Multiple sequence alignment - TraesCS3B01G201700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G201700 chr3B 100.000 2375 0 0 1 2375 235920699 235918325 0.000000e+00 4386
1 TraesCS3B01G201700 chr3B 88.706 425 29 8 47 455 800636096 800636517 3.520000e-138 501
2 TraesCS3B01G201700 chr3B 88.498 426 30 9 46 455 2149532 2149110 4.560000e-137 497
3 TraesCS3B01G201700 chr3B 86.651 427 37 10 46 456 463087359 463087781 2.780000e-124 455
4 TraesCS3B01G201700 chr3B 97.391 115 2 1 541 654 176634102 176633988 6.700000e-46 195
5 TraesCS3B01G201700 chr3B 96.552 116 4 0 533 648 15806632 15806517 2.410000e-45 193
6 TraesCS3B01G201700 chr3A 92.110 1749 79 21 652 2375 169226206 169227920 0.000000e+00 2410
7 TraesCS3B01G201700 chr3A 87.805 451 31 13 24 455 699836018 699836463 7.570000e-140 507
8 TraesCS3B01G201700 chr3D 94.797 1230 34 15 658 1877 158459087 158457878 0.000000e+00 1890
9 TraesCS3B01G201700 chr3D 88.078 411 45 4 46 455 536990447 536990854 3.550000e-133 484
10 TraesCS3B01G201700 chr3D 92.079 303 17 2 2075 2375 158457741 158457444 1.020000e-113 420
11 TraesCS3B01G201700 chr3D 88.430 121 12 2 1902 2022 158457884 158457766 6.840000e-31 145
12 TraesCS3B01G201700 chr4B 89.120 432 28 9 41 456 468236885 468237313 9.730000e-144 520
13 TraesCS3B01G201700 chr4B 88.941 425 28 8 48 456 90455242 90454821 7.570000e-140 507
14 TraesCS3B01G201700 chr4B 88.318 428 30 8 45 455 27254558 27254134 1.640000e-136 496
15 TraesCS3B01G201700 chr4B 99.123 114 1 0 537 650 449123567 449123680 3.090000e-49 206
16 TraesCS3B01G201700 chr7B 89.227 427 27 8 46 456 876368 876791 1.260000e-142 516
17 TraesCS3B01G201700 chr7B 88.318 428 31 9 45 456 394768769 394769193 1.640000e-136 496
18 TraesCS3B01G201700 chr4A 88.941 425 28 8 47 455 577368804 577369225 7.570000e-140 507
19 TraesCS3B01G201700 chr5B 88.679 424 29 8 48 455 250231106 250231526 1.270000e-137 499
20 TraesCS3B01G201700 chr5B 100.000 109 0 0 541 649 90515281 90515389 4.000000e-48 202
21 TraesCS3B01G201700 chr5B 93.750 128 5 2 536 661 78422390 78422264 3.120000e-44 189
22 TraesCS3B01G201700 chr1B 88.525 427 30 8 46 456 678292826 678293249 1.270000e-137 499
23 TraesCS3B01G201700 chr1B 99.099 111 1 0 541 651 624662919 624663029 1.440000e-47 200
24 TraesCS3B01G201700 chr5A 87.793 426 32 10 47 456 55263398 55262977 4.590000e-132 481
25 TraesCS3B01G201700 chr6B 96.610 118 2 2 532 648 525565604 525565720 6.700000e-46 195
26 TraesCS3B01G201700 chr1D 95.763 118 5 0 533 650 247520950 247521067 8.660000e-45 191
27 TraesCS3B01G201700 chr7D 92.537 134 6 4 515 647 58205579 58205449 3.120000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G201700 chr3B 235918325 235920699 2374 True 4386.000000 4386 100.000000 1 2375 1 chr3B.!!$R4 2374
1 TraesCS3B01G201700 chr3A 169226206 169227920 1714 False 2410.000000 2410 92.110000 652 2375 1 chr3A.!!$F1 1723
2 TraesCS3B01G201700 chr3D 158457444 158459087 1643 True 818.333333 1890 91.768667 658 2375 3 chr3D.!!$R1 1717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
293 294 0.034186 TCCGCAGCCCTCATTTCAAT 60.034 50.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1578 1594 0.040067 ACTTAACACGACCGACCGAC 60.04 55.0 3.56 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.914834 AAATTGCTAGTACCAGTATATTTTCCA 57.085 29.630 0.00 0.00 0.00 3.53
29 30 9.914834 TTGCTAGTACCAGTATATTTTCCATTT 57.085 29.630 0.00 0.00 0.00 2.32
30 31 9.914834 TGCTAGTACCAGTATATTTTCCATTTT 57.085 29.630 0.00 0.00 0.00 1.82
44 45 8.738645 ATTTTCCATTTTATTCTAGCGTCTCT 57.261 30.769 0.00 0.00 0.00 3.10
45 46 9.832445 ATTTTCCATTTTATTCTAGCGTCTCTA 57.168 29.630 0.00 0.00 0.00 2.43
46 47 8.873215 TTTCCATTTTATTCTAGCGTCTCTAG 57.127 34.615 0.00 0.00 44.90 2.43
47 48 6.982852 TCCATTTTATTCTAGCGTCTCTAGG 58.017 40.000 0.00 0.00 43.93 3.02
48 49 6.776116 TCCATTTTATTCTAGCGTCTCTAGGA 59.224 38.462 0.00 0.00 43.93 2.94
49 50 7.040340 TCCATTTTATTCTAGCGTCTCTAGGAG 60.040 40.741 0.00 0.00 43.93 3.69
50 51 7.040340 CCATTTTATTCTAGCGTCTCTAGGAGA 60.040 40.741 0.00 0.00 43.93 3.71
51 52 7.876936 TTTTATTCTAGCGTCTCTAGGAGAA 57.123 36.000 0.00 0.00 43.93 2.87
52 53 7.876936 TTTATTCTAGCGTCTCTAGGAGAAA 57.123 36.000 0.00 0.00 40.16 2.52
53 54 7.499321 TTATTCTAGCGTCTCTAGGAGAAAG 57.501 40.000 0.00 0.00 43.93 2.62
54 55 3.811083 TCTAGCGTCTCTAGGAGAAAGG 58.189 50.000 0.00 0.00 43.93 3.11
55 56 1.107945 AGCGTCTCTAGGAGAAAGGC 58.892 55.000 0.00 4.16 40.59 4.35
56 57 0.248702 GCGTCTCTAGGAGAAAGGCG 60.249 60.000 0.00 0.00 40.59 5.52
57 58 1.096416 CGTCTCTAGGAGAAAGGCGT 58.904 55.000 0.00 0.00 40.59 5.68
58 59 1.473278 CGTCTCTAGGAGAAAGGCGTT 59.527 52.381 0.00 0.00 40.59 4.84
59 60 2.094649 CGTCTCTAGGAGAAAGGCGTTT 60.095 50.000 3.62 3.62 40.59 3.60
60 61 3.614390 CGTCTCTAGGAGAAAGGCGTTTT 60.614 47.826 5.76 0.00 40.59 2.43
61 62 3.680458 GTCTCTAGGAGAAAGGCGTTTTG 59.320 47.826 5.76 0.00 40.59 2.44
62 63 3.003480 CTCTAGGAGAAAGGCGTTTTGG 58.997 50.000 5.76 0.00 0.00 3.28
63 64 2.635915 TCTAGGAGAAAGGCGTTTTGGA 59.364 45.455 5.76 0.00 0.00 3.53
64 65 1.897560 AGGAGAAAGGCGTTTTGGAG 58.102 50.000 5.76 0.00 0.00 3.86
65 66 0.881796 GGAGAAAGGCGTTTTGGAGG 59.118 55.000 5.76 0.00 0.00 4.30
66 67 0.241213 GAGAAAGGCGTTTTGGAGGC 59.759 55.000 5.76 0.00 38.40 4.70
71 72 4.103103 GCGTTTTGGAGGCCGAGC 62.103 66.667 0.00 0.00 33.08 5.03
72 73 2.358737 CGTTTTGGAGGCCGAGCT 60.359 61.111 0.00 0.00 0.00 4.09
73 74 1.966451 CGTTTTGGAGGCCGAGCTT 60.966 57.895 0.00 0.00 0.00 3.74
74 75 1.515521 CGTTTTGGAGGCCGAGCTTT 61.516 55.000 0.00 0.00 0.00 3.51
75 76 1.530323 GTTTTGGAGGCCGAGCTTTA 58.470 50.000 0.00 0.00 0.00 1.85
76 77 2.092323 GTTTTGGAGGCCGAGCTTTAT 58.908 47.619 0.00 0.00 0.00 1.40
77 78 1.750193 TTTGGAGGCCGAGCTTTATG 58.250 50.000 0.00 0.00 0.00 1.90
78 79 0.107214 TTGGAGGCCGAGCTTTATGG 60.107 55.000 0.00 0.00 0.00 2.74
79 80 0.980754 TGGAGGCCGAGCTTTATGGA 60.981 55.000 0.00 0.00 0.00 3.41
80 81 0.250081 GGAGGCCGAGCTTTATGGAG 60.250 60.000 0.00 0.00 0.00 3.86
81 82 0.250081 GAGGCCGAGCTTTATGGAGG 60.250 60.000 0.00 0.00 0.00 4.30
82 83 1.894282 GGCCGAGCTTTATGGAGGC 60.894 63.158 0.00 0.00 43.47 4.70
83 84 1.894282 GCCGAGCTTTATGGAGGCC 60.894 63.158 0.00 0.00 38.72 5.19
84 85 1.832912 CCGAGCTTTATGGAGGCCT 59.167 57.895 3.86 3.86 0.00 5.19
85 86 0.181350 CCGAGCTTTATGGAGGCCTT 59.819 55.000 6.77 0.00 0.00 4.35
86 87 1.408822 CCGAGCTTTATGGAGGCCTTT 60.409 52.381 6.77 0.00 0.00 3.11
87 88 2.158813 CCGAGCTTTATGGAGGCCTTTA 60.159 50.000 6.77 0.00 0.00 1.85
88 89 3.496870 CCGAGCTTTATGGAGGCCTTTAT 60.497 47.826 6.77 7.37 0.00 1.40
89 90 4.137543 CGAGCTTTATGGAGGCCTTTATT 58.862 43.478 6.77 0.00 0.00 1.40
90 91 4.580580 CGAGCTTTATGGAGGCCTTTATTT 59.419 41.667 6.77 0.00 0.00 1.40
91 92 5.067805 CGAGCTTTATGGAGGCCTTTATTTT 59.932 40.000 6.77 0.00 0.00 1.82
92 93 6.405842 CGAGCTTTATGGAGGCCTTTATTTTT 60.406 38.462 6.77 0.00 0.00 1.94
162 163 6.995511 AAAATATGCCTGTATGTTACGTGT 57.004 33.333 0.00 0.00 0.00 4.49
163 164 8.495361 AAAAATATGCCTGTATGTTACGTGTA 57.505 30.769 0.00 0.00 0.00 2.90
164 165 8.495361 AAAATATGCCTGTATGTTACGTGTAA 57.505 30.769 0.00 0.00 0.00 2.41
165 166 8.495361 AAATATGCCTGTATGTTACGTGTAAA 57.505 30.769 0.00 0.00 0.00 2.01
166 167 8.495361 AATATGCCTGTATGTTACGTGTAAAA 57.505 30.769 0.00 0.00 0.00 1.52
167 168 5.849357 TGCCTGTATGTTACGTGTAAAAG 57.151 39.130 0.00 0.00 0.00 2.27
168 169 5.299148 TGCCTGTATGTTACGTGTAAAAGT 58.701 37.500 0.00 0.00 0.00 2.66
169 170 6.453943 TGCCTGTATGTTACGTGTAAAAGTA 58.546 36.000 0.00 0.00 0.00 2.24
170 171 6.365789 TGCCTGTATGTTACGTGTAAAAGTAC 59.634 38.462 0.00 0.00 0.00 2.73
171 172 6.365789 GCCTGTATGTTACGTGTAAAAGTACA 59.634 38.462 0.00 4.23 37.92 2.90
172 173 7.063780 GCCTGTATGTTACGTGTAAAAGTACAT 59.936 37.037 0.00 0.00 42.18 2.29
174 175 9.131416 CTGTATGTTACGTGTAAAAGTACATGA 57.869 33.333 11.94 0.00 46.25 3.07
175 176 9.642327 TGTATGTTACGTGTAAAAGTACATGAT 57.358 29.630 11.94 0.06 46.25 2.45
176 177 9.895894 GTATGTTACGTGTAAAAGTACATGATG 57.104 33.333 11.94 0.00 46.25 3.07
177 178 8.766000 ATGTTACGTGTAAAAGTACATGATGA 57.234 30.769 11.94 0.00 46.25 2.92
178 179 8.590719 TGTTACGTGTAAAAGTACATGATGAA 57.409 30.769 11.94 2.45 46.25 2.57
179 180 9.043079 TGTTACGTGTAAAAGTACATGATGAAA 57.957 29.630 11.94 0.00 46.25 2.69
194 195 8.176814 ACATGATGAAATATTTTTGAGTTGCG 57.823 30.769 0.00 0.00 0.00 4.85
195 196 8.028354 ACATGATGAAATATTTTTGAGTTGCGA 58.972 29.630 0.00 0.00 0.00 5.10
196 197 7.795431 TGATGAAATATTTTTGAGTTGCGAC 57.205 32.000 1.43 0.00 0.00 5.19
197 198 6.806249 TGATGAAATATTTTTGAGTTGCGACC 59.194 34.615 1.43 0.00 0.00 4.79
198 199 6.325919 TGAAATATTTTTGAGTTGCGACCT 57.674 33.333 1.43 0.00 0.00 3.85
199 200 6.148948 TGAAATATTTTTGAGTTGCGACCTG 58.851 36.000 1.43 0.00 0.00 4.00
200 201 5.705609 AATATTTTTGAGTTGCGACCTGT 57.294 34.783 0.00 0.00 0.00 4.00
201 202 6.811253 AATATTTTTGAGTTGCGACCTGTA 57.189 33.333 0.00 0.00 0.00 2.74
202 203 3.955771 TTTTTGAGTTGCGACCTGTAC 57.044 42.857 0.00 0.00 0.00 2.90
203 204 2.605837 TTTGAGTTGCGACCTGTACA 57.394 45.000 0.00 0.00 0.00 2.90
204 205 2.605837 TTGAGTTGCGACCTGTACAA 57.394 45.000 0.00 0.00 0.00 2.41
205 206 2.605837 TGAGTTGCGACCTGTACAAA 57.394 45.000 0.00 0.00 0.00 2.83
206 207 2.907634 TGAGTTGCGACCTGTACAAAA 58.092 42.857 0.00 0.00 0.00 2.44
207 208 3.271729 TGAGTTGCGACCTGTACAAAAA 58.728 40.909 0.00 0.00 0.00 1.94
227 228 5.473066 AAAAGACAAATTCATGGTCTGGG 57.527 39.130 2.80 0.00 40.80 4.45
228 229 4.387026 AAGACAAATTCATGGTCTGGGA 57.613 40.909 2.80 0.00 40.80 4.37
229 230 3.960571 AGACAAATTCATGGTCTGGGAG 58.039 45.455 1.32 0.00 40.21 4.30
230 231 3.019564 GACAAATTCATGGTCTGGGAGG 58.980 50.000 0.00 0.00 0.00 4.30
231 232 2.649312 ACAAATTCATGGTCTGGGAGGA 59.351 45.455 0.00 0.00 0.00 3.71
232 233 3.270433 ACAAATTCATGGTCTGGGAGGAT 59.730 43.478 0.00 0.00 0.00 3.24
233 234 3.589951 AATTCATGGTCTGGGAGGATG 57.410 47.619 0.00 0.00 0.00 3.51
234 235 2.268796 TTCATGGTCTGGGAGGATGA 57.731 50.000 0.00 0.00 0.00 2.92
235 236 2.268796 TCATGGTCTGGGAGGATGAA 57.731 50.000 0.00 0.00 0.00 2.57
236 237 2.780414 TCATGGTCTGGGAGGATGAAT 58.220 47.619 0.00 0.00 0.00 2.57
237 238 3.940335 TCATGGTCTGGGAGGATGAATA 58.060 45.455 0.00 0.00 0.00 1.75
238 239 3.906218 TCATGGTCTGGGAGGATGAATAG 59.094 47.826 0.00 0.00 0.00 1.73
239 240 3.421394 TGGTCTGGGAGGATGAATAGT 57.579 47.619 0.00 0.00 0.00 2.12
240 241 4.552883 TGGTCTGGGAGGATGAATAGTA 57.447 45.455 0.00 0.00 0.00 1.82
241 242 5.093236 TGGTCTGGGAGGATGAATAGTAT 57.907 43.478 0.00 0.00 0.00 2.12
242 243 5.087323 TGGTCTGGGAGGATGAATAGTATC 58.913 45.833 0.00 0.00 0.00 2.24
243 244 5.087323 GGTCTGGGAGGATGAATAGTATCA 58.913 45.833 0.00 0.00 0.00 2.15
244 245 5.723887 GGTCTGGGAGGATGAATAGTATCAT 59.276 44.000 0.00 0.00 42.62 2.45
245 246 6.351711 GGTCTGGGAGGATGAATAGTATCATG 60.352 46.154 0.00 0.00 40.08 3.07
246 247 6.212388 GTCTGGGAGGATGAATAGTATCATGT 59.788 42.308 0.00 0.00 40.08 3.21
247 248 6.212187 TCTGGGAGGATGAATAGTATCATGTG 59.788 42.308 0.00 0.00 40.08 3.21
248 249 5.846164 TGGGAGGATGAATAGTATCATGTGT 59.154 40.000 0.00 0.00 40.08 3.72
249 250 6.329986 TGGGAGGATGAATAGTATCATGTGTT 59.670 38.462 0.00 0.00 40.08 3.32
250 251 7.512402 TGGGAGGATGAATAGTATCATGTGTTA 59.488 37.037 0.00 0.00 40.08 2.41
251 252 8.375506 GGGAGGATGAATAGTATCATGTGTTAA 58.624 37.037 0.00 0.00 40.08 2.01
252 253 9.778741 GGAGGATGAATAGTATCATGTGTTAAA 57.221 33.333 0.00 0.00 40.08 1.52
258 259 8.952278 TGAATAGTATCATGTGTTAAACAACCC 58.048 33.333 0.00 0.00 43.61 4.11
259 260 7.875327 ATAGTATCATGTGTTAAACAACCCC 57.125 36.000 0.00 0.00 43.61 4.95
260 261 5.636123 AGTATCATGTGTTAAACAACCCCA 58.364 37.500 0.00 0.00 43.61 4.96
261 262 5.710099 AGTATCATGTGTTAAACAACCCCAG 59.290 40.000 0.00 0.00 43.61 4.45
262 263 4.171878 TCATGTGTTAAACAACCCCAGA 57.828 40.909 0.00 0.00 43.61 3.86
263 264 4.735369 TCATGTGTTAAACAACCCCAGAT 58.265 39.130 0.00 0.00 43.61 2.90
264 265 5.144100 TCATGTGTTAAACAACCCCAGATT 58.856 37.500 0.00 0.00 43.61 2.40
265 266 5.600484 TCATGTGTTAAACAACCCCAGATTT 59.400 36.000 0.00 0.00 43.61 2.17
266 267 6.778069 TCATGTGTTAAACAACCCCAGATTTA 59.222 34.615 0.00 0.00 43.61 1.40
267 268 7.453126 TCATGTGTTAAACAACCCCAGATTTAT 59.547 33.333 0.00 0.00 43.61 1.40
268 269 7.222000 TGTGTTAAACAACCCCAGATTTATC 57.778 36.000 0.00 0.00 35.24 1.75
269 270 7.007723 TGTGTTAAACAACCCCAGATTTATCT 58.992 34.615 0.00 0.00 35.24 1.98
270 271 7.507616 TGTGTTAAACAACCCCAGATTTATCTT 59.492 33.333 0.00 0.00 35.24 2.40
271 272 8.364894 GTGTTAAACAACCCCAGATTTATCTTT 58.635 33.333 0.00 0.00 34.22 2.52
272 273 8.929487 TGTTAAACAACCCCAGATTTATCTTTT 58.071 29.630 0.00 0.00 34.22 2.27
273 274 9.772973 GTTAAACAACCCCAGATTTATCTTTTT 57.227 29.630 0.00 0.00 34.22 1.94
287 288 4.841441 TTTTTCCGCAGCCCTCAT 57.159 50.000 0.00 0.00 0.00 2.90
288 289 3.050089 TTTTTCCGCAGCCCTCATT 57.950 47.368 0.00 0.00 0.00 2.57
289 290 1.337118 TTTTTCCGCAGCCCTCATTT 58.663 45.000 0.00 0.00 0.00 2.32
290 291 0.887933 TTTTCCGCAGCCCTCATTTC 59.112 50.000 0.00 0.00 0.00 2.17
291 292 0.251121 TTTCCGCAGCCCTCATTTCA 60.251 50.000 0.00 0.00 0.00 2.69
292 293 0.251121 TTCCGCAGCCCTCATTTCAA 60.251 50.000 0.00 0.00 0.00 2.69
293 294 0.034186 TCCGCAGCCCTCATTTCAAT 60.034 50.000 0.00 0.00 0.00 2.57
294 295 0.101759 CCGCAGCCCTCATTTCAATG 59.898 55.000 0.00 0.00 37.75 2.82
295 296 0.813184 CGCAGCCCTCATTTCAATGT 59.187 50.000 0.00 0.00 37.65 2.71
296 297 2.016318 CGCAGCCCTCATTTCAATGTA 58.984 47.619 0.00 0.00 37.65 2.29
297 298 2.620115 CGCAGCCCTCATTTCAATGTAT 59.380 45.455 0.00 0.00 37.65 2.29
298 299 3.067180 CGCAGCCCTCATTTCAATGTATT 59.933 43.478 0.00 0.00 37.65 1.89
299 300 4.440525 CGCAGCCCTCATTTCAATGTATTT 60.441 41.667 0.00 0.00 37.65 1.40
300 301 5.422145 GCAGCCCTCATTTCAATGTATTTT 58.578 37.500 0.00 0.00 37.65 1.82
301 302 6.572519 GCAGCCCTCATTTCAATGTATTTTA 58.427 36.000 0.00 0.00 37.65 1.52
302 303 7.041107 GCAGCCCTCATTTCAATGTATTTTAA 58.959 34.615 0.00 0.00 37.65 1.52
303 304 7.548780 GCAGCCCTCATTTCAATGTATTTTAAA 59.451 33.333 0.00 0.00 37.65 1.52
304 305 8.872845 CAGCCCTCATTTCAATGTATTTTAAAC 58.127 33.333 0.00 0.00 37.65 2.01
305 306 8.815912 AGCCCTCATTTCAATGTATTTTAAACT 58.184 29.630 0.00 0.00 37.65 2.66
306 307 8.872845 GCCCTCATTTCAATGTATTTTAAACTG 58.127 33.333 0.00 0.00 37.65 3.16
337 338 5.816449 CACACATGTGTATTATGCCTTCA 57.184 39.130 30.11 0.00 42.83 3.02
338 339 6.381481 CACACATGTGTATTATGCCTTCAT 57.619 37.500 30.11 0.33 42.83 2.57
339 340 6.203647 CACACATGTGTATTATGCCTTCATG 58.796 40.000 30.11 9.77 42.83 3.07
340 341 5.887598 ACACATGTGTATTATGCCTTCATGT 59.112 36.000 29.66 0.00 42.90 3.21
341 342 7.012232 CACACATGTGTATTATGCCTTCATGTA 59.988 37.037 30.11 0.00 42.83 2.29
342 343 7.720957 ACACATGTGTATTATGCCTTCATGTAT 59.279 33.333 29.66 0.00 42.90 2.29
343 344 9.218440 CACATGTGTATTATGCCTTCATGTATA 57.782 33.333 18.03 0.00 41.14 1.47
344 345 9.964354 ACATGTGTATTATGCCTTCATGTATAT 57.036 29.630 0.00 0.00 41.23 0.86
347 348 9.657419 TGTGTATTATGCCTTCATGTATATCTG 57.343 33.333 0.00 0.00 34.22 2.90
348 349 9.658799 GTGTATTATGCCTTCATGTATATCTGT 57.341 33.333 0.00 0.00 34.22 3.41
422 423 9.797642 AAATTTCAAATTTGAATTTAGAGGGCT 57.202 25.926 29.13 14.52 45.65 5.19
423 424 9.440773 AATTTCAAATTTGAATTTAGAGGGCTC 57.559 29.630 29.13 0.00 45.65 4.70
424 425 7.537596 TTCAAATTTGAATTTAGAGGGCTCA 57.462 32.000 26.01 2.78 41.88 4.26
425 426 6.924111 TCAAATTTGAATTTAGAGGGCTCAC 58.076 36.000 18.45 0.00 36.52 3.51
426 427 6.721208 TCAAATTTGAATTTAGAGGGCTCACT 59.279 34.615 18.45 0.00 36.52 3.41
427 428 6.521151 AATTTGAATTTAGAGGGCTCACTG 57.479 37.500 0.00 0.00 0.00 3.66
428 429 3.634397 TGAATTTAGAGGGCTCACTGG 57.366 47.619 0.00 0.00 0.00 4.00
429 430 3.181329 TGAATTTAGAGGGCTCACTGGA 58.819 45.455 0.00 0.00 0.00 3.86
430 431 3.198635 TGAATTTAGAGGGCTCACTGGAG 59.801 47.826 0.00 0.00 44.33 3.86
447 448 2.751837 GCCCGAGCTCCAAAAGGG 60.752 66.667 16.95 16.95 44.72 3.95
448 449 3.077907 CCCGAGCTCCAAAAGGGA 58.922 61.111 16.43 0.00 44.70 4.20
456 457 2.562125 TCCAAAAGGGATTTCCGCG 58.438 52.632 0.00 0.00 42.15 6.46
457 458 0.250989 TCCAAAAGGGATTTCCGCGT 60.251 50.000 4.92 0.00 42.15 6.01
458 459 0.170339 CCAAAAGGGATTTCCGCGTC 59.830 55.000 4.92 0.00 41.52 5.19
459 460 0.170339 CAAAAGGGATTTCCGCGTCC 59.830 55.000 4.92 4.94 41.52 4.79
463 464 4.752514 GGATTTCCGCGTCCCTAG 57.247 61.111 4.92 0.00 0.00 3.02
464 465 1.821258 GGATTTCCGCGTCCCTAGT 59.179 57.895 4.92 0.00 0.00 2.57
465 466 0.249363 GGATTTCCGCGTCCCTAGTC 60.249 60.000 4.92 0.00 0.00 2.59
466 467 0.458669 GATTTCCGCGTCCCTAGTCA 59.541 55.000 4.92 0.00 0.00 3.41
467 468 1.068741 GATTTCCGCGTCCCTAGTCAT 59.931 52.381 4.92 0.00 0.00 3.06
468 469 1.766494 TTTCCGCGTCCCTAGTCATA 58.234 50.000 4.92 0.00 0.00 2.15
469 470 1.315690 TTCCGCGTCCCTAGTCATAG 58.684 55.000 4.92 0.00 0.00 2.23
470 471 0.182061 TCCGCGTCCCTAGTCATAGT 59.818 55.000 4.92 0.00 0.00 2.12
471 472 1.417517 TCCGCGTCCCTAGTCATAGTA 59.582 52.381 4.92 0.00 0.00 1.82
472 473 2.158769 TCCGCGTCCCTAGTCATAGTAA 60.159 50.000 4.92 0.00 0.00 2.24
473 474 2.225963 CCGCGTCCCTAGTCATAGTAAG 59.774 54.545 4.92 0.00 0.00 2.34
474 475 2.877168 CGCGTCCCTAGTCATAGTAAGT 59.123 50.000 0.00 0.00 0.00 2.24
475 476 4.060900 CGCGTCCCTAGTCATAGTAAGTA 58.939 47.826 0.00 0.00 0.00 2.24
476 477 4.152045 CGCGTCCCTAGTCATAGTAAGTAG 59.848 50.000 0.00 0.00 0.00 2.57
477 478 5.062528 GCGTCCCTAGTCATAGTAAGTAGT 58.937 45.833 0.00 0.00 0.00 2.73
478 479 5.049543 GCGTCCCTAGTCATAGTAAGTAGTG 60.050 48.000 0.00 0.00 0.00 2.74
479 480 5.049543 CGTCCCTAGTCATAGTAAGTAGTGC 60.050 48.000 0.00 0.00 0.00 4.40
480 481 6.063404 GTCCCTAGTCATAGTAAGTAGTGCT 58.937 44.000 0.00 0.00 0.00 4.40
481 482 7.222872 GTCCCTAGTCATAGTAAGTAGTGCTA 58.777 42.308 0.00 0.00 0.00 3.49
482 483 7.173047 GTCCCTAGTCATAGTAAGTAGTGCTAC 59.827 44.444 1.33 1.33 36.35 3.58
484 485 8.373981 CCCTAGTCATAGTAAGTAGTGCTACTA 58.626 40.741 11.74 0.00 44.96 1.82
497 498 7.130303 GTAGTGCTACTACCCAAAAGAAAAG 57.870 40.000 12.68 0.00 43.96 2.27
498 499 4.519350 AGTGCTACTACCCAAAAGAAAAGC 59.481 41.667 0.00 0.00 0.00 3.51
499 500 4.519350 GTGCTACTACCCAAAAGAAAAGCT 59.481 41.667 0.00 0.00 0.00 3.74
500 501 5.704053 GTGCTACTACCCAAAAGAAAAGCTA 59.296 40.000 0.00 0.00 0.00 3.32
501 502 5.938125 TGCTACTACCCAAAAGAAAAGCTAG 59.062 40.000 0.00 0.00 0.00 3.42
502 503 6.171213 GCTACTACCCAAAAGAAAAGCTAGA 58.829 40.000 0.00 0.00 0.00 2.43
503 504 6.824196 GCTACTACCCAAAAGAAAAGCTAGAT 59.176 38.462 0.00 0.00 0.00 1.98
504 505 7.011576 GCTACTACCCAAAAGAAAAGCTAGATC 59.988 40.741 0.00 0.00 0.00 2.75
505 506 6.779860 ACTACCCAAAAGAAAAGCTAGATCA 58.220 36.000 0.00 0.00 0.00 2.92
506 507 7.231467 ACTACCCAAAAGAAAAGCTAGATCAA 58.769 34.615 0.00 0.00 0.00 2.57
507 508 6.976934 ACCCAAAAGAAAAGCTAGATCAAA 57.023 33.333 0.00 0.00 0.00 2.69
508 509 7.544804 ACCCAAAAGAAAAGCTAGATCAAAT 57.455 32.000 0.00 0.00 0.00 2.32
509 510 7.966812 ACCCAAAAGAAAAGCTAGATCAAATT 58.033 30.769 0.00 0.00 0.00 1.82
510 511 8.090831 ACCCAAAAGAAAAGCTAGATCAAATTC 58.909 33.333 0.00 0.00 0.00 2.17
511 512 8.090214 CCCAAAAGAAAAGCTAGATCAAATTCA 58.910 33.333 0.00 0.00 0.00 2.57
512 513 8.919661 CCAAAAGAAAAGCTAGATCAAATTCAC 58.080 33.333 0.00 0.00 0.00 3.18
513 514 8.919661 CAAAAGAAAAGCTAGATCAAATTCACC 58.080 33.333 0.00 0.00 0.00 4.02
514 515 6.428385 AGAAAAGCTAGATCAAATTCACCG 57.572 37.500 0.00 0.00 0.00 4.94
515 516 5.355350 AGAAAAGCTAGATCAAATTCACCGG 59.645 40.000 0.00 0.00 0.00 5.28
516 517 4.487714 AAGCTAGATCAAATTCACCGGA 57.512 40.909 9.46 0.00 0.00 5.14
517 518 4.696479 AGCTAGATCAAATTCACCGGAT 57.304 40.909 9.46 0.00 0.00 4.18
518 519 5.041191 AGCTAGATCAAATTCACCGGATT 57.959 39.130 9.46 0.00 0.00 3.01
519 520 5.440610 AGCTAGATCAAATTCACCGGATTT 58.559 37.500 9.46 0.00 0.00 2.17
520 521 5.888161 AGCTAGATCAAATTCACCGGATTTT 59.112 36.000 9.46 0.00 0.00 1.82
521 522 5.973565 GCTAGATCAAATTCACCGGATTTTG 59.026 40.000 9.46 12.14 41.97 2.44
525 526 4.541779 TCAAATTCACCGGATTTTGAACG 58.458 39.130 9.46 0.37 44.25 3.95
526 527 2.629639 ATTCACCGGATTTTGAACGC 57.370 45.000 9.46 0.00 34.61 4.84
527 528 1.600023 TTCACCGGATTTTGAACGCT 58.400 45.000 9.46 0.00 0.00 5.07
528 529 1.153353 TCACCGGATTTTGAACGCTC 58.847 50.000 9.46 0.00 0.00 5.03
529 530 1.156736 CACCGGATTTTGAACGCTCT 58.843 50.000 9.46 0.00 0.00 4.09
530 531 1.535462 CACCGGATTTTGAACGCTCTT 59.465 47.619 9.46 0.00 0.00 2.85
531 532 1.804748 ACCGGATTTTGAACGCTCTTC 59.195 47.619 9.46 0.00 0.00 2.87
532 533 1.804151 CCGGATTTTGAACGCTCTTCA 59.196 47.619 0.00 0.00 0.00 3.02
533 534 2.420022 CCGGATTTTGAACGCTCTTCAT 59.580 45.455 0.00 0.00 0.00 2.57
534 535 3.419915 CGGATTTTGAACGCTCTTCATG 58.580 45.455 0.00 0.00 0.00 3.07
535 536 3.174375 GGATTTTGAACGCTCTTCATGC 58.826 45.455 0.00 0.00 0.00 4.06
536 537 3.366273 GGATTTTGAACGCTCTTCATGCA 60.366 43.478 0.00 0.00 0.00 3.96
537 538 3.921119 TTTTGAACGCTCTTCATGCAT 57.079 38.095 0.00 0.00 0.00 3.96
538 539 2.905959 TTGAACGCTCTTCATGCATG 57.094 45.000 21.07 21.07 0.00 4.06
539 540 1.812235 TGAACGCTCTTCATGCATGT 58.188 45.000 25.43 4.14 0.00 3.21
540 541 2.153645 TGAACGCTCTTCATGCATGTT 58.846 42.857 25.43 11.11 0.00 2.71
541 542 3.333804 TGAACGCTCTTCATGCATGTTA 58.666 40.909 25.43 14.11 0.00 2.41
542 543 3.125146 TGAACGCTCTTCATGCATGTTAC 59.875 43.478 25.43 11.27 0.00 2.50
543 544 2.977914 ACGCTCTTCATGCATGTTACT 58.022 42.857 25.43 1.41 0.00 2.24
544 545 2.932614 ACGCTCTTCATGCATGTTACTC 59.067 45.455 25.43 12.44 0.00 2.59
545 546 2.286294 CGCTCTTCATGCATGTTACTCC 59.714 50.000 25.43 10.42 0.00 3.85
546 547 2.615912 GCTCTTCATGCATGTTACTCCC 59.384 50.000 25.43 6.67 0.00 4.30
547 548 3.683847 GCTCTTCATGCATGTTACTCCCT 60.684 47.826 25.43 0.00 0.00 4.20
548 549 4.125703 CTCTTCATGCATGTTACTCCCTC 58.874 47.826 25.43 0.00 0.00 4.30
549 550 3.118261 TCTTCATGCATGTTACTCCCTCC 60.118 47.826 25.43 0.00 0.00 4.30
550 551 1.138859 TCATGCATGTTACTCCCTCCG 59.861 52.381 25.43 0.00 0.00 4.63
551 552 1.134401 CATGCATGTTACTCCCTCCGT 60.134 52.381 18.91 0.00 0.00 4.69
552 553 0.981183 TGCATGTTACTCCCTCCGTT 59.019 50.000 0.00 0.00 0.00 4.44
553 554 1.066430 TGCATGTTACTCCCTCCGTTC 60.066 52.381 0.00 0.00 0.00 3.95
554 555 1.742750 GCATGTTACTCCCTCCGTTCC 60.743 57.143 0.00 0.00 0.00 3.62
555 556 0.822164 ATGTTACTCCCTCCGTTCCG 59.178 55.000 0.00 0.00 0.00 4.30
556 557 0.251297 TGTTACTCCCTCCGTTCCGA 60.251 55.000 0.00 0.00 0.00 4.55
557 558 0.890683 GTTACTCCCTCCGTTCCGAA 59.109 55.000 0.00 0.00 0.00 4.30
558 559 1.479730 GTTACTCCCTCCGTTCCGAAT 59.520 52.381 0.00 0.00 0.00 3.34
559 560 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
560 561 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
561 562 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
562 563 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
563 564 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
564 565 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
565 566 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
566 567 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
567 568 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
568 569 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
569 570 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
570 571 2.471749 CGTTCCGAATTACTTGTCGCAC 60.472 50.000 0.00 0.00 35.93 5.34
571 572 1.342555 TCCGAATTACTTGTCGCACG 58.657 50.000 0.00 0.00 35.93 5.34
572 573 1.065358 CCGAATTACTTGTCGCACGT 58.935 50.000 0.00 0.00 35.93 4.49
573 574 2.095314 TCCGAATTACTTGTCGCACGTA 60.095 45.455 0.00 0.00 35.93 3.57
574 575 2.855963 CCGAATTACTTGTCGCACGTAT 59.144 45.455 0.00 0.00 35.93 3.06
575 576 3.301579 CCGAATTACTTGTCGCACGTATG 60.302 47.826 0.00 0.00 35.93 2.39
576 577 3.544682 CGAATTACTTGTCGCACGTATGA 59.455 43.478 0.00 0.00 0.00 2.15
577 578 4.030865 CGAATTACTTGTCGCACGTATGAA 59.969 41.667 0.00 0.00 0.00 2.57
578 579 5.276207 CGAATTACTTGTCGCACGTATGAAT 60.276 40.000 0.00 0.00 0.00 2.57
579 580 4.833469 TTACTTGTCGCACGTATGAATG 57.167 40.909 0.00 0.00 0.00 2.67
580 581 2.683968 ACTTGTCGCACGTATGAATGT 58.316 42.857 0.00 0.00 0.00 2.71
581 582 3.840468 ACTTGTCGCACGTATGAATGTA 58.160 40.909 0.00 0.00 0.00 2.29
582 583 4.430007 ACTTGTCGCACGTATGAATGTAT 58.570 39.130 0.00 0.00 0.00 2.29
583 584 4.503007 ACTTGTCGCACGTATGAATGTATC 59.497 41.667 0.00 0.00 0.00 2.24
584 585 4.301637 TGTCGCACGTATGAATGTATCT 57.698 40.909 0.00 0.00 0.00 1.98
585 586 5.427036 TGTCGCACGTATGAATGTATCTA 57.573 39.130 0.00 0.00 0.00 1.98
586 587 5.449304 TGTCGCACGTATGAATGTATCTAG 58.551 41.667 0.00 0.00 0.00 2.43
587 588 5.237779 TGTCGCACGTATGAATGTATCTAGA 59.762 40.000 0.00 0.00 0.00 2.43
588 589 6.072673 TGTCGCACGTATGAATGTATCTAGAT 60.073 38.462 10.73 10.73 0.00 1.98
589 590 6.249471 GTCGCACGTATGAATGTATCTAGATG 59.751 42.308 15.79 0.00 0.00 2.90
590 591 6.072673 TCGCACGTATGAATGTATCTAGATGT 60.073 38.462 15.79 0.00 0.00 3.06
591 592 7.118680 TCGCACGTATGAATGTATCTAGATGTA 59.881 37.037 15.79 4.44 0.00 2.29
592 593 7.910683 CGCACGTATGAATGTATCTAGATGTAT 59.089 37.037 15.79 6.61 0.00 2.29
593 594 9.574458 GCACGTATGAATGTATCTAGATGTATT 57.426 33.333 15.79 14.21 0.00 1.89
619 620 9.547753 TTTAGTTCTAGATACATCCATTTCAGC 57.452 33.333 0.00 0.00 0.00 4.26
620 621 6.219473 AGTTCTAGATACATCCATTTCAGCG 58.781 40.000 0.00 0.00 0.00 5.18
621 622 6.040955 AGTTCTAGATACATCCATTTCAGCGA 59.959 38.462 0.00 0.00 0.00 4.93
622 623 5.773575 TCTAGATACATCCATTTCAGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
623 624 3.384668 AGATACATCCATTTCAGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
624 625 2.951457 TACATCCATTTCAGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
625 626 1.645034 ACATCCATTTCAGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
626 627 1.066858 ACATCCATTTCAGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
627 628 2.165641 ACATCCATTTCAGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
628 629 3.186909 CATCCATTTCAGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
629 630 3.520290 TCCATTTCAGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
630 631 3.857052 TCCATTTCAGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
631 632 4.250464 TCCATTTCAGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
632 633 4.092821 TCCATTTCAGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
633 634 4.334443 CATTTCAGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
634 635 3.306917 TTCAGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
635 636 3.306917 TCAGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
636 637 2.991190 TCAGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
637 638 1.990563 AGCGACGAGTAATTTGGAACG 59.009 47.619 0.00 0.00 0.00 3.95
638 639 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
639 640 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
640 641 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
641 642 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
642 643 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
643 644 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
644 645 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
645 646 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
646 647 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
647 648 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
648 649 1.719529 TTTGGAACGGAGGGAGTACA 58.280 50.000 0.00 0.00 0.00 2.90
649 650 1.946984 TTGGAACGGAGGGAGTACAT 58.053 50.000 0.00 0.00 0.00 2.29
650 651 1.481871 TGGAACGGAGGGAGTACATC 58.518 55.000 0.00 0.00 0.00 3.06
696 697 4.166919 CCAGATCTACAATTTCCCCCTCTT 59.833 45.833 0.00 0.00 0.00 2.85
907 913 1.699634 CACCTTTCTTCCTCCTCCACA 59.300 52.381 0.00 0.00 0.00 4.17
959 966 1.521450 GCAAGCAGCCACTCACACAT 61.521 55.000 0.00 0.00 37.23 3.21
1022 1029 1.646189 GAGAAGTCGACCAAGATGGC 58.354 55.000 13.01 0.00 42.67 4.40
1027 1034 4.812476 CGACCAAGATGGCGGCGA 62.812 66.667 12.98 0.00 42.67 5.54
1478 1494 0.102300 TACTCGTAGCGTGCATGCAT 59.898 50.000 31.36 18.67 37.31 3.96
1479 1495 1.274770 CTCGTAGCGTGCATGCATG 59.725 57.895 31.36 31.36 37.31 4.06
1571 1587 3.483558 CGCTTAATTACGTCGTTAGGTCC 59.516 47.826 1.78 0.00 0.00 4.46
1578 1594 1.743958 ACGTCGTTAGGTCCATCTCTG 59.256 52.381 0.00 0.00 0.00 3.35
1586 1602 1.433879 GTCCATCTCTGTCGGTCGG 59.566 63.158 0.00 0.00 0.00 4.79
1698 1715 7.204604 GTGGTATGCAATGATGAAATGAATGA 58.795 34.615 0.00 0.00 0.00 2.57
1750 1775 5.647589 TCACTTGTTAATTACGAGCTCGAT 58.352 37.500 40.58 26.02 41.33 3.59
1778 1803 2.665165 TGGTTGGAACAGCAAACTCAT 58.335 42.857 0.00 0.00 42.95 2.90
1806 1831 4.634004 TGTTTTGGTCGGAGTATATTGCTG 59.366 41.667 0.00 0.00 0.00 4.41
1892 1917 5.448654 CCATCACCATTGGAGATTTCCTAA 58.551 41.667 12.36 0.00 44.36 2.69
1933 1958 6.832384 AGATATCTTGAACGGTACTGGAGTAA 59.168 38.462 6.65 0.00 31.52 2.24
1968 1993 6.048732 AGGGAAGAAGAAAGAGATGTCTTC 57.951 41.667 5.45 5.47 46.73 2.87
2004 2029 0.251608 AAGCCCAATTAACACGGCCT 60.252 50.000 0.00 0.00 42.66 5.19
2005 2030 0.965363 AGCCCAATTAACACGGCCTG 60.965 55.000 0.00 0.21 42.66 4.85
2029 2054 5.396101 GGTTAATTAGCTACTCCCTCCGTTT 60.396 44.000 0.00 0.00 0.00 3.60
2030 2055 4.838904 AATTAGCTACTCCCTCCGTTTT 57.161 40.909 0.00 0.00 0.00 2.43
2034 2059 2.572104 AGCTACTCCCTCCGTTTTCATT 59.428 45.455 0.00 0.00 0.00 2.57
2036 2061 3.756963 GCTACTCCCTCCGTTTTCATTTT 59.243 43.478 0.00 0.00 0.00 1.82
2041 2066 7.114866 ACTCCCTCCGTTTTCATTTTAAAAA 57.885 32.000 4.44 0.00 30.53 1.94
2070 2098 2.554032 AGTCCTTCCGTCTTGCAAAATG 59.446 45.455 0.00 0.00 0.00 2.32
2077 2105 6.349280 CCTTCCGTCTTGCAAAATGATCTTAA 60.349 38.462 0.00 0.00 0.00 1.85
2108 2136 4.006319 ACGGTGGAAGTAGTACTGTACTC 58.994 47.826 22.79 14.48 40.14 2.59
2109 2137 4.260170 CGGTGGAAGTAGTACTGTACTCT 58.740 47.826 22.79 16.23 40.14 3.24
2148 2178 3.882888 GACAGAGGATGAAAAACACCACA 59.117 43.478 0.00 0.00 0.00 4.17
2164 2194 2.027561 ACCACAGCTCGGCAATAGTAAA 60.028 45.455 0.00 0.00 0.00 2.01
2168 2198 4.391830 CACAGCTCGGCAATAGTAAAAAGA 59.608 41.667 0.00 0.00 0.00 2.52
2206 2236 5.560966 TCAAAACTGAAAAGAAAGAGCGT 57.439 34.783 0.00 0.00 0.00 5.07
2301 2331 2.914289 GCTGCAGGCTGTAGGGAT 59.086 61.111 29.72 0.00 38.06 3.85
2302 2332 1.525535 GCTGCAGGCTGTAGGGATG 60.526 63.158 29.72 9.32 38.06 3.51
2303 2333 1.147824 CTGCAGGCTGTAGGGATGG 59.852 63.158 23.09 0.00 0.00 3.51
2304 2334 2.335092 CTGCAGGCTGTAGGGATGGG 62.335 65.000 23.09 0.00 0.00 4.00
2305 2335 3.125376 GCAGGCTGTAGGGATGGGG 62.125 68.421 17.16 0.00 0.00 4.96
2306 2336 2.039405 AGGCTGTAGGGATGGGGG 60.039 66.667 0.00 0.00 0.00 5.40
2328 2360 0.037734 GGGGGTGGGAGTAACTGTTG 59.962 60.000 2.69 0.00 0.00 3.33
2352 2384 6.256975 TGTCGCATTTATGTACATTACCTCAC 59.743 38.462 14.77 4.37 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.914834 TGGAAAATATACTGGTACTAGCAATTT 57.085 29.630 6.09 7.09 0.00 1.82
3 4 9.914834 AAATGGAAAATATACTGGTACTAGCAA 57.085 29.630 6.09 0.00 0.00 3.91
4 5 9.914834 AAAATGGAAAATATACTGGTACTAGCA 57.085 29.630 6.09 0.00 0.00 3.49
18 19 9.832445 AGAGACGCTAGAATAAAATGGAAAATA 57.168 29.630 0.00 0.00 0.00 1.40
19 20 8.738645 AGAGACGCTAGAATAAAATGGAAAAT 57.261 30.769 0.00 0.00 0.00 1.82
34 35 2.292292 GCCTTTCTCCTAGAGACGCTAG 59.708 54.545 6.27 6.27 45.12 3.42
35 36 2.299521 GCCTTTCTCCTAGAGACGCTA 58.700 52.381 0.00 0.00 38.51 4.26
36 37 1.107945 GCCTTTCTCCTAGAGACGCT 58.892 55.000 0.00 0.00 38.51 5.07
37 38 0.248702 CGCCTTTCTCCTAGAGACGC 60.249 60.000 0.00 0.00 38.51 5.19
38 39 1.096416 ACGCCTTTCTCCTAGAGACG 58.904 55.000 0.00 0.00 38.51 4.18
39 40 3.596310 AAACGCCTTTCTCCTAGAGAC 57.404 47.619 0.00 0.00 38.51 3.36
40 41 3.306780 CCAAAACGCCTTTCTCCTAGAGA 60.307 47.826 0.00 0.00 36.86 3.10
41 42 3.003480 CCAAAACGCCTTTCTCCTAGAG 58.997 50.000 0.00 0.00 0.00 2.43
42 43 2.635915 TCCAAAACGCCTTTCTCCTAGA 59.364 45.455 0.00 0.00 0.00 2.43
43 44 3.003480 CTCCAAAACGCCTTTCTCCTAG 58.997 50.000 0.00 0.00 0.00 3.02
44 45 2.290071 CCTCCAAAACGCCTTTCTCCTA 60.290 50.000 0.00 0.00 0.00 2.94
45 46 1.545651 CCTCCAAAACGCCTTTCTCCT 60.546 52.381 0.00 0.00 0.00 3.69
46 47 0.881796 CCTCCAAAACGCCTTTCTCC 59.118 55.000 0.00 0.00 0.00 3.71
47 48 0.241213 GCCTCCAAAACGCCTTTCTC 59.759 55.000 0.00 0.00 0.00 2.87
48 49 1.179174 GGCCTCCAAAACGCCTTTCT 61.179 55.000 0.00 0.00 39.70 2.52
49 50 1.289066 GGCCTCCAAAACGCCTTTC 59.711 57.895 0.00 0.00 39.70 2.62
50 51 2.561037 CGGCCTCCAAAACGCCTTT 61.561 57.895 0.00 0.00 40.70 3.11
51 52 2.983592 CGGCCTCCAAAACGCCTT 60.984 61.111 0.00 0.00 40.70 4.35
52 53 3.901797 CTCGGCCTCCAAAACGCCT 62.902 63.158 0.00 0.00 40.70 5.52
53 54 3.431725 CTCGGCCTCCAAAACGCC 61.432 66.667 0.00 0.00 39.41 5.68
54 55 4.103103 GCTCGGCCTCCAAAACGC 62.103 66.667 0.00 0.00 0.00 4.84
55 56 1.515521 AAAGCTCGGCCTCCAAAACG 61.516 55.000 0.00 0.00 0.00 3.60
56 57 1.530323 TAAAGCTCGGCCTCCAAAAC 58.470 50.000 0.00 0.00 0.00 2.43
57 58 2.091541 CATAAAGCTCGGCCTCCAAAA 58.908 47.619 0.00 0.00 0.00 2.44
58 59 1.681780 CCATAAAGCTCGGCCTCCAAA 60.682 52.381 0.00 0.00 0.00 3.28
59 60 0.107214 CCATAAAGCTCGGCCTCCAA 60.107 55.000 0.00 0.00 0.00 3.53
60 61 0.980754 TCCATAAAGCTCGGCCTCCA 60.981 55.000 0.00 0.00 0.00 3.86
61 62 0.250081 CTCCATAAAGCTCGGCCTCC 60.250 60.000 0.00 0.00 0.00 4.30
62 63 0.250081 CCTCCATAAAGCTCGGCCTC 60.250 60.000 0.00 0.00 0.00 4.70
63 64 1.832912 CCTCCATAAAGCTCGGCCT 59.167 57.895 0.00 0.00 0.00 5.19
64 65 1.894282 GCCTCCATAAAGCTCGGCC 60.894 63.158 0.00 0.00 0.00 6.13
65 66 1.894282 GGCCTCCATAAAGCTCGGC 60.894 63.158 0.00 0.00 36.83 5.54
66 67 0.181350 AAGGCCTCCATAAAGCTCGG 59.819 55.000 5.23 0.00 0.00 4.63
67 68 2.044123 AAAGGCCTCCATAAAGCTCG 57.956 50.000 5.23 0.00 0.00 5.03
68 69 6.471233 AAAATAAAGGCCTCCATAAAGCTC 57.529 37.500 5.23 0.00 0.00 4.09
69 70 6.874278 AAAAATAAAGGCCTCCATAAAGCT 57.126 33.333 5.23 0.00 0.00 3.74
138 139 7.385778 ACACGTAACATACAGGCATATTTTT 57.614 32.000 0.00 0.00 0.00 1.94
139 140 6.995511 ACACGTAACATACAGGCATATTTT 57.004 33.333 0.00 0.00 0.00 1.82
140 141 8.495361 TTTACACGTAACATACAGGCATATTT 57.505 30.769 0.00 0.00 0.00 1.40
141 142 8.495361 TTTTACACGTAACATACAGGCATATT 57.505 30.769 0.00 0.00 0.00 1.28
142 143 7.767198 ACTTTTACACGTAACATACAGGCATAT 59.233 33.333 0.00 0.00 0.00 1.78
143 144 7.098477 ACTTTTACACGTAACATACAGGCATA 58.902 34.615 0.00 0.00 0.00 3.14
144 145 5.935789 ACTTTTACACGTAACATACAGGCAT 59.064 36.000 0.00 0.00 0.00 4.40
145 146 5.299148 ACTTTTACACGTAACATACAGGCA 58.701 37.500 0.00 0.00 0.00 4.75
146 147 5.851047 ACTTTTACACGTAACATACAGGC 57.149 39.130 0.00 0.00 0.00 4.85
147 148 7.872163 TGTACTTTTACACGTAACATACAGG 57.128 36.000 0.00 0.00 32.98 4.00
148 149 9.131416 TCATGTACTTTTACACGTAACATACAG 57.869 33.333 0.00 5.96 41.12 2.74
149 150 9.642327 ATCATGTACTTTTACACGTAACATACA 57.358 29.630 0.00 8.46 41.12 2.29
150 151 9.895894 CATCATGTACTTTTACACGTAACATAC 57.104 33.333 0.00 0.00 41.12 2.39
151 152 9.857957 TCATCATGTACTTTTACACGTAACATA 57.142 29.630 0.00 0.00 41.12 2.29
152 153 8.766000 TCATCATGTACTTTTACACGTAACAT 57.234 30.769 0.00 0.00 41.12 2.71
153 154 8.590719 TTCATCATGTACTTTTACACGTAACA 57.409 30.769 0.00 0.00 41.12 2.41
168 169 9.288124 CGCAACTCAAAAATATTTCATCATGTA 57.712 29.630 0.10 0.00 0.00 2.29
169 170 8.028354 TCGCAACTCAAAAATATTTCATCATGT 58.972 29.630 0.10 0.00 0.00 3.21
170 171 8.316046 GTCGCAACTCAAAAATATTTCATCATG 58.684 33.333 0.10 0.00 0.00 3.07
171 172 7.489113 GGTCGCAACTCAAAAATATTTCATCAT 59.511 33.333 0.10 0.00 0.00 2.45
172 173 6.806249 GGTCGCAACTCAAAAATATTTCATCA 59.194 34.615 0.10 0.00 0.00 3.07
173 174 7.008628 CAGGTCGCAACTCAAAAATATTTCATC 59.991 37.037 0.10 0.00 0.00 2.92
174 175 6.808212 CAGGTCGCAACTCAAAAATATTTCAT 59.192 34.615 0.10 0.00 0.00 2.57
175 176 6.148948 CAGGTCGCAACTCAAAAATATTTCA 58.851 36.000 0.10 0.00 0.00 2.69
176 177 6.149633 ACAGGTCGCAACTCAAAAATATTTC 58.850 36.000 0.10 0.00 0.00 2.17
177 178 6.084326 ACAGGTCGCAACTCAAAAATATTT 57.916 33.333 0.00 0.00 0.00 1.40
178 179 5.705609 ACAGGTCGCAACTCAAAAATATT 57.294 34.783 0.00 0.00 0.00 1.28
179 180 5.703592 TGTACAGGTCGCAACTCAAAAATAT 59.296 36.000 0.00 0.00 0.00 1.28
180 181 5.057819 TGTACAGGTCGCAACTCAAAAATA 58.942 37.500 0.00 0.00 0.00 1.40
181 182 3.880490 TGTACAGGTCGCAACTCAAAAAT 59.120 39.130 0.00 0.00 0.00 1.82
182 183 3.271729 TGTACAGGTCGCAACTCAAAAA 58.728 40.909 0.00 0.00 0.00 1.94
183 184 2.907634 TGTACAGGTCGCAACTCAAAA 58.092 42.857 0.00 0.00 0.00 2.44
184 185 2.605837 TGTACAGGTCGCAACTCAAA 57.394 45.000 0.00 0.00 0.00 2.69
185 186 2.605837 TTGTACAGGTCGCAACTCAA 57.394 45.000 0.00 0.00 0.00 3.02
186 187 2.605837 TTTGTACAGGTCGCAACTCA 57.394 45.000 0.00 0.00 0.00 3.41
187 188 3.955771 TTTTTGTACAGGTCGCAACTC 57.044 42.857 0.00 0.00 0.00 3.01
204 205 5.602145 TCCCAGACCATGAATTTGTCTTTTT 59.398 36.000 0.00 0.00 37.25 1.94
205 206 5.147032 TCCCAGACCATGAATTTGTCTTTT 58.853 37.500 0.00 0.00 37.25 2.27
206 207 4.739793 TCCCAGACCATGAATTTGTCTTT 58.260 39.130 0.00 0.00 37.25 2.52
207 208 4.338879 CTCCCAGACCATGAATTTGTCTT 58.661 43.478 0.00 0.00 37.25 3.01
208 209 3.308688 CCTCCCAGACCATGAATTTGTCT 60.309 47.826 0.00 0.00 39.86 3.41
209 210 3.019564 CCTCCCAGACCATGAATTTGTC 58.980 50.000 0.00 0.00 0.00 3.18
210 211 2.649312 TCCTCCCAGACCATGAATTTGT 59.351 45.455 0.00 0.00 0.00 2.83
211 212 3.370840 TCCTCCCAGACCATGAATTTG 57.629 47.619 0.00 0.00 0.00 2.32
212 213 3.528905 TCATCCTCCCAGACCATGAATTT 59.471 43.478 0.00 0.00 0.00 1.82
213 214 3.125656 TCATCCTCCCAGACCATGAATT 58.874 45.455 0.00 0.00 0.00 2.17
214 215 2.780414 TCATCCTCCCAGACCATGAAT 58.220 47.619 0.00 0.00 0.00 2.57
215 216 2.268796 TCATCCTCCCAGACCATGAA 57.731 50.000 0.00 0.00 0.00 2.57
216 217 2.268796 TTCATCCTCCCAGACCATGA 57.731 50.000 0.00 0.00 0.00 3.07
217 218 3.649981 ACTATTCATCCTCCCAGACCATG 59.350 47.826 0.00 0.00 0.00 3.66
218 219 3.946824 ACTATTCATCCTCCCAGACCAT 58.053 45.455 0.00 0.00 0.00 3.55
219 220 3.421394 ACTATTCATCCTCCCAGACCA 57.579 47.619 0.00 0.00 0.00 4.02
220 221 5.087323 TGATACTATTCATCCTCCCAGACC 58.913 45.833 0.00 0.00 0.00 3.85
221 222 6.212388 ACATGATACTATTCATCCTCCCAGAC 59.788 42.308 0.00 0.00 34.09 3.51
222 223 6.212187 CACATGATACTATTCATCCTCCCAGA 59.788 42.308 0.00 0.00 34.09 3.86
223 224 6.013898 ACACATGATACTATTCATCCTCCCAG 60.014 42.308 0.00 0.00 34.09 4.45
224 225 5.846164 ACACATGATACTATTCATCCTCCCA 59.154 40.000 0.00 0.00 34.09 4.37
225 226 6.365970 ACACATGATACTATTCATCCTCCC 57.634 41.667 0.00 0.00 34.09 4.30
226 227 9.778741 TTTAACACATGATACTATTCATCCTCC 57.221 33.333 0.00 0.00 34.09 4.30
232 233 8.952278 GGGTTGTTTAACACATGATACTATTCA 58.048 33.333 0.00 0.00 40.03 2.57
233 234 8.403236 GGGGTTGTTTAACACATGATACTATTC 58.597 37.037 0.00 0.00 42.12 1.75
234 235 7.891183 TGGGGTTGTTTAACACATGATACTATT 59.109 33.333 0.00 0.00 42.12 1.73
235 236 7.406916 TGGGGTTGTTTAACACATGATACTAT 58.593 34.615 0.00 0.00 42.12 2.12
236 237 6.780901 TGGGGTTGTTTAACACATGATACTA 58.219 36.000 0.00 0.00 42.12 1.82
237 238 5.636123 TGGGGTTGTTTAACACATGATACT 58.364 37.500 0.00 0.00 42.12 2.12
238 239 5.708230 TCTGGGGTTGTTTAACACATGATAC 59.292 40.000 0.00 0.00 42.12 2.24
239 240 5.882040 TCTGGGGTTGTTTAACACATGATA 58.118 37.500 0.00 0.00 42.12 2.15
240 241 4.735369 TCTGGGGTTGTTTAACACATGAT 58.265 39.130 0.00 0.00 42.12 2.45
241 242 4.171878 TCTGGGGTTGTTTAACACATGA 57.828 40.909 0.00 0.00 42.12 3.07
242 243 5.467035 AATCTGGGGTTGTTTAACACATG 57.533 39.130 0.00 0.00 42.12 3.21
243 244 7.673926 AGATAAATCTGGGGTTGTTTAACACAT 59.326 33.333 0.00 0.00 42.12 3.21
244 245 7.007723 AGATAAATCTGGGGTTGTTTAACACA 58.992 34.615 0.00 0.00 42.12 3.72
245 246 7.462571 AGATAAATCTGGGGTTGTTTAACAC 57.537 36.000 0.00 0.00 39.55 3.32
246 247 8.485578 AAAGATAAATCTGGGGTTGTTTAACA 57.514 30.769 0.00 0.00 36.51 2.41
247 248 9.772973 AAAAAGATAAATCTGGGGTTGTTTAAC 57.227 29.630 0.00 0.00 37.19 2.01
270 271 1.272212 GAAATGAGGGCTGCGGAAAAA 59.728 47.619 0.00 0.00 0.00 1.94
271 272 0.887933 GAAATGAGGGCTGCGGAAAA 59.112 50.000 0.00 0.00 0.00 2.29
272 273 0.251121 TGAAATGAGGGCTGCGGAAA 60.251 50.000 0.00 0.00 0.00 3.13
273 274 0.251121 TTGAAATGAGGGCTGCGGAA 60.251 50.000 0.00 0.00 0.00 4.30
274 275 0.034186 ATTGAAATGAGGGCTGCGGA 60.034 50.000 0.00 0.00 0.00 5.54
275 276 0.101759 CATTGAAATGAGGGCTGCGG 59.898 55.000 0.00 0.00 38.70 5.69
276 277 0.813184 ACATTGAAATGAGGGCTGCG 59.187 50.000 9.94 0.00 39.67 5.18
277 278 4.660789 AATACATTGAAATGAGGGCTGC 57.339 40.909 9.94 0.00 39.67 5.25
278 279 8.872845 GTTTAAAATACATTGAAATGAGGGCTG 58.127 33.333 9.94 0.00 39.67 4.85
279 280 8.815912 AGTTTAAAATACATTGAAATGAGGGCT 58.184 29.630 9.94 0.00 39.67 5.19
280 281 8.872845 CAGTTTAAAATACATTGAAATGAGGGC 58.127 33.333 9.94 0.00 39.67 5.19
312 313 7.555914 ATGAAGGCATAATACACATGTGTGTAA 59.444 33.333 36.01 22.45 46.53 2.41
313 314 7.012232 CATGAAGGCATAATACACATGTGTGTA 59.988 37.037 36.01 27.30 46.78 2.90
314 315 5.887598 ATGAAGGCATAATACACATGTGTGT 59.112 36.000 36.01 28.95 46.15 3.72
315 316 6.183360 ACATGAAGGCATAATACACATGTGTG 60.183 38.462 36.01 22.21 42.90 3.82
316 317 5.887598 ACATGAAGGCATAATACACATGTGT 59.112 36.000 32.47 32.47 42.90 3.72
317 318 6.381481 ACATGAAGGCATAATACACATGTG 57.619 37.500 24.25 24.25 42.90 3.21
318 319 9.964354 ATATACATGAAGGCATAATACACATGT 57.036 29.630 0.00 0.00 45.20 3.21
321 322 9.657419 CAGATATACATGAAGGCATAATACACA 57.343 33.333 0.00 0.00 32.27 3.72
322 323 9.658799 ACAGATATACATGAAGGCATAATACAC 57.341 33.333 0.00 0.00 32.27 2.90
401 402 6.721208 AGTGAGCCCTCTAAATTCAAATTTGA 59.279 34.615 16.91 16.91 38.90 2.69
402 403 6.810182 CAGTGAGCCCTCTAAATTCAAATTTG 59.190 38.462 12.15 12.15 38.90 2.32
403 404 6.071165 CCAGTGAGCCCTCTAAATTCAAATTT 60.071 38.462 6.04 6.04 41.24 1.82
404 405 5.420104 CCAGTGAGCCCTCTAAATTCAAATT 59.580 40.000 0.00 0.00 0.00 1.82
405 406 4.952335 CCAGTGAGCCCTCTAAATTCAAAT 59.048 41.667 0.00 0.00 0.00 2.32
406 407 4.042809 TCCAGTGAGCCCTCTAAATTCAAA 59.957 41.667 0.00 0.00 0.00 2.69
407 408 3.587061 TCCAGTGAGCCCTCTAAATTCAA 59.413 43.478 0.00 0.00 0.00 2.69
408 409 3.181329 TCCAGTGAGCCCTCTAAATTCA 58.819 45.455 0.00 0.00 0.00 2.57
409 410 3.802866 CTCCAGTGAGCCCTCTAAATTC 58.197 50.000 0.00 0.00 0.00 2.17
410 411 3.922171 CTCCAGTGAGCCCTCTAAATT 57.078 47.619 0.00 0.00 0.00 1.82
430 431 2.751837 CCCTTTTGGAGCTCGGGC 60.752 66.667 10.30 0.00 44.07 6.13
431 432 3.077907 TCCCTTTTGGAGCTCGGG 58.922 61.111 15.53 15.53 44.07 5.14
439 440 0.170339 GACGCGGAAATCCCTTTTGG 59.830 55.000 12.47 0.00 39.97 3.28
440 441 0.170339 GGACGCGGAAATCCCTTTTG 59.830 55.000 12.47 0.00 0.00 2.44
441 442 2.563297 GGACGCGGAAATCCCTTTT 58.437 52.632 12.47 0.00 0.00 2.27
442 443 4.313819 GGACGCGGAAATCCCTTT 57.686 55.556 12.47 0.00 0.00 3.11
446 447 0.249363 GACTAGGGACGCGGAAATCC 60.249 60.000 12.47 8.18 0.00 3.01
447 448 0.458669 TGACTAGGGACGCGGAAATC 59.541 55.000 12.47 0.00 0.00 2.17
448 449 1.120530 ATGACTAGGGACGCGGAAAT 58.879 50.000 12.47 0.00 0.00 2.17
449 450 1.679680 CTATGACTAGGGACGCGGAAA 59.320 52.381 12.47 0.00 0.00 3.13
450 451 1.315690 CTATGACTAGGGACGCGGAA 58.684 55.000 12.47 0.00 0.00 4.30
451 452 0.182061 ACTATGACTAGGGACGCGGA 59.818 55.000 12.47 0.00 0.00 5.54
452 453 1.888215 TACTATGACTAGGGACGCGG 58.112 55.000 12.47 0.00 0.00 6.46
453 454 2.877168 ACTTACTATGACTAGGGACGCG 59.123 50.000 3.53 3.53 0.00 6.01
454 455 5.049543 CACTACTTACTATGACTAGGGACGC 60.050 48.000 0.00 0.00 0.00 5.19
455 456 5.049543 GCACTACTTACTATGACTAGGGACG 60.050 48.000 0.00 0.00 0.00 4.79
456 457 6.063404 AGCACTACTTACTATGACTAGGGAC 58.937 44.000 0.00 0.00 0.00 4.46
457 458 6.263412 AGCACTACTTACTATGACTAGGGA 57.737 41.667 0.00 0.00 0.00 4.20
458 459 7.225725 AGTAGCACTACTTACTATGACTAGGG 58.774 42.308 4.47 0.00 43.35 3.53
459 460 9.206870 GTAGTAGCACTACTTACTATGACTAGG 57.793 40.741 15.13 0.00 45.70 3.02
474 475 5.704053 GCTTTTCTTTTGGGTAGTAGCACTA 59.296 40.000 1.13 0.00 0.00 2.74
475 476 4.519350 GCTTTTCTTTTGGGTAGTAGCACT 59.481 41.667 1.13 0.00 0.00 4.40
476 477 4.519350 AGCTTTTCTTTTGGGTAGTAGCAC 59.481 41.667 1.13 0.00 0.00 4.40
477 478 4.725490 AGCTTTTCTTTTGGGTAGTAGCA 58.275 39.130 1.13 0.00 0.00 3.49
478 479 6.171213 TCTAGCTTTTCTTTTGGGTAGTAGC 58.829 40.000 0.00 0.00 33.30 3.58
479 480 8.041323 TGATCTAGCTTTTCTTTTGGGTAGTAG 58.959 37.037 0.00 0.00 33.30 2.57
480 481 7.913789 TGATCTAGCTTTTCTTTTGGGTAGTA 58.086 34.615 0.00 0.00 33.30 1.82
481 482 6.779860 TGATCTAGCTTTTCTTTTGGGTAGT 58.220 36.000 0.00 0.00 33.30 2.73
482 483 7.687941 TTGATCTAGCTTTTCTTTTGGGTAG 57.312 36.000 0.00 0.00 0.00 3.18
483 484 8.650143 ATTTGATCTAGCTTTTCTTTTGGGTA 57.350 30.769 0.00 0.00 0.00 3.69
484 485 6.976934 TTTGATCTAGCTTTTCTTTTGGGT 57.023 33.333 0.00 0.00 0.00 4.51
485 486 8.090214 TGAATTTGATCTAGCTTTTCTTTTGGG 58.910 33.333 0.00 0.00 0.00 4.12
486 487 8.919661 GTGAATTTGATCTAGCTTTTCTTTTGG 58.080 33.333 0.00 0.00 0.00 3.28
487 488 8.919661 GGTGAATTTGATCTAGCTTTTCTTTTG 58.080 33.333 0.00 0.00 0.00 2.44
488 489 7.809806 CGGTGAATTTGATCTAGCTTTTCTTTT 59.190 33.333 0.00 0.00 0.00 2.27
489 490 7.308435 CGGTGAATTTGATCTAGCTTTTCTTT 58.692 34.615 0.00 0.00 0.00 2.52
490 491 6.127897 CCGGTGAATTTGATCTAGCTTTTCTT 60.128 38.462 0.00 0.00 0.00 2.52
491 492 5.355350 CCGGTGAATTTGATCTAGCTTTTCT 59.645 40.000 0.00 0.00 0.00 2.52
492 493 5.354234 TCCGGTGAATTTGATCTAGCTTTTC 59.646 40.000 0.00 0.00 0.00 2.29
493 494 5.253330 TCCGGTGAATTTGATCTAGCTTTT 58.747 37.500 0.00 0.00 0.00 2.27
494 495 4.843728 TCCGGTGAATTTGATCTAGCTTT 58.156 39.130 0.00 0.00 0.00 3.51
495 496 4.487714 TCCGGTGAATTTGATCTAGCTT 57.512 40.909 0.00 0.00 0.00 3.74
496 497 4.696479 ATCCGGTGAATTTGATCTAGCT 57.304 40.909 0.00 0.00 0.00 3.32
497 498 5.757850 AAATCCGGTGAATTTGATCTAGC 57.242 39.130 0.00 0.00 0.00 3.42
498 499 7.320443 TCAAAATCCGGTGAATTTGATCTAG 57.680 36.000 16.75 0.00 42.58 2.43
499 500 7.535139 GTTCAAAATCCGGTGAATTTGATCTA 58.465 34.615 19.42 8.84 45.23 1.98
500 501 6.389906 GTTCAAAATCCGGTGAATTTGATCT 58.610 36.000 19.42 0.00 45.23 2.75
501 502 5.286082 CGTTCAAAATCCGGTGAATTTGATC 59.714 40.000 19.42 17.72 45.23 2.92
502 503 5.160641 CGTTCAAAATCCGGTGAATTTGAT 58.839 37.500 19.42 0.00 45.23 2.57
503 504 4.541779 CGTTCAAAATCCGGTGAATTTGA 58.458 39.130 16.75 16.75 44.61 2.69
504 505 3.121113 GCGTTCAAAATCCGGTGAATTTG 59.879 43.478 8.31 11.50 40.97 2.32
505 506 3.005367 AGCGTTCAAAATCCGGTGAATTT 59.995 39.130 8.31 1.45 36.23 1.82
506 507 2.556622 AGCGTTCAAAATCCGGTGAATT 59.443 40.909 8.31 0.00 36.23 2.17
507 508 2.159382 AGCGTTCAAAATCCGGTGAAT 58.841 42.857 8.31 0.00 36.23 2.57
508 509 1.533731 GAGCGTTCAAAATCCGGTGAA 59.466 47.619 0.00 0.30 31.80 3.18
509 510 1.153353 GAGCGTTCAAAATCCGGTGA 58.847 50.000 0.00 0.00 31.80 4.02
510 511 1.156736 AGAGCGTTCAAAATCCGGTG 58.843 50.000 0.00 0.00 31.80 4.94
511 512 1.804748 GAAGAGCGTTCAAAATCCGGT 59.195 47.619 0.00 0.00 34.69 5.28
512 513 1.804151 TGAAGAGCGTTCAAAATCCGG 59.196 47.619 1.01 0.00 0.00 5.14
513 514 3.419915 CATGAAGAGCGTTCAAAATCCG 58.580 45.455 8.40 0.00 31.55 4.18
514 515 3.174375 GCATGAAGAGCGTTCAAAATCC 58.826 45.455 8.40 0.00 31.55 3.01
515 516 3.825308 TGCATGAAGAGCGTTCAAAATC 58.175 40.909 8.40 0.00 33.85 2.17
516 517 3.921119 TGCATGAAGAGCGTTCAAAAT 57.079 38.095 8.40 0.00 33.85 1.82
517 518 3.004629 ACATGCATGAAGAGCGTTCAAAA 59.995 39.130 32.75 0.00 33.85 2.44
518 519 2.553602 ACATGCATGAAGAGCGTTCAAA 59.446 40.909 32.75 0.00 33.85 2.69
519 520 2.153645 ACATGCATGAAGAGCGTTCAA 58.846 42.857 32.75 0.00 33.85 2.69
520 521 1.812235 ACATGCATGAAGAGCGTTCA 58.188 45.000 32.75 6.96 33.85 3.18
521 522 2.907910 AACATGCATGAAGAGCGTTC 57.092 45.000 32.75 0.00 33.85 3.95
522 523 3.338249 AGTAACATGCATGAAGAGCGTT 58.662 40.909 32.75 16.47 33.85 4.84
523 524 2.932614 GAGTAACATGCATGAAGAGCGT 59.067 45.455 32.75 5.74 33.85 5.07
524 525 2.286294 GGAGTAACATGCATGAAGAGCG 59.714 50.000 32.75 4.95 33.85 5.03
525 526 2.615912 GGGAGTAACATGCATGAAGAGC 59.384 50.000 32.75 17.21 0.00 4.09
526 527 4.125703 GAGGGAGTAACATGCATGAAGAG 58.874 47.826 32.75 6.56 0.00 2.85
527 528 3.118261 GGAGGGAGTAACATGCATGAAGA 60.118 47.826 32.75 14.06 0.00 2.87
528 529 3.209410 GGAGGGAGTAACATGCATGAAG 58.791 50.000 32.75 7.38 0.00 3.02
529 530 2.419990 CGGAGGGAGTAACATGCATGAA 60.420 50.000 32.75 17.10 0.00 2.57
530 531 1.138859 CGGAGGGAGTAACATGCATGA 59.861 52.381 32.75 9.00 0.00 3.07
531 532 1.134401 ACGGAGGGAGTAACATGCATG 60.134 52.381 25.09 25.09 0.00 4.06
532 533 1.204146 ACGGAGGGAGTAACATGCAT 58.796 50.000 0.00 0.00 0.00 3.96
533 534 0.981183 AACGGAGGGAGTAACATGCA 59.019 50.000 0.00 0.00 0.00 3.96
534 535 1.653151 GAACGGAGGGAGTAACATGC 58.347 55.000 0.00 0.00 0.00 4.06
535 536 2.311124 GGAACGGAGGGAGTAACATG 57.689 55.000 0.00 0.00 0.00 3.21
550 551 2.471749 CGTGCGACAAGTAATTCGGAAC 60.472 50.000 0.00 0.00 37.32 3.62
551 552 1.722464 CGTGCGACAAGTAATTCGGAA 59.278 47.619 0.00 0.00 37.32 4.30
552 553 1.336148 ACGTGCGACAAGTAATTCGGA 60.336 47.619 0.00 0.00 35.73 4.55
553 554 1.065358 ACGTGCGACAAGTAATTCGG 58.935 50.000 0.00 0.00 35.73 4.30
554 555 3.544682 TCATACGTGCGACAAGTAATTCG 59.455 43.478 0.00 0.00 32.82 3.34
555 556 5.444586 TTCATACGTGCGACAAGTAATTC 57.555 39.130 0.00 0.00 32.82 2.17
556 557 5.350365 ACATTCATACGTGCGACAAGTAATT 59.650 36.000 0.00 0.00 32.82 1.40
557 558 4.868171 ACATTCATACGTGCGACAAGTAAT 59.132 37.500 0.00 0.53 32.82 1.89
558 559 4.239304 ACATTCATACGTGCGACAAGTAA 58.761 39.130 0.00 0.00 32.82 2.24
559 560 3.840468 ACATTCATACGTGCGACAAGTA 58.160 40.909 0.00 7.72 33.49 2.24
560 561 2.683968 ACATTCATACGTGCGACAAGT 58.316 42.857 0.00 0.00 0.00 3.16
561 562 4.740205 AGATACATTCATACGTGCGACAAG 59.260 41.667 0.00 0.00 0.00 3.16
562 563 4.678622 AGATACATTCATACGTGCGACAA 58.321 39.130 0.00 0.00 0.00 3.18
563 564 4.301637 AGATACATTCATACGTGCGACA 57.698 40.909 0.00 0.00 0.00 4.35
564 565 5.686834 TCTAGATACATTCATACGTGCGAC 58.313 41.667 0.00 0.00 0.00 5.19
565 566 5.934935 TCTAGATACATTCATACGTGCGA 57.065 39.130 0.00 0.00 0.00 5.10
566 567 6.086871 ACATCTAGATACATTCATACGTGCG 58.913 40.000 4.54 0.00 0.00 5.34
567 568 9.574458 AATACATCTAGATACATTCATACGTGC 57.426 33.333 4.54 0.00 0.00 5.34
593 594 9.547753 GCTGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
594 595 7.867909 CGCTGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
595 596 7.230712 TCGCTGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
596 597 6.040955 TCGCTGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
597 598 6.144724 GTCGCTGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 0.00 3.01
598 599 6.216569 GTCGCTGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 0.00 2.10
599 600 5.562890 CGTCGCTGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 0.00 2.43
600 601 4.618912 CGTCGCTGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 0.00 2.43
601 602 4.277423 TCGTCGCTGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 0.00 1.98
602 603 3.068165 TCGTCGCTGAAATGGATGTATCT 59.932 43.478 0.00 0.00 0.00 1.98
603 604 3.381045 TCGTCGCTGAAATGGATGTATC 58.619 45.455 0.00 0.00 0.00 2.24
604 605 3.181475 ACTCGTCGCTGAAATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
605 606 2.165641 ACTCGTCGCTGAAATGGATGTA 59.834 45.455 0.00 0.00 0.00 2.29
606 607 1.066858 ACTCGTCGCTGAAATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
607 608 1.645034 ACTCGTCGCTGAAATGGATG 58.355 50.000 0.00 0.00 0.00 3.51
608 609 3.520290 TTACTCGTCGCTGAAATGGAT 57.480 42.857 0.00 0.00 0.00 3.41
609 610 3.520290 ATTACTCGTCGCTGAAATGGA 57.480 42.857 0.00 0.00 0.00 3.41
610 611 4.334443 CAAATTACTCGTCGCTGAAATGG 58.666 43.478 0.00 0.00 0.00 3.16
611 612 4.092821 TCCAAATTACTCGTCGCTGAAATG 59.907 41.667 0.00 0.00 0.00 2.32
612 613 4.250464 TCCAAATTACTCGTCGCTGAAAT 58.750 39.130 0.00 0.00 0.00 2.17
613 614 3.655486 TCCAAATTACTCGTCGCTGAAA 58.345 40.909 0.00 0.00 0.00 2.69
614 615 3.306917 TCCAAATTACTCGTCGCTGAA 57.693 42.857 0.00 0.00 0.00 3.02
615 616 2.991190 GTTCCAAATTACTCGTCGCTGA 59.009 45.455 0.00 0.00 0.00 4.26
616 617 2.222508 CGTTCCAAATTACTCGTCGCTG 60.223 50.000 0.00 0.00 0.00 5.18
617 618 1.990563 CGTTCCAAATTACTCGTCGCT 59.009 47.619 0.00 0.00 0.00 4.93
618 619 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
619 620 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
620 621 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
621 622 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
622 623 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
623 624 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
624 625 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
625 626 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
626 627 3.839490 TGTACTCCCTCCGTTCCAAATTA 59.161 43.478 0.00 0.00 0.00 1.40
627 628 2.640826 TGTACTCCCTCCGTTCCAAATT 59.359 45.455 0.00 0.00 0.00 1.82
628 629 2.262637 TGTACTCCCTCCGTTCCAAAT 58.737 47.619 0.00 0.00 0.00 2.32
629 630 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
630 631 1.829222 GATGTACTCCCTCCGTTCCAA 59.171 52.381 0.00 0.00 0.00 3.53
631 632 1.481871 GATGTACTCCCTCCGTTCCA 58.518 55.000 0.00 0.00 0.00 3.53
632 633 0.751452 GGATGTACTCCCTCCGTTCC 59.249 60.000 0.00 0.00 38.19 3.62
633 634 1.409427 CTGGATGTACTCCCTCCGTTC 59.591 57.143 8.36 0.00 44.23 3.95
634 635 1.486211 CTGGATGTACTCCCTCCGTT 58.514 55.000 8.36 0.00 44.23 4.44
635 636 1.043673 GCTGGATGTACTCCCTCCGT 61.044 60.000 8.36 0.00 44.23 4.69
636 637 0.757188 AGCTGGATGTACTCCCTCCG 60.757 60.000 8.36 2.36 44.23 4.63
637 638 2.383442 TAGCTGGATGTACTCCCTCC 57.617 55.000 0.00 3.94 44.23 4.30
638 639 3.445805 GCTATAGCTGGATGTACTCCCTC 59.554 52.174 17.75 2.16 44.23 4.30
639 640 3.436243 GCTATAGCTGGATGTACTCCCT 58.564 50.000 17.75 3.43 44.23 4.20
640 641 3.878160 GCTATAGCTGGATGTACTCCC 57.122 52.381 17.75 3.66 44.23 4.30
667 668 3.871594 GGAAATTGTAGATCTGGTCGTGG 59.128 47.826 5.18 0.00 0.00 4.94
741 745 2.636403 CTGCCATCCTGTGATCTCCATA 59.364 50.000 0.00 0.00 0.00 2.74
907 913 1.761784 CTGCTTCTAGCTCTGTGGGAT 59.238 52.381 0.00 0.00 42.97 3.85
935 942 0.752743 TGAGTGGCTGCTTGCTTTGT 60.753 50.000 0.00 0.00 42.39 2.83
959 966 0.036010 GTGCTCTTGCTCCTGGCTAA 60.036 55.000 0.00 0.00 42.39 3.09
1027 1034 4.498520 CACGGCGAGGACGAGCAT 62.499 66.667 16.62 0.00 42.66 3.79
1479 1495 2.876368 ATAGCGCCCACAGAACCAGC 62.876 60.000 2.29 0.00 0.00 4.85
1480 1496 0.464036 TATAGCGCCCACAGAACCAG 59.536 55.000 2.29 0.00 0.00 4.00
1571 1587 1.062685 CGACCGACCGACAGAGATG 59.937 63.158 0.00 0.00 0.00 2.90
1578 1594 0.040067 ACTTAACACGACCGACCGAC 60.040 55.000 3.56 0.00 0.00 4.79
1586 1602 6.423001 ACAGATAACCAAGAACTTAACACGAC 59.577 38.462 0.00 0.00 0.00 4.34
1728 1750 5.950965 ATCGAGCTCGTAATTAACAAGTG 57.049 39.130 33.33 2.55 40.80 3.16
1778 1803 7.201661 GCAATATACTCCGACCAAAACACAATA 60.202 37.037 0.00 0.00 0.00 1.90
1806 1831 2.803451 CCAATCGACACTACTGAGCTC 58.197 52.381 6.82 6.82 0.00 4.09
1892 1917 5.987098 AGATATCTGTTGATGCACTTCAGT 58.013 37.500 3.89 0.00 34.32 3.41
1941 1966 6.215227 AGACATCTCTTTCTTCTTCCCTTCAT 59.785 38.462 0.00 0.00 0.00 2.57
1951 1976 5.571357 GTCGTCTGAAGACATCTCTTTCTTC 59.429 44.000 17.05 4.69 45.45 2.87
1968 1993 1.409412 CTTCCAACTCGTGTCGTCTG 58.591 55.000 0.00 0.00 0.00 3.51
2004 2029 3.640029 CGGAGGGAGTAGCTAATTAACCA 59.360 47.826 11.39 0.00 0.00 3.67
2005 2030 3.640498 ACGGAGGGAGTAGCTAATTAACC 59.360 47.826 0.00 0.00 0.00 2.85
2042 2067 3.813724 GCAAGACGGAAGGACTAGTTTTT 59.186 43.478 0.00 0.00 0.00 1.94
2044 2069 2.367567 TGCAAGACGGAAGGACTAGTTT 59.632 45.455 0.00 0.00 0.00 2.66
2045 2070 1.968493 TGCAAGACGGAAGGACTAGTT 59.032 47.619 0.00 0.00 0.00 2.24
2046 2071 1.629043 TGCAAGACGGAAGGACTAGT 58.371 50.000 0.00 0.00 0.00 2.57
2048 2073 3.478857 TTTTGCAAGACGGAAGGACTA 57.521 42.857 0.00 0.00 0.00 2.59
2049 2074 2.341846 TTTTGCAAGACGGAAGGACT 57.658 45.000 0.00 0.00 0.00 3.85
2050 2075 2.552315 TCATTTTGCAAGACGGAAGGAC 59.448 45.455 0.00 0.00 0.00 3.85
2052 2077 3.441572 AGATCATTTTGCAAGACGGAAGG 59.558 43.478 0.00 0.00 0.00 3.46
2053 2078 4.691860 AGATCATTTTGCAAGACGGAAG 57.308 40.909 0.00 0.00 0.00 3.46
2054 2079 6.567687 TTAAGATCATTTTGCAAGACGGAA 57.432 33.333 0.00 0.00 0.00 4.30
2070 2098 7.711339 ACTTCCACCGTCTCATAATTTAAGATC 59.289 37.037 0.00 0.00 0.00 2.75
2077 2105 5.934402 ACTACTTCCACCGTCTCATAATT 57.066 39.130 0.00 0.00 0.00 1.40
2148 2178 6.569179 TTTTCTTTTTACTATTGCCGAGCT 57.431 33.333 0.00 0.00 0.00 4.09
2206 2236 5.860611 TGTGGTAACTTCAAAGCTAGCTAA 58.139 37.500 19.70 8.02 37.61 3.09
2304 2334 3.895253 TTACTCCCACCCCCACCCC 62.895 68.421 0.00 0.00 0.00 4.95
2305 2335 2.204182 TTACTCCCACCCCCACCC 60.204 66.667 0.00 0.00 0.00 4.61
2306 2336 1.540617 AGTTACTCCCACCCCCACC 60.541 63.158 0.00 0.00 0.00 4.61
2328 2360 6.479001 AGTGAGGTAATGTACATAAATGCGAC 59.521 38.462 9.21 1.68 0.00 5.19
2352 2384 5.132897 ACTACTCCTCCGTATACGTAGAG 57.867 47.826 22.87 23.42 37.74 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.