Multiple sequence alignment - TraesCS3B01G201500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G201500 chr3B 100.000 5818 0 0 1001 6818 235861086 235866903 0.000000e+00 10744.0
1 TraesCS3B01G201500 chr3B 100.000 832 0 0 1 832 235860086 235860917 0.000000e+00 1537.0
2 TraesCS3B01G201500 chr3D 94.919 2598 84 15 3508 6094 158082163 158084723 0.000000e+00 4023.0
3 TraesCS3B01G201500 chr3D 96.900 871 26 1 2402 3272 158080993 158081862 0.000000e+00 1458.0
4 TraesCS3B01G201500 chr3D 98.645 738 7 3 1001 1736 158079502 158080238 0.000000e+00 1304.0
5 TraesCS3B01G201500 chr3D 95.537 605 19 2 1801 2404 158080240 158080837 0.000000e+00 961.0
6 TraesCS3B01G201500 chr3D 86.578 678 53 19 6154 6818 158084907 158085559 0.000000e+00 713.0
7 TraesCS3B01G201500 chr3D 86.648 352 22 16 490 832 158079171 158079506 3.890000e-97 366.0
8 TraesCS3B01G201500 chr3D 93.750 96 5 1 3384 3478 158081859 158081954 7.130000e-30 143.0
9 TraesCS3B01G201500 chr3D 95.122 41 2 0 5875 5915 364736010 364736050 1.590000e-06 65.8
10 TraesCS3B01G201500 chr3A 96.258 2325 76 5 3508 5824 169847327 169845006 0.000000e+00 3801.0
11 TraesCS3B01G201500 chr3A 96.640 744 16 5 1001 1736 169850899 169850157 0.000000e+00 1227.0
12 TraesCS3B01G201500 chr3A 96.636 654 21 1 2402 3055 169849413 169848761 0.000000e+00 1085.0
13 TraesCS3B01G201500 chr3A 94.718 549 18 4 1801 2345 169850155 169849614 0.000000e+00 843.0
14 TraesCS3B01G201500 chr3A 87.086 573 48 14 6099 6654 169844634 169844071 5.810000e-175 625.0
15 TraesCS3B01G201500 chr3A 87.609 460 38 13 35 481 169851735 169851282 3.650000e-142 516.0
16 TraesCS3B01G201500 chr3A 92.120 368 21 7 470 832 169851259 169850895 4.720000e-141 512.0
17 TraesCS3B01G201500 chr3A 92.945 326 17 3 5774 6094 169845022 169844698 2.880000e-128 470.0
18 TraesCS3B01G201500 chr3A 96.903 226 7 0 3047 3272 169847853 169847628 4.990000e-101 379.0
19 TraesCS3B01G201500 chr3A 97.561 41 1 0 5875 5915 486046438 486046478 3.410000e-08 71.3
20 TraesCS3B01G201500 chr7A 81.847 314 44 11 6451 6754 443978407 443978717 1.140000e-62 252.0
21 TraesCS3B01G201500 chr6D 96.721 122 3 1 3270 3390 36114632 36114511 1.160000e-47 202.0
22 TraesCS3B01G201500 chr5D 96.694 121 4 0 3268 3388 565900787 565900907 1.160000e-47 202.0
23 TraesCS3B01G201500 chr5D 94.488 127 5 2 3263 3388 566048411 566048286 1.940000e-45 195.0
24 TraesCS3B01G201500 chr4D 97.458 118 3 0 3270 3387 72256246 72256129 1.160000e-47 202.0
25 TraesCS3B01G201500 chr4D 95.238 126 5 1 3261 3386 428946371 428946495 1.500000e-46 198.0
26 TraesCS3B01G201500 chrUn 95.968 124 3 2 3266 3388 87827389 87827511 4.170000e-47 200.0
27 TraesCS3B01G201500 chrUn 95.968 124 3 2 3266 3388 309972434 309972556 4.170000e-47 200.0
28 TraesCS3B01G201500 chr4A 95.238 126 4 2 3265 3389 544199316 544199440 1.500000e-46 198.0
29 TraesCS3B01G201500 chr4A 91.304 69 4 2 1750 1817 623322155 623322088 7.280000e-15 93.5
30 TraesCS3B01G201500 chr4A 92.188 64 5 0 1750 1813 636017286 636017223 2.620000e-14 91.6
31 TraesCS3B01G201500 chr2D 95.122 123 6 0 3265 3387 651336734 651336612 1.940000e-45 195.0
32 TraesCS3B01G201500 chr7D 77.193 285 51 11 35 313 470221435 470221711 3.290000e-33 154.0
33 TraesCS3B01G201500 chr1D 76.963 191 38 5 94 280 463841409 463841221 3.360000e-18 104.0
34 TraesCS3B01G201500 chr5B 91.026 78 3 4 1750 1827 254355032 254355105 1.210000e-17 102.0
35 TraesCS3B01G201500 chr2B 96.491 57 2 0 1749 1805 407233986 407234042 2.020000e-15 95.3
36 TraesCS3B01G201500 chr2B 85.366 82 10 2 1750 1829 19866047 19865966 4.380000e-12 84.2
37 TraesCS3B01G201500 chr2B 100.000 28 0 0 452 479 41848701 41848728 1.200000e-02 52.8
38 TraesCS3B01G201500 chr4B 93.548 62 4 0 1750 1811 653214366 653214427 7.280000e-15 93.5
39 TraesCS3B01G201500 chr4B 88.235 51 5 1 5877 5926 506917727 506917777 7.380000e-05 60.2
40 TraesCS3B01G201500 chr1B 92.308 65 4 1 1750 1813 623687654 623687718 2.620000e-14 91.6
41 TraesCS3B01G201500 chr1B 96.296 54 2 0 1750 1803 286320024 286320077 9.420000e-14 89.8
42 TraesCS3B01G201500 chr6B 87.838 74 7 2 1750 1822 159990565 159990493 1.220000e-12 86.1
43 TraesCS3B01G201500 chr5A 86.301 73 8 2 238 310 667660842 667660912 2.040000e-10 78.7
44 TraesCS3B01G201500 chr5A 84.932 73 9 2 238 310 667703012 667703082 9.490000e-09 73.1
45 TraesCS3B01G201500 chr2A 88.136 59 6 1 6340 6397 26439776 26439834 1.230000e-07 69.4
46 TraesCS3B01G201500 chr1A 96.875 32 1 0 6295 6326 74348248 74348279 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G201500 chr3B 235860086 235866903 6817 False 6140.500000 10744 100.000000 1 6818 2 chr3B.!!$F1 6817
1 TraesCS3B01G201500 chr3D 158079171 158085559 6388 False 1281.142857 4023 93.282429 490 6818 7 chr3D.!!$F2 6328
2 TraesCS3B01G201500 chr3A 169844071 169851735 7664 True 1050.888889 3801 93.435000 35 6654 9 chr3A.!!$R1 6619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
831 901 0.620556 TCCAACCAGCAGATTCCTCC 59.379 55.00 0.00 0.00 0.00 4.30 F
1618 1697 4.067896 ACAAGATCAAGTTCGACAGCATT 58.932 39.13 0.00 0.00 0.00 3.56 F
3288 4463 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.00 5.23 0.00 44.66 2.17 F
3289 4464 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.00 5.23 0.00 44.66 1.40 F
3382 4557 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.00 13.64 4.95 46.06 4.20 F
3384 4559 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.00 13.64 0.00 46.06 3.85 F
4513 5870 0.108424 GTGTTTGGCAGCAACCACAA 60.108 50.00 0.00 0.00 40.19 3.33 F
4765 6128 0.598065 GGCTCCGACAACAAAGCAAT 59.402 50.00 0.00 0.00 36.47 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1780 1859 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89 R
3272 4447 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R
4399 5756 0.391130 CTTGATTTCCCGAGCCACGA 60.391 55.000 2.48 0.00 45.77 4.35 R
5320 6683 0.107945 CAGCACTCAGGAGCTTACCC 60.108 60.000 0.00 0.00 37.28 3.69 R
5322 6685 0.742635 GGCAGCACTCAGGAGCTTAC 60.743 60.000 0.00 0.00 37.28 2.34 R
5499 6862 1.737793 GGCAACTCATCCTGTAAACCG 59.262 52.381 0.00 0.00 0.00 4.44 R
5541 6906 0.106419 ACAAAGCAGGGGAAAACGGA 60.106 50.000 0.00 0.00 0.00 4.69 R
6236 7820 0.586802 GCTTCAAGACCACGTGGAAC 59.413 55.000 40.21 29.59 38.94 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.688073 TTTGTAGATCTCCTTGGAGTCTTT 57.312 37.500 19.18 7.97 0.00 2.52
24 25 5.667539 TGTAGATCTCCTTGGAGTCTTTG 57.332 43.478 19.18 0.00 0.00 2.77
25 26 5.087323 TGTAGATCTCCTTGGAGTCTTTGT 58.913 41.667 19.18 6.75 0.00 2.83
26 27 5.544176 TGTAGATCTCCTTGGAGTCTTTGTT 59.456 40.000 19.18 5.69 0.00 2.83
27 28 5.159273 AGATCTCCTTGGAGTCTTTGTTC 57.841 43.478 15.44 4.40 0.00 3.18
28 29 3.386768 TCTCCTTGGAGTCTTTGTTCG 57.613 47.619 15.44 0.00 0.00 3.95
29 30 2.698797 TCTCCTTGGAGTCTTTGTTCGT 59.301 45.455 15.44 0.00 0.00 3.85
30 31 3.060602 CTCCTTGGAGTCTTTGTTCGTC 58.939 50.000 8.45 0.00 0.00 4.20
31 32 2.698797 TCCTTGGAGTCTTTGTTCGTCT 59.301 45.455 0.00 0.00 0.00 4.18
32 33 3.134081 TCCTTGGAGTCTTTGTTCGTCTT 59.866 43.478 0.00 0.00 0.00 3.01
33 34 3.495001 CCTTGGAGTCTTTGTTCGTCTTC 59.505 47.826 0.00 0.00 0.00 2.87
40 41 5.051153 AGTCTTTGTTCGTCTTCTCCTTTC 58.949 41.667 0.00 0.00 0.00 2.62
44 45 5.924475 TTGTTCGTCTTCTCCTTTCAATC 57.076 39.130 0.00 0.00 0.00 2.67
46 47 6.340962 TGTTCGTCTTCTCCTTTCAATCTA 57.659 37.500 0.00 0.00 0.00 1.98
66 67 1.347707 ACACTTCTCTTCATGGGCGAA 59.652 47.619 0.00 0.00 0.00 4.70
67 68 2.005451 CACTTCTCTTCATGGGCGAAG 58.995 52.381 13.66 13.66 43.17 3.79
86 88 1.884235 GCTGTTGCTCTTGTGTAGGT 58.116 50.000 0.00 0.00 36.03 3.08
92 94 1.972198 CTCTTGTGTAGGTCCCGCA 59.028 57.895 0.00 0.00 0.00 5.69
109 111 4.003788 AGGGCCTCAACACGACGG 62.004 66.667 0.00 0.00 0.00 4.79
111 113 4.681978 GGCCTCAACACGACGGCT 62.682 66.667 0.00 0.00 37.78 5.52
122 124 2.162809 ACACGACGGCTTTTCAACTTTT 59.837 40.909 0.00 0.00 0.00 2.27
143 145 7.990314 ACTTTTTATTACAACAAGTTTGGCCAT 59.010 29.630 6.09 0.00 0.00 4.40
169 171 3.917760 GAGGGAGGGGCGATGACG 61.918 72.222 0.00 0.00 42.93 4.35
170 172 4.779733 AGGGAGGGGCGATGACGT 62.780 66.667 0.00 0.00 41.98 4.34
183 185 2.324860 GATGACGTCGACACACATTCA 58.675 47.619 17.16 7.76 0.00 2.57
192 194 2.072298 GACACACATTCAGCTCACTCC 58.928 52.381 0.00 0.00 0.00 3.85
212 214 2.289820 CCAGTGCTTATAGTCGTCGCTA 59.710 50.000 0.00 0.00 0.00 4.26
219 221 4.732938 GCTTATAGTCGTCGCTAGGTTGTT 60.733 45.833 0.00 0.00 0.00 2.83
229 231 1.400494 GCTAGGTTGTTTACGGGCATG 59.600 52.381 0.00 0.00 0.00 4.06
282 286 3.423749 ACTGTCATGGCATGATGAACAA 58.576 40.909 30.94 12.91 42.04 2.83
286 290 4.463186 TGTCATGGCATGATGAACAAATCA 59.537 37.500 30.94 18.26 42.04 2.57
290 294 6.935208 TCATGGCATGATGAACAAATCAAAAA 59.065 30.769 25.63 0.00 42.54 1.94
392 399 5.809464 TGCAATGCACGTTGATATTAGAAG 58.191 37.500 2.72 0.00 31.71 2.85
395 402 6.966632 GCAATGCACGTTGATATTAGAAGAAA 59.033 34.615 0.00 0.00 0.00 2.52
397 404 9.340695 CAATGCACGTTGATATTAGAAGAAAAA 57.659 29.630 0.00 0.00 0.00 1.94
401 408 8.798153 GCACGTTGATATTAGAAGAAAAATTGG 58.202 33.333 0.00 0.00 0.00 3.16
481 495 4.210328 TGGTACGATATTAATTGCACGCTG 59.790 41.667 0.00 0.00 0.00 5.18
522 570 7.155328 AGGTCATTGGATCGACATAGTTTATC 58.845 38.462 0.00 0.00 33.66 1.75
550 598 9.004717 CCGAGATTTGTTAGATATGTCTCTCTA 57.995 37.037 0.00 0.00 35.87 2.43
676 740 4.921470 ACATCCTAATCGAAACAACACG 57.079 40.909 0.00 0.00 0.00 4.49
682 746 2.383298 ATCGAAACAACACGCACTTG 57.617 45.000 0.00 0.00 0.00 3.16
773 837 3.959329 CTCGACCGGACCCCTCCTT 62.959 68.421 9.46 0.00 33.79 3.36
827 897 1.742268 GCTTCTCCAACCAGCAGATTC 59.258 52.381 0.00 0.00 33.45 2.52
828 898 2.363683 CTTCTCCAACCAGCAGATTCC 58.636 52.381 0.00 0.00 0.00 3.01
829 899 1.661463 TCTCCAACCAGCAGATTCCT 58.339 50.000 0.00 0.00 0.00 3.36
830 900 1.556911 TCTCCAACCAGCAGATTCCTC 59.443 52.381 0.00 0.00 0.00 3.71
831 901 0.620556 TCCAACCAGCAGATTCCTCC 59.379 55.000 0.00 0.00 0.00 4.30
1612 1691 4.446234 CGAAACACAAGATCAAGTTCGAC 58.554 43.478 0.00 0.00 0.00 4.20
1614 1693 5.409643 AAACACAAGATCAAGTTCGACAG 57.590 39.130 0.00 0.00 0.00 3.51
1618 1697 4.067896 ACAAGATCAAGTTCGACAGCATT 58.932 39.130 0.00 0.00 0.00 3.56
1736 1815 7.522236 GCTTGTCCTTGTTAACTGCTTTAATCT 60.522 37.037 7.22 0.00 32.17 2.40
1737 1816 7.817418 TGTCCTTGTTAACTGCTTTAATCTT 57.183 32.000 7.22 0.00 32.17 2.40
1738 1817 7.871853 TGTCCTTGTTAACTGCTTTAATCTTC 58.128 34.615 7.22 0.00 32.17 2.87
1739 1818 7.719633 TGTCCTTGTTAACTGCTTTAATCTTCT 59.280 33.333 7.22 0.00 32.17 2.85
1740 1819 9.216117 GTCCTTGTTAACTGCTTTAATCTTCTA 57.784 33.333 7.22 0.00 32.17 2.10
1741 1820 9.436957 TCCTTGTTAACTGCTTTAATCTTCTAG 57.563 33.333 7.22 0.00 32.17 2.43
1742 1821 9.436957 CCTTGTTAACTGCTTTAATCTTCTAGA 57.563 33.333 7.22 0.00 32.17 2.43
1792 1871 3.061322 TGGTGACAAGTATTTTCGGACG 58.939 45.455 0.00 0.00 37.44 4.79
1793 1872 2.414138 GGTGACAAGTATTTTCGGACGG 59.586 50.000 0.00 0.00 0.00 4.79
1794 1873 3.319755 GTGACAAGTATTTTCGGACGGA 58.680 45.455 0.00 0.00 0.00 4.69
1795 1874 3.367025 GTGACAAGTATTTTCGGACGGAG 59.633 47.826 0.00 0.00 0.00 4.63
1796 1875 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1797 1876 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1798 1877 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
1799 1878 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
1931 2012 6.238211 GCAGTGCTCAATACCAGTTACTAATG 60.238 42.308 8.18 0.00 0.00 1.90
1976 2057 8.585018 TCTTGTGTTGACATGATAGTTCTTAGA 58.415 33.333 0.00 0.00 32.71 2.10
2044 2125 3.501445 TGCTTTGCCATATTTTTGTTGCC 59.499 39.130 0.00 0.00 0.00 4.52
2116 2198 6.734137 TGATTGTATTATTTTTGCTAGCCCG 58.266 36.000 13.29 0.00 0.00 6.13
2119 2201 5.885881 TGTATTATTTTTGCTAGCCCGTTG 58.114 37.500 13.29 0.00 0.00 4.10
2135 2217 2.615493 CCGTTGCTCTCCATACCAACTT 60.615 50.000 0.00 0.00 36.36 2.66
2141 2223 4.041075 TGCTCTCCATACCAACTTAACACA 59.959 41.667 0.00 0.00 0.00 3.72
2304 2387 9.295825 ACTCCAACATTCAAGTTTATTACATCA 57.704 29.630 0.00 0.00 0.00 3.07
2335 2418 9.743057 TGAACAAACAATGGTTAAATAGTTCAG 57.257 29.630 9.01 0.00 35.82 3.02
2355 2454 8.906867 AGTTCAGAAGATTTGTTGATTTGAAGA 58.093 29.630 0.00 0.00 0.00 2.87
2356 2455 9.688592 GTTCAGAAGATTTGTTGATTTGAAGAT 57.311 29.630 0.00 0.00 0.00 2.40
2362 2461 9.603921 AAGATTTGTTGATTTGAAGATTTGTGT 57.396 25.926 0.00 0.00 0.00 3.72
2363 2462 9.252962 AGATTTGTTGATTTGAAGATTTGTGTC 57.747 29.630 0.00 0.00 0.00 3.67
2400 2499 4.401022 TCCATTCTCTTGCAGTTCACATT 58.599 39.130 0.00 0.00 0.00 2.71
2443 2702 5.652452 AGGAGAACACCCAAATTAACATAGC 59.348 40.000 0.00 0.00 0.00 2.97
2465 2724 4.627035 GCTGAACCATATTTTTCAACCTGC 59.373 41.667 0.00 0.00 31.41 4.85
2491 2750 9.478768 CTGCATAATGATTTAATGTTTGGCATA 57.521 29.630 0.00 0.00 36.67 3.14
2528 2787 4.735369 TGATTTCTTTTTACCAGCAGGGA 58.265 39.130 0.00 0.00 41.15 4.20
2606 2865 7.191425 AGCCCGAGCAATGAATATTTCATGTA 61.191 38.462 3.65 0.00 44.80 2.29
2706 2965 9.923143 AAACTTTATACAAGGCCTCAATTAAAC 57.077 29.630 5.23 0.00 0.00 2.01
2833 3092 6.183361 TGGAGAGACTGAGCTAGATACACATA 60.183 42.308 0.00 0.00 0.00 2.29
2876 3135 4.023291 TGTCACATATGTCAGAGGTGCTA 58.977 43.478 5.07 0.00 0.00 3.49
2916 3175 2.823154 TGTTGGGGCATAAGTACAAAGC 59.177 45.455 0.00 0.00 0.00 3.51
2918 3177 3.449746 TGGGGCATAAGTACAAAGCTT 57.550 42.857 0.00 0.00 0.00 3.74
2919 3178 4.577988 TGGGGCATAAGTACAAAGCTTA 57.422 40.909 0.00 0.00 33.59 3.09
2921 3180 3.883489 GGGGCATAAGTACAAAGCTTAGG 59.117 47.826 0.00 0.00 34.51 2.69
2922 3181 3.883489 GGGCATAAGTACAAAGCTTAGGG 59.117 47.826 0.00 0.00 32.74 3.53
2923 3182 4.524053 GGCATAAGTACAAAGCTTAGGGT 58.476 43.478 0.00 1.15 32.74 4.34
2924 3183 4.948004 GGCATAAGTACAAAGCTTAGGGTT 59.052 41.667 0.00 0.00 32.74 4.11
3062 4237 8.705594 AGAGTGCTATCTTAATTTTAGGCAGTA 58.294 33.333 0.00 0.00 33.17 2.74
3125 4300 8.345565 GGCAAATTTGTACTACAGAGATATTGG 58.654 37.037 19.03 0.00 0.00 3.16
3145 4320 7.587037 ATTGGAGTGGATACCAAATATTGTG 57.413 36.000 0.00 0.00 46.87 3.33
3272 4447 6.603201 CCTTATGTTTGGACCATCAATGTACT 59.397 38.462 0.00 0.00 0.00 2.73
3273 4448 7.201732 CCTTATGTTTGGACCATCAATGTACTC 60.202 40.741 0.00 0.00 0.00 2.59
3274 4449 4.331968 TGTTTGGACCATCAATGTACTCC 58.668 43.478 0.00 0.00 0.00 3.85
3275 4450 3.644966 TTGGACCATCAATGTACTCCC 57.355 47.619 0.00 0.00 0.00 4.30
3276 4451 2.845659 TGGACCATCAATGTACTCCCT 58.154 47.619 0.00 0.00 0.00 4.20
3277 4452 2.771943 TGGACCATCAATGTACTCCCTC 59.228 50.000 0.00 0.00 0.00 4.30
3278 4453 2.104963 GGACCATCAATGTACTCCCTCC 59.895 54.545 0.00 0.00 0.00 4.30
3279 4454 1.762957 ACCATCAATGTACTCCCTCCG 59.237 52.381 0.00 0.00 0.00 4.63
3280 4455 1.762957 CCATCAATGTACTCCCTCCGT 59.237 52.381 0.00 0.00 0.00 4.69
3281 4456 2.224066 CCATCAATGTACTCCCTCCGTC 60.224 54.545 0.00 0.00 0.00 4.79
3282 4457 1.481871 TCAATGTACTCCCTCCGTCC 58.518 55.000 0.00 0.00 0.00 4.79
3283 4458 0.102481 CAATGTACTCCCTCCGTCCG 59.898 60.000 0.00 0.00 0.00 4.79
3284 4459 1.041447 AATGTACTCCCTCCGTCCGG 61.041 60.000 0.00 0.00 0.00 5.14
3285 4460 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
3286 4461 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3287 4462 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3288 4463 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3289 4464 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3290 4465 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3291 4466 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3292 4467 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3293 4468 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3294 4469 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3295 4470 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3296 4471 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3297 4472 2.094390 TCCGTCCGGAAATACTTGTCAG 60.094 50.000 5.23 0.00 42.05 3.51
3298 4473 2.094390 CCGTCCGGAAATACTTGTCAGA 60.094 50.000 5.23 0.00 37.50 3.27
3299 4474 3.581755 CGTCCGGAAATACTTGTCAGAA 58.418 45.455 5.23 0.00 0.00 3.02
3300 4475 3.991773 CGTCCGGAAATACTTGTCAGAAA 59.008 43.478 5.23 0.00 0.00 2.52
3301 4476 4.449743 CGTCCGGAAATACTTGTCAGAAAA 59.550 41.667 5.23 0.00 0.00 2.29
3302 4477 5.049954 CGTCCGGAAATACTTGTCAGAAAAA 60.050 40.000 5.23 0.00 0.00 1.94
3303 4478 6.348213 CGTCCGGAAATACTTGTCAGAAAAAT 60.348 38.462 5.23 0.00 0.00 1.82
3304 4479 6.801862 GTCCGGAAATACTTGTCAGAAAAATG 59.198 38.462 5.23 0.00 0.00 2.32
3305 4480 5.572896 CCGGAAATACTTGTCAGAAAAATGC 59.427 40.000 0.00 0.00 0.00 3.56
3306 4481 6.148948 CGGAAATACTTGTCAGAAAAATGCA 58.851 36.000 0.00 0.00 0.00 3.96
3307 4482 6.808212 CGGAAATACTTGTCAGAAAAATGCAT 59.192 34.615 0.00 0.00 0.00 3.96
3308 4483 7.967854 CGGAAATACTTGTCAGAAAAATGCATA 59.032 33.333 0.00 0.00 0.00 3.14
3309 4484 9.638239 GGAAATACTTGTCAGAAAAATGCATAA 57.362 29.630 0.00 0.00 0.00 1.90
3315 4490 8.776470 ACTTGTCAGAAAAATGCATAAAAATGG 58.224 29.630 0.00 0.00 0.00 3.16
3316 4491 8.899427 TTGTCAGAAAAATGCATAAAAATGGA 57.101 26.923 0.00 0.00 0.00 3.41
3317 4492 9.504708 TTGTCAGAAAAATGCATAAAAATGGAT 57.495 25.926 0.00 0.00 33.93 3.41
3318 4493 8.937884 TGTCAGAAAAATGCATAAAAATGGATG 58.062 29.630 0.00 0.00 32.82 3.51
3319 4494 8.938906 GTCAGAAAAATGCATAAAAATGGATGT 58.061 29.630 0.00 0.00 32.82 3.06
3329 4504 9.851686 TGCATAAAAATGGATGTATCTAGAACT 57.148 29.630 0.00 0.00 0.00 3.01
3347 4522 9.117183 TCTAGAACTAAAATACGTCTAGATGCA 57.883 33.333 12.04 0.00 32.48 3.96
3348 4523 9.900710 CTAGAACTAAAATACGTCTAGATGCAT 57.099 33.333 12.04 0.00 0.00 3.96
3349 4524 8.804688 AGAACTAAAATACGTCTAGATGCATC 57.195 34.615 19.37 19.37 0.00 3.91
3350 4525 7.868415 AGAACTAAAATACGTCTAGATGCATCC 59.132 37.037 23.06 6.84 0.00 3.51
3351 4526 7.050970 ACTAAAATACGTCTAGATGCATCCA 57.949 36.000 23.06 9.05 0.00 3.41
3352 4527 7.671302 ACTAAAATACGTCTAGATGCATCCAT 58.329 34.615 23.06 8.39 0.00 3.41
3353 4528 8.150945 ACTAAAATACGTCTAGATGCATCCATT 58.849 33.333 23.06 7.62 0.00 3.16
3354 4529 7.426929 AAAATACGTCTAGATGCATCCATTC 57.573 36.000 23.06 10.63 0.00 2.67
3355 4530 3.393089 ACGTCTAGATGCATCCATTCC 57.607 47.619 23.06 6.95 0.00 3.01
3356 4531 2.968574 ACGTCTAGATGCATCCATTCCT 59.031 45.455 23.06 6.10 0.00 3.36
3357 4532 4.152647 ACGTCTAGATGCATCCATTCCTA 58.847 43.478 23.06 6.97 0.00 2.94
3358 4533 4.021894 ACGTCTAGATGCATCCATTCCTAC 60.022 45.833 23.06 10.61 0.00 3.18
3359 4534 4.489810 GTCTAGATGCATCCATTCCTACG 58.510 47.826 23.06 0.00 0.00 3.51
3360 4535 4.218635 GTCTAGATGCATCCATTCCTACGA 59.781 45.833 23.06 0.00 0.00 3.43
3361 4536 3.393089 AGATGCATCCATTCCTACGAC 57.607 47.619 23.06 0.00 0.00 4.34
3362 4537 2.700371 AGATGCATCCATTCCTACGACA 59.300 45.455 23.06 0.00 0.00 4.35
3363 4538 3.134623 AGATGCATCCATTCCTACGACAA 59.865 43.478 23.06 0.00 0.00 3.18
3364 4539 2.905075 TGCATCCATTCCTACGACAAG 58.095 47.619 0.00 0.00 0.00 3.16
3365 4540 2.236146 TGCATCCATTCCTACGACAAGT 59.764 45.455 0.00 0.00 0.00 3.16
3366 4541 3.449377 TGCATCCATTCCTACGACAAGTA 59.551 43.478 0.00 0.00 0.00 2.24
3367 4542 4.100963 TGCATCCATTCCTACGACAAGTAT 59.899 41.667 0.00 0.00 34.34 2.12
3368 4543 5.057149 GCATCCATTCCTACGACAAGTATT 58.943 41.667 0.00 0.00 34.34 1.89
3369 4544 5.527582 GCATCCATTCCTACGACAAGTATTT 59.472 40.000 0.00 0.00 34.34 1.40
3370 4545 6.292919 GCATCCATTCCTACGACAAGTATTTC 60.293 42.308 0.00 0.00 34.34 2.17
3371 4546 5.667466 TCCATTCCTACGACAAGTATTTCC 58.333 41.667 0.00 0.00 34.34 3.13
3372 4547 4.506654 CCATTCCTACGACAAGTATTTCCG 59.493 45.833 0.00 0.00 34.34 4.30
3373 4548 3.788333 TCCTACGACAAGTATTTCCGG 57.212 47.619 0.00 0.00 34.34 5.14
3374 4549 3.355378 TCCTACGACAAGTATTTCCGGA 58.645 45.455 0.00 0.00 34.34 5.14
3375 4550 3.129287 TCCTACGACAAGTATTTCCGGAC 59.871 47.826 1.83 0.00 34.34 4.79
3376 4551 1.986698 ACGACAAGTATTTCCGGACG 58.013 50.000 1.83 3.25 0.00 4.79
3377 4552 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
3378 4553 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
3379 4554 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
3380 4555 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3381 4556 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3382 4557 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3383 4558 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3384 4559 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3385 4560 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3386 4561 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
3426 4601 1.093159 CAATCAGGAAGCAGACCAGC 58.907 55.000 0.00 0.00 0.00 4.85
3438 4614 3.724914 GACCAGCGCCTAGTCCTGC 62.725 68.421 2.29 0.00 0.00 4.85
3494 4670 3.130280 CATGTAGATGCCACCTATGCA 57.870 47.619 0.00 0.00 43.97 3.96
3495 4671 2.916702 TGTAGATGCCACCTATGCAG 57.083 50.000 0.00 0.00 42.92 4.41
3497 4673 2.103094 TGTAGATGCCACCTATGCAGAC 59.897 50.000 0.00 0.00 42.92 3.51
3498 4674 1.504912 AGATGCCACCTATGCAGACT 58.495 50.000 0.00 0.00 42.92 3.24
3499 4675 2.682594 AGATGCCACCTATGCAGACTA 58.317 47.619 0.00 0.00 42.92 2.59
3500 4676 3.246301 AGATGCCACCTATGCAGACTAT 58.754 45.455 0.00 0.00 42.92 2.12
3501 4677 2.916702 TGCCACCTATGCAGACTATG 57.083 50.000 0.00 0.00 34.05 2.23
3502 4678 1.417517 TGCCACCTATGCAGACTATGG 59.582 52.381 0.00 0.00 34.05 2.74
3503 4679 1.879796 GCCACCTATGCAGACTATGGC 60.880 57.143 13.87 13.87 43.89 4.40
3504 4680 1.696336 CCACCTATGCAGACTATGGCT 59.304 52.381 0.00 0.00 0.00 4.75
3505 4681 2.899900 CCACCTATGCAGACTATGGCTA 59.100 50.000 0.00 0.00 0.00 3.93
3506 4682 3.056250 CCACCTATGCAGACTATGGCTAG 60.056 52.174 0.00 0.00 0.00 3.42
3507 4683 3.056250 CACCTATGCAGACTATGGCTAGG 60.056 52.174 0.00 0.00 37.15 3.02
3508 4684 2.093764 CCTATGCAGACTATGGCTAGGC 60.094 54.545 9.85 9.85 32.60 3.93
3509 4685 1.427809 ATGCAGACTATGGCTAGGCA 58.572 50.000 22.54 22.54 35.19 4.75
3510 4686 0.755079 TGCAGACTATGGCTAGGCAG 59.245 55.000 24.38 14.05 35.19 4.85
3651 5007 0.249826 GGAGCTGTGCCTGCTAGATC 60.250 60.000 0.00 4.44 38.70 2.75
3652 5008 0.752054 GAGCTGTGCCTGCTAGATCT 59.248 55.000 0.00 0.00 38.70 2.75
4280 5637 2.158957 TGACAGACACCAACCAGTTCTC 60.159 50.000 0.00 0.00 0.00 2.87
4291 5648 0.961358 CCAGTTCTCGAGACCGGAGT 60.961 60.000 16.36 0.00 36.24 3.85
4327 5684 1.516110 ATGGCAGAGGTAGAAGGCAT 58.484 50.000 0.00 0.00 41.66 4.40
4399 5756 5.834742 TCAGAATAGCATTGCAAATATGGGT 59.165 36.000 11.91 0.00 0.00 4.51
4426 5783 0.597568 CGGGAAATCAAGTTGCTGCA 59.402 50.000 0.00 0.00 0.00 4.41
4492 5849 1.687368 GGCCAAAGCTCTGGGATGAAT 60.687 52.381 8.49 0.00 39.73 2.57
4513 5870 0.108424 GTGTTTGGCAGCAACCACAA 60.108 50.000 0.00 0.00 40.19 3.33
4571 5934 4.655762 GGTTCCTGTTTTCAAGAAGCTT 57.344 40.909 0.00 0.00 42.20 3.74
4765 6128 0.598065 GGCTCCGACAACAAAGCAAT 59.402 50.000 0.00 0.00 36.47 3.56
5008 6371 0.968405 TGGTTGAAAGAATGCAGGCC 59.032 50.000 0.00 0.00 0.00 5.19
5056 6419 5.004922 ACTCGATGTTCAAAGAGATCTCC 57.995 43.478 19.30 3.35 34.98 3.71
5065 6428 3.117093 TCAAAGAGATCTCCGGGGAGTAT 60.117 47.826 19.30 0.00 42.49 2.12
5074 6437 0.754217 CCGGGGAGTATCGTCAAGGA 60.754 60.000 0.00 0.00 34.37 3.36
5146 6509 2.548057 GCACCTCGTTCTTGAAATGTCA 59.452 45.455 0.00 0.00 0.00 3.58
5158 6521 2.811431 TGAAATGTCAAGGTTACTGCCG 59.189 45.455 0.00 0.00 0.00 5.69
5197 6560 2.038295 GGAGCTTGCTGATGCCTACTAT 59.962 50.000 0.00 0.00 38.71 2.12
5230 6593 3.701664 CCTTACAAGCCTCCAAGGAAAT 58.298 45.455 0.00 0.00 40.02 2.17
5320 6683 1.929836 GCTGCACAGGATTCGTTAGAG 59.070 52.381 0.00 0.00 0.00 2.43
5322 6685 1.207089 TGCACAGGATTCGTTAGAGGG 59.793 52.381 0.00 0.00 0.00 4.30
5499 6862 2.665794 GCAAGGCGAAGAAGTAAACTGC 60.666 50.000 0.00 0.00 0.00 4.40
5513 6878 2.851263 AACTGCGGTTTACAGGATGA 57.149 45.000 4.68 0.00 39.55 2.92
5514 6879 2.386661 ACTGCGGTTTACAGGATGAG 57.613 50.000 0.00 0.00 39.69 2.90
5531 6896 2.282040 GTTGCCACCTGAGCTGCT 60.282 61.111 0.00 0.00 0.00 4.24
5541 6906 0.940126 CTGAGCTGCTGTGAAAACGT 59.060 50.000 7.01 0.00 0.00 3.99
5544 6909 1.082756 GCTGCTGTGAAAACGTCCG 60.083 57.895 0.00 0.00 0.00 4.79
5555 6920 1.449726 AAACGTCCGTTTTCCCCTGC 61.450 55.000 11.70 0.00 44.84 4.85
5558 6923 1.170290 CGTCCGTTTTCCCCTGCTTT 61.170 55.000 0.00 0.00 0.00 3.51
5567 6932 2.270986 CCCCTGCTTTGTGTCTGGC 61.271 63.158 0.00 0.00 0.00 4.85
5582 6947 3.257933 GGCTTGTTGAGGCGACTG 58.742 61.111 0.00 0.00 44.43 3.51
5584 6949 0.884704 GGCTTGTTGAGGCGACTGAA 60.885 55.000 0.00 0.00 44.43 3.02
5598 6963 0.535102 ACTGAAAAGGCCGTGGAGTG 60.535 55.000 0.00 0.00 0.00 3.51
5635 7000 5.344743 TTCTGTTTCTCTGTGTCTGAACT 57.655 39.130 0.00 0.00 0.00 3.01
5642 7007 7.552687 TGTTTCTCTGTGTCTGAACTTTATGTT 59.447 33.333 0.00 0.00 42.38 2.71
5672 7037 4.768145 CGTAATTGTGTCGTGAATGTTGT 58.232 39.130 0.00 0.00 0.00 3.32
5686 7053 6.147821 CGTGAATGTTGTGAAGAAGGAATAGT 59.852 38.462 0.00 0.00 0.00 2.12
5688 7055 8.999431 GTGAATGTTGTGAAGAAGGAATAGTTA 58.001 33.333 0.00 0.00 0.00 2.24
5691 7058 9.739276 AATGTTGTGAAGAAGGAATAGTTATGA 57.261 29.630 0.00 0.00 0.00 2.15
5741 7108 4.819105 TTGTATTTCGGGATGTCTCTGT 57.181 40.909 0.00 0.00 0.00 3.41
5856 7284 9.314321 CTATGTCCAACCTAATACAAAGTACAG 57.686 37.037 0.00 0.00 0.00 2.74
5857 7285 5.935789 TGTCCAACCTAATACAAAGTACAGC 59.064 40.000 0.00 0.00 0.00 4.40
5858 7286 5.353400 GTCCAACCTAATACAAAGTACAGCC 59.647 44.000 0.00 0.00 0.00 4.85
5859 7287 5.249852 TCCAACCTAATACAAAGTACAGCCT 59.750 40.000 0.00 0.00 0.00 4.58
5860 7288 5.585047 CCAACCTAATACAAAGTACAGCCTC 59.415 44.000 0.00 0.00 0.00 4.70
5861 7289 6.407202 CAACCTAATACAAAGTACAGCCTCT 58.593 40.000 0.00 0.00 0.00 3.69
5862 7290 5.978814 ACCTAATACAAAGTACAGCCTCTG 58.021 41.667 0.00 0.00 37.52 3.35
5864 7292 6.013639 ACCTAATACAAAGTACAGCCTCTGTT 60.014 38.462 4.70 0.00 42.59 3.16
5865 7293 6.535508 CCTAATACAAAGTACAGCCTCTGTTC 59.464 42.308 4.70 0.32 42.59 3.18
5866 7294 3.127425 ACAAAGTACAGCCTCTGTTCC 57.873 47.619 4.70 0.00 42.59 3.62
5867 7295 2.706190 ACAAAGTACAGCCTCTGTTCCT 59.294 45.455 4.70 0.00 42.59 3.36
5868 7296 3.901844 ACAAAGTACAGCCTCTGTTCCTA 59.098 43.478 4.70 0.00 42.59 2.94
5869 7297 4.347000 ACAAAGTACAGCCTCTGTTCCTAA 59.653 41.667 4.70 0.00 42.59 2.69
5870 7298 4.538746 AAGTACAGCCTCTGTTCCTAAC 57.461 45.455 4.70 0.00 42.59 2.34
5871 7299 3.507411 AGTACAGCCTCTGTTCCTAACA 58.493 45.455 4.70 0.00 42.59 2.41
5902 7330 6.830838 ACTCCCTCAGATCCAAATTAATTGAC 59.169 38.462 0.39 0.00 41.85 3.18
5917 7345 7.772332 ATTAATTGACGGAGCTTTAGTACAG 57.228 36.000 0.00 0.00 0.00 2.74
5948 7376 0.319211 TGGTGTACCAAAGCTCGTCG 60.319 55.000 0.24 0.00 44.35 5.12
5989 7417 6.952358 AGGGAGTAGTACTTGTCAGTAATCAA 59.048 38.462 0.00 0.00 37.24 2.57
6094 7522 0.538584 AATGGCTCTGCACGAGATGA 59.461 50.000 14.86 0.00 42.62 2.92
6096 7524 0.967380 TGGCTCTGCACGAGATGAGA 60.967 55.000 14.86 0.00 42.62 3.27
6097 7525 0.174389 GGCTCTGCACGAGATGAGAA 59.826 55.000 14.86 0.00 42.62 2.87
6098 7526 1.202510 GGCTCTGCACGAGATGAGAAT 60.203 52.381 14.86 0.00 42.62 2.40
6099 7527 2.035193 GGCTCTGCACGAGATGAGAATA 59.965 50.000 14.86 0.00 42.62 1.75
6100 7528 3.491619 GGCTCTGCACGAGATGAGAATAA 60.492 47.826 14.86 0.00 42.62 1.40
6101 7529 3.735240 GCTCTGCACGAGATGAGAATAAG 59.265 47.826 14.86 0.00 42.62 1.73
6102 7530 4.736168 GCTCTGCACGAGATGAGAATAAGT 60.736 45.833 14.86 0.00 42.62 2.24
6103 7531 5.506483 GCTCTGCACGAGATGAGAATAAGTA 60.506 44.000 14.86 0.00 42.62 2.24
6104 7532 6.641169 TCTGCACGAGATGAGAATAAGTAT 57.359 37.500 0.00 0.00 0.00 2.12
6136 7624 0.984995 ACTTGCCTCTACCCCAAGTC 59.015 55.000 0.00 0.00 44.05 3.01
6146 7634 4.753186 TCTACCCCAAGTCTCTTTCTCTT 58.247 43.478 0.00 0.00 0.00 2.85
6200 7771 7.741027 AGTATTAGAGGATCAATGCAACATG 57.259 36.000 0.00 0.00 37.82 3.21
6246 7830 3.541632 AGCCTTAATATGTTCCACGTGG 58.458 45.455 29.26 29.26 0.00 4.94
6250 7834 5.183228 CCTTAATATGTTCCACGTGGTCTT 58.817 41.667 32.74 23.97 36.34 3.01
6285 7870 4.895668 ACAATGCTGATTTTTCCACCAT 57.104 36.364 0.00 0.00 0.00 3.55
6295 7880 3.546002 TTTTCCACCATTTAAGCGACG 57.454 42.857 0.00 0.00 0.00 5.12
6296 7881 2.172851 TTCCACCATTTAAGCGACGT 57.827 45.000 0.00 0.00 0.00 4.34
6348 7933 2.884012 ACTTCGAATTGCAACATGACCA 59.116 40.909 0.00 0.00 0.00 4.02
6349 7934 3.507233 ACTTCGAATTGCAACATGACCAT 59.493 39.130 0.00 0.00 0.00 3.55
6358 7944 2.093869 GCAACATGACCATGCCTGAATT 60.094 45.455 9.70 0.00 42.39 2.17
6372 7958 5.804639 TGCCTGAATTACAACTATGAGTGT 58.195 37.500 0.00 0.00 0.00 3.55
6424 8010 0.883833 GAGTTTGTGACATGCAGGGG 59.116 55.000 2.31 0.00 0.00 4.79
6427 8013 2.653458 TTTGTGACATGCAGGGGCCA 62.653 55.000 4.39 0.00 40.13 5.36
6505 8091 1.463531 TCCCCTCGTATATCCCTCCA 58.536 55.000 0.00 0.00 0.00 3.86
6507 8093 1.619977 CCCCTCGTATATCCCTCCAGG 60.620 61.905 0.00 0.00 0.00 4.45
6549 8135 6.017440 TCGTAAATGGAAAGCAATATACCTGC 60.017 38.462 1.16 1.16 40.24 4.85
6605 8192 6.078202 TCGATAAAGAATTGGTGCAACAAA 57.922 33.333 23.14 3.63 39.98 2.83
6620 8207 6.586844 GGTGCAACAAACTTGTAGTAAAACAA 59.413 34.615 0.00 0.00 41.31 2.83
6621 8208 7.116519 GGTGCAACAAACTTGTAGTAAAACAAA 59.883 33.333 0.00 0.00 41.31 2.83
6724 8314 2.749076 TGTGTTCTAGCATCAATGGTGC 59.251 45.455 11.06 11.06 42.81 5.01
6740 8330 1.158466 TGCAGAGGAGAAGGGACCA 59.842 57.895 0.00 0.00 0.00 4.02
6745 8335 0.391793 GAGGAGAAGGGACCAAAGCG 60.392 60.000 0.00 0.00 0.00 4.68
6755 8345 1.468914 GGACCAAAGCGATTCTGTTCC 59.531 52.381 0.00 0.00 0.00 3.62
6756 8346 1.468914 GACCAAAGCGATTCTGTTCCC 59.531 52.381 0.00 0.00 0.00 3.97
6759 8349 2.154462 CAAAGCGATTCTGTTCCCAGT 58.846 47.619 0.00 0.00 39.82 4.00
6779 8370 6.599244 CCCAGTGACATCAACATAGTAACAAT 59.401 38.462 0.00 0.00 0.00 2.71
6817 8409 2.568623 AGTTGGACTAGGGCTGTTTG 57.431 50.000 0.00 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.043243 ACAAAGACTCCAAGGAGATCTACAAA 59.957 38.462 22.34 0.00 44.53 2.83
1 2 5.544176 ACAAAGACTCCAAGGAGATCTACAA 59.456 40.000 22.34 0.00 44.53 2.41
2 3 5.087323 ACAAAGACTCCAAGGAGATCTACA 58.913 41.667 22.34 0.00 44.53 2.74
3 4 5.669164 ACAAAGACTCCAAGGAGATCTAC 57.331 43.478 22.34 0.00 44.53 2.59
4 5 5.105716 CGAACAAAGACTCCAAGGAGATCTA 60.106 44.000 22.34 0.00 44.53 1.98
5 6 4.322349 CGAACAAAGACTCCAAGGAGATCT 60.322 45.833 22.34 16.55 44.53 2.75
6 7 3.929610 CGAACAAAGACTCCAAGGAGATC 59.070 47.826 22.34 14.79 44.53 2.75
7 8 3.325135 ACGAACAAAGACTCCAAGGAGAT 59.675 43.478 22.34 7.83 44.53 2.75
8 9 2.698797 ACGAACAAAGACTCCAAGGAGA 59.301 45.455 22.34 0.00 44.53 3.71
9 10 3.060602 GACGAACAAAGACTCCAAGGAG 58.939 50.000 14.44 14.44 46.91 3.69
10 11 2.698797 AGACGAACAAAGACTCCAAGGA 59.301 45.455 0.00 0.00 0.00 3.36
11 12 3.113260 AGACGAACAAAGACTCCAAGG 57.887 47.619 0.00 0.00 0.00 3.61
12 13 4.372656 AGAAGACGAACAAAGACTCCAAG 58.627 43.478 0.00 0.00 0.00 3.61
13 14 4.369182 GAGAAGACGAACAAAGACTCCAA 58.631 43.478 0.00 0.00 0.00 3.53
14 15 3.243771 GGAGAAGACGAACAAAGACTCCA 60.244 47.826 0.00 0.00 41.28 3.86
15 16 3.006003 AGGAGAAGACGAACAAAGACTCC 59.994 47.826 0.00 0.00 41.74 3.85
16 17 4.245845 AGGAGAAGACGAACAAAGACTC 57.754 45.455 0.00 0.00 0.00 3.36
17 18 4.674281 AAGGAGAAGACGAACAAAGACT 57.326 40.909 0.00 0.00 0.00 3.24
18 19 4.809426 TGAAAGGAGAAGACGAACAAAGAC 59.191 41.667 0.00 0.00 0.00 3.01
19 20 5.018539 TGAAAGGAGAAGACGAACAAAGA 57.981 39.130 0.00 0.00 0.00 2.52
20 21 5.734855 TTGAAAGGAGAAGACGAACAAAG 57.265 39.130 0.00 0.00 0.00 2.77
21 22 6.055588 AGATTGAAAGGAGAAGACGAACAAA 58.944 36.000 0.00 0.00 0.00 2.83
22 23 5.611374 AGATTGAAAGGAGAAGACGAACAA 58.389 37.500 0.00 0.00 0.00 2.83
23 24 5.215252 AGATTGAAAGGAGAAGACGAACA 57.785 39.130 0.00 0.00 0.00 3.18
24 25 6.089685 GTGTAGATTGAAAGGAGAAGACGAAC 59.910 42.308 0.00 0.00 0.00 3.95
25 26 6.015350 AGTGTAGATTGAAAGGAGAAGACGAA 60.015 38.462 0.00 0.00 0.00 3.85
26 27 5.477291 AGTGTAGATTGAAAGGAGAAGACGA 59.523 40.000 0.00 0.00 0.00 4.20
27 28 5.715070 AGTGTAGATTGAAAGGAGAAGACG 58.285 41.667 0.00 0.00 0.00 4.18
28 29 7.382898 AGAAGTGTAGATTGAAAGGAGAAGAC 58.617 38.462 0.00 0.00 0.00 3.01
29 30 7.453126 AGAGAAGTGTAGATTGAAAGGAGAAGA 59.547 37.037 0.00 0.00 0.00 2.87
30 31 7.610865 AGAGAAGTGTAGATTGAAAGGAGAAG 58.389 38.462 0.00 0.00 0.00 2.85
31 32 7.546250 AGAGAAGTGTAGATTGAAAGGAGAA 57.454 36.000 0.00 0.00 0.00 2.87
32 33 7.233553 TGAAGAGAAGTGTAGATTGAAAGGAGA 59.766 37.037 0.00 0.00 0.00 3.71
33 34 7.382110 TGAAGAGAAGTGTAGATTGAAAGGAG 58.618 38.462 0.00 0.00 0.00 3.69
40 41 4.574013 GCCCATGAAGAGAAGTGTAGATTG 59.426 45.833 0.00 0.00 0.00 2.67
44 45 2.166459 TCGCCCATGAAGAGAAGTGTAG 59.834 50.000 0.00 0.00 0.00 2.74
46 47 0.976641 TCGCCCATGAAGAGAAGTGT 59.023 50.000 0.00 0.00 0.00 3.55
66 67 1.417890 ACCTACACAAGAGCAACAGCT 59.582 47.619 0.00 0.00 42.41 4.24
67 68 1.801178 GACCTACACAAGAGCAACAGC 59.199 52.381 0.00 0.00 0.00 4.40
71 73 0.320374 CGGGACCTACACAAGAGCAA 59.680 55.000 0.00 0.00 0.00 3.91
92 94 4.003788 CCGTCGTGTTGAGGCCCT 62.004 66.667 0.00 0.00 0.00 5.19
99 101 1.063469 AGTTGAAAAGCCGTCGTGTTG 59.937 47.619 0.00 0.00 0.00 3.33
122 124 5.011533 AGCATGGCCAAACTTGTTGTAATAA 59.988 36.000 10.96 0.00 0.00 1.40
143 145 2.066393 CCCCTCCCTCATCGAAGCA 61.066 63.158 0.00 0.00 0.00 3.91
169 171 1.457303 GTGAGCTGAATGTGTGTCGAC 59.543 52.381 9.11 9.11 0.00 4.20
170 172 1.341209 AGTGAGCTGAATGTGTGTCGA 59.659 47.619 0.00 0.00 0.00 4.20
192 194 2.476873 AGCGACGACTATAAGCACTG 57.523 50.000 0.00 0.00 0.00 3.66
212 214 0.402504 TCCATGCCCGTAAACAACCT 59.597 50.000 0.00 0.00 0.00 3.50
265 269 5.662674 TTGATTTGTTCATCATGCCATGA 57.337 34.783 10.29 10.29 44.55 3.07
355 360 6.023435 CGTGCATTGCATGTATATATTCACC 58.977 40.000 20.40 0.09 41.91 4.02
371 378 8.894409 TTTTCTTCTAATATCAACGTGCATTG 57.106 30.769 0.00 0.00 0.00 2.82
477 491 7.919690 TGACCTATATTTCTTCAATTTCAGCG 58.080 34.615 0.00 0.00 0.00 5.18
509 557 3.263602 TCTCGGCGATAAACTATGTCG 57.736 47.619 11.27 0.00 44.54 4.35
522 570 5.223382 AGACATATCTAACAAATCTCGGCG 58.777 41.667 0.00 0.00 31.46 6.46
609 671 9.847224 TGATTAGGATCTTTCCCTTGTATTTAC 57.153 33.333 0.00 0.00 43.76 2.01
777 841 4.825679 GGGGAGGGGAGGTGAGGG 62.826 77.778 0.00 0.00 0.00 4.30
778 842 3.700350 AGGGGAGGGGAGGTGAGG 61.700 72.222 0.00 0.00 0.00 3.86
779 843 2.041405 GAGGGGAGGGGAGGTGAG 60.041 72.222 0.00 0.00 0.00 3.51
780 844 3.695825 GGAGGGGAGGGGAGGTGA 61.696 72.222 0.00 0.00 0.00 4.02
1094 1165 3.088941 TAGGCCACCCATTCGAGCG 62.089 63.158 5.01 0.00 0.00 5.03
1329 1408 2.823154 TGAGGGCGGAATTCGAAATTTT 59.177 40.909 0.00 0.00 42.43 1.82
1618 1697 0.679002 GATGGGCTTTGAGCTGCTCA 60.679 55.000 27.35 27.35 44.30 4.26
1758 1837 9.442047 AATACTTGTCACCAAAATGAACAAAAA 57.558 25.926 0.00 0.00 0.00 1.94
1759 1838 9.442047 AAATACTTGTCACCAAAATGAACAAAA 57.558 25.926 0.00 0.00 0.00 2.44
1760 1839 9.442047 AAAATACTTGTCACCAAAATGAACAAA 57.558 25.926 0.00 0.00 0.00 2.83
1761 1840 9.092876 GAAAATACTTGTCACCAAAATGAACAA 57.907 29.630 0.00 0.00 0.00 2.83
1762 1841 7.433719 CGAAAATACTTGTCACCAAAATGAACA 59.566 33.333 0.00 0.00 0.00 3.18
1763 1842 7.096230 CCGAAAATACTTGTCACCAAAATGAAC 60.096 37.037 0.00 0.00 0.00 3.18
1764 1843 6.920758 CCGAAAATACTTGTCACCAAAATGAA 59.079 34.615 0.00 0.00 0.00 2.57
1765 1844 6.263392 TCCGAAAATACTTGTCACCAAAATGA 59.737 34.615 0.00 0.00 0.00 2.57
1766 1845 6.362283 GTCCGAAAATACTTGTCACCAAAATG 59.638 38.462 0.00 0.00 0.00 2.32
1767 1846 6.443792 GTCCGAAAATACTTGTCACCAAAAT 58.556 36.000 0.00 0.00 0.00 1.82
1768 1847 5.504337 CGTCCGAAAATACTTGTCACCAAAA 60.504 40.000 0.00 0.00 0.00 2.44
1769 1848 4.024725 CGTCCGAAAATACTTGTCACCAAA 60.025 41.667 0.00 0.00 0.00 3.28
1770 1849 3.495377 CGTCCGAAAATACTTGTCACCAA 59.505 43.478 0.00 0.00 0.00 3.67
1771 1850 3.061322 CGTCCGAAAATACTTGTCACCA 58.939 45.455 0.00 0.00 0.00 4.17
1772 1851 2.414138 CCGTCCGAAAATACTTGTCACC 59.586 50.000 0.00 0.00 0.00 4.02
1773 1852 3.319755 TCCGTCCGAAAATACTTGTCAC 58.680 45.455 0.00 0.00 0.00 3.67
1774 1853 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
1775 1854 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1776 1855 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1777 1856 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1778 1857 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
1779 1858 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
1780 1859 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
1781 1860 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
1782 1861 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
1783 1862 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
1784 1863 1.856629 AATACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
1785 1864 1.856629 AAATACTCCCTCCGTCCGAA 58.143 50.000 0.00 0.00 0.00 4.30
1786 1865 1.753073 GAAAATACTCCCTCCGTCCGA 59.247 52.381 0.00 0.00 0.00 4.55
1787 1866 1.755380 AGAAAATACTCCCTCCGTCCG 59.245 52.381 0.00 0.00 0.00 4.79
1788 1867 5.163332 ACATTAGAAAATACTCCCTCCGTCC 60.163 44.000 0.00 0.00 0.00 4.79
1789 1868 5.753921 CACATTAGAAAATACTCCCTCCGTC 59.246 44.000 0.00 0.00 0.00 4.79
1790 1869 5.424252 TCACATTAGAAAATACTCCCTCCGT 59.576 40.000 0.00 0.00 0.00 4.69
1791 1870 5.914033 TCACATTAGAAAATACTCCCTCCG 58.086 41.667 0.00 0.00 0.00 4.63
1792 1871 7.509546 TCATCACATTAGAAAATACTCCCTCC 58.490 38.462 0.00 0.00 0.00 4.30
1793 1872 8.964476 TTCATCACATTAGAAAATACTCCCTC 57.036 34.615 0.00 0.00 0.00 4.30
1794 1873 9.927081 ATTTCATCACATTAGAAAATACTCCCT 57.073 29.630 0.00 0.00 35.20 4.20
1795 1874 9.956720 CATTTCATCACATTAGAAAATACTCCC 57.043 33.333 0.00 0.00 35.20 4.30
1796 1875 9.455847 GCATTTCATCACATTAGAAAATACTCC 57.544 33.333 0.00 0.00 35.20 3.85
1954 2035 8.932945 TGATCTAAGAACTATCATGTCAACAC 57.067 34.615 0.00 0.00 0.00 3.32
1976 2057 7.881751 ACTAATAGCATCATACAGCAACATGAT 59.118 33.333 0.00 2.18 41.48 2.45
2007 2088 5.823570 TGGCAAAGCACTACTAGTTTGTAAA 59.176 36.000 0.00 0.00 33.33 2.01
2024 2105 3.745458 ACGGCAACAAAAATATGGCAAAG 59.255 39.130 0.00 0.00 39.38 2.77
2044 2125 4.625311 TGCTACATGTAGATGACAACAACG 59.375 41.667 32.39 6.33 42.78 4.10
2119 2201 4.575885 TGTGTTAAGTTGGTATGGAGAGC 58.424 43.478 0.00 0.00 0.00 4.09
2135 2217 6.723298 AAAAACAAGGGATGACATGTGTTA 57.277 33.333 1.15 0.00 0.00 2.41
2141 2223 5.422012 GGTGGATAAAAACAAGGGATGACAT 59.578 40.000 0.00 0.00 0.00 3.06
2257 2340 5.066593 AGTGAAAAGAAGTGATGGAACTCC 58.933 41.667 0.00 0.00 0.00 3.85
2258 2341 5.180304 GGAGTGAAAAGAAGTGATGGAACTC 59.820 44.000 0.00 0.00 0.00 3.01
2259 2342 5.066593 GGAGTGAAAAGAAGTGATGGAACT 58.933 41.667 0.00 0.00 0.00 3.01
2304 2387 9.912634 CTATTTAACCATTGTTTGTTCACATCT 57.087 29.630 0.00 0.00 35.87 2.90
2358 2457 4.586421 TGGAAATGCTAATTTGTGGACACA 59.414 37.500 0.13 0.13 36.10 3.72
2359 2458 5.132897 TGGAAATGCTAATTTGTGGACAC 57.867 39.130 0.00 0.00 36.10 3.67
2360 2459 5.999205 ATGGAAATGCTAATTTGTGGACA 57.001 34.783 0.00 0.00 36.10 4.02
2361 2460 6.633856 AGAATGGAAATGCTAATTTGTGGAC 58.366 36.000 0.00 0.00 36.10 4.02
2362 2461 6.664816 AGAGAATGGAAATGCTAATTTGTGGA 59.335 34.615 0.00 0.00 36.10 4.02
2363 2462 6.870769 AGAGAATGGAAATGCTAATTTGTGG 58.129 36.000 0.00 0.00 36.10 4.17
2443 2702 5.865552 CAGCAGGTTGAAAAATATGGTTCAG 59.134 40.000 2.57 0.00 35.29 3.02
2465 2724 7.773864 TGCCAAACATTAAATCATTATGCAG 57.226 32.000 0.00 0.00 0.00 4.41
2491 2750 4.098894 AGAAATCAGTGGGAATTGGCAAT 58.901 39.130 6.96 6.96 0.00 3.56
2503 2762 5.464168 CCTGCTGGTAAAAAGAAATCAGTG 58.536 41.667 0.51 0.00 0.00 3.66
2631 2890 6.619801 AGACAACAACAGTACAGGAATTTC 57.380 37.500 0.00 0.00 0.00 2.17
2706 2965 1.883275 TCACCGGTTTTTATGTGCTGG 59.117 47.619 2.97 0.00 0.00 4.85
2758 3017 3.989787 GTGCCCTGCAAAACCCCG 61.990 66.667 0.00 0.00 41.47 5.73
2876 3135 5.402867 CCAACAAATAAAATAACGGTTGCGT 59.597 36.000 3.07 0.00 34.41 5.24
2916 3175 5.181748 CCATGAAGTCAGAGAAACCCTAAG 58.818 45.833 0.00 0.00 0.00 2.18
2918 3177 4.168101 ACCATGAAGTCAGAGAAACCCTA 58.832 43.478 0.00 0.00 0.00 3.53
2919 3178 2.982488 ACCATGAAGTCAGAGAAACCCT 59.018 45.455 0.00 0.00 0.00 4.34
2921 3180 4.137543 ACAACCATGAAGTCAGAGAAACC 58.862 43.478 0.00 0.00 0.00 3.27
2922 3181 5.757850 AACAACCATGAAGTCAGAGAAAC 57.242 39.130 0.00 0.00 0.00 2.78
2923 3182 6.826231 TGTAAACAACCATGAAGTCAGAGAAA 59.174 34.615 0.00 0.00 0.00 2.52
2924 3183 6.353323 TGTAAACAACCATGAAGTCAGAGAA 58.647 36.000 0.00 0.00 0.00 2.87
3161 4336 3.200165 ACCTAGTTGGGCAAGGATAGAAC 59.800 47.826 0.00 0.00 41.11 3.01
3163 4338 3.130734 ACCTAGTTGGGCAAGGATAGA 57.869 47.619 0.00 0.00 41.11 1.98
3202 4377 9.689501 ACTCGGAGATTAAAAATGGGTAAAATA 57.310 29.630 12.86 0.00 33.89 1.40
3272 4447 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3273 4448 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3274 4449 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3275 4450 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3276 4451 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3277 4452 2.094390 TCTGACAAGTATTTCCGGACGG 60.094 50.000 1.83 3.96 0.00 4.79
3278 4453 3.226346 TCTGACAAGTATTTCCGGACG 57.774 47.619 1.83 0.00 0.00 4.79
3279 4454 5.934935 TTTTCTGACAAGTATTTCCGGAC 57.065 39.130 1.83 0.00 0.00 4.79
3280 4455 6.569610 GCATTTTTCTGACAAGTATTTCCGGA 60.570 38.462 0.00 0.00 0.00 5.14
3281 4456 5.572896 GCATTTTTCTGACAAGTATTTCCGG 59.427 40.000 0.00 0.00 0.00 5.14
3282 4457 6.148948 TGCATTTTTCTGACAAGTATTTCCG 58.851 36.000 0.00 0.00 0.00 4.30
3283 4458 9.638239 TTATGCATTTTTCTGACAAGTATTTCC 57.362 29.630 3.54 0.00 0.00 3.13
3289 4464 8.776470 CCATTTTTATGCATTTTTCTGACAAGT 58.224 29.630 3.54 0.00 0.00 3.16
3290 4465 8.991026 TCCATTTTTATGCATTTTTCTGACAAG 58.009 29.630 3.54 0.00 0.00 3.16
3291 4466 8.899427 TCCATTTTTATGCATTTTTCTGACAA 57.101 26.923 3.54 0.00 0.00 3.18
3292 4467 8.937884 CATCCATTTTTATGCATTTTTCTGACA 58.062 29.630 3.54 0.00 0.00 3.58
3293 4468 8.938906 ACATCCATTTTTATGCATTTTTCTGAC 58.061 29.630 3.54 0.00 0.00 3.51
3303 4478 9.851686 AGTTCTAGATACATCCATTTTTATGCA 57.148 29.630 0.00 0.00 0.00 3.96
3321 4496 9.117183 TGCATCTAGACGTATTTTAGTTCTAGA 57.883 33.333 8.64 8.64 38.94 2.43
3322 4497 9.900710 ATGCATCTAGACGTATTTTAGTTCTAG 57.099 33.333 0.00 0.00 0.00 2.43
3323 4498 9.894783 GATGCATCTAGACGTATTTTAGTTCTA 57.105 33.333 19.70 0.00 0.00 2.10
3324 4499 7.868415 GGATGCATCTAGACGTATTTTAGTTCT 59.132 37.037 25.28 0.00 0.00 3.01
3325 4500 7.652105 TGGATGCATCTAGACGTATTTTAGTTC 59.348 37.037 25.28 3.59 0.00 3.01
3326 4501 7.497595 TGGATGCATCTAGACGTATTTTAGTT 58.502 34.615 25.28 0.00 0.00 2.24
3327 4502 7.050970 TGGATGCATCTAGACGTATTTTAGT 57.949 36.000 25.28 0.00 0.00 2.24
3328 4503 8.539770 AATGGATGCATCTAGACGTATTTTAG 57.460 34.615 25.28 0.00 0.00 1.85
3329 4504 7.602644 GGAATGGATGCATCTAGACGTATTTTA 59.397 37.037 25.28 0.00 0.00 1.52
3330 4505 6.428159 GGAATGGATGCATCTAGACGTATTTT 59.572 38.462 25.28 8.65 0.00 1.82
3331 4506 5.934625 GGAATGGATGCATCTAGACGTATTT 59.065 40.000 25.28 9.37 0.00 1.40
3332 4507 5.247110 AGGAATGGATGCATCTAGACGTATT 59.753 40.000 25.28 10.09 0.00 1.89
3333 4508 4.774726 AGGAATGGATGCATCTAGACGTAT 59.225 41.667 25.28 1.05 0.00 3.06
3334 4509 4.152647 AGGAATGGATGCATCTAGACGTA 58.847 43.478 25.28 5.08 0.00 3.57
3335 4510 2.968574 AGGAATGGATGCATCTAGACGT 59.031 45.455 25.28 15.38 0.00 4.34
3336 4511 3.674528 AGGAATGGATGCATCTAGACG 57.325 47.619 25.28 0.00 0.00 4.18
3337 4512 4.218635 TCGTAGGAATGGATGCATCTAGAC 59.781 45.833 25.28 16.46 0.00 2.59
3338 4513 4.218635 GTCGTAGGAATGGATGCATCTAGA 59.781 45.833 25.28 9.00 0.00 2.43
3339 4514 4.021981 TGTCGTAGGAATGGATGCATCTAG 60.022 45.833 25.28 6.75 0.00 2.43
3340 4515 3.895041 TGTCGTAGGAATGGATGCATCTA 59.105 43.478 25.28 20.79 0.00 1.98
3341 4516 2.700371 TGTCGTAGGAATGGATGCATCT 59.300 45.455 25.28 6.65 0.00 2.90
3342 4517 3.111853 TGTCGTAGGAATGGATGCATC 57.888 47.619 18.81 18.81 0.00 3.91
3343 4518 3.118261 ACTTGTCGTAGGAATGGATGCAT 60.118 43.478 0.00 0.00 0.00 3.96
3344 4519 2.236146 ACTTGTCGTAGGAATGGATGCA 59.764 45.455 0.00 0.00 0.00 3.96
3345 4520 2.906354 ACTTGTCGTAGGAATGGATGC 58.094 47.619 0.00 0.00 0.00 3.91
3346 4521 6.202954 GGAAATACTTGTCGTAGGAATGGATG 59.797 42.308 0.00 0.00 0.00 3.51
3347 4522 6.289064 GGAAATACTTGTCGTAGGAATGGAT 58.711 40.000 0.00 0.00 0.00 3.41
3348 4523 5.667466 GGAAATACTTGTCGTAGGAATGGA 58.333 41.667 0.00 0.00 0.00 3.41
3349 4524 4.506654 CGGAAATACTTGTCGTAGGAATGG 59.493 45.833 0.00 0.00 0.00 3.16
3350 4525 4.506654 CCGGAAATACTTGTCGTAGGAATG 59.493 45.833 0.00 0.00 0.00 2.67
3351 4526 4.403432 TCCGGAAATACTTGTCGTAGGAAT 59.597 41.667 0.00 0.00 0.00 3.01
3352 4527 3.763360 TCCGGAAATACTTGTCGTAGGAA 59.237 43.478 0.00 0.00 0.00 3.36
3353 4528 3.129287 GTCCGGAAATACTTGTCGTAGGA 59.871 47.826 5.23 0.00 0.00 2.94
3354 4529 3.442100 GTCCGGAAATACTTGTCGTAGG 58.558 50.000 5.23 0.00 0.00 3.18
3355 4530 3.103738 CGTCCGGAAATACTTGTCGTAG 58.896 50.000 5.23 0.00 0.00 3.51
3356 4531 2.159393 CCGTCCGGAAATACTTGTCGTA 60.159 50.000 5.23 0.00 37.50 3.43
3357 4532 1.403249 CCGTCCGGAAATACTTGTCGT 60.403 52.381 5.23 0.00 37.50 4.34
3358 4533 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
3359 4534 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3360 4535 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3361 4536 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3362 4537 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3363 4538 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3364 4539 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3365 4540 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3366 4541 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3367 4542 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3368 4543 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3369 4544 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
3370 4545 1.041447 AATGTACTCCCTCCGTCCGG 61.041 60.000 0.00 0.00 0.00 5.14
3371 4546 0.384669 GAATGTACTCCCTCCGTCCG 59.615 60.000 0.00 0.00 0.00 4.79
3372 4547 1.136500 GTGAATGTACTCCCTCCGTCC 59.864 57.143 0.00 0.00 0.00 4.79
3373 4548 1.822990 TGTGAATGTACTCCCTCCGTC 59.177 52.381 0.00 0.00 0.00 4.79
3374 4549 1.933021 TGTGAATGTACTCCCTCCGT 58.067 50.000 0.00 0.00 0.00 4.69
3375 4550 2.418746 CCTTGTGAATGTACTCCCTCCG 60.419 54.545 0.00 0.00 0.00 4.63
3376 4551 2.572104 ACCTTGTGAATGTACTCCCTCC 59.428 50.000 0.00 0.00 0.00 4.30
3377 4552 3.600388 CACCTTGTGAATGTACTCCCTC 58.400 50.000 0.00 0.00 35.23 4.30
3378 4553 2.290323 GCACCTTGTGAATGTACTCCCT 60.290 50.000 0.00 0.00 35.23 4.20
3379 4554 2.084546 GCACCTTGTGAATGTACTCCC 58.915 52.381 0.00 0.00 35.23 4.30
3380 4555 3.059352 AGCACCTTGTGAATGTACTCC 57.941 47.619 0.00 0.00 35.23 3.85
3381 4556 4.184629 CCTAGCACCTTGTGAATGTACTC 58.815 47.826 0.00 0.00 35.23 2.59
3382 4557 3.619979 GCCTAGCACCTTGTGAATGTACT 60.620 47.826 0.00 0.00 35.23 2.73
3383 4558 2.678336 GCCTAGCACCTTGTGAATGTAC 59.322 50.000 0.00 0.00 35.23 2.90
3384 4559 2.304470 TGCCTAGCACCTTGTGAATGTA 59.696 45.455 0.00 0.00 35.23 2.29
3385 4560 1.073763 TGCCTAGCACCTTGTGAATGT 59.926 47.619 0.00 0.00 35.23 2.71
3386 4561 1.825090 TGCCTAGCACCTTGTGAATG 58.175 50.000 0.00 0.00 35.23 2.67
3407 4582 1.093159 GCTGGTCTGCTTCCTGATTG 58.907 55.000 0.00 0.00 0.00 2.67
3426 4601 1.068250 GCCTAAGCAGGACTAGGCG 59.932 63.158 4.47 0.00 45.91 5.52
3474 4650 3.072211 CTGCATAGGTGGCATCTACATG 58.928 50.000 10.19 7.90 41.06 3.21
3478 4654 2.682594 AGTCTGCATAGGTGGCATCTA 58.317 47.619 10.42 10.42 41.06 1.98
3481 4657 2.039480 CCATAGTCTGCATAGGTGGCAT 59.961 50.000 0.00 0.00 41.06 4.40
3482 4658 1.417517 CCATAGTCTGCATAGGTGGCA 59.582 52.381 0.00 0.00 39.32 4.92
3484 4660 1.696336 AGCCATAGTCTGCATAGGTGG 59.304 52.381 0.00 0.00 0.00 4.61
3485 4661 3.056250 CCTAGCCATAGTCTGCATAGGTG 60.056 52.174 0.00 0.00 0.00 4.00
3486 4662 3.169099 CCTAGCCATAGTCTGCATAGGT 58.831 50.000 0.00 0.00 0.00 3.08
3487 4663 2.093764 GCCTAGCCATAGTCTGCATAGG 60.094 54.545 0.00 0.00 34.37 2.57
3488 4664 2.564504 TGCCTAGCCATAGTCTGCATAG 59.435 50.000 0.00 0.00 0.00 2.23
3490 4666 1.347050 CTGCCTAGCCATAGTCTGCAT 59.653 52.381 0.00 0.00 0.00 3.96
3491 4667 0.755079 CTGCCTAGCCATAGTCTGCA 59.245 55.000 0.00 0.00 0.00 4.41
3493 4669 3.603144 GCTGCCTAGCCATAGTCTG 57.397 57.895 0.00 0.00 44.33 3.51
3547 4903 2.679837 GCGGAAGTGATGTGACATCAAT 59.320 45.455 27.88 24.55 0.00 2.57
4051 5407 5.705400 TCTGGAGGGAACAAGAAAAGAAAT 58.295 37.500 0.00 0.00 0.00 2.17
4227 5584 8.633561 GGGCAAAGTAAAATAGATCAGCTTAAT 58.366 33.333 0.00 0.00 0.00 1.40
4228 5585 7.201696 CGGGCAAAGTAAAATAGATCAGCTTAA 60.202 37.037 0.00 0.00 0.00 1.85
4280 5637 0.462225 TCTAGCTCACTCCGGTCTCG 60.462 60.000 0.00 0.00 0.00 4.04
4291 5648 2.363680 GCCATTACTCTGCTCTAGCTCA 59.636 50.000 3.26 0.00 42.66 4.26
4327 5684 1.678728 CCATTGGAGAGGCAAGCGTTA 60.679 52.381 0.00 0.00 0.00 3.18
4399 5756 0.391130 CTTGATTTCCCGAGCCACGA 60.391 55.000 2.48 0.00 45.77 4.35
4426 5783 0.687354 ATCGCAAGGGAGACACAACT 59.313 50.000 0.00 0.00 38.47 3.16
4492 5849 1.750780 TGGTTGCTGCCAAACACGA 60.751 52.632 0.00 0.00 43.42 4.35
4571 5934 2.349167 CCTGATATGGGAGGGGATGA 57.651 55.000 0.00 0.00 0.00 2.92
4614 5977 2.033602 TCCGTGAGCTCCGACTGA 59.966 61.111 21.43 9.56 0.00 3.41
4693 6056 2.037136 CCCCTGCTCTGTTGAAGCG 61.037 63.158 0.00 0.00 0.00 4.68
5008 6371 0.884704 CCCGGTCCATTCCTAATGCG 60.885 60.000 0.00 0.00 37.57 4.73
5056 6419 0.669077 CTCCTTGACGATACTCCCCG 59.331 60.000 0.00 0.00 0.00 5.73
5065 6428 4.471904 AGCATTGATAACTCCTTGACGA 57.528 40.909 0.00 0.00 0.00 4.20
5104 6467 2.409752 CGACAGACCAAATTGTTCGACG 60.410 50.000 0.00 0.00 0.00 5.12
5146 6509 0.831307 GAGGATCCGGCAGTAACCTT 59.169 55.000 5.98 0.00 0.00 3.50
5152 6515 0.678048 GCTTTTGAGGATCCGGCAGT 60.678 55.000 5.98 0.00 0.00 4.40
5158 6521 3.277715 CTCCTTCTGCTTTTGAGGATCC 58.722 50.000 2.48 2.48 0.00 3.36
5260 6623 1.476488 CCCTTATTTTTCCGGGTGCAG 59.524 52.381 0.00 0.00 31.89 4.41
5261 6624 1.551452 CCCTTATTTTTCCGGGTGCA 58.449 50.000 0.00 0.00 31.89 4.57
5320 6683 0.107945 CAGCACTCAGGAGCTTACCC 60.108 60.000 0.00 0.00 37.28 3.69
5322 6685 0.742635 GGCAGCACTCAGGAGCTTAC 60.743 60.000 0.00 0.00 37.28 2.34
5499 6862 1.737793 GGCAACTCATCCTGTAAACCG 59.262 52.381 0.00 0.00 0.00 4.44
5507 6872 0.617413 CTCAGGTGGCAACTCATCCT 59.383 55.000 0.00 0.00 37.61 3.24
5513 6878 2.282040 GCAGCTCAGGTGGCAACT 60.282 61.111 5.89 0.00 37.61 3.16
5514 6879 2.282040 AGCAGCTCAGGTGGCAAC 60.282 61.111 5.89 0.00 0.00 4.17
5541 6906 0.106419 ACAAAGCAGGGGAAAACGGA 60.106 50.000 0.00 0.00 0.00 4.69
5544 6909 2.031870 AGACACAAAGCAGGGGAAAAC 58.968 47.619 0.00 0.00 0.00 2.43
5549 6914 2.270986 GCCAGACACAAAGCAGGGG 61.271 63.158 0.00 0.00 0.00 4.79
5553 6918 1.134753 CAACAAGCCAGACACAAAGCA 59.865 47.619 0.00 0.00 0.00 3.91
5555 6920 2.033801 CCTCAACAAGCCAGACACAAAG 59.966 50.000 0.00 0.00 0.00 2.77
5558 6923 0.819259 GCCTCAACAAGCCAGACACA 60.819 55.000 0.00 0.00 0.00 3.72
5567 6932 2.031682 CCTTTTCAGTCGCCTCAACAAG 60.032 50.000 0.00 0.00 0.00 3.16
5577 6942 1.291877 CTCCACGGCCTTTTCAGTCG 61.292 60.000 0.00 0.00 0.00 4.18
5582 6947 1.534729 AATCACTCCACGGCCTTTTC 58.465 50.000 0.00 0.00 0.00 2.29
5584 6949 3.366052 AATAATCACTCCACGGCCTTT 57.634 42.857 0.00 0.00 0.00 3.11
5598 6963 6.612306 AGAAACAGAAGCGAACCAAATAATC 58.388 36.000 0.00 0.00 0.00 1.75
5635 7000 7.197017 ACACAATTACGCAAACTCAACATAAA 58.803 30.769 0.00 0.00 0.00 1.40
5642 7007 2.867368 ACGACACAATTACGCAAACTCA 59.133 40.909 0.00 0.00 0.00 3.41
5688 7055 8.262601 TGATAGTTACCATCCACATAGTTCAT 57.737 34.615 0.00 0.00 0.00 2.57
5691 7058 7.499232 GCTTTGATAGTTACCATCCACATAGTT 59.501 37.037 0.00 0.00 0.00 2.24
5729 7096 3.964031 ACTAATCCTGACAGAGACATCCC 59.036 47.826 3.32 0.00 0.00 3.85
5803 7203 7.468494 CGCACTGATGGATTTGGATATGTAAAA 60.468 37.037 0.00 0.00 0.00 1.52
5874 7302 4.779993 AATTTGGATCTGAGGGAGTACC 57.220 45.455 0.00 0.00 40.67 3.34
5875 7303 7.993183 TCAATTAATTTGGATCTGAGGGAGTAC 59.007 37.037 0.00 0.00 35.92 2.73
5876 7304 7.993183 GTCAATTAATTTGGATCTGAGGGAGTA 59.007 37.037 0.00 0.00 35.92 2.59
5877 7305 6.830838 GTCAATTAATTTGGATCTGAGGGAGT 59.169 38.462 0.00 0.00 35.92 3.85
5878 7306 6.017605 CGTCAATTAATTTGGATCTGAGGGAG 60.018 42.308 0.00 0.00 35.92 4.30
5879 7307 5.822519 CGTCAATTAATTTGGATCTGAGGGA 59.177 40.000 0.00 0.00 35.92 4.20
5885 7313 5.440610 AGCTCCGTCAATTAATTTGGATCT 58.559 37.500 11.89 10.75 35.92 2.75
5917 7345 6.563222 TTTGGTACACCATTAGTACAAAGC 57.437 37.500 1.05 0.00 46.97 3.51
5944 7372 8.395633 ACTCCCTTTAATTCAAATTAATCGACG 58.604 33.333 8.35 0.00 39.73 5.12
5978 7406 6.758593 TGTTCGTTACTGTTGATTACTGAC 57.241 37.500 0.00 0.00 0.00 3.51
5989 7417 4.318546 GCGTCTTGAATTGTTCGTTACTGT 60.319 41.667 0.00 0.00 0.00 3.55
6079 7507 2.222007 ATTCTCATCTCGTGCAGAGC 57.778 50.000 7.94 0.00 46.44 4.09
6083 7511 9.411801 GATTTATACTTATTCTCATCTCGTGCA 57.588 33.333 0.00 0.00 0.00 4.57
6099 7527 9.717942 GAGGCAAGTCATAGATGATTTATACTT 57.282 33.333 0.51 0.00 39.30 2.24
6100 7528 9.099071 AGAGGCAAGTCATAGATGATTTATACT 57.901 33.333 0.51 0.64 39.30 2.12
6103 7531 8.317679 GGTAGAGGCAAGTCATAGATGATTTAT 58.682 37.037 0.51 0.00 39.30 1.40
6104 7532 7.256332 GGGTAGAGGCAAGTCATAGATGATTTA 60.256 40.741 0.51 0.00 39.30 1.40
6231 7815 4.280436 TCAAGACCACGTGGAACATATT 57.720 40.909 40.21 18.72 44.52 1.28
6236 7820 0.586802 GCTTCAAGACCACGTGGAAC 59.413 55.000 40.21 29.59 38.94 3.62
6246 7830 4.742438 TTGTATTTCACCGCTTCAAGAC 57.258 40.909 0.00 0.00 0.00 3.01
6250 7834 3.081061 AGCATTGTATTTCACCGCTTCA 58.919 40.909 0.00 0.00 32.11 3.02
6295 7880 4.828296 TCTCTCCGGGGGCGGTAC 62.828 72.222 0.00 0.00 0.00 3.34
6296 7881 2.010412 TAATCTCTCCGGGGGCGGTA 62.010 60.000 0.00 0.00 0.00 4.02
6326 7911 3.317711 TGGTCATGTTGCAATTCGAAGTT 59.682 39.130 0.59 0.00 0.00 2.66
6327 7912 2.884012 TGGTCATGTTGCAATTCGAAGT 59.116 40.909 0.59 0.00 0.00 3.01
6348 7933 6.418101 ACACTCATAGTTGTAATTCAGGCAT 58.582 36.000 0.00 0.00 0.00 4.40
6349 7934 5.804639 ACACTCATAGTTGTAATTCAGGCA 58.195 37.500 0.00 0.00 0.00 4.75
6358 7944 5.046663 TCAGGCATCAACACTCATAGTTGTA 60.047 40.000 6.03 0.00 44.97 2.41
6372 7958 2.191400 AGCTCCTAGTTCAGGCATCAA 58.809 47.619 0.00 0.00 45.10 2.57
6513 8099 7.068103 TGCTTTCCATTTACGATCCAATTACAT 59.932 33.333 0.00 0.00 0.00 2.29
6549 8135 1.873591 CTCAAAACCGGTCCACAGAAG 59.126 52.381 8.04 0.00 0.00 2.85
6590 8177 5.348164 ACTACAAGTTTGTTGCACCAATTC 58.652 37.500 0.00 0.00 42.35 2.17
6592 8179 6.458232 TTACTACAAGTTTGTTGCACCAAT 57.542 33.333 0.00 0.00 42.35 3.16
6605 8192 9.145865 CCACAACATTTTTGTTTTACTACAAGT 57.854 29.630 0.00 0.00 39.06 3.16
6636 8223 4.144297 CCAGGAAGAACAAAGTGAATGGA 58.856 43.478 0.00 0.00 0.00 3.41
6715 8305 1.280133 CCTTCTCCTCTGCACCATTGA 59.720 52.381 0.00 0.00 0.00 2.57
6724 8314 1.339535 GCTTTGGTCCCTTCTCCTCTG 60.340 57.143 0.00 0.00 0.00 3.35
6755 8345 7.615582 ATTGTTACTATGTTGATGTCACTGG 57.384 36.000 0.00 0.00 0.00 4.00
6779 8370 5.844516 CCAACTAGGACTCCCCTTATTGATA 59.155 44.000 0.00 0.00 44.85 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.