraesCS3B01G201800 chr3D 92.670 191 12 2 4303 4492 39861923 39861734 1.590000e-69 274.0
7 TraesCS3B01G201800 chr3D 92.553 188 12 2 4305 4492 413674073 413673888 7.410000e-68 268.0
8 TraesCS3B01G201800 chr3D 91.176 68 5 1 641 708 159425286 159425352 1.720000e-14 91.6
9 TraesCS3B01G201800 chrUn 85.586 333 45 3 1685 2014 308865860 308866192 3.330000e-91 346.0
10 TraesCS3B01G201800 chr7A 85.586 333 45 3 1685 2014 675878240 675878572 3.330000e-91 346.0
11 TraesCS3B01G201800 chr7A 85.586 333 45 3 1685 2014 675916115 675916447 3.330000e-91 346.0
12 TraesCS3B01G201800 chr6B 85.085 295 40 4 1685 1975 21944574 21944280 9.450000e-77 298.0
13 TraesCS3B01G201800 chr6B 93.085 188 12 1 4305 4492 681085414 681085228 1.590000e-69 274.0
14 TraesCS3B01G201800 chr2D 93.194 191 11 1 4302 4492 553936603 553936791 3.420000e-71 279.0
15 TraesCS3B01G201800 chr2D 92.593 189 12 2 4305 4492 295159301 295159114 2.060000e-68 270.0
16 TraesCS3B01G201800 chr2D 78.679 333 39 17 1685 2014 91346025 91346328 4.590000e-45 193.0
17 TraesCS3B01G201800 chr6D 92.553 188 13 1 4305 4492 38861961 38862147 7.410000e-68 268.0
18 TraesCS3B01G201800 chr7D 92.553 188 11 2 4305 4492 292365569 292365753 2.660000e-67 267.0
19 TraesCS3B01G201800 chr7D 79.592 343 28 14 1975 2305 412164744 412165056 1.640000e-49 207.0
20 TraesCS3B01G201800 chr1D 92.473 186 12 2 4307 4492 47438312 47438129 9.580000e-67 265.0
21 TraesCS3B01G201800 chr1D 91.623 191 15 1 4302 4492 55023581 55023770 3.450000e-66 263.0
22 TraesCS3B01G201800 chr5D 82.624 282 47 2 1826 2106 536539649 536539369 9.650000e-62 248.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G201800 chr3B 236122894 236127385 4491 False 8296.0 8296 100.0000 1 4492 1 chr3B.!!$F1 4491
1 TraesCS3B01G201800 chr3A 168836957 168840964 4007 True 2936.0 5116 91.0920 1 4079 2 chr3A.!!$R1 4078
2 TraesCS3B01G201800 chr3D 159424441 159429085 4644 False 1396.9 3613 91.6375 1 4081 4 chr3D.!!$F1 4080

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 117 0.033109 TCGAGGGATCTCTCTGCCAA 60.033 55.0 20.34 0.0 37.86 4.52 F
757 1030 0.108585 AAGCTGCTTTCCCGAGAACA 59.891 50.0 9.53 0.0 0.00 3.18 F
1144 1432 0.467384 ATCTGGATGGGTCTTCTGCG 59.533 55.0 0.00 0.0 0.00 5.18 F
2250 2887 0.886490 GCCACAGGGATATCAAGCCG 60.886 60.0 4.83 0.0 35.59 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1120 1408 0.833287 AAGACCCATCCAGATGACGG 59.167 55.000 9.24 5.44 41.20 4.79 R
2364 3001 1.600957 CACAGTTTCAGCTGGTGAGTG 59.399 52.381 15.13 14.56 40.59 3.51 R
2571 3208 2.240667 AGGGCTACATTCAAGATGCACT 59.759 45.455 0.00 0.00 0.00 4.40 R
4089 4736 0.108992 CAGCACTGCAATTCGCCAAT 60.109 50.000 3.30 0.00 41.33 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.341609 AAAGGAGAGGAGAGAGGGGG 59.658 60.000 0.00 0.00 0.00 5.40
34 35 0.556380 AAGGAGAGGAGAGAGGGGGA 60.556 60.000 0.00 0.00 0.00 4.81
35 36 0.998945 AGGAGAGGAGAGAGGGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
36 37 0.996762 GGAGAGGAGAGAGGGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
39 40 0.478507 GAGGAGAGAGGGGGAGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
40 41 0.998945 AGGAGAGAGGGGGAGAGAGG 60.999 65.000 0.00 0.00 0.00 3.69
41 42 0.996762 GGAGAGAGGGGGAGAGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
42 43 0.930726 GAGAGAGGGGGAGAGAGGAA 59.069 60.000 0.00 0.00 0.00 3.36
43 44 1.289530 GAGAGAGGGGGAGAGAGGAAA 59.710 57.143 0.00 0.00 0.00 3.13
47 48 2.379459 GGGGGAGAGAGGAAAGGGC 61.379 68.421 0.00 0.00 0.00 5.19
91 100 2.354072 GGAGCGAGCGGAGAATCG 60.354 66.667 0.00 0.00 40.40 3.34
94 103 2.354072 GCGAGCGGAGAATCGAGG 60.354 66.667 0.00 0.00 39.96 4.63
106 115 1.272212 GAATCGAGGGATCTCTCTGCC 59.728 57.143 20.34 3.55 37.86 4.85
107 116 0.187117 ATCGAGGGATCTCTCTGCCA 59.813 55.000 20.34 2.22 37.86 4.92
108 117 0.033109 TCGAGGGATCTCTCTGCCAA 60.033 55.000 20.34 0.00 37.86 4.52
109 118 0.388659 CGAGGGATCTCTCTGCCAAG 59.611 60.000 20.34 0.00 37.86 3.61
110 119 0.758123 GAGGGATCTCTCTGCCAAGG 59.242 60.000 15.81 0.00 37.07 3.61
111 120 0.341258 AGGGATCTCTCTGCCAAGGA 59.659 55.000 0.00 0.00 0.00 3.36
112 121 1.207791 GGGATCTCTCTGCCAAGGAA 58.792 55.000 0.00 0.00 0.00 3.36
113 122 1.140652 GGGATCTCTCTGCCAAGGAAG 59.859 57.143 0.00 0.00 0.00 3.46
114 123 2.114616 GGATCTCTCTGCCAAGGAAGA 58.885 52.381 0.00 0.00 0.00 2.87
115 124 2.102925 GGATCTCTCTGCCAAGGAAGAG 59.897 54.545 16.77 16.77 46.76 2.85
198 207 1.971695 CTGGGTTTTGCGTCCTCCC 60.972 63.158 0.00 0.00 38.68 4.30
199 208 2.411765 CTGGGTTTTGCGTCCTCCCT 62.412 60.000 0.00 0.00 38.95 4.20
216 225 1.347817 CCTGAAGACGCGTTCTCTGC 61.348 60.000 15.53 5.15 31.02 4.26
272 281 3.112709 GCGTGTGGCGTCTTCCTC 61.113 66.667 0.00 0.00 43.66 3.71
288 297 1.068250 CTCCTTCTCGGGCCGATTC 59.932 63.158 31.23 0.00 34.61 2.52
413 423 1.346068 AGGATTCCTCGCAGATTAGCC 59.654 52.381 0.00 0.00 33.89 3.93
496 506 1.525619 GTGTCGGTGTTTAGTCAGCAC 59.474 52.381 0.00 0.00 35.85 4.40
577 592 2.482490 GCCGTCAAATCGTACCCAGTAT 60.482 50.000 0.00 0.00 0.00 2.12
580 595 4.178540 CGTCAAATCGTACCCAGTATTGT 58.821 43.478 0.00 0.00 0.00 2.71
581 596 5.342433 CGTCAAATCGTACCCAGTATTGTA 58.658 41.667 0.00 0.00 0.00 2.41
585 600 8.139989 GTCAAATCGTACCCAGTATTGTAGTAT 58.860 37.037 0.00 0.00 0.00 2.12
608 641 3.327757 TGATTGTTTGAGAGGCTGGTACT 59.672 43.478 0.00 0.00 0.00 2.73
609 642 4.530553 TGATTGTTTGAGAGGCTGGTACTA 59.469 41.667 0.00 0.00 0.00 1.82
610 643 4.537135 TTGTTTGAGAGGCTGGTACTAG 57.463 45.455 1.08 1.08 0.00 2.57
611 644 3.507411 TGTTTGAGAGGCTGGTACTAGT 58.493 45.455 8.16 0.00 0.00 2.57
612 645 4.669700 TGTTTGAGAGGCTGGTACTAGTA 58.330 43.478 8.16 0.00 0.00 1.82
613 646 4.461781 TGTTTGAGAGGCTGGTACTAGTAC 59.538 45.833 22.53 22.53 35.40 2.73
678 926 3.139565 CCCCGACTAGGCTAAGGC 58.860 66.667 0.00 0.00 39.21 4.35
685 933 3.445857 CGACTAGGCTAAGGCTTGTTAC 58.554 50.000 10.69 0.00 42.87 2.50
689 937 3.136009 AGGCTAAGGCTTGTTACGTTT 57.864 42.857 10.69 0.00 33.67 3.60
716 964 1.469079 GCCCATTCGCTGCGTTATTTT 60.469 47.619 22.48 0.00 0.00 1.82
732 1005 5.636543 CGTTATTTTAGGTCCACTTTCTCGT 59.363 40.000 0.00 0.00 0.00 4.18
754 1027 3.233355 GAAAGCTGCTTTCCCGAGA 57.767 52.632 34.12 0.00 42.61 4.04
756 1029 1.197949 GAAAGCTGCTTTCCCGAGAAC 59.802 52.381 34.12 15.02 42.61 3.01
757 1030 0.108585 AAGCTGCTTTCCCGAGAACA 59.891 50.000 9.53 0.00 0.00 3.18
859 1147 4.294232 TCGTGTTTAACCGTCGTGAATTA 58.706 39.130 6.04 0.00 0.00 1.40
894 1182 8.177119 TGTTCATCCTAAATTTTGTTGCTACT 57.823 30.769 0.00 0.00 0.00 2.57
899 1187 9.079833 CATCCTAAATTTTGTTGCTACTTCATG 57.920 33.333 0.00 0.00 0.00 3.07
903 1191 9.630098 CTAAATTTTGTTGCTACTTCATGTGAT 57.370 29.630 0.00 0.00 0.00 3.06
953 1241 3.251004 CACCAAAACACCTACTGCTTCTC 59.749 47.826 0.00 0.00 0.00 2.87
960 1248 4.826556 ACACCTACTGCTTCTCTGATTTC 58.173 43.478 0.00 0.00 0.00 2.17
996 1284 0.802607 GCGTCTCTTGGCTTCCGTAG 60.803 60.000 0.00 0.00 0.00 3.51
1144 1432 0.467384 ATCTGGATGGGTCTTCTGCG 59.533 55.000 0.00 0.00 0.00 5.18
1339 1627 9.293404 CCTATGATGTCACATTTGATTAGGATT 57.707 33.333 0.00 0.00 33.11 3.01
1386 1674 1.877443 CCTGCATGCATGATTCGATGA 59.123 47.619 30.64 1.94 0.00 2.92
1389 1677 4.155280 CCTGCATGCATGATTCGATGATTA 59.845 41.667 30.64 0.00 0.00 1.75
1409 1697 8.759481 TGATTAGGCCAACAACATAATTATGA 57.241 30.769 28.13 5.20 37.15 2.15
1493 1790 6.741992 TGTTGAGCTGAATAGTTTATGTGG 57.258 37.500 0.00 0.00 0.00 4.17
1502 1799 7.587757 GCTGAATAGTTTATGTGGCTTATTTCG 59.412 37.037 0.00 0.00 0.00 3.46
1524 1821 7.972832 TCGTGTTAATAATCTTGTTCTTGGT 57.027 32.000 0.00 0.00 0.00 3.67
1609 1906 4.759693 TGTATTCCAGGTTAGTTGCAACAG 59.240 41.667 30.11 12.51 0.00 3.16
1673 1970 3.222603 TGCCTCGCATGAATCTACTCTA 58.777 45.455 0.00 0.00 31.71 2.43
1683 1980 6.510317 GCATGAATCTACTCTAAAGGCGTTTC 60.510 42.308 7.81 0.00 0.00 2.78
1687 1984 7.660208 TGAATCTACTCTAAAGGCGTTTCTTTT 59.340 33.333 7.81 0.00 37.96 2.27
1693 1990 8.611654 ACTCTAAAGGCGTTTCTTTTGTATTA 57.388 30.769 7.81 0.00 37.96 0.98
1710 2007 8.534333 TTTGTATTACTGTCTTGAGCTAACTG 57.466 34.615 0.00 0.00 0.00 3.16
1720 2017 7.708051 TGTCTTGAGCTAACTGTCTATACATC 58.292 38.462 0.00 0.00 34.37 3.06
2083 2717 2.549754 GCGCATGCCACTAATCTATGTT 59.450 45.455 13.15 0.00 33.98 2.71
2095 2729 9.343103 CCACTAATCTATGTTAAGCTGTATACG 57.657 37.037 0.00 0.00 0.00 3.06
2155 2792 3.678548 GGTACTGCATTATACTTAGGCGC 59.321 47.826 0.00 0.00 0.00 6.53
2167 2804 2.377628 TTAGGCGCCTGCTAATCCCG 62.378 60.000 38.98 0.00 42.25 5.14
2175 2812 3.617263 CGCCTGCTAATCCCGTATTTATC 59.383 47.826 0.00 0.00 0.00 1.75
2176 2813 4.575885 GCCTGCTAATCCCGTATTTATCA 58.424 43.478 0.00 0.00 0.00 2.15
2182 2819 9.398170 CTGCTAATCCCGTATTTATCATTTTTG 57.602 33.333 0.00 0.00 0.00 2.44
2250 2887 0.886490 GCCACAGGGATATCAAGCCG 60.886 60.000 4.83 0.00 35.59 5.52
2305 2942 6.429078 TCATCTTCTGTTGGTCTCAAAATCAG 59.571 38.462 0.00 0.00 34.28 2.90
2329 2966 8.729756 CAGTCACATGTTTTTATCTGTGGATTA 58.270 33.333 0.00 0.00 39.51 1.75
2331 2968 9.341899 GTCACATGTTTTTATCTGTGGATTAAC 57.658 33.333 0.00 0.00 39.51 2.01
2364 3001 6.939622 ACTATAACTGTAGGTAAACCCACAC 58.060 40.000 0.00 0.00 36.42 3.82
2484 3121 3.812053 CAGAGCTCATATTTGGTGCTACC 59.188 47.826 17.77 0.00 39.22 3.18
2609 3246 4.010349 AGCCCTTAACAAATCAGCACTAC 58.990 43.478 0.00 0.00 0.00 2.73
2722 3360 9.524496 TCATCAAGGTAGTTAACAGTTCTAGTA 57.476 33.333 8.61 0.00 0.00 1.82
2735 3373 4.740695 CAGTTCTAGTACTTAGCAATCGGC 59.259 45.833 0.00 0.00 45.30 5.54
2807 3445 1.127567 TGCTGCAGGTCCTTGGTACT 61.128 55.000 17.12 0.00 0.00 2.73
3138 3776 6.441274 ACTTTTGCAATGATCTTGTGTACTG 58.559 36.000 0.00 0.00 0.00 2.74
3285 3923 2.696506 ACTTCAAGCCTAACGGTAAGC 58.303 47.619 0.00 0.00 0.00 3.09
3286 3924 2.007608 CTTCAAGCCTAACGGTAAGCC 58.992 52.381 0.00 0.00 0.00 4.35
3295 3933 0.251165 AACGGTAAGCCATGCAACCT 60.251 50.000 0.00 0.00 35.59 3.50
3378 4016 6.677781 TTTGTCACCTAGTCTTGTTTTCAG 57.322 37.500 0.00 0.00 0.00 3.02
3385 4023 5.163237 ACCTAGTCTTGTTTTCAGCACCTAA 60.163 40.000 0.00 0.00 0.00 2.69
3401 4039 8.367156 TCAGCACCTAATCTTATTTTTGCTTTT 58.633 29.630 0.00 0.00 36.96 2.27
3402 4040 8.437742 CAGCACCTAATCTTATTTTTGCTTTTG 58.562 33.333 0.00 0.00 36.96 2.44
3461 4099 1.204467 GCGGCAAAATTGATCCCAGAA 59.796 47.619 0.00 0.00 0.00 3.02
3464 4102 3.588955 GGCAAAATTGATCCCAGAACAC 58.411 45.455 0.00 0.00 0.00 3.32
3480 4118 2.433318 ACGCGAGAAAGCAGAGCC 60.433 61.111 15.93 0.00 36.85 4.70
3488 4126 3.228243 AAAGCAGAGCCCCCATGCA 62.228 57.895 0.00 0.00 42.45 3.96
3497 4135 0.896940 GCCCCCATGCATGACTATGG 60.897 60.000 28.31 18.70 42.77 2.74
3502 4140 3.150458 CCATGCATGACTATGGGATGT 57.850 47.619 28.31 0.00 40.11 3.06
3547 4186 1.129251 CATCGACAAGTGCGCATTTCT 59.871 47.619 15.91 2.28 0.00 2.52
3570 4209 1.984026 GGGATGTTGGTTGGGCAGG 60.984 63.158 0.00 0.00 0.00 4.85
3589 4228 1.699656 GCATGCGAGCGTGATGAACT 61.700 55.000 20.15 0.00 35.09 3.01
3590 4229 1.559831 CATGCGAGCGTGATGAACTA 58.440 50.000 11.55 0.00 35.09 2.24
3625 4264 3.119137 TGGAAGACGTGATGTATGACCAG 60.119 47.826 0.00 0.00 29.78 4.00
3703 4345 1.919816 TAACCGGTTCACCCTCCCC 60.920 63.158 26.16 0.00 0.00 4.81
3839 4482 6.531503 TTCCTAGTTTCTTGATCGTCAGAT 57.468 37.500 0.00 0.00 40.38 2.90
3867 4510 4.082733 GCCACCTTGTTTTAGATTCCTGTC 60.083 45.833 0.00 0.00 0.00 3.51
3868 4511 5.070001 CCACCTTGTTTTAGATTCCTGTCA 58.930 41.667 0.00 0.00 0.00 3.58
3876 4519 7.004086 TGTTTTAGATTCCTGTCATTGAAGGT 58.996 34.615 11.96 0.00 34.94 3.50
3877 4520 7.505585 TGTTTTAGATTCCTGTCATTGAAGGTT 59.494 33.333 11.96 4.82 34.94 3.50
3912 4559 2.098607 TGCAGTACTATGTACCTGTCGC 59.901 50.000 0.00 0.00 0.00 5.19
3928 4575 0.461548 TCGCTGGCTCCTATTGAGTG 59.538 55.000 0.00 0.00 43.48 3.51
3944 4591 1.131504 GAGTGGTTTGTTGCAACGTGA 59.868 47.619 23.79 10.25 0.00 4.35
3945 4592 1.132262 AGTGGTTTGTTGCAACGTGAG 59.868 47.619 23.79 0.00 0.00 3.51
3960 4607 4.732285 ACGTGAGATGATTTGTGTTCAC 57.268 40.909 0.00 0.00 33.44 3.18
3967 4614 6.770303 TGAGATGATTTGTGTTCACCTTGTTA 59.230 34.615 0.37 0.00 0.00 2.41
3988 4635 7.367285 TGTTATGGTTGTAGCTGATTTTGAAC 58.633 34.615 0.00 0.00 0.00 3.18
3992 4639 5.215160 GGTTGTAGCTGATTTTGAACAGTG 58.785 41.667 0.00 0.00 36.62 3.66
3996 4643 4.778534 AGCTGATTTTGAACAGTGGATG 57.221 40.909 0.00 0.00 36.62 3.51
4007 4654 2.498167 ACAGTGGATGTTTGACTCTGC 58.502 47.619 0.00 0.00 39.96 4.26
4016 4663 3.151554 TGTTTGACTCTGCTGCATGAAT 58.848 40.909 1.31 0.00 0.00 2.57
4023 4670 3.937706 ACTCTGCTGCATGAATCTGTAAC 59.062 43.478 1.31 0.00 0.00 2.50
4024 4671 3.937079 CTCTGCTGCATGAATCTGTAACA 59.063 43.478 1.31 0.00 0.00 2.41
4035 4682 7.255035 GCATGAATCTGTAACATATGCAACTCT 60.255 37.037 1.58 0.00 39.25 3.24
4038 4685 7.607607 TGAATCTGTAACATATGCAACTCTGTT 59.392 33.333 1.58 0.96 36.00 3.16
4039 4686 7.928307 ATCTGTAACATATGCAACTCTGTTT 57.072 32.000 1.58 0.00 34.02 2.83
4040 4687 7.132694 TCTGTAACATATGCAACTCTGTTTG 57.867 36.000 1.58 4.59 34.02 2.93
4041 4688 6.710295 TCTGTAACATATGCAACTCTGTTTGT 59.290 34.615 1.58 0.00 34.02 2.83
4044 4691 8.194104 TGTAACATATGCAACTCTGTTTGTTTT 58.806 29.630 1.58 0.00 34.02 2.43
4048 4695 8.413229 ACATATGCAACTCTGTTTGTTTTAAGT 58.587 29.630 1.58 0.00 0.00 2.24
4051 4698 7.954788 TGCAACTCTGTTTGTTTTAAGTTTT 57.045 28.000 0.00 0.00 0.00 2.43
4052 4699 8.013236 TGCAACTCTGTTTGTTTTAAGTTTTC 57.987 30.769 0.00 0.00 0.00 2.29
4053 4700 7.653713 TGCAACTCTGTTTGTTTTAAGTTTTCA 59.346 29.630 0.00 0.00 0.00 2.69
4057 4704 9.921637 ACTCTGTTTGTTTTAAGTTTTCATTGA 57.078 25.926 0.00 0.00 0.00 2.57
4065 4712 9.508642 TGTTTTAAGTTTTCATTGAAGGGTTTT 57.491 25.926 0.00 0.00 0.00 2.43
4071 4718 9.546428 AAGTTTTCATTGAAGGGTTTTCTTATG 57.454 29.630 0.00 0.00 0.00 1.90
4079 4726 5.833131 TGAAGGGTTTTCTTATGCAGTCTTT 59.167 36.000 0.00 0.00 0.00 2.52
4080 4727 6.323739 TGAAGGGTTTTCTTATGCAGTCTTTT 59.676 34.615 0.00 0.00 0.00 2.27
4081 4728 6.332735 AGGGTTTTCTTATGCAGTCTTTTC 57.667 37.500 0.00 0.00 0.00 2.29
4082 4729 5.243954 AGGGTTTTCTTATGCAGTCTTTTCC 59.756 40.000 0.00 0.00 0.00 3.13
4083 4730 5.243954 GGGTTTTCTTATGCAGTCTTTTCCT 59.756 40.000 0.00 0.00 0.00 3.36
4084 4731 6.239317 GGGTTTTCTTATGCAGTCTTTTCCTT 60.239 38.462 0.00 0.00 0.00 3.36
4085 4732 6.863645 GGTTTTCTTATGCAGTCTTTTCCTTC 59.136 38.462 0.00 0.00 0.00 3.46
4086 4733 7.255625 GGTTTTCTTATGCAGTCTTTTCCTTCT 60.256 37.037 0.00 0.00 0.00 2.85
4087 4734 6.808008 TTCTTATGCAGTCTTTTCCTTCTG 57.192 37.500 0.00 0.00 0.00 3.02
4088 4735 5.248640 TCTTATGCAGTCTTTTCCTTCTGG 58.751 41.667 0.00 0.00 0.00 3.86
4089 4736 3.795688 ATGCAGTCTTTTCCTTCTGGA 57.204 42.857 0.00 0.00 41.36 3.86
4090 4737 3.795688 TGCAGTCTTTTCCTTCTGGAT 57.204 42.857 0.00 0.00 42.81 3.41
4091 4738 4.104383 TGCAGTCTTTTCCTTCTGGATT 57.896 40.909 0.00 0.00 42.81 3.01
4092 4739 3.822735 TGCAGTCTTTTCCTTCTGGATTG 59.177 43.478 0.00 0.00 42.81 2.67
4093 4740 3.192212 GCAGTCTTTTCCTTCTGGATTGG 59.808 47.826 0.00 0.00 42.81 3.16
4094 4741 3.192212 CAGTCTTTTCCTTCTGGATTGGC 59.808 47.826 0.00 0.00 42.81 4.52
4095 4742 2.162408 GTCTTTTCCTTCTGGATTGGCG 59.838 50.000 0.00 0.00 42.81 5.69
4096 4743 2.039746 TCTTTTCCTTCTGGATTGGCGA 59.960 45.455 0.00 0.00 42.81 5.54
4097 4744 2.577606 TTTCCTTCTGGATTGGCGAA 57.422 45.000 0.00 0.00 42.81 4.70
4098 4745 2.806945 TTCCTTCTGGATTGGCGAAT 57.193 45.000 0.00 0.00 42.81 3.34
4099 4746 2.806945 TCCTTCTGGATTGGCGAATT 57.193 45.000 0.00 0.00 37.46 2.17
4100 4747 2.368439 TCCTTCTGGATTGGCGAATTG 58.632 47.619 0.00 0.00 37.46 2.32
4101 4748 1.202336 CCTTCTGGATTGGCGAATTGC 60.202 52.381 0.00 0.00 38.16 3.56
4102 4749 3.781841 CCTTCTGGATTGGCGAATTGCA 61.782 50.000 0.00 0.00 40.00 4.08
4103 4750 5.579570 CCTTCTGGATTGGCGAATTGCAG 62.580 52.174 0.00 1.36 40.00 4.41
4110 4757 4.759564 GCGAATTGCAGTGCTGAG 57.240 55.556 17.60 4.60 45.45 3.35
4111 4758 1.871772 GCGAATTGCAGTGCTGAGT 59.128 52.632 17.60 4.09 45.45 3.41
4112 4759 0.453950 GCGAATTGCAGTGCTGAGTG 60.454 55.000 17.60 4.83 45.45 3.51
4114 4761 0.109412 GAATTGCAGTGCTGAGTGCC 60.109 55.000 17.60 0.00 46.58 5.01
4115 4762 1.859427 AATTGCAGTGCTGAGTGCCG 61.859 55.000 17.60 0.00 46.58 5.69
4116 4763 4.994471 TGCAGTGCTGAGTGCCGG 62.994 66.667 17.60 0.00 46.58 6.13
4135 4782 1.602311 GCATGGCCAGAGATAGGTTG 58.398 55.000 13.05 1.56 0.00 3.77
4136 4783 1.133976 GCATGGCCAGAGATAGGTTGT 60.134 52.381 13.05 0.00 0.00 3.32
4137 4784 2.684927 GCATGGCCAGAGATAGGTTGTT 60.685 50.000 13.05 0.00 0.00 2.83
4138 4785 3.624777 CATGGCCAGAGATAGGTTGTTT 58.375 45.455 13.05 0.00 0.00 2.83
4139 4786 3.071874 TGGCCAGAGATAGGTTGTTTG 57.928 47.619 0.00 0.00 0.00 2.93
4140 4787 2.290896 TGGCCAGAGATAGGTTGTTTGG 60.291 50.000 0.00 0.00 0.00 3.28
4141 4788 2.369394 GCCAGAGATAGGTTGTTTGGG 58.631 52.381 0.00 0.00 0.00 4.12
4142 4789 2.026262 GCCAGAGATAGGTTGTTTGGGA 60.026 50.000 0.00 0.00 0.00 4.37
4143 4790 3.561313 GCCAGAGATAGGTTGTTTGGGAA 60.561 47.826 0.00 0.00 0.00 3.97
4144 4791 4.265073 CCAGAGATAGGTTGTTTGGGAAG 58.735 47.826 0.00 0.00 0.00 3.46
4145 4792 4.263506 CCAGAGATAGGTTGTTTGGGAAGT 60.264 45.833 0.00 0.00 0.00 3.01
4146 4793 5.316987 CAGAGATAGGTTGTTTGGGAAGTT 58.683 41.667 0.00 0.00 0.00 2.66
4147 4794 5.770162 CAGAGATAGGTTGTTTGGGAAGTTT 59.230 40.000 0.00 0.00 0.00 2.66
4148 4795 6.004574 AGAGATAGGTTGTTTGGGAAGTTTC 58.995 40.000 0.00 0.00 0.00 2.78
4149 4796 5.077564 AGATAGGTTGTTTGGGAAGTTTCC 58.922 41.667 2.17 2.17 46.82 3.13
4162 4809 5.718649 GGAAGTTTCCAAAAGTTTGAAGC 57.281 39.130 6.03 0.00 46.76 3.86
4163 4810 5.175127 GGAAGTTTCCAAAAGTTTGAAGCA 58.825 37.500 6.03 0.00 46.76 3.91
4164 4811 5.817296 GGAAGTTTCCAAAAGTTTGAAGCAT 59.183 36.000 6.03 0.00 46.76 3.79
4165 4812 6.983890 GGAAGTTTCCAAAAGTTTGAAGCATA 59.016 34.615 6.03 0.00 46.76 3.14
4166 4813 7.042725 GGAAGTTTCCAAAAGTTTGAAGCATAC 60.043 37.037 6.03 0.00 46.76 2.39
4167 4814 6.280643 AGTTTCCAAAAGTTTGAAGCATACC 58.719 36.000 5.34 0.00 40.55 2.73
4168 4815 4.864704 TCCAAAAGTTTGAAGCATACCC 57.135 40.909 5.34 0.00 40.55 3.69
4169 4816 4.219115 TCCAAAAGTTTGAAGCATACCCA 58.781 39.130 5.34 0.00 40.55 4.51
4170 4817 4.651503 TCCAAAAGTTTGAAGCATACCCAA 59.348 37.500 5.34 0.00 40.55 4.12
4171 4818 4.990426 CCAAAAGTTTGAAGCATACCCAAG 59.010 41.667 5.34 0.00 40.55 3.61
4172 4819 3.942130 AAGTTTGAAGCATACCCAAGC 57.058 42.857 0.00 0.00 0.00 4.01
4173 4820 1.812571 AGTTTGAAGCATACCCAAGCG 59.187 47.619 0.00 0.00 35.48 4.68
4174 4821 0.525761 TTTGAAGCATACCCAAGCGC 59.474 50.000 0.00 0.00 35.48 5.92
4175 4822 0.607762 TTGAAGCATACCCAAGCGCA 60.608 50.000 11.47 0.00 35.48 6.09
4176 4823 1.305219 TGAAGCATACCCAAGCGCAC 61.305 55.000 11.47 0.00 35.48 5.34
4177 4824 2.309764 GAAGCATACCCAAGCGCACG 62.310 60.000 11.47 0.00 35.48 5.34
4178 4825 2.796483 AAGCATACCCAAGCGCACGA 62.796 55.000 11.47 0.00 35.48 4.35
4179 4826 2.180204 GCATACCCAAGCGCACGAT 61.180 57.895 11.47 0.00 0.00 3.73
4180 4827 1.934463 CATACCCAAGCGCACGATC 59.066 57.895 11.47 0.00 0.00 3.69
4181 4828 0.530650 CATACCCAAGCGCACGATCT 60.531 55.000 11.47 0.00 0.00 2.75
4182 4829 0.530650 ATACCCAAGCGCACGATCTG 60.531 55.000 11.47 0.00 0.00 2.90
4183 4830 3.869272 CCCAAGCGCACGATCTGC 61.869 66.667 11.47 6.98 43.21 4.26
4194 4841 4.075763 GCACGATCTGCATCCAATTATC 57.924 45.455 10.95 0.00 46.29 1.75
4195 4842 3.750130 GCACGATCTGCATCCAATTATCT 59.250 43.478 10.95 0.00 46.29 1.98
4196 4843 4.214971 GCACGATCTGCATCCAATTATCTT 59.785 41.667 10.95 0.00 46.29 2.40
4197 4844 5.278169 GCACGATCTGCATCCAATTATCTTT 60.278 40.000 10.95 0.00 46.29 2.52
4198 4845 6.140786 CACGATCTGCATCCAATTATCTTTG 58.859 40.000 0.00 0.00 0.00 2.77
4199 4846 5.240183 ACGATCTGCATCCAATTATCTTTGG 59.760 40.000 0.00 0.00 46.28 3.28
4234 4881 6.783708 AAAAACCCAGTCTTGTATGTTGAA 57.216 33.333 0.00 0.00 0.00 2.69
4235 4882 6.976934 AAAACCCAGTCTTGTATGTTGAAT 57.023 33.333 0.00 0.00 0.00 2.57
4236 4883 6.575162 AAACCCAGTCTTGTATGTTGAATC 57.425 37.500 0.00 0.00 0.00 2.52
4237 4884 4.253685 ACCCAGTCTTGTATGTTGAATCG 58.746 43.478 0.00 0.00 0.00 3.34
4238 4885 4.020573 ACCCAGTCTTGTATGTTGAATCGA 60.021 41.667 0.00 0.00 0.00 3.59
4239 4886 5.118990 CCCAGTCTTGTATGTTGAATCGAT 58.881 41.667 0.00 0.00 0.00 3.59
4240 4887 6.127168 ACCCAGTCTTGTATGTTGAATCGATA 60.127 38.462 0.00 0.00 0.00 2.92
4241 4888 6.201044 CCCAGTCTTGTATGTTGAATCGATAC 59.799 42.308 0.00 0.00 0.00 2.24
4242 4889 6.980978 CCAGTCTTGTATGTTGAATCGATACT 59.019 38.462 0.00 0.00 0.00 2.12
4243 4890 7.168302 CCAGTCTTGTATGTTGAATCGATACTC 59.832 40.741 0.00 0.00 0.00 2.59
4244 4891 7.168302 CAGTCTTGTATGTTGAATCGATACTCC 59.832 40.741 0.00 0.00 0.00 3.85
4245 4892 6.421202 GTCTTGTATGTTGAATCGATACTCCC 59.579 42.308 0.00 0.00 0.00 4.30
4246 4893 4.866921 TGTATGTTGAATCGATACTCCCG 58.133 43.478 0.00 0.00 0.00 5.14
4247 4894 4.340097 TGTATGTTGAATCGATACTCCCGT 59.660 41.667 0.00 0.00 0.00 5.28
4248 4895 3.880047 TGTTGAATCGATACTCCCGTT 57.120 42.857 0.00 0.00 0.00 4.44
4249 4896 4.987408 TGTTGAATCGATACTCCCGTTA 57.013 40.909 0.00 0.00 0.00 3.18
4250 4897 5.524971 TGTTGAATCGATACTCCCGTTAT 57.475 39.130 0.00 0.00 0.00 1.89
4251 4898 6.638096 TGTTGAATCGATACTCCCGTTATA 57.362 37.500 0.00 0.00 0.00 0.98
4252 4899 6.441274 TGTTGAATCGATACTCCCGTTATAC 58.559 40.000 0.00 0.00 0.00 1.47
4253 4900 6.039605 TGTTGAATCGATACTCCCGTTATACA 59.960 38.462 0.00 0.00 0.00 2.29
4254 4901 6.638096 TGAATCGATACTCCCGTTATACAA 57.362 37.500 0.00 0.00 0.00 2.41
4255 4902 7.041635 TGAATCGATACTCCCGTTATACAAA 57.958 36.000 0.00 0.00 0.00 2.83
4256 4903 6.919662 TGAATCGATACTCCCGTTATACAAAC 59.080 38.462 0.00 0.00 0.00 2.93
4257 4904 5.833406 TCGATACTCCCGTTATACAAACA 57.167 39.130 0.00 0.00 0.00 2.83
4258 4905 5.581605 TCGATACTCCCGTTATACAAACAC 58.418 41.667 0.00 0.00 0.00 3.32
4259 4906 4.741676 CGATACTCCCGTTATACAAACACC 59.258 45.833 0.00 0.00 0.00 4.16
4260 4907 5.663456 GATACTCCCGTTATACAAACACCA 58.337 41.667 0.00 0.00 0.00 4.17
4261 4908 3.934068 ACTCCCGTTATACAAACACCAG 58.066 45.455 0.00 0.00 0.00 4.00
4262 4909 3.325716 ACTCCCGTTATACAAACACCAGT 59.674 43.478 0.00 0.00 0.00 4.00
4263 4910 3.929094 TCCCGTTATACAAACACCAGTC 58.071 45.455 0.00 0.00 0.00 3.51
4264 4911 3.579586 TCCCGTTATACAAACACCAGTCT 59.420 43.478 0.00 0.00 0.00 3.24
4265 4912 3.682858 CCCGTTATACAAACACCAGTCTG 59.317 47.826 0.00 0.00 0.00 3.51
4266 4913 3.682858 CCGTTATACAAACACCAGTCTGG 59.317 47.826 17.88 17.88 45.02 3.86
4267 4914 4.561938 CCGTTATACAAACACCAGTCTGGA 60.562 45.833 26.18 0.82 40.96 3.86
4268 4915 4.992319 CGTTATACAAACACCAGTCTGGAA 59.008 41.667 26.18 2.80 40.96 3.53
4269 4916 5.120208 CGTTATACAAACACCAGTCTGGAAG 59.880 44.000 26.18 18.34 40.96 3.46
4270 4917 4.974645 ATACAAACACCAGTCTGGAAGA 57.025 40.909 26.18 3.66 40.96 2.87
4281 4928 2.058593 TCTGGAAGATGCTCTAGCGA 57.941 50.000 0.00 0.00 40.90 4.93
4282 4929 1.952990 TCTGGAAGATGCTCTAGCGAG 59.047 52.381 0.00 0.00 40.90 5.03
4283 4930 1.952990 CTGGAAGATGCTCTAGCGAGA 59.047 52.381 0.00 0.00 39.70 4.04
4284 4931 2.030893 CTGGAAGATGCTCTAGCGAGAG 60.031 54.545 18.59 18.59 44.79 3.20
4285 4932 4.303176 CTGGAAGATGCTCTAGCGAGAGA 61.303 52.174 25.95 12.20 44.79 3.10
4286 4933 6.094924 CTGGAAGATGCTCTAGCGAGAGAG 62.095 54.167 25.95 16.68 44.79 3.20
4295 4942 4.640789 TCTAGCGAGAGAGTTTTGGATC 57.359 45.455 0.00 0.00 0.00 3.36
4296 4943 2.285827 AGCGAGAGAGTTTTGGATCG 57.714 50.000 0.00 0.00 0.00 3.69
4297 4944 1.819288 AGCGAGAGAGTTTTGGATCGA 59.181 47.619 0.00 0.00 32.13 3.59
4298 4945 1.921230 GCGAGAGAGTTTTGGATCGAC 59.079 52.381 0.00 0.00 32.13 4.20
4299 4946 2.177977 CGAGAGAGTTTTGGATCGACG 58.822 52.381 0.00 0.00 32.13 5.12
4300 4947 2.159558 CGAGAGAGTTTTGGATCGACGA 60.160 50.000 0.00 0.00 32.13 4.20
4301 4948 3.669824 CGAGAGAGTTTTGGATCGACGAA 60.670 47.826 0.00 0.00 32.13 3.85
4302 4949 4.425520 GAGAGAGTTTTGGATCGACGAAT 58.574 43.478 0.00 0.00 0.00 3.34
4303 4950 4.425520 AGAGAGTTTTGGATCGACGAATC 58.574 43.478 0.00 0.11 0.00 2.52
4304 4951 4.082190 AGAGAGTTTTGGATCGACGAATCA 60.082 41.667 0.00 0.01 0.00 2.57
4305 4952 4.177026 AGAGTTTTGGATCGACGAATCAG 58.823 43.478 0.00 0.00 0.00 2.90
4306 4953 4.082190 AGAGTTTTGGATCGACGAATCAGA 60.082 41.667 0.00 0.00 0.00 3.27
4307 4954 4.177026 AGTTTTGGATCGACGAATCAGAG 58.823 43.478 0.00 0.00 0.00 3.35
4308 4955 2.209838 TTGGATCGACGAATCAGAGC 57.790 50.000 0.00 0.00 0.00 4.09
4309 4956 1.102978 TGGATCGACGAATCAGAGCA 58.897 50.000 0.00 0.00 0.00 4.26
4310 4957 1.683385 TGGATCGACGAATCAGAGCAT 59.317 47.619 0.00 0.00 0.00 3.79
4311 4958 2.287849 TGGATCGACGAATCAGAGCATC 60.288 50.000 0.00 0.00 0.00 3.91
4322 4969 4.521062 GAGCATCTCCAGCCGCGT 62.521 66.667 4.92 0.00 0.00 6.01
4323 4970 4.521062 AGCATCTCCAGCCGCGTC 62.521 66.667 4.92 0.00 0.00 5.19
4325 4972 4.899239 CATCTCCAGCCGCGTCCC 62.899 72.222 4.92 0.00 0.00 4.46
4384 5031 4.579127 AAAAACAGCCCAGTCGCT 57.421 50.000 0.00 0.00 40.65 4.93
4385 5032 2.331265 AAAAACAGCCCAGTCGCTC 58.669 52.632 0.00 0.00 36.82 5.03
4386 5033 1.172812 AAAAACAGCCCAGTCGCTCC 61.173 55.000 0.00 0.00 36.82 4.70
4387 5034 3.553095 AAACAGCCCAGTCGCTCCC 62.553 63.158 0.00 0.00 36.82 4.30
4390 5037 4.075793 AGCCCAGTCGCTCCCCTA 62.076 66.667 0.00 0.00 32.06 3.53
4391 5038 3.541713 GCCCAGTCGCTCCCCTAG 61.542 72.222 0.00 0.00 0.00 3.02
4392 5039 2.840102 CCCAGTCGCTCCCCTAGG 60.840 72.222 0.06 0.06 0.00 3.02
4393 5040 2.279073 CCAGTCGCTCCCCTAGGA 59.721 66.667 11.48 0.00 41.08 2.94
4394 5041 2.128507 CCAGTCGCTCCCCTAGGAC 61.129 68.421 11.48 0.00 37.19 3.85
4395 5042 2.124236 AGTCGCTCCCCTAGGACG 60.124 66.667 11.48 8.69 37.19 4.79
4396 5043 2.124403 GTCGCTCCCCTAGGACGA 60.124 66.667 11.48 11.02 40.80 4.20
4397 5044 2.124403 TCGCTCCCCTAGGACGAC 60.124 66.667 11.48 0.00 39.31 4.34
4398 5045 3.584052 CGCTCCCCTAGGACGACG 61.584 72.222 11.48 5.05 37.19 5.12
4399 5046 2.124403 GCTCCCCTAGGACGACGA 60.124 66.667 11.48 0.00 37.19 4.20
4400 5047 1.751927 GCTCCCCTAGGACGACGAA 60.752 63.158 11.48 0.00 37.19 3.85
4401 5048 1.318158 GCTCCCCTAGGACGACGAAA 61.318 60.000 11.48 0.00 37.19 3.46
4402 5049 1.180029 CTCCCCTAGGACGACGAAAA 58.820 55.000 11.48 0.00 37.19 2.29
4403 5050 1.134560 CTCCCCTAGGACGACGAAAAG 59.865 57.143 11.48 0.00 37.19 2.27
4404 5051 0.459759 CCCCTAGGACGACGAAAAGC 60.460 60.000 11.48 0.00 33.47 3.51
4406 5053 1.411493 CCTAGGACGACGAAAAGCGC 61.411 60.000 1.05 0.00 46.04 5.92
4407 5054 1.411493 CTAGGACGACGAAAAGCGCC 61.411 60.000 2.29 0.00 46.04 6.53
4411 5058 3.708734 CGACGAAAAGCGCCGGTT 61.709 61.111 2.29 0.00 42.29 4.44
4412 5059 2.172659 GACGAAAAGCGCCGGTTC 59.827 61.111 2.29 4.36 46.04 3.62
4489 5136 4.388499 GGCTCCGACGCAAGGGAA 62.388 66.667 0.00 0.00 46.39 3.97
4490 5137 2.358247 GCTCCGACGCAAGGGAAA 60.358 61.111 0.00 0.00 46.39 3.13
4491 5138 1.964373 GCTCCGACGCAAGGGAAAA 60.964 57.895 0.00 0.00 46.39 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.393673 GGCTTGCCCTTTCCTCTCTC 60.394 60.000 0.00 0.00 0.00 3.20
34 35 1.136329 TGGCTTGCCCTTTCCTCTCT 61.136 55.000 9.35 0.00 0.00 3.10
35 36 0.251341 TTGGCTTGCCCTTTCCTCTC 60.251 55.000 9.35 0.00 0.00 3.20
36 37 0.540597 GTTGGCTTGCCCTTTCCTCT 60.541 55.000 9.35 0.00 0.00 3.69
39 40 2.583441 GGGTTGGCTTGCCCTTTCC 61.583 63.158 9.35 6.15 41.63 3.13
40 41 1.820010 CTGGGTTGGCTTGCCCTTTC 61.820 60.000 9.35 0.00 45.06 2.62
41 42 1.838396 CTGGGTTGGCTTGCCCTTT 60.838 57.895 9.35 0.00 45.06 3.11
42 43 2.203684 CTGGGTTGGCTTGCCCTT 60.204 61.111 9.35 0.00 45.06 3.95
47 48 2.500714 TTGCAGCTGGGTTGGCTTG 61.501 57.895 17.12 0.00 38.03 4.01
91 100 0.758123 CCTTGGCAGAGAGATCCCTC 59.242 60.000 0.00 0.00 39.72 4.30
94 103 2.102925 CTCTTCCTTGGCAGAGAGATCC 59.897 54.545 10.15 0.00 39.21 3.36
106 115 1.273552 ACCTCCTCCTCCTCTTCCTTG 60.274 57.143 0.00 0.00 0.00 3.61
107 116 1.097722 ACCTCCTCCTCCTCTTCCTT 58.902 55.000 0.00 0.00 0.00 3.36
108 117 2.003247 TACCTCCTCCTCCTCTTCCT 57.997 55.000 0.00 0.00 0.00 3.36
109 118 2.178106 TCATACCTCCTCCTCCTCTTCC 59.822 54.545 0.00 0.00 0.00 3.46
110 119 3.603965 TCATACCTCCTCCTCCTCTTC 57.396 52.381 0.00 0.00 0.00 2.87
111 120 4.488770 GATTCATACCTCCTCCTCCTCTT 58.511 47.826 0.00 0.00 0.00 2.85
112 121 3.499563 CGATTCATACCTCCTCCTCCTCT 60.500 52.174 0.00 0.00 0.00 3.69
113 122 2.823154 CGATTCATACCTCCTCCTCCTC 59.177 54.545 0.00 0.00 0.00 3.71
114 123 2.883026 CGATTCATACCTCCTCCTCCT 58.117 52.381 0.00 0.00 0.00 3.69
115 124 1.273886 GCGATTCATACCTCCTCCTCC 59.726 57.143 0.00 0.00 0.00 4.30
148 157 0.727398 CCAAATCGGCGAAGAAGGAC 59.273 55.000 15.93 0.00 0.00 3.85
149 158 0.323629 ACCAAATCGGCGAAGAAGGA 59.676 50.000 15.93 0.00 39.03 3.36
198 207 0.387878 AGCAGAGAACGCGTCTTCAG 60.388 55.000 14.44 11.46 36.41 3.02
199 208 0.387367 GAGCAGAGAACGCGTCTTCA 60.387 55.000 14.44 0.00 36.41 3.02
272 281 0.530870 GAAGAATCGGCCCGAGAAGG 60.531 60.000 13.12 0.00 39.91 3.46
413 423 0.370273 CAACGCCTCGGAGAAAATCG 59.630 55.000 6.58 4.60 34.09 3.34
496 506 4.053067 GTTCGTACGAGTGCTCCG 57.947 61.111 18.64 0.00 0.00 4.63
577 592 7.119699 CAGCCTCTCAAACAATCAATACTACAA 59.880 37.037 0.00 0.00 0.00 2.41
580 595 6.115446 CCAGCCTCTCAAACAATCAATACTA 58.885 40.000 0.00 0.00 0.00 1.82
581 596 4.946157 CCAGCCTCTCAAACAATCAATACT 59.054 41.667 0.00 0.00 0.00 2.12
585 600 3.228188 ACCAGCCTCTCAAACAATCAA 57.772 42.857 0.00 0.00 0.00 2.57
613 646 0.672342 GGGCATCAATAGCTGCAAGG 59.328 55.000 1.02 0.00 38.59 3.61
620 653 2.360165 CTGTTTGGAGGGCATCAATAGC 59.640 50.000 0.08 0.00 0.00 2.97
672 920 3.551551 GCACAAACGTAACAAGCCTTAG 58.448 45.455 0.00 0.00 0.00 2.18
674 922 1.268335 CGCACAAACGTAACAAGCCTT 60.268 47.619 0.00 0.00 0.00 4.35
678 926 1.658968 GCTCGCACAAACGTAACAAG 58.341 50.000 0.00 0.00 0.00 3.16
685 933 1.154225 GAATGGGCTCGCACAAACG 60.154 57.895 0.00 0.00 30.82 3.60
751 1024 4.177229 GCTCAGCGACCTGTTCTC 57.823 61.111 0.00 0.00 40.09 2.87
859 1147 4.574674 TTAGGATGAACAAGCCAGATGT 57.425 40.909 0.00 0.00 0.00 3.06
894 1182 6.391537 CAATGACCAACATCAATCACATGAA 58.608 36.000 0.00 0.00 38.38 2.57
899 1187 5.587388 ATCCAATGACCAACATCAATCAC 57.413 39.130 0.00 0.00 38.38 3.06
903 1191 4.040095 TGCAAATCCAATGACCAACATCAA 59.960 37.500 0.00 0.00 38.38 2.57
953 1241 0.730840 TCAGCAGCGCATGAAATCAG 59.269 50.000 11.47 0.00 0.00 2.90
960 1248 2.326897 CCGATTCAGCAGCGCATG 59.673 61.111 11.47 5.44 0.00 4.06
996 1284 1.156645 CGCCTACTGAAGCCATCTGC 61.157 60.000 0.00 0.00 41.71 4.26
1120 1408 0.833287 AAGACCCATCCAGATGACGG 59.167 55.000 9.24 5.44 41.20 4.79
1174 1462 4.816385 TCATTCAAGCCAATCGTTAGGATC 59.184 41.667 0.00 0.00 33.02 3.36
1308 1596 6.990341 TCAAATGTGACATCATAGGAACAG 57.010 37.500 0.00 0.00 0.00 3.16
1339 1627 4.005650 CAGATGAGAACAAAAGGCTGCTA 58.994 43.478 0.00 0.00 0.00 3.49
1386 1674 7.284489 ACGTCATAATTATGTTGTTGGCCTAAT 59.716 33.333 21.89 0.00 35.26 1.73
1389 1677 4.947388 ACGTCATAATTATGTTGTTGGCCT 59.053 37.500 21.89 0.65 35.26 5.19
1409 1697 3.377172 GGCATTTAGGACATTTAGCACGT 59.623 43.478 0.00 0.00 0.00 4.49
1502 1799 7.865385 TGCAACCAAGAACAAGATTATTAACAC 59.135 33.333 0.00 0.00 0.00 3.32
1609 1906 7.308830 CCAATAAATAATAGACCAGCCTGAAGC 60.309 40.741 0.00 0.00 44.25 3.86
1673 1970 7.012989 AGACAGTAATACAAAAGAAACGCCTTT 59.987 33.333 0.00 0.00 37.94 3.11
1683 1980 9.209175 AGTTAGCTCAAGACAGTAATACAAAAG 57.791 33.333 0.00 0.00 0.00 2.27
1687 1984 7.176865 AGACAGTTAGCTCAAGACAGTAATACA 59.823 37.037 0.00 0.00 0.00 2.29
1693 1990 6.659668 TGTATAGACAGTTAGCTCAAGACAGT 59.340 38.462 0.00 0.00 0.00 3.55
1744 2041 9.890629 AGTACATAGCAATCACAAGAAAATCTA 57.109 29.630 0.00 0.00 0.00 1.98
1766 2400 5.736813 TCCATGTACACCCAACATTAGTAC 58.263 41.667 0.00 0.00 35.39 2.73
2083 2717 8.868522 ATATTACCTGGTACGTATACAGCTTA 57.131 34.615 19.16 12.14 32.40 3.09
2155 2792 7.687941 AAATGATAAATACGGGATTAGCAGG 57.312 36.000 0.00 0.00 31.73 4.85
2175 2812 5.829924 AGCCCTACATATCTGTCCAAAAATG 59.170 40.000 0.00 0.00 36.79 2.32
2176 2813 6.018433 AGCCCTACATATCTGTCCAAAAAT 57.982 37.500 0.00 0.00 36.79 1.82
2182 2819 2.564947 CCAGAGCCCTACATATCTGTCC 59.435 54.545 0.00 0.00 37.97 4.02
2250 2887 4.970662 TCAGCATACCAGAAGATTTTGC 57.029 40.909 0.00 0.00 0.00 3.68
2305 2942 9.341899 GTTAATCCACAGATAAAAACATGTGAC 57.658 33.333 0.00 0.00 44.56 3.67
2364 3001 1.600957 CACAGTTTCAGCTGGTGAGTG 59.399 52.381 15.13 14.56 40.59 3.51
2433 3070 7.095270 CCCTATAGTATCGGGAACAAATGTAC 58.905 42.308 13.50 0.00 40.55 2.90
2484 3121 3.179830 GTCAATGGCTGTAGTGTACTCG 58.820 50.000 0.00 0.00 0.00 4.18
2571 3208 2.240667 AGGGCTACATTCAAGATGCACT 59.759 45.455 0.00 0.00 0.00 4.40
2609 3246 7.609760 TGTAAGCCAATATGAACTAACAGTG 57.390 36.000 0.00 0.00 0.00 3.66
2807 3445 6.951198 TGCATTTAATTTCTTCCCTTGTAGGA 59.049 34.615 0.00 0.00 37.67 2.94
2918 3556 7.214381 TGATATGCACCAATACCTAACAGTAC 58.786 38.462 0.00 0.00 0.00 2.73
3081 3719 6.000219 AGTGCAGTATTCTCTGTGTTTCAAT 59.000 36.000 0.00 0.00 37.70 2.57
3285 3923 4.871557 CCACAAATAATCAAGGTTGCATGG 59.128 41.667 0.00 0.00 0.00 3.66
3286 3924 5.349270 CACCACAAATAATCAAGGTTGCATG 59.651 40.000 0.00 0.00 0.00 4.06
3295 3933 2.830923 CCCAGCCACCACAAATAATCAA 59.169 45.455 0.00 0.00 0.00 2.57
3361 3999 3.136626 AGGTGCTGAAAACAAGACTAGGT 59.863 43.478 0.00 0.00 0.00 3.08
3365 4003 5.625150 AGATTAGGTGCTGAAAACAAGACT 58.375 37.500 0.00 0.00 0.00 3.24
3371 4009 8.435430 GCAAAAATAAGATTAGGTGCTGAAAAC 58.565 33.333 0.00 0.00 0.00 2.43
3378 4016 7.387673 ACCAAAAGCAAAAATAAGATTAGGTGC 59.612 33.333 0.00 0.00 0.00 5.01
3385 4023 7.992608 AGGACAAACCAAAAGCAAAAATAAGAT 59.007 29.630 0.00 0.00 42.04 2.40
3395 4033 3.011566 TCTGAGGACAAACCAAAAGCA 57.988 42.857 0.00 0.00 42.04 3.91
3401 4039 3.924114 TTCAGTTCTGAGGACAAACCA 57.076 42.857 0.00 0.00 42.04 3.67
3402 4040 3.565902 CCTTTCAGTTCTGAGGACAAACC 59.434 47.826 0.00 0.00 39.35 3.27
3461 4099 2.024319 GCTCTGCTTTCTCGCGTGT 61.024 57.895 5.77 0.00 0.00 4.49
3464 4102 3.191539 GGGCTCTGCTTTCTCGCG 61.192 66.667 0.00 0.00 0.00 5.87
3488 4126 5.431765 GTGAGACAAACATCCCATAGTCAT 58.568 41.667 0.00 0.00 0.00 3.06
3497 4135 1.986378 CGACTCGTGAGACAAACATCC 59.014 52.381 3.44 0.00 35.39 3.51
3502 4140 1.406180 TCCAACGACTCGTGAGACAAA 59.594 47.619 4.50 0.00 39.99 2.83
3547 4186 1.773635 CCAACCAACATCCCCAGGA 59.226 57.895 0.00 0.00 35.55 3.86
3570 4209 1.297158 GTTCATCACGCTCGCATGC 60.297 57.895 7.91 7.91 0.00 4.06
3589 4228 7.557724 TCACGTCTTCCAACAACCATAATATA 58.442 34.615 0.00 0.00 0.00 0.86
3590 4229 6.411376 TCACGTCTTCCAACAACCATAATAT 58.589 36.000 0.00 0.00 0.00 1.28
3625 4264 0.535102 CACAGGTCAACAGGGTGGAC 60.535 60.000 0.00 0.00 35.88 4.02
3703 4345 1.405821 CTCAGGCGAGGGTTAGTACAG 59.594 57.143 0.00 0.00 35.44 2.74
3839 4482 2.920524 TCTAAAACAAGGTGGCACGAA 58.079 42.857 12.17 0.00 0.00 3.85
3867 4510 4.853924 AGCAACAGGTAAACCTTCAATG 57.146 40.909 0.00 0.00 46.09 2.82
3868 4511 6.572314 GCAATAGCAACAGGTAAACCTTCAAT 60.572 38.462 0.00 0.00 42.33 2.57
3890 4533 3.428452 GCGACAGGTACATAGTACTGCAA 60.428 47.826 5.39 0.00 34.40 4.08
3906 4552 0.461548 TCAATAGGAGCCAGCGACAG 59.538 55.000 0.00 0.00 0.00 3.51
3928 4575 2.032799 TCATCTCACGTTGCAACAAACC 59.967 45.455 28.01 1.98 0.00 3.27
3944 4591 7.309377 CCATAACAAGGTGAACACAAATCATCT 60.309 37.037 7.25 0.00 39.92 2.90
3945 4592 6.808212 CCATAACAAGGTGAACACAAATCATC 59.192 38.462 7.25 0.00 0.00 2.92
3960 4607 6.515272 AAATCAGCTACAACCATAACAAGG 57.485 37.500 0.00 0.00 0.00 3.61
3967 4614 5.536161 ACTGTTCAAAATCAGCTACAACCAT 59.464 36.000 0.00 0.00 35.37 3.55
3988 4635 2.483106 CAGCAGAGTCAAACATCCACTG 59.517 50.000 0.00 0.00 0.00 3.66
3992 4639 1.527034 TGCAGCAGAGTCAAACATCC 58.473 50.000 0.00 0.00 0.00 3.51
3996 4643 3.439476 AGATTCATGCAGCAGAGTCAAAC 59.561 43.478 0.00 0.00 0.00 2.93
4000 4647 2.630158 ACAGATTCATGCAGCAGAGTC 58.370 47.619 0.00 5.37 0.00 3.36
4007 4654 6.308371 TGCATATGTTACAGATTCATGCAG 57.692 37.500 13.38 0.00 41.53 4.41
4016 4663 6.710295 ACAAACAGAGTTGCATATGTTACAGA 59.290 34.615 4.29 0.00 34.92 3.41
4023 4670 8.801715 ACTTAAAACAAACAGAGTTGCATATG 57.198 30.769 0.00 0.00 31.29 1.78
4024 4671 9.816354 AAACTTAAAACAAACAGAGTTGCATAT 57.184 25.926 0.00 0.00 31.29 1.78
4035 4682 8.940952 CCCTTCAATGAAAACTTAAAACAAACA 58.059 29.630 0.00 0.00 0.00 2.83
4038 4685 9.508642 AAACCCTTCAATGAAAACTTAAAACAA 57.491 25.926 0.00 0.00 0.00 2.83
4039 4686 9.508642 AAAACCCTTCAATGAAAACTTAAAACA 57.491 25.926 0.00 0.00 0.00 2.83
4040 4687 9.982291 GAAAACCCTTCAATGAAAACTTAAAAC 57.018 29.630 0.00 0.00 0.00 2.43
4041 4688 9.952030 AGAAAACCCTTCAATGAAAACTTAAAA 57.048 25.926 0.00 0.00 0.00 1.52
4048 4695 7.504403 TGCATAAGAAAACCCTTCAATGAAAA 58.496 30.769 0.00 0.00 0.00 2.29
4051 4698 5.774690 ACTGCATAAGAAAACCCTTCAATGA 59.225 36.000 0.00 0.00 0.00 2.57
4052 4699 6.029346 ACTGCATAAGAAAACCCTTCAATG 57.971 37.500 0.00 0.00 0.00 2.82
4053 4700 6.012745 AGACTGCATAAGAAAACCCTTCAAT 58.987 36.000 0.00 0.00 0.00 2.57
4057 4704 6.239317 GGAAAAGACTGCATAAGAAAACCCTT 60.239 38.462 0.00 0.00 0.00 3.95
4058 4705 5.243954 GGAAAAGACTGCATAAGAAAACCCT 59.756 40.000 0.00 0.00 0.00 4.34
4065 4712 5.013079 TCCAGAAGGAAAAGACTGCATAAGA 59.987 40.000 0.00 0.00 42.23 2.10
4079 4726 4.985290 GCAATTCGCCAATCCAGAAGGAA 61.985 47.826 0.00 0.00 40.69 3.36
4080 4727 3.523508 GCAATTCGCCAATCCAGAAGGA 61.524 50.000 0.00 0.00 41.31 3.36
4081 4728 1.202336 GCAATTCGCCAATCCAGAAGG 60.202 52.381 0.00 0.00 32.94 3.46
4082 4729 1.473677 TGCAATTCGCCAATCCAGAAG 59.526 47.619 0.00 0.00 41.33 2.85
4083 4730 1.473677 CTGCAATTCGCCAATCCAGAA 59.526 47.619 0.00 0.00 41.33 3.02
4084 4731 1.097232 CTGCAATTCGCCAATCCAGA 58.903 50.000 0.00 0.00 41.33 3.86
4085 4732 0.813184 ACTGCAATTCGCCAATCCAG 59.187 50.000 0.00 4.05 41.33 3.86
4086 4733 0.527113 CACTGCAATTCGCCAATCCA 59.473 50.000 0.00 0.00 41.33 3.41
4087 4734 0.803380 GCACTGCAATTCGCCAATCC 60.803 55.000 0.00 0.00 41.33 3.01
4088 4735 0.171903 AGCACTGCAATTCGCCAATC 59.828 50.000 3.30 0.00 41.33 2.67
4089 4736 0.108992 CAGCACTGCAATTCGCCAAT 60.109 50.000 3.30 0.00 41.33 3.16
4090 4737 1.171549 TCAGCACTGCAATTCGCCAA 61.172 50.000 3.30 0.00 41.33 4.52
4091 4738 1.579964 CTCAGCACTGCAATTCGCCA 61.580 55.000 3.30 0.00 41.33 5.69
4092 4739 1.136147 CTCAGCACTGCAATTCGCC 59.864 57.895 3.30 0.00 41.33 5.54
4093 4740 0.453950 CACTCAGCACTGCAATTCGC 60.454 55.000 3.30 0.00 42.89 4.70
4094 4741 0.453950 GCACTCAGCACTGCAATTCG 60.454 55.000 3.30 0.00 44.79 3.34
4095 4742 3.396491 GCACTCAGCACTGCAATTC 57.604 52.632 3.30 0.00 44.79 2.17
4116 4763 1.133976 ACAACCTATCTCTGGCCATGC 60.134 52.381 5.51 0.00 0.00 4.06
4117 4764 3.287867 AACAACCTATCTCTGGCCATG 57.712 47.619 5.51 2.03 0.00 3.66
4118 4765 3.624777 CAAACAACCTATCTCTGGCCAT 58.375 45.455 5.51 0.00 0.00 4.40
4119 4766 2.290896 CCAAACAACCTATCTCTGGCCA 60.291 50.000 4.71 4.71 0.00 5.36
4120 4767 2.369394 CCAAACAACCTATCTCTGGCC 58.631 52.381 0.00 0.00 0.00 5.36
4121 4768 2.026262 TCCCAAACAACCTATCTCTGGC 60.026 50.000 0.00 0.00 0.00 4.85
4122 4769 4.263506 ACTTCCCAAACAACCTATCTCTGG 60.264 45.833 0.00 0.00 0.00 3.86
4123 4770 4.911390 ACTTCCCAAACAACCTATCTCTG 58.089 43.478 0.00 0.00 0.00 3.35
4124 4771 5.584551 AACTTCCCAAACAACCTATCTCT 57.415 39.130 0.00 0.00 0.00 3.10
4125 4772 5.183331 GGAAACTTCCCAAACAACCTATCTC 59.817 44.000 0.00 0.00 41.62 2.75
4126 4773 5.077564 GGAAACTTCCCAAACAACCTATCT 58.922 41.667 0.00 0.00 41.62 1.98
4127 4774 5.386958 GGAAACTTCCCAAACAACCTATC 57.613 43.478 0.00 0.00 41.62 2.08
4128 4775 5.663556 TTTGGAAACTTCCCAAACAACCTAT 59.336 36.000 6.03 0.00 45.64 2.57
4129 4776 5.024118 TTTGGAAACTTCCCAAACAACCTA 58.976 37.500 6.03 0.00 45.64 3.08
4130 4777 3.841255 TTTGGAAACTTCCCAAACAACCT 59.159 39.130 6.03 0.00 45.64 3.50
4131 4778 4.209307 TTTGGAAACTTCCCAAACAACC 57.791 40.909 6.03 0.00 45.64 3.77
4141 4788 6.908870 ATGCTTCAAACTTTTGGAAACTTC 57.091 33.333 1.94 0.00 38.66 3.01
4142 4789 6.761242 GGTATGCTTCAAACTTTTGGAAACTT 59.239 34.615 1.94 0.00 38.66 2.66
4143 4790 6.280643 GGTATGCTTCAAACTTTTGGAAACT 58.719 36.000 1.94 0.00 38.66 2.66
4144 4791 5.465390 GGGTATGCTTCAAACTTTTGGAAAC 59.535 40.000 1.94 0.00 38.66 2.78
4145 4792 5.129485 TGGGTATGCTTCAAACTTTTGGAAA 59.871 36.000 1.94 0.00 38.66 3.13
4146 4793 4.651503 TGGGTATGCTTCAAACTTTTGGAA 59.348 37.500 1.94 0.00 38.66 3.53
4147 4794 4.219115 TGGGTATGCTTCAAACTTTTGGA 58.781 39.130 1.94 0.00 38.66 3.53
4148 4795 4.599047 TGGGTATGCTTCAAACTTTTGG 57.401 40.909 1.94 0.00 38.66 3.28
4149 4796 4.448732 GCTTGGGTATGCTTCAAACTTTTG 59.551 41.667 0.00 0.00 39.48 2.44
4150 4797 4.631131 GCTTGGGTATGCTTCAAACTTTT 58.369 39.130 0.00 0.00 0.00 2.27
4151 4798 3.305335 CGCTTGGGTATGCTTCAAACTTT 60.305 43.478 0.00 0.00 0.00 2.66
4152 4799 2.228822 CGCTTGGGTATGCTTCAAACTT 59.771 45.455 0.00 0.00 0.00 2.66
4153 4800 1.812571 CGCTTGGGTATGCTTCAAACT 59.187 47.619 0.00 0.00 0.00 2.66
4154 4801 1.732405 GCGCTTGGGTATGCTTCAAAC 60.732 52.381 0.00 0.00 0.00 2.93
4155 4802 0.525761 GCGCTTGGGTATGCTTCAAA 59.474 50.000 0.00 0.00 0.00 2.69
4156 4803 0.607762 TGCGCTTGGGTATGCTTCAA 60.608 50.000 9.73 0.00 0.00 2.69
4157 4804 1.002746 TGCGCTTGGGTATGCTTCA 60.003 52.632 9.73 0.00 0.00 3.02
4158 4805 1.429423 GTGCGCTTGGGTATGCTTC 59.571 57.895 9.73 0.00 0.00 3.86
4159 4806 2.398554 CGTGCGCTTGGGTATGCTT 61.399 57.895 9.73 0.00 0.00 3.91
4160 4807 2.593468 ATCGTGCGCTTGGGTATGCT 62.593 55.000 9.73 0.00 0.00 3.79
4161 4808 2.105960 GATCGTGCGCTTGGGTATGC 62.106 60.000 9.73 0.00 0.00 3.14
4162 4809 0.530650 AGATCGTGCGCTTGGGTATG 60.531 55.000 9.73 0.00 0.00 2.39
4163 4810 0.530650 CAGATCGTGCGCTTGGGTAT 60.531 55.000 9.73 0.00 0.00 2.73
4164 4811 1.153647 CAGATCGTGCGCTTGGGTA 60.154 57.895 9.73 0.00 0.00 3.69
4165 4812 2.434884 CAGATCGTGCGCTTGGGT 60.435 61.111 9.73 0.00 0.00 4.51
4166 4813 3.869272 GCAGATCGTGCGCTTGGG 61.869 66.667 9.73 0.00 43.99 4.12
4174 4821 5.936686 AAGATAATTGGATGCAGATCGTG 57.063 39.130 0.00 0.00 0.00 4.35
4175 4822 6.309712 CAAAGATAATTGGATGCAGATCGT 57.690 37.500 0.00 0.00 0.00 3.73
4211 4858 6.783708 TTCAACATACAAGACTGGGTTTTT 57.216 33.333 0.00 0.00 0.00 1.94
4212 4859 6.293955 CGATTCAACATACAAGACTGGGTTTT 60.294 38.462 0.00 0.00 0.00 2.43
4213 4860 5.181245 CGATTCAACATACAAGACTGGGTTT 59.819 40.000 0.00 0.00 0.00 3.27
4214 4861 4.695455 CGATTCAACATACAAGACTGGGTT 59.305 41.667 0.00 0.00 0.00 4.11
4215 4862 4.020573 TCGATTCAACATACAAGACTGGGT 60.021 41.667 0.00 0.00 0.00 4.51
4216 4863 4.503910 TCGATTCAACATACAAGACTGGG 58.496 43.478 0.00 0.00 0.00 4.45
4217 4864 6.980978 AGTATCGATTCAACATACAAGACTGG 59.019 38.462 1.71 0.00 0.00 4.00
4218 4865 7.168302 GGAGTATCGATTCAACATACAAGACTG 59.832 40.741 1.71 0.00 34.37 3.51
4219 4866 7.203910 GGAGTATCGATTCAACATACAAGACT 58.796 38.462 1.71 0.00 34.37 3.24
4220 4867 6.421202 GGGAGTATCGATTCAACATACAAGAC 59.579 42.308 1.71 0.00 34.37 3.01
4221 4868 6.513180 GGGAGTATCGATTCAACATACAAGA 58.487 40.000 1.71 0.00 34.37 3.02
4222 4869 5.402568 CGGGAGTATCGATTCAACATACAAG 59.597 44.000 1.71 0.00 34.37 3.16
4223 4870 5.163488 ACGGGAGTATCGATTCAACATACAA 60.163 40.000 1.71 0.00 44.60 2.41
4224 4871 4.340097 ACGGGAGTATCGATTCAACATACA 59.660 41.667 1.71 0.00 44.60 2.29
4225 4872 4.868067 ACGGGAGTATCGATTCAACATAC 58.132 43.478 1.71 0.00 44.60 2.39
4226 4873 5.524971 AACGGGAGTATCGATTCAACATA 57.475 39.130 1.71 0.00 46.69 2.29
4227 4874 4.402056 AACGGGAGTATCGATTCAACAT 57.598 40.909 1.71 0.00 46.69 2.71
4228 4875 3.880047 AACGGGAGTATCGATTCAACA 57.120 42.857 1.71 0.00 46.69 3.33
4229 4876 6.441274 TGTATAACGGGAGTATCGATTCAAC 58.559 40.000 1.71 0.00 46.69 3.18
4230 4877 6.638096 TGTATAACGGGAGTATCGATTCAA 57.362 37.500 1.71 0.00 46.69 2.69
4231 4878 6.638096 TTGTATAACGGGAGTATCGATTCA 57.362 37.500 1.71 0.00 46.69 2.57
4232 4879 6.919662 TGTTTGTATAACGGGAGTATCGATTC 59.080 38.462 1.71 0.00 46.69 2.52
4233 4880 6.698766 GTGTTTGTATAACGGGAGTATCGATT 59.301 38.462 1.71 0.00 46.69 3.34
4234 4881 6.211515 GTGTTTGTATAACGGGAGTATCGAT 58.788 40.000 2.16 2.16 46.69 3.59
4235 4882 5.450412 GGTGTTTGTATAACGGGAGTATCGA 60.450 44.000 0.00 0.00 46.69 3.59
4236 4883 4.741676 GGTGTTTGTATAACGGGAGTATCG 59.258 45.833 0.00 0.00 46.69 2.92
4237 4884 5.663456 TGGTGTTTGTATAACGGGAGTATC 58.337 41.667 0.00 0.00 46.69 2.24
4238 4885 5.188359 ACTGGTGTTTGTATAACGGGAGTAT 59.812 40.000 0.00 0.00 46.69 2.12
4239 4886 4.527816 ACTGGTGTTTGTATAACGGGAGTA 59.472 41.667 0.00 0.00 46.69 2.59
4241 4888 3.930848 GACTGGTGTTTGTATAACGGGAG 59.069 47.826 0.00 0.00 0.00 4.30
4242 4889 3.579586 AGACTGGTGTTTGTATAACGGGA 59.420 43.478 0.00 0.00 0.00 5.14
4243 4890 3.682858 CAGACTGGTGTTTGTATAACGGG 59.317 47.826 0.00 0.00 0.00 5.28
4244 4891 3.682858 CCAGACTGGTGTTTGTATAACGG 59.317 47.826 13.84 0.00 31.35 4.44
4245 4892 4.562082 TCCAGACTGGTGTTTGTATAACG 58.438 43.478 21.06 0.00 39.03 3.18
4246 4893 6.228258 TCTTCCAGACTGGTGTTTGTATAAC 58.772 40.000 21.06 0.00 39.03 1.89
4247 4894 6.428083 TCTTCCAGACTGGTGTTTGTATAA 57.572 37.500 21.06 4.03 39.03 0.98
4248 4895 6.406370 CATCTTCCAGACTGGTGTTTGTATA 58.594 40.000 21.06 0.00 39.03 1.47
4249 4896 4.974645 TCTTCCAGACTGGTGTTTGTAT 57.025 40.909 21.06 0.00 39.03 2.29
4250 4897 4.641396 CATCTTCCAGACTGGTGTTTGTA 58.359 43.478 21.06 0.00 39.03 2.41
4251 4898 3.480470 CATCTTCCAGACTGGTGTTTGT 58.520 45.455 21.06 1.70 39.03 2.83
4252 4899 2.227388 GCATCTTCCAGACTGGTGTTTG 59.773 50.000 21.06 14.93 39.03 2.93
4253 4900 2.107204 AGCATCTTCCAGACTGGTGTTT 59.893 45.455 21.06 2.95 39.03 2.83
4254 4901 1.701847 AGCATCTTCCAGACTGGTGTT 59.298 47.619 21.06 7.33 39.03 3.32
4255 4902 1.277557 GAGCATCTTCCAGACTGGTGT 59.722 52.381 21.06 3.42 39.03 4.16
4256 4903 2.021355 GAGCATCTTCCAGACTGGTG 57.979 55.000 21.06 12.83 39.03 4.17
4274 4921 3.065510 CGATCCAAAACTCTCTCGCTAGA 59.934 47.826 0.00 0.00 0.00 2.43
4275 4922 3.065510 TCGATCCAAAACTCTCTCGCTAG 59.934 47.826 0.00 0.00 0.00 3.42
4276 4923 3.014623 TCGATCCAAAACTCTCTCGCTA 58.985 45.455 0.00 0.00 0.00 4.26
4277 4924 1.819288 TCGATCCAAAACTCTCTCGCT 59.181 47.619 0.00 0.00 0.00 4.93
4278 4925 1.921230 GTCGATCCAAAACTCTCTCGC 59.079 52.381 0.00 0.00 0.00 5.03
4279 4926 2.159558 TCGTCGATCCAAAACTCTCTCG 60.160 50.000 0.00 0.00 0.00 4.04
4280 4927 3.489180 TCGTCGATCCAAAACTCTCTC 57.511 47.619 0.00 0.00 0.00 3.20
4281 4928 3.936372 TTCGTCGATCCAAAACTCTCT 57.064 42.857 0.00 0.00 0.00 3.10
4282 4929 4.174009 TGATTCGTCGATCCAAAACTCTC 58.826 43.478 0.00 0.00 0.00 3.20
4283 4930 4.082190 TCTGATTCGTCGATCCAAAACTCT 60.082 41.667 0.00 0.00 0.00 3.24
4284 4931 4.174009 TCTGATTCGTCGATCCAAAACTC 58.826 43.478 0.00 0.00 0.00 3.01
4285 4932 4.177026 CTCTGATTCGTCGATCCAAAACT 58.823 43.478 0.00 0.00 0.00 2.66
4286 4933 3.242123 GCTCTGATTCGTCGATCCAAAAC 60.242 47.826 0.00 0.00 0.00 2.43
4287 4934 2.930040 GCTCTGATTCGTCGATCCAAAA 59.070 45.455 0.00 0.00 0.00 2.44
4288 4935 2.094234 TGCTCTGATTCGTCGATCCAAA 60.094 45.455 0.00 0.00 0.00 3.28
4289 4936 1.476488 TGCTCTGATTCGTCGATCCAA 59.524 47.619 0.00 0.00 0.00 3.53
4290 4937 1.102978 TGCTCTGATTCGTCGATCCA 58.897 50.000 0.00 0.00 0.00 3.41
4291 4938 2.030363 AGATGCTCTGATTCGTCGATCC 60.030 50.000 0.00 0.00 0.00 3.36
4292 4939 3.233578 GAGATGCTCTGATTCGTCGATC 58.766 50.000 0.00 0.00 0.00 3.69
4293 4940 2.030363 GGAGATGCTCTGATTCGTCGAT 60.030 50.000 0.00 0.00 0.00 3.59
4294 4941 1.335182 GGAGATGCTCTGATTCGTCGA 59.665 52.381 0.00 0.00 0.00 4.20
4295 4942 1.066152 TGGAGATGCTCTGATTCGTCG 59.934 52.381 0.00 0.00 0.00 5.12
4296 4943 2.741612 CTGGAGATGCTCTGATTCGTC 58.258 52.381 0.00 0.00 0.00 4.20
4297 4944 1.202510 GCTGGAGATGCTCTGATTCGT 60.203 52.381 0.00 0.00 0.00 3.85
4298 4945 1.500108 GCTGGAGATGCTCTGATTCG 58.500 55.000 0.00 0.00 0.00 3.34
4299 4946 1.873069 CGGCTGGAGATGCTCTGATTC 60.873 57.143 0.00 0.00 0.00 2.52
4300 4947 0.106335 CGGCTGGAGATGCTCTGATT 59.894 55.000 0.00 0.00 0.00 2.57
4301 4948 1.747145 CGGCTGGAGATGCTCTGAT 59.253 57.895 0.00 0.00 0.00 2.90
4302 4949 3.086391 GCGGCTGGAGATGCTCTGA 62.086 63.158 0.00 0.00 0.00 3.27
4303 4950 2.588314 GCGGCTGGAGATGCTCTG 60.588 66.667 0.00 0.00 0.00 3.35
4304 4951 4.218578 CGCGGCTGGAGATGCTCT 62.219 66.667 0.00 0.00 0.00 4.09
4305 4952 4.521062 ACGCGGCTGGAGATGCTC 62.521 66.667 12.47 0.00 0.00 4.26
4306 4953 4.521062 GACGCGGCTGGAGATGCT 62.521 66.667 12.47 0.00 0.00 3.79
4308 4955 4.899239 GGGACGCGGCTGGAGATG 62.899 72.222 13.91 0.00 0.00 2.90
4367 5014 1.172812 GGAGCGACTGGGCTGTTTTT 61.173 55.000 0.04 0.00 44.93 1.94
4368 5015 1.600916 GGAGCGACTGGGCTGTTTT 60.601 57.895 0.04 0.00 44.93 2.43
4369 5016 2.032681 GGAGCGACTGGGCTGTTT 59.967 61.111 0.04 0.00 44.93 2.83
4370 5017 4.021925 GGGAGCGACTGGGCTGTT 62.022 66.667 0.04 0.00 44.93 3.16
4374 5021 3.541713 CTAGGGGAGCGACTGGGC 61.542 72.222 0.00 0.00 0.00 5.36
4375 5022 2.840102 CCTAGGGGAGCGACTGGG 60.840 72.222 0.00 0.00 33.58 4.45
4376 5023 2.128507 GTCCTAGGGGAGCGACTGG 61.129 68.421 9.46 0.00 43.12 4.00
4377 5024 2.482333 CGTCCTAGGGGAGCGACTG 61.482 68.421 9.46 0.00 43.12 3.51
4378 5025 2.124236 CGTCCTAGGGGAGCGACT 60.124 66.667 9.46 0.00 43.12 4.18
4379 5026 2.124403 TCGTCCTAGGGGAGCGAC 60.124 66.667 9.46 0.00 43.12 5.19
4380 5027 2.124403 GTCGTCCTAGGGGAGCGA 60.124 66.667 9.46 11.23 43.12 4.93
4381 5028 3.584052 CGTCGTCCTAGGGGAGCG 61.584 72.222 9.46 9.06 43.12 5.03
4382 5029 1.318158 TTTCGTCGTCCTAGGGGAGC 61.318 60.000 9.46 1.94 43.12 4.70
4383 5030 1.134560 CTTTTCGTCGTCCTAGGGGAG 59.865 57.143 9.46 0.60 43.12 4.30
4384 5031 1.180029 CTTTTCGTCGTCCTAGGGGA 58.820 55.000 9.46 4.01 39.70 4.81
4385 5032 0.459759 GCTTTTCGTCGTCCTAGGGG 60.460 60.000 9.46 1.28 0.00 4.79
4386 5033 0.801067 CGCTTTTCGTCGTCCTAGGG 60.801 60.000 9.46 0.00 0.00 3.53
4387 5034 1.411493 GCGCTTTTCGTCGTCCTAGG 61.411 60.000 0.82 0.82 41.07 3.02
4388 5035 1.411493 GGCGCTTTTCGTCGTCCTAG 61.411 60.000 7.64 0.00 41.07 3.02
4389 5036 1.444895 GGCGCTTTTCGTCGTCCTA 60.445 57.895 7.64 0.00 41.07 2.94
4390 5037 2.737376 GGCGCTTTTCGTCGTCCT 60.737 61.111 7.64 0.00 41.07 3.85
4395 5042 2.172659 GAACCGGCGCTTTTCGTC 59.827 61.111 7.64 0.00 41.07 4.20
4396 5043 3.708734 CGAACCGGCGCTTTTCGT 61.709 61.111 22.09 3.80 41.07 3.85
4397 5044 4.439472 CCGAACCGGCGCTTTTCG 62.439 66.667 22.90 22.90 41.17 3.46
4472 5119 3.894547 TTTCCCTTGCGTCGGAGCC 62.895 63.158 0.00 0.00 36.02 4.70
4473 5120 1.964373 TTTTCCCTTGCGTCGGAGC 60.964 57.895 0.00 0.00 37.71 4.70
4474 5121 4.371975 TTTTCCCTTGCGTCGGAG 57.628 55.556 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.