Multiple sequence alignment - TraesCS3B01G201000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G201000 chr3B 100.000 4548 0 0 1 4548 230197295 230192748 0.000000e+00 8399.0
1 TraesCS3B01G201000 chr3B 96.292 3884 126 8 671 4548 266163216 266167087 0.000000e+00 6359.0
2 TraesCS3B01G201000 chr3B 89.818 3781 278 48 812 4548 278846676 278850393 0.000000e+00 4750.0
3 TraesCS3B01G201000 chr3B 87.755 147 16 2 671 816 278846496 278846641 2.180000e-38 171.0
4 TraesCS3B01G201000 chr3B 92.857 42 3 0 626 667 821826766 821826807 1.370000e-05 62.1
5 TraesCS3B01G201000 chr4B 96.730 3884 116 8 671 4548 136781100 136784978 0.000000e+00 6458.0
6 TraesCS3B01G201000 chr4B 96.503 715 23 1 3834 4548 187391198 187391910 0.000000e+00 1181.0
7 TraesCS3B01G201000 chr2D 91.605 3502 240 37 811 4286 300443989 300440516 0.000000e+00 4789.0
8 TraesCS3B01G201000 chr2D 89.612 3379 262 46 685 4019 430785145 430788478 0.000000e+00 4213.0
9 TraesCS3B01G201000 chr2D 83.764 271 27 6 671 927 300445238 300444971 1.630000e-59 241.0
10 TraesCS3B01G201000 chr2D 92.857 56 3 1 870 925 300444742 300444688 3.770000e-11 80.5
11 TraesCS3B01G201000 chr2D 94.118 51 1 2 876 926 300445085 300445037 4.880000e-10 76.8
12 TraesCS3B01G201000 chr2D 90.566 53 3 2 870 922 430785293 430785343 8.160000e-08 69.4
13 TraesCS3B01G201000 chr7B 89.737 3459 284 41 837 4271 599498822 599502233 0.000000e+00 4355.0
14 TraesCS3B01G201000 chr7B 90.042 2380 160 38 2213 4548 599502241 599504587 0.000000e+00 3011.0
15 TraesCS3B01G201000 chr7B 95.122 41 2 0 628 668 4825318 4825358 1.060000e-06 65.8
16 TraesCS3B01G201000 chr7B 95.122 41 2 0 628 668 727190166 727190126 1.060000e-06 65.8
17 TraesCS3B01G201000 chr3D 92.184 2367 151 20 2027 4377 339595917 339593569 0.000000e+00 3315.0
18 TraesCS3B01G201000 chr3D 88.520 1176 102 20 671 1833 339597886 339596731 0.000000e+00 1393.0
19 TraesCS3B01G201000 chr3D 88.406 138 11 5 662 799 526510525 526510393 1.310000e-35 161.0
20 TraesCS3B01G201000 chr3D 94.231 104 6 0 4445 4548 339593537 339593434 4.710000e-35 159.0
21 TraesCS3B01G201000 chr5B 89.942 2605 179 25 1987 4548 457602159 457604723 0.000000e+00 3282.0
22 TraesCS3B01G201000 chr5B 89.164 1172 100 18 811 1979 457589662 457590809 0.000000e+00 1435.0
23 TraesCS3B01G201000 chr5B 88.571 140 15 1 671 810 457589494 457589632 7.820000e-38 169.0
24 TraesCS3B01G201000 chr5A 95.668 1639 61 5 2812 4445 283462078 283463711 0.000000e+00 2625.0
25 TraesCS3B01G201000 chr5A 95.241 1639 67 6 2812 4445 264751331 264752963 0.000000e+00 2584.0
26 TraesCS3B01G201000 chr5A 95.052 1637 69 7 2815 4445 337712334 337710704 0.000000e+00 2564.0
27 TraesCS3B01G201000 chr5A 93.765 1652 66 11 671 2319 264749407 264751024 0.000000e+00 2446.0
28 TraesCS3B01G201000 chr5A 93.656 1655 68 11 671 2322 337714261 337712641 0.000000e+00 2440.0
29 TraesCS3B01G201000 chr5A 93.345 1653 73 9 671 2319 283460152 283461771 0.000000e+00 2409.0
30 TraesCS3B01G201000 chr7D 94.108 611 31 4 1 610 615329977 615330583 0.000000e+00 924.0
31 TraesCS3B01G201000 chr1A 93.333 45 2 1 628 672 201804094 201804137 1.060000e-06 65.8
32 TraesCS3B01G201000 chr5D 100.000 34 0 0 636 669 31092819 31092852 3.800000e-06 63.9
33 TraesCS3B01G201000 chr2A 93.023 43 1 1 626 668 562360433 562360473 1.370000e-05 62.1
34 TraesCS3B01G201000 chr6D 94.872 39 1 1 631 668 425262472 425262434 4.910000e-05 60.2
35 TraesCS3B01G201000 chr3A 94.737 38 2 0 628 665 514456546 514456509 4.910000e-05 60.2
36 TraesCS3B01G201000 chr1B 92.683 41 2 1 628 668 626106703 626106664 1.770000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G201000 chr3B 230192748 230197295 4547 True 8399.000000 8399 100.0000 1 4548 1 chr3B.!!$R1 4547
1 TraesCS3B01G201000 chr3B 266163216 266167087 3871 False 6359.000000 6359 96.2920 671 4548 1 chr3B.!!$F1 3877
2 TraesCS3B01G201000 chr3B 278846496 278850393 3897 False 2460.500000 4750 88.7865 671 4548 2 chr3B.!!$F3 3877
3 TraesCS3B01G201000 chr4B 136781100 136784978 3878 False 6458.000000 6458 96.7300 671 4548 1 chr4B.!!$F1 3877
4 TraesCS3B01G201000 chr4B 187391198 187391910 712 False 1181.000000 1181 96.5030 3834 4548 1 chr4B.!!$F2 714
5 TraesCS3B01G201000 chr2D 430785145 430788478 3333 False 2141.200000 4213 90.0890 685 4019 2 chr2D.!!$F1 3334
6 TraesCS3B01G201000 chr2D 300440516 300445238 4722 True 1296.825000 4789 90.5860 671 4286 4 chr2D.!!$R1 3615
7 TraesCS3B01G201000 chr7B 599498822 599504587 5765 False 3683.000000 4355 89.8895 837 4548 2 chr7B.!!$F2 3711
8 TraesCS3B01G201000 chr3D 339593434 339597886 4452 True 1622.333333 3315 91.6450 671 4548 3 chr3D.!!$R2 3877
9 TraesCS3B01G201000 chr5B 457602159 457604723 2564 False 3282.000000 3282 89.9420 1987 4548 1 chr5B.!!$F1 2561
10 TraesCS3B01G201000 chr5B 457589494 457590809 1315 False 802.000000 1435 88.8675 671 1979 2 chr5B.!!$F2 1308
11 TraesCS3B01G201000 chr5A 283460152 283463711 3559 False 2517.000000 2625 94.5065 671 4445 2 chr5A.!!$F2 3774
12 TraesCS3B01G201000 chr5A 264749407 264752963 3556 False 2515.000000 2584 94.5030 671 4445 2 chr5A.!!$F1 3774
13 TraesCS3B01G201000 chr5A 337710704 337714261 3557 True 2502.000000 2564 94.3540 671 4445 2 chr5A.!!$R1 3774
14 TraesCS3B01G201000 chr7D 615329977 615330583 606 False 924.000000 924 94.1080 1 610 1 chr7D.!!$F1 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.034863 TGTCGGGGGAATACAAAGGC 60.035 55.0 0.0 0.0 0.00 4.35 F
666 667 0.036294 GCACGGGCTCTTTTCCTAGT 60.036 55.0 0.0 0.0 36.96 2.57 F
1648 3343 0.322816 TGCCCAGCTCCAATCTTGAC 60.323 55.0 0.0 0.0 0.00 3.18 F
2368 4187 0.985549 GCTAGCTGAACGAACAGACG 59.014 55.0 7.7 0.0 39.94 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1149 2332 0.596577 GAAGGACGGGAAAAAGGCAC 59.403 55.000 0.00 0.0 0.00 5.01 R
2232 4049 4.406003 ACCCAGTCCATGACTATAACTGAC 59.594 45.833 0.00 0.0 41.37 3.51 R
3508 5398 1.079503 GCCAGAGCAGTTTTAGACCG 58.920 55.000 0.00 0.0 39.53 4.79 R
4319 8368 2.218603 AGTAGGTGACGCCAAAACAAG 58.781 47.619 7.99 0.0 40.61 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.547091 AATAACGCATTGCATTATATATTCGC 57.453 30.769 10.09 0.00 26.82 4.70
33 34 4.908736 ACGCATTGCATTATATATTCGCC 58.091 39.130 9.69 0.00 0.00 5.54
34 35 4.394610 ACGCATTGCATTATATATTCGCCA 59.605 37.500 9.69 0.00 0.00 5.69
35 36 5.106357 ACGCATTGCATTATATATTCGCCAA 60.106 36.000 9.69 0.00 0.00 4.52
36 37 5.453266 CGCATTGCATTATATATTCGCCAAG 59.547 40.000 9.69 0.00 0.00 3.61
37 38 6.324819 GCATTGCATTATATATTCGCCAAGT 58.675 36.000 3.15 0.00 0.00 3.16
38 39 7.471721 GCATTGCATTATATATTCGCCAAGTA 58.528 34.615 3.15 0.00 0.00 2.24
39 40 7.967854 GCATTGCATTATATATTCGCCAAGTAA 59.032 33.333 3.15 0.00 0.00 2.24
40 41 9.494479 CATTGCATTATATATTCGCCAAGTAAG 57.506 33.333 0.00 0.00 0.00 2.34
41 42 8.840833 TTGCATTATATATTCGCCAAGTAAGA 57.159 30.769 0.00 0.00 0.00 2.10
42 43 8.840833 TGCATTATATATTCGCCAAGTAAGAA 57.159 30.769 0.00 0.00 0.00 2.52
43 44 9.448438 TGCATTATATATTCGCCAAGTAAGAAT 57.552 29.630 0.00 0.00 38.12 2.40
52 53 6.870971 TCGCCAAGTAAGAATAGTTTTTGT 57.129 33.333 0.00 0.00 0.00 2.83
53 54 7.266922 TCGCCAAGTAAGAATAGTTTTTGTT 57.733 32.000 0.00 0.00 0.00 2.83
54 55 7.136119 TCGCCAAGTAAGAATAGTTTTTGTTG 58.864 34.615 0.00 0.00 0.00 3.33
55 56 6.915843 CGCCAAGTAAGAATAGTTTTTGTTGT 59.084 34.615 0.00 0.00 0.00 3.32
56 57 7.096640 CGCCAAGTAAGAATAGTTTTTGTTGTG 60.097 37.037 0.00 0.00 0.00 3.33
57 58 7.704899 GCCAAGTAAGAATAGTTTTTGTTGTGT 59.295 33.333 0.00 0.00 0.00 3.72
58 59 9.019764 CCAAGTAAGAATAGTTTTTGTTGTGTG 57.980 33.333 0.00 0.00 0.00 3.82
59 60 8.531530 CAAGTAAGAATAGTTTTTGTTGTGTGC 58.468 33.333 0.00 0.00 0.00 4.57
60 61 7.767261 AGTAAGAATAGTTTTTGTTGTGTGCA 58.233 30.769 0.00 0.00 0.00 4.57
61 62 7.915397 AGTAAGAATAGTTTTTGTTGTGTGCAG 59.085 33.333 0.00 0.00 0.00 4.41
62 63 6.207691 AGAATAGTTTTTGTTGTGTGCAGT 57.792 33.333 0.00 0.00 0.00 4.40
63 64 6.630071 AGAATAGTTTTTGTTGTGTGCAGTT 58.370 32.000 0.00 0.00 0.00 3.16
64 65 7.096551 AGAATAGTTTTTGTTGTGTGCAGTTT 58.903 30.769 0.00 0.00 0.00 2.66
65 66 7.602265 AGAATAGTTTTTGTTGTGTGCAGTTTT 59.398 29.630 0.00 0.00 0.00 2.43
66 67 7.665561 ATAGTTTTTGTTGTGTGCAGTTTTT 57.334 28.000 0.00 0.00 0.00 1.94
95 96 8.862325 TCCTTCAAGAAGCTGTTATTTTATCA 57.138 30.769 4.30 0.00 37.11 2.15
96 97 9.295825 TCCTTCAAGAAGCTGTTATTTTATCAA 57.704 29.630 4.30 0.00 37.11 2.57
151 152 7.687941 ATGACACCGAAATTGAAATAAGAGT 57.312 32.000 0.00 0.00 0.00 3.24
152 153 7.504924 TGACACCGAAATTGAAATAAGAGTT 57.495 32.000 0.00 0.00 0.00 3.01
153 154 7.936584 TGACACCGAAATTGAAATAAGAGTTT 58.063 30.769 0.00 0.00 0.00 2.66
154 155 8.410141 TGACACCGAAATTGAAATAAGAGTTTT 58.590 29.630 0.00 0.00 0.00 2.43
155 156 8.797266 ACACCGAAATTGAAATAAGAGTTTTC 57.203 30.769 0.00 0.00 34.40 2.29
156 157 8.630037 ACACCGAAATTGAAATAAGAGTTTTCT 58.370 29.630 0.00 0.00 34.80 2.52
157 158 9.118236 CACCGAAATTGAAATAAGAGTTTTCTC 57.882 33.333 0.00 0.00 46.50 2.87
171 172 6.869315 GAGTTTTCTCTCCAGCTTAACTTT 57.131 37.500 0.00 0.00 43.12 2.66
172 173 7.265647 GAGTTTTCTCTCCAGCTTAACTTTT 57.734 36.000 0.00 0.00 43.12 2.27
173 174 7.032377 AGTTTTCTCTCCAGCTTAACTTTTG 57.968 36.000 0.00 0.00 0.00 2.44
174 175 6.603599 AGTTTTCTCTCCAGCTTAACTTTTGT 59.396 34.615 0.00 0.00 0.00 2.83
175 176 6.619801 TTTCTCTCCAGCTTAACTTTTGTC 57.380 37.500 0.00 0.00 0.00 3.18
176 177 4.307432 TCTCTCCAGCTTAACTTTTGTCG 58.693 43.478 0.00 0.00 0.00 4.35
177 178 3.399330 TCTCCAGCTTAACTTTTGTCGG 58.601 45.455 0.00 0.00 0.00 4.79
178 179 2.484264 CTCCAGCTTAACTTTTGTCGGG 59.516 50.000 0.00 0.00 0.00 5.14
179 180 1.539827 CCAGCTTAACTTTTGTCGGGG 59.460 52.381 0.00 0.00 0.00 5.73
180 181 1.539827 CAGCTTAACTTTTGTCGGGGG 59.460 52.381 0.00 0.00 0.00 5.40
181 182 1.422402 AGCTTAACTTTTGTCGGGGGA 59.578 47.619 0.00 0.00 0.00 4.81
182 183 2.158579 AGCTTAACTTTTGTCGGGGGAA 60.159 45.455 0.00 0.00 0.00 3.97
183 184 2.823747 GCTTAACTTTTGTCGGGGGAAT 59.176 45.455 0.00 0.00 0.00 3.01
184 185 4.011698 GCTTAACTTTTGTCGGGGGAATA 58.988 43.478 0.00 0.00 0.00 1.75
185 186 4.142534 GCTTAACTTTTGTCGGGGGAATAC 60.143 45.833 0.00 0.00 0.00 1.89
186 187 3.512219 AACTTTTGTCGGGGGAATACA 57.488 42.857 0.00 0.00 0.00 2.29
187 188 3.512219 ACTTTTGTCGGGGGAATACAA 57.488 42.857 0.00 0.00 0.00 2.41
188 189 3.834938 ACTTTTGTCGGGGGAATACAAA 58.165 40.909 0.00 0.00 40.36 2.83
189 190 3.824443 ACTTTTGTCGGGGGAATACAAAG 59.176 43.478 0.00 0.00 42.28 2.77
190 191 2.500392 TTGTCGGGGGAATACAAAGG 57.500 50.000 0.00 0.00 30.54 3.11
191 192 0.034863 TGTCGGGGGAATACAAAGGC 60.035 55.000 0.00 0.00 0.00 4.35
192 193 0.255033 GTCGGGGGAATACAAAGGCT 59.745 55.000 0.00 0.00 0.00 4.58
193 194 0.544697 TCGGGGGAATACAAAGGCTC 59.455 55.000 0.00 0.00 0.00 4.70
194 195 0.254747 CGGGGGAATACAAAGGCTCA 59.745 55.000 0.00 0.00 0.00 4.26
195 196 1.133792 CGGGGGAATACAAAGGCTCAT 60.134 52.381 0.00 0.00 0.00 2.90
196 197 2.105821 CGGGGGAATACAAAGGCTCATA 59.894 50.000 0.00 0.00 0.00 2.15
197 198 3.244911 CGGGGGAATACAAAGGCTCATAT 60.245 47.826 0.00 0.00 0.00 1.78
198 199 4.019681 CGGGGGAATACAAAGGCTCATATA 60.020 45.833 0.00 0.00 0.00 0.86
199 200 5.254115 GGGGGAATACAAAGGCTCATATAC 58.746 45.833 0.00 0.00 0.00 1.47
200 201 5.014228 GGGGGAATACAAAGGCTCATATACT 59.986 44.000 0.00 0.00 0.00 2.12
201 202 6.214819 GGGGGAATACAAAGGCTCATATACTA 59.785 42.308 0.00 0.00 0.00 1.82
202 203 7.104290 GGGGAATACAAAGGCTCATATACTAC 58.896 42.308 0.00 0.00 0.00 2.73
203 204 7.104290 GGGAATACAAAGGCTCATATACTACC 58.896 42.308 0.00 0.00 0.00 3.18
204 205 7.038231 GGGAATACAAAGGCTCATATACTACCT 60.038 40.741 0.00 0.00 0.00 3.08
205 206 9.032624 GGAATACAAAGGCTCATATACTACCTA 57.967 37.037 0.00 0.00 0.00 3.08
209 210 7.736893 ACAAAGGCTCATATACTACCTAAAGG 58.263 38.462 0.00 0.00 42.17 3.11
232 233 9.745018 AAGGTAATCAATATATAGCTTGCATGT 57.255 29.630 0.00 0.00 36.37 3.21
233 234 9.745018 AGGTAATCAATATATAGCTTGCATGTT 57.255 29.630 0.00 0.00 0.00 2.71
234 235 9.994432 GGTAATCAATATATAGCTTGCATGTTC 57.006 33.333 0.00 0.00 0.00 3.18
235 236 9.994432 GTAATCAATATATAGCTTGCATGTTCC 57.006 33.333 0.00 0.00 0.00 3.62
236 237 8.640063 AATCAATATATAGCTTGCATGTTCCA 57.360 30.769 0.00 0.00 0.00 3.53
237 238 8.818622 ATCAATATATAGCTTGCATGTTCCAT 57.181 30.769 0.00 0.00 0.00 3.41
238 239 8.272545 TCAATATATAGCTTGCATGTTCCATC 57.727 34.615 0.00 0.00 0.00 3.51
239 240 6.915544 ATATATAGCTTGCATGTTCCATCG 57.084 37.500 0.00 0.00 0.00 3.84
240 241 2.401583 TAGCTTGCATGTTCCATCGT 57.598 45.000 0.00 0.00 0.00 3.73
241 242 1.538047 AGCTTGCATGTTCCATCGTT 58.462 45.000 1.14 0.00 0.00 3.85
242 243 2.710377 AGCTTGCATGTTCCATCGTTA 58.290 42.857 1.14 0.00 0.00 3.18
243 244 3.081061 AGCTTGCATGTTCCATCGTTAA 58.919 40.909 1.14 0.00 0.00 2.01
244 245 3.505680 AGCTTGCATGTTCCATCGTTAAA 59.494 39.130 1.14 0.00 0.00 1.52
245 246 4.158394 AGCTTGCATGTTCCATCGTTAAAT 59.842 37.500 1.14 0.00 0.00 1.40
246 247 5.356751 AGCTTGCATGTTCCATCGTTAAATA 59.643 36.000 1.14 0.00 0.00 1.40
247 248 5.455525 GCTTGCATGTTCCATCGTTAAATAC 59.544 40.000 1.14 0.00 0.00 1.89
248 249 6.502136 TTGCATGTTCCATCGTTAAATACA 57.498 33.333 0.00 0.00 0.00 2.29
249 250 6.691754 TGCATGTTCCATCGTTAAATACAT 57.308 33.333 0.00 0.00 0.00 2.29
250 251 7.094508 TGCATGTTCCATCGTTAAATACATT 57.905 32.000 0.00 0.00 0.00 2.71
251 252 7.542890 TGCATGTTCCATCGTTAAATACATTT 58.457 30.769 0.00 0.00 0.00 2.32
252 253 7.487509 TGCATGTTCCATCGTTAAATACATTTG 59.512 33.333 0.00 0.00 0.00 2.32
253 254 7.043458 GCATGTTCCATCGTTAAATACATTTGG 60.043 37.037 0.00 0.00 0.00 3.28
254 255 7.689446 TGTTCCATCGTTAAATACATTTGGA 57.311 32.000 0.00 0.00 30.89 3.53
255 256 8.112016 TGTTCCATCGTTAAATACATTTGGAA 57.888 30.769 0.00 0.00 36.82 3.53
256 257 8.744652 TGTTCCATCGTTAAATACATTTGGAAT 58.255 29.630 4.55 0.00 39.17 3.01
260 261 9.180678 CCATCGTTAAATACATTTGGAATAAGC 57.819 33.333 0.00 0.00 0.00 3.09
261 262 9.729023 CATCGTTAAATACATTTGGAATAAGCA 57.271 29.630 0.00 0.00 0.00 3.91
269 270 6.363577 ACATTTGGAATAAGCATACAGTCG 57.636 37.500 0.00 0.00 0.00 4.18
270 271 5.880332 ACATTTGGAATAAGCATACAGTCGT 59.120 36.000 0.00 0.00 0.00 4.34
271 272 5.794687 TTTGGAATAAGCATACAGTCGTG 57.205 39.130 0.00 0.00 0.00 4.35
272 273 4.465632 TGGAATAAGCATACAGTCGTGT 57.534 40.909 0.00 0.00 41.06 4.49
273 274 4.827692 TGGAATAAGCATACAGTCGTGTT 58.172 39.130 0.00 0.00 38.19 3.32
274 275 5.968254 TGGAATAAGCATACAGTCGTGTTA 58.032 37.500 0.00 0.00 38.19 2.41
275 276 6.399743 TGGAATAAGCATACAGTCGTGTTAA 58.600 36.000 0.00 0.00 38.19 2.01
276 277 7.045416 TGGAATAAGCATACAGTCGTGTTAAT 58.955 34.615 0.00 0.00 38.19 1.40
277 278 8.198778 TGGAATAAGCATACAGTCGTGTTAATA 58.801 33.333 0.00 0.00 38.19 0.98
278 279 9.204570 GGAATAAGCATACAGTCGTGTTAATAT 57.795 33.333 0.00 0.00 38.19 1.28
281 282 7.843490 AAGCATACAGTCGTGTTAATATTGT 57.157 32.000 0.00 0.00 38.19 2.71
282 283 7.234187 AGCATACAGTCGTGTTAATATTGTG 57.766 36.000 0.00 0.00 38.19 3.33
283 284 5.901884 GCATACAGTCGTGTTAATATTGTGC 59.098 40.000 0.00 0.00 38.19 4.57
284 285 6.456315 GCATACAGTCGTGTTAATATTGTGCA 60.456 38.462 0.00 0.00 38.19 4.57
285 286 5.277601 ACAGTCGTGTTAATATTGTGCAC 57.722 39.130 10.75 10.75 30.30 4.57
289 290 4.060288 CGTGTTAATATTGTGCACGTGT 57.940 40.909 18.38 2.92 45.07 4.49
290 291 3.837999 CGTGTTAATATTGTGCACGTGTG 59.162 43.478 18.38 0.00 45.07 3.82
291 292 4.376514 CGTGTTAATATTGTGCACGTGTGA 60.377 41.667 18.38 0.81 45.07 3.58
292 293 5.444983 GTGTTAATATTGTGCACGTGTGAA 58.555 37.500 18.38 7.90 0.00 3.18
293 294 5.338559 GTGTTAATATTGTGCACGTGTGAAC 59.661 40.000 18.38 13.54 39.61 3.18
294 295 5.007724 TGTTAATATTGTGCACGTGTGAACA 59.992 36.000 18.38 15.93 46.84 3.18
298 299 2.185867 TGTGCACGTGTGAACAAATG 57.814 45.000 18.38 0.00 45.62 2.32
299 300 1.740025 TGTGCACGTGTGAACAAATGA 59.260 42.857 18.38 0.00 45.62 2.57
300 301 2.162408 TGTGCACGTGTGAACAAATGAA 59.838 40.909 18.38 0.00 45.62 2.57
301 302 3.175152 GTGCACGTGTGAACAAATGAAA 58.825 40.909 18.38 0.00 38.99 2.69
302 303 3.796178 GTGCACGTGTGAACAAATGAAAT 59.204 39.130 18.38 0.00 38.99 2.17
303 304 4.267452 GTGCACGTGTGAACAAATGAAATT 59.733 37.500 18.38 0.00 38.99 1.82
304 305 4.267214 TGCACGTGTGAACAAATGAAATTG 59.733 37.500 18.38 0.00 36.10 2.32
305 306 4.750121 CACGTGTGAACAAATGAAATTGC 58.250 39.130 7.58 0.00 36.10 3.56
306 307 3.485378 ACGTGTGAACAAATGAAATTGCG 59.515 39.130 0.00 0.00 36.10 4.85
307 308 3.121396 CGTGTGAACAAATGAAATTGCGG 60.121 43.478 0.00 0.00 36.10 5.69
308 309 3.801594 GTGTGAACAAATGAAATTGCGGT 59.198 39.130 0.00 0.00 36.10 5.68
309 310 4.979197 GTGTGAACAAATGAAATTGCGGTA 59.021 37.500 0.00 0.00 36.10 4.02
310 311 5.633182 GTGTGAACAAATGAAATTGCGGTAT 59.367 36.000 0.00 0.00 36.10 2.73
311 312 5.861251 TGTGAACAAATGAAATTGCGGTATC 59.139 36.000 0.00 0.00 36.10 2.24
312 313 5.288472 GTGAACAAATGAAATTGCGGTATCC 59.712 40.000 0.00 0.00 36.10 2.59
313 314 5.047731 TGAACAAATGAAATTGCGGTATCCA 60.048 36.000 0.00 0.00 36.10 3.41
314 315 5.398603 ACAAATGAAATTGCGGTATCCAA 57.601 34.783 0.00 0.00 36.10 3.53
315 316 5.976458 ACAAATGAAATTGCGGTATCCAAT 58.024 33.333 0.00 0.00 36.10 3.16
316 317 6.405538 ACAAATGAAATTGCGGTATCCAATT 58.594 32.000 0.00 0.00 42.83 2.32
317 318 6.534793 ACAAATGAAATTGCGGTATCCAATTC 59.465 34.615 3.77 0.00 40.83 2.17
318 319 6.469782 AATGAAATTGCGGTATCCAATTCT 57.530 33.333 3.77 0.00 40.83 2.40
319 320 5.247507 TGAAATTGCGGTATCCAATTCTG 57.752 39.130 3.77 0.00 40.83 3.02
320 321 4.946772 TGAAATTGCGGTATCCAATTCTGA 59.053 37.500 3.77 0.00 40.83 3.27
321 322 5.417266 TGAAATTGCGGTATCCAATTCTGAA 59.583 36.000 0.00 0.00 40.83 3.02
322 323 5.505173 AATTGCGGTATCCAATTCTGAAG 57.495 39.130 0.00 0.00 38.19 3.02
323 324 3.904800 TGCGGTATCCAATTCTGAAGA 57.095 42.857 0.00 0.00 0.00 2.87
324 325 3.531538 TGCGGTATCCAATTCTGAAGAC 58.468 45.455 0.00 0.00 0.00 3.01
325 326 3.197766 TGCGGTATCCAATTCTGAAGACT 59.802 43.478 0.00 0.00 0.00 3.24
326 327 3.804873 GCGGTATCCAATTCTGAAGACTC 59.195 47.826 0.00 0.00 0.00 3.36
327 328 4.680708 GCGGTATCCAATTCTGAAGACTCA 60.681 45.833 0.00 0.00 0.00 3.41
328 329 5.605534 CGGTATCCAATTCTGAAGACTCAT 58.394 41.667 0.00 0.00 0.00 2.90
329 330 5.464722 CGGTATCCAATTCTGAAGACTCATG 59.535 44.000 0.00 0.00 0.00 3.07
330 331 6.352516 GGTATCCAATTCTGAAGACTCATGT 58.647 40.000 0.00 0.00 0.00 3.21
331 332 6.481644 GGTATCCAATTCTGAAGACTCATGTC 59.518 42.308 0.00 0.00 43.22 3.06
332 333 5.488262 TCCAATTCTGAAGACTCATGTCA 57.512 39.130 0.00 0.00 45.20 3.58
333 334 6.058553 TCCAATTCTGAAGACTCATGTCAT 57.941 37.500 0.00 0.00 45.20 3.06
334 335 5.878669 TCCAATTCTGAAGACTCATGTCATG 59.121 40.000 6.47 6.47 45.20 3.07
335 336 5.878669 CCAATTCTGAAGACTCATGTCATGA 59.121 40.000 14.76 14.76 45.20 3.07
336 337 6.373495 CCAATTCTGAAGACTCATGTCATGAA 59.627 38.462 16.20 0.16 45.20 2.57
337 338 7.414208 CCAATTCTGAAGACTCATGTCATGAAG 60.414 40.741 16.20 9.73 45.20 3.02
338 339 5.990120 TCTGAAGACTCATGTCATGAAGA 57.010 39.130 16.20 11.73 45.20 2.87
339 340 6.541934 TCTGAAGACTCATGTCATGAAGAT 57.458 37.500 16.20 5.43 45.20 2.40
340 341 6.944096 TCTGAAGACTCATGTCATGAAGATT 58.056 36.000 16.20 10.48 45.20 2.40
341 342 8.071177 TCTGAAGACTCATGTCATGAAGATTA 57.929 34.615 16.20 2.04 45.20 1.75
342 343 8.702819 TCTGAAGACTCATGTCATGAAGATTAT 58.297 33.333 16.20 1.83 45.20 1.28
343 344 9.327628 CTGAAGACTCATGTCATGAAGATTATT 57.672 33.333 16.20 5.28 45.20 1.40
388 389 8.753497 AATTTTCTATGGTAAAGGACTCATCC 57.247 34.615 0.00 0.00 46.69 3.51
403 404 6.831976 GGACTCATCCATTTACCTCATTACT 58.168 40.000 0.00 0.00 45.47 2.24
404 405 7.283329 GGACTCATCCATTTACCTCATTACTT 58.717 38.462 0.00 0.00 45.47 2.24
405 406 7.775561 GGACTCATCCATTTACCTCATTACTTT 59.224 37.037 0.00 0.00 45.47 2.66
406 407 9.178758 GACTCATCCATTTACCTCATTACTTTT 57.821 33.333 0.00 0.00 0.00 2.27
407 408 8.960591 ACTCATCCATTTACCTCATTACTTTTG 58.039 33.333 0.00 0.00 0.00 2.44
408 409 8.877864 TCATCCATTTACCTCATTACTTTTGT 57.122 30.769 0.00 0.00 0.00 2.83
409 410 9.308000 TCATCCATTTACCTCATTACTTTTGTT 57.692 29.630 0.00 0.00 0.00 2.83
410 411 9.927668 CATCCATTTACCTCATTACTTTTGTTT 57.072 29.630 0.00 0.00 0.00 2.83
412 413 9.974980 TCCATTTACCTCATTACTTTTGTTTTC 57.025 29.630 0.00 0.00 0.00 2.29
413 414 8.911662 CCATTTACCTCATTACTTTTGTTTTCG 58.088 33.333 0.00 0.00 0.00 3.46
414 415 9.672086 CATTTACCTCATTACTTTTGTTTTCGA 57.328 29.630 0.00 0.00 0.00 3.71
426 427 6.591313 TTTTGTTTTCGAAAGCCATTTACC 57.409 33.333 20.14 0.00 0.00 2.85
427 428 4.245845 TGTTTTCGAAAGCCATTTACCC 57.754 40.909 20.14 0.00 0.00 3.69
428 429 3.006003 TGTTTTCGAAAGCCATTTACCCC 59.994 43.478 20.14 0.00 0.00 4.95
429 430 2.588464 TTCGAAAGCCATTTACCCCA 57.412 45.000 0.00 0.00 0.00 4.96
430 431 2.818751 TCGAAAGCCATTTACCCCAT 57.181 45.000 0.00 0.00 0.00 4.00
431 432 3.094484 TCGAAAGCCATTTACCCCATT 57.906 42.857 0.00 0.00 0.00 3.16
432 433 4.237976 TCGAAAGCCATTTACCCCATTA 57.762 40.909 0.00 0.00 0.00 1.90
433 434 3.949113 TCGAAAGCCATTTACCCCATTAC 59.051 43.478 0.00 0.00 0.00 1.89
434 435 3.951680 CGAAAGCCATTTACCCCATTACT 59.048 43.478 0.00 0.00 0.00 2.24
435 436 4.401202 CGAAAGCCATTTACCCCATTACTT 59.599 41.667 0.00 0.00 0.00 2.24
436 437 5.105513 CGAAAGCCATTTACCCCATTACTTT 60.106 40.000 0.00 0.00 0.00 2.66
437 438 6.573485 CGAAAGCCATTTACCCCATTACTTTT 60.573 38.462 0.00 0.00 0.00 2.27
438 439 5.675684 AGCCATTTACCCCATTACTTTTG 57.324 39.130 0.00 0.00 0.00 2.44
439 440 4.469586 AGCCATTTACCCCATTACTTTTGG 59.530 41.667 0.00 0.00 0.00 3.28
440 441 4.224147 GCCATTTACCCCATTACTTTTGGT 59.776 41.667 0.00 0.00 31.99 3.67
441 442 5.422650 GCCATTTACCCCATTACTTTTGGTA 59.577 40.000 0.00 0.00 31.99 3.25
442 443 6.099125 GCCATTTACCCCATTACTTTTGGTAT 59.901 38.462 0.00 0.00 31.98 2.73
443 444 7.496747 CCATTTACCCCATTACTTTTGGTATG 58.503 38.462 0.00 0.00 31.98 2.39
444 445 7.343316 CCATTTACCCCATTACTTTTGGTATGA 59.657 37.037 0.00 0.00 31.98 2.15
445 446 8.923270 CATTTACCCCATTACTTTTGGTATGAT 58.077 33.333 0.00 0.00 31.98 2.45
447 448 9.992442 TTTACCCCATTACTTTTGGTATGATAA 57.008 29.630 0.00 0.00 31.98 1.75
448 449 7.891498 ACCCCATTACTTTTGGTATGATAAC 57.109 36.000 0.00 0.00 31.99 1.89
449 450 7.648770 ACCCCATTACTTTTGGTATGATAACT 58.351 34.615 0.00 0.00 31.99 2.24
450 451 7.559897 ACCCCATTACTTTTGGTATGATAACTG 59.440 37.037 0.00 0.00 31.99 3.16
451 452 7.425606 CCCATTACTTTTGGTATGATAACTGC 58.574 38.462 0.00 0.00 31.99 4.40
452 453 7.285401 CCCATTACTTTTGGTATGATAACTGCT 59.715 37.037 0.00 0.00 31.99 4.24
453 454 9.337396 CCATTACTTTTGGTATGATAACTGCTA 57.663 33.333 0.00 0.00 0.00 3.49
456 457 9.953565 TTACTTTTGGTATGATAACTGCTAAGT 57.046 29.630 0.00 0.00 38.71 2.24
458 459 9.953565 ACTTTTGGTATGATAACTGCTAAGTAA 57.046 29.630 0.00 0.00 34.77 2.24
463 464 9.687210 TGGTATGATAACTGCTAAGTAAATACG 57.313 33.333 0.00 0.00 34.77 3.06
464 465 9.688592 GGTATGATAACTGCTAAGTAAATACGT 57.311 33.333 0.00 0.00 34.77 3.57
467 468 8.415192 TGATAACTGCTAAGTAAATACGTTGG 57.585 34.615 0.00 0.00 34.77 3.77
468 469 8.252417 TGATAACTGCTAAGTAAATACGTTGGA 58.748 33.333 0.00 0.00 34.77 3.53
469 470 9.090692 GATAACTGCTAAGTAAATACGTTGGAA 57.909 33.333 0.00 0.00 34.77 3.53
470 471 7.916914 AACTGCTAAGTAAATACGTTGGAAT 57.083 32.000 0.00 0.00 34.77 3.01
471 472 7.916914 ACTGCTAAGTAAATACGTTGGAATT 57.083 32.000 0.00 0.00 33.79 2.17
472 473 8.331730 ACTGCTAAGTAAATACGTTGGAATTT 57.668 30.769 0.00 0.00 33.79 1.82
473 474 9.439500 ACTGCTAAGTAAATACGTTGGAATTTA 57.561 29.630 0.00 0.00 33.79 1.40
474 475 9.916397 CTGCTAAGTAAATACGTTGGAATTTAG 57.084 33.333 0.00 0.00 30.34 1.85
475 476 8.392612 TGCTAAGTAAATACGTTGGAATTTAGC 58.607 33.333 17.29 17.29 39.55 3.09
476 477 8.610035 GCTAAGTAAATACGTTGGAATTTAGCT 58.390 33.333 17.05 0.00 37.41 3.32
478 479 8.556213 AAGTAAATACGTTGGAATTTAGCTCA 57.444 30.769 0.00 0.00 30.34 4.26
479 480 8.732746 AGTAAATACGTTGGAATTTAGCTCAT 57.267 30.769 0.00 0.00 30.34 2.90
480 481 8.612619 AGTAAATACGTTGGAATTTAGCTCATG 58.387 33.333 0.00 0.00 30.34 3.07
481 482 7.391148 AAATACGTTGGAATTTAGCTCATGT 57.609 32.000 0.00 0.00 0.00 3.21
482 483 7.391148 AATACGTTGGAATTTAGCTCATGTT 57.609 32.000 0.00 0.00 0.00 2.71
483 484 5.046910 ACGTTGGAATTTAGCTCATGTTG 57.953 39.130 0.00 0.00 0.00 3.33
484 485 4.759693 ACGTTGGAATTTAGCTCATGTTGA 59.240 37.500 0.00 0.00 0.00 3.18
485 486 5.088739 CGTTGGAATTTAGCTCATGTTGAC 58.911 41.667 0.00 0.00 0.00 3.18
486 487 5.334802 CGTTGGAATTTAGCTCATGTTGACA 60.335 40.000 0.00 0.00 0.00 3.58
487 488 6.623549 CGTTGGAATTTAGCTCATGTTGACAT 60.624 38.462 0.00 0.00 36.96 3.06
503 504 8.776376 ATGTTGACATGAATTATTTTTGGACC 57.224 30.769 0.00 0.00 34.83 4.46
504 505 7.730084 TGTTGACATGAATTATTTTTGGACCA 58.270 30.769 0.00 0.00 0.00 4.02
505 506 7.871973 TGTTGACATGAATTATTTTTGGACCAG 59.128 33.333 0.00 0.00 0.00 4.00
506 507 7.537596 TGACATGAATTATTTTTGGACCAGT 57.462 32.000 0.00 0.00 0.00 4.00
507 508 7.961351 TGACATGAATTATTTTTGGACCAGTT 58.039 30.769 0.00 0.00 0.00 3.16
508 509 9.083422 TGACATGAATTATTTTTGGACCAGTTA 57.917 29.630 0.00 0.00 0.00 2.24
518 519 7.531857 TTTTTGGACCAGTTATTATCTTGCA 57.468 32.000 0.00 0.00 0.00 4.08
519 520 7.716799 TTTTGGACCAGTTATTATCTTGCAT 57.283 32.000 0.00 0.00 0.00 3.96
520 521 8.815565 TTTTGGACCAGTTATTATCTTGCATA 57.184 30.769 0.00 0.00 0.00 3.14
521 522 8.815565 TTTGGACCAGTTATTATCTTGCATAA 57.184 30.769 0.00 0.00 0.00 1.90
522 523 8.995027 TTGGACCAGTTATTATCTTGCATAAT 57.005 30.769 0.00 0.00 0.00 1.28
523 524 8.621532 TGGACCAGTTATTATCTTGCATAATC 57.378 34.615 0.00 0.00 0.00 1.75
524 525 8.217111 TGGACCAGTTATTATCTTGCATAATCA 58.783 33.333 0.00 0.00 0.00 2.57
525 526 9.066892 GGACCAGTTATTATCTTGCATAATCAA 57.933 33.333 0.00 0.00 0.00 2.57
546 547 7.997107 TCAAATTTAATCAATCTGATGCAGC 57.003 32.000 0.00 0.00 37.15 5.25
547 548 7.548967 TCAAATTTAATCAATCTGATGCAGCA 58.451 30.769 3.82 3.82 37.15 4.41
548 549 7.490079 TCAAATTTAATCAATCTGATGCAGCAC 59.510 33.333 0.00 0.00 37.15 4.40
549 550 4.906065 TTAATCAATCTGATGCAGCACC 57.094 40.909 0.00 0.00 37.15 5.01
550 551 2.430248 ATCAATCTGATGCAGCACCA 57.570 45.000 0.00 0.00 35.43 4.17
551 552 1.456296 TCAATCTGATGCAGCACCAC 58.544 50.000 0.00 0.00 0.00 4.16
552 553 1.003928 TCAATCTGATGCAGCACCACT 59.996 47.619 0.00 0.00 0.00 4.00
553 554 1.816835 CAATCTGATGCAGCACCACTT 59.183 47.619 0.00 0.00 0.00 3.16
554 555 1.747709 ATCTGATGCAGCACCACTTC 58.252 50.000 0.00 0.00 0.00 3.01
555 556 0.397564 TCTGATGCAGCACCACTTCA 59.602 50.000 0.00 0.00 0.00 3.02
556 557 1.003928 TCTGATGCAGCACCACTTCAT 59.996 47.619 0.00 0.00 34.70 2.57
557 558 1.816835 CTGATGCAGCACCACTTCATT 59.183 47.619 0.00 0.00 31.90 2.57
558 559 3.011818 CTGATGCAGCACCACTTCATTA 58.988 45.455 0.00 0.00 31.90 1.90
559 560 3.419943 TGATGCAGCACCACTTCATTAA 58.580 40.909 0.00 0.00 31.90 1.40
560 561 3.825585 TGATGCAGCACCACTTCATTAAA 59.174 39.130 0.00 0.00 31.90 1.52
561 562 3.641437 TGCAGCACCACTTCATTAAAC 57.359 42.857 0.00 0.00 0.00 2.01
562 563 2.295909 TGCAGCACCACTTCATTAAACC 59.704 45.455 0.00 0.00 0.00 3.27
563 564 2.558359 GCAGCACCACTTCATTAAACCT 59.442 45.455 0.00 0.00 0.00 3.50
564 565 3.612479 GCAGCACCACTTCATTAAACCTG 60.612 47.826 0.00 0.00 0.00 4.00
565 566 3.820467 CAGCACCACTTCATTAAACCTGA 59.180 43.478 0.00 0.00 0.00 3.86
566 567 4.460382 CAGCACCACTTCATTAAACCTGAT 59.540 41.667 0.00 0.00 0.00 2.90
567 568 5.047802 CAGCACCACTTCATTAAACCTGATT 60.048 40.000 0.00 0.00 0.00 2.57
568 569 5.183904 AGCACCACTTCATTAAACCTGATTC 59.816 40.000 0.00 0.00 0.00 2.52
569 570 5.048083 GCACCACTTCATTAAACCTGATTCA 60.048 40.000 0.00 0.00 0.00 2.57
570 571 6.350445 GCACCACTTCATTAAACCTGATTCAT 60.350 38.462 0.00 0.00 0.00 2.57
571 572 7.605449 CACCACTTCATTAAACCTGATTCATT 58.395 34.615 0.00 0.00 0.00 2.57
572 573 8.739039 CACCACTTCATTAAACCTGATTCATTA 58.261 33.333 0.00 0.00 0.00 1.90
573 574 9.479549 ACCACTTCATTAAACCTGATTCATTAT 57.520 29.630 0.00 0.00 0.00 1.28
584 585 9.911788 AAACCTGATTCATTATTAGAGTGATGT 57.088 29.630 0.00 0.00 0.00 3.06
585 586 9.911788 AACCTGATTCATTATTAGAGTGATGTT 57.088 29.630 0.00 0.00 0.00 2.71
586 587 9.911788 ACCTGATTCATTATTAGAGTGATGTTT 57.088 29.630 0.00 0.00 0.00 2.83
597 598 5.824904 AGAGTGATGTTTGTTGATATGCC 57.175 39.130 0.00 0.00 0.00 4.40
598 599 5.503927 AGAGTGATGTTTGTTGATATGCCT 58.496 37.500 0.00 0.00 0.00 4.75
599 600 5.948162 AGAGTGATGTTTGTTGATATGCCTT 59.052 36.000 0.00 0.00 0.00 4.35
600 601 7.112122 AGAGTGATGTTTGTTGATATGCCTTA 58.888 34.615 0.00 0.00 0.00 2.69
601 602 7.776969 AGAGTGATGTTTGTTGATATGCCTTAT 59.223 33.333 0.00 0.00 0.00 1.73
602 603 7.709947 AGTGATGTTTGTTGATATGCCTTATG 58.290 34.615 0.00 0.00 0.00 1.90
603 604 7.557358 AGTGATGTTTGTTGATATGCCTTATGA 59.443 33.333 0.00 0.00 0.00 2.15
604 605 8.355169 GTGATGTTTGTTGATATGCCTTATGAT 58.645 33.333 0.00 0.00 0.00 2.45
605 606 9.571816 TGATGTTTGTTGATATGCCTTATGATA 57.428 29.630 0.00 0.00 0.00 2.15
656 657 4.683334 GTTGCAACGCACGGGCTC 62.683 66.667 14.90 0.00 38.71 4.70
657 658 4.927782 TTGCAACGCACGGGCTCT 62.928 61.111 8.62 0.00 38.71 4.09
658 659 4.927782 TGCAACGCACGGGCTCTT 62.928 61.111 8.62 0.00 38.10 2.85
659 660 3.660111 GCAACGCACGGGCTCTTT 61.660 61.111 8.62 0.00 38.10 2.52
660 661 3.030652 CAACGCACGGGCTCTTTT 58.969 55.556 8.62 0.00 38.10 2.27
661 662 1.082104 CAACGCACGGGCTCTTTTC 60.082 57.895 8.62 0.00 38.10 2.29
662 663 2.258726 AACGCACGGGCTCTTTTCC 61.259 57.895 8.62 0.00 38.10 3.13
663 664 2.358737 CGCACGGGCTCTTTTCCT 60.359 61.111 8.62 0.00 38.10 3.36
664 665 1.079405 CGCACGGGCTCTTTTCCTA 60.079 57.895 8.62 0.00 38.10 2.94
665 666 1.084370 CGCACGGGCTCTTTTCCTAG 61.084 60.000 8.62 0.00 38.10 3.02
666 667 0.036294 GCACGGGCTCTTTTCCTAGT 60.036 55.000 0.00 0.00 36.96 2.57
667 668 1.206371 GCACGGGCTCTTTTCCTAGTA 59.794 52.381 0.00 0.00 36.96 1.82
668 669 2.889852 CACGGGCTCTTTTCCTAGTAC 58.110 52.381 0.00 0.00 0.00 2.73
669 670 1.829849 ACGGGCTCTTTTCCTAGTACC 59.170 52.381 0.00 0.00 0.00 3.34
1069 2250 3.883744 CTTGCCGCCACCTCGACTT 62.884 63.158 0.00 0.00 0.00 3.01
1178 2361 2.294078 CCGTCCTTCCCTGCTCCTT 61.294 63.158 0.00 0.00 0.00 3.36
1251 2434 3.431725 GAACGAAGCCGCCCCAAG 61.432 66.667 0.00 0.00 39.95 3.61
1602 3297 1.425412 CTTCCAGTACAACGTTCCCG 58.575 55.000 0.00 0.00 40.83 5.14
1624 3319 5.095490 CGAATGCAAAGTGTCCCTTTATTC 58.905 41.667 0.00 0.00 41.51 1.75
1648 3343 0.322816 TGCCCAGCTCCAATCTTGAC 60.323 55.000 0.00 0.00 0.00 3.18
1971 3678 8.839310 AAAATGGTCTCTGTCACATATATAGC 57.161 34.615 0.00 0.00 0.00 2.97
2232 4049 7.490079 ACCTAAAAAGTTTTTCGGCTTTTAGTG 59.510 33.333 24.34 9.40 42.10 2.74
2255 4072 4.406003 GTCAGTTATAGTCATGGACTGGGT 59.594 45.833 9.06 0.00 43.30 4.51
2368 4187 0.985549 GCTAGCTGAACGAACAGACG 59.014 55.000 7.70 0.00 39.94 4.18
2402 4221 5.216566 TGCGAATAAGCACACTAAATGTC 57.783 39.130 0.00 0.00 40.64 3.06
2835 4700 6.743575 ACATACCTGCAGTACAAGAAATTC 57.256 37.500 13.81 0.00 32.46 2.17
2898 4764 6.834168 TTTTTGGATGGAAATAGGTGAGAC 57.166 37.500 0.00 0.00 0.00 3.36
3236 5105 7.704578 TCATCTTAGCTATAGTGTATGGACC 57.295 40.000 0.84 0.00 0.00 4.46
3271 5147 3.908643 AATGATGCTGAGAGCTCTTGA 57.091 42.857 19.36 6.96 42.97 3.02
3508 5398 7.655328 AGATATAATGCTAATGATAGGAAGCGC 59.345 37.037 0.00 0.00 37.80 5.92
3795 7759 9.285770 CATTAGTTGAATGTTGATTCTGTGATG 57.714 33.333 0.00 0.00 40.21 3.07
4319 8368 2.716217 AGCATGGAAAGAAGTGGCTAC 58.284 47.619 0.00 0.00 0.00 3.58
4401 8451 6.513806 TTTCCAGTTATGTGACATGATTGG 57.486 37.500 20.96 20.96 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.907579 TGGCGAATATATAATGCAATGCG 58.092 39.130 0.00 0.00 0.00 4.73
13 14 6.324819 ACTTGGCGAATATATAATGCAATGC 58.675 36.000 0.00 0.00 0.00 3.56
14 15 9.494479 CTTACTTGGCGAATATATAATGCAATG 57.506 33.333 0.00 1.31 0.00 2.82
15 16 9.448438 TCTTACTTGGCGAATATATAATGCAAT 57.552 29.630 0.00 0.00 0.00 3.56
16 17 8.840833 TCTTACTTGGCGAATATATAATGCAA 57.159 30.769 0.00 0.00 0.00 4.08
17 18 8.840833 TTCTTACTTGGCGAATATATAATGCA 57.159 30.769 0.00 0.00 0.00 3.96
26 27 9.005777 ACAAAAACTATTCTTACTTGGCGAATA 57.994 29.630 0.00 0.00 0.00 1.75
27 28 7.882179 ACAAAAACTATTCTTACTTGGCGAAT 58.118 30.769 0.00 0.00 0.00 3.34
28 29 7.266922 ACAAAAACTATTCTTACTTGGCGAA 57.733 32.000 0.00 0.00 0.00 4.70
29 30 6.870971 ACAAAAACTATTCTTACTTGGCGA 57.129 33.333 0.00 0.00 0.00 5.54
30 31 6.915843 ACAACAAAAACTATTCTTACTTGGCG 59.084 34.615 0.00 0.00 0.00 5.69
31 32 7.704899 ACACAACAAAAACTATTCTTACTTGGC 59.295 33.333 0.00 0.00 0.00 4.52
32 33 9.019764 CACACAACAAAAACTATTCTTACTTGG 57.980 33.333 0.00 0.00 0.00 3.61
33 34 8.531530 GCACACAACAAAAACTATTCTTACTTG 58.468 33.333 0.00 0.00 0.00 3.16
34 35 8.247562 TGCACACAACAAAAACTATTCTTACTT 58.752 29.630 0.00 0.00 0.00 2.24
35 36 7.767261 TGCACACAACAAAAACTATTCTTACT 58.233 30.769 0.00 0.00 0.00 2.24
36 37 7.700656 ACTGCACACAACAAAAACTATTCTTAC 59.299 33.333 0.00 0.00 0.00 2.34
37 38 7.767261 ACTGCACACAACAAAAACTATTCTTA 58.233 30.769 0.00 0.00 0.00 2.10
38 39 6.630071 ACTGCACACAACAAAAACTATTCTT 58.370 32.000 0.00 0.00 0.00 2.52
39 40 6.207691 ACTGCACACAACAAAAACTATTCT 57.792 33.333 0.00 0.00 0.00 2.40
40 41 6.885735 AACTGCACACAACAAAAACTATTC 57.114 33.333 0.00 0.00 0.00 1.75
41 42 7.665561 AAAACTGCACACAACAAAAACTATT 57.334 28.000 0.00 0.00 0.00 1.73
42 43 7.665561 AAAAACTGCACACAACAAAAACTAT 57.334 28.000 0.00 0.00 0.00 2.12
69 70 9.295825 TGATAAAATAACAGCTTCTTGAAGGAA 57.704 29.630 11.70 0.00 0.00 3.36
70 71 8.862325 TGATAAAATAACAGCTTCTTGAAGGA 57.138 30.769 11.70 0.00 0.00 3.36
125 126 9.226606 ACTCTTATTTCAATTTCGGTGTCATAA 57.773 29.630 0.00 0.00 0.00 1.90
126 127 8.786826 ACTCTTATTTCAATTTCGGTGTCATA 57.213 30.769 0.00 0.00 0.00 2.15
127 128 7.687941 ACTCTTATTTCAATTTCGGTGTCAT 57.312 32.000 0.00 0.00 0.00 3.06
128 129 7.504924 AACTCTTATTTCAATTTCGGTGTCA 57.495 32.000 0.00 0.00 0.00 3.58
129 130 8.797266 AAAACTCTTATTTCAATTTCGGTGTC 57.203 30.769 0.00 0.00 0.00 3.67
130 131 8.630037 AGAAAACTCTTATTTCAATTTCGGTGT 58.370 29.630 2.32 0.00 38.86 4.16
131 132 9.118236 GAGAAAACTCTTATTTCAATTTCGGTG 57.882 33.333 2.32 0.00 38.86 4.94
132 133 9.067986 AGAGAAAACTCTTATTTCAATTTCGGT 57.932 29.630 0.00 0.00 38.86 4.69
133 134 9.548208 GAGAGAAAACTCTTATTTCAATTTCGG 57.452 33.333 0.00 0.00 38.86 4.30
134 135 9.548208 GGAGAGAAAACTCTTATTTCAATTTCG 57.452 33.333 0.00 0.00 38.86 3.46
137 138 8.518702 GCTGGAGAGAAAACTCTTATTTCAATT 58.481 33.333 0.00 0.00 38.86 2.32
138 139 7.887495 AGCTGGAGAGAAAACTCTTATTTCAAT 59.113 33.333 0.00 0.00 38.86 2.57
139 140 7.227156 AGCTGGAGAGAAAACTCTTATTTCAA 58.773 34.615 0.00 0.00 38.86 2.69
140 141 6.773638 AGCTGGAGAGAAAACTCTTATTTCA 58.226 36.000 0.00 0.00 38.86 2.69
141 142 7.680442 AAGCTGGAGAGAAAACTCTTATTTC 57.320 36.000 0.00 0.00 37.13 2.17
142 143 9.004717 GTTAAGCTGGAGAGAAAACTCTTATTT 57.995 33.333 0.00 0.00 37.13 1.40
143 144 8.379331 AGTTAAGCTGGAGAGAAAACTCTTATT 58.621 33.333 0.00 0.00 37.13 1.40
144 145 7.912719 AGTTAAGCTGGAGAGAAAACTCTTAT 58.087 34.615 0.00 0.00 37.13 1.73
145 146 7.304497 AGTTAAGCTGGAGAGAAAACTCTTA 57.696 36.000 0.00 0.00 37.13 2.10
146 147 6.181206 AGTTAAGCTGGAGAGAAAACTCTT 57.819 37.500 0.00 0.00 37.13 2.85
147 148 5.816955 AGTTAAGCTGGAGAGAAAACTCT 57.183 39.130 0.00 0.00 37.13 3.24
148 149 6.869315 AAAGTTAAGCTGGAGAGAAAACTC 57.131 37.500 0.00 0.00 36.31 3.01
149 150 6.603599 ACAAAAGTTAAGCTGGAGAGAAAACT 59.396 34.615 0.00 0.00 0.00 2.66
150 151 6.796426 ACAAAAGTTAAGCTGGAGAGAAAAC 58.204 36.000 0.00 0.00 0.00 2.43
151 152 6.238374 CGACAAAAGTTAAGCTGGAGAGAAAA 60.238 38.462 0.00 0.00 0.00 2.29
152 153 5.236478 CGACAAAAGTTAAGCTGGAGAGAAA 59.764 40.000 0.00 0.00 0.00 2.52
153 154 4.750098 CGACAAAAGTTAAGCTGGAGAGAA 59.250 41.667 0.00 0.00 0.00 2.87
154 155 4.307432 CGACAAAAGTTAAGCTGGAGAGA 58.693 43.478 0.00 0.00 0.00 3.10
155 156 3.433615 CCGACAAAAGTTAAGCTGGAGAG 59.566 47.826 0.00 0.00 0.00 3.20
156 157 3.399330 CCGACAAAAGTTAAGCTGGAGA 58.601 45.455 0.00 0.00 0.00 3.71
157 158 2.484264 CCCGACAAAAGTTAAGCTGGAG 59.516 50.000 0.00 0.00 0.00 3.86
158 159 2.500229 CCCGACAAAAGTTAAGCTGGA 58.500 47.619 0.00 0.00 0.00 3.86
159 160 1.539827 CCCCGACAAAAGTTAAGCTGG 59.460 52.381 0.00 0.00 0.00 4.85
160 161 1.539827 CCCCCGACAAAAGTTAAGCTG 59.460 52.381 0.00 0.00 0.00 4.24
161 162 1.422402 TCCCCCGACAAAAGTTAAGCT 59.578 47.619 0.00 0.00 0.00 3.74
162 163 1.900245 TCCCCCGACAAAAGTTAAGC 58.100 50.000 0.00 0.00 0.00 3.09
163 164 5.005094 TGTATTCCCCCGACAAAAGTTAAG 58.995 41.667 0.00 0.00 0.00 1.85
164 165 4.983053 TGTATTCCCCCGACAAAAGTTAA 58.017 39.130 0.00 0.00 0.00 2.01
165 166 4.637387 TGTATTCCCCCGACAAAAGTTA 57.363 40.909 0.00 0.00 0.00 2.24
166 167 3.512219 TGTATTCCCCCGACAAAAGTT 57.488 42.857 0.00 0.00 0.00 2.66
167 168 3.512219 TTGTATTCCCCCGACAAAAGT 57.488 42.857 0.00 0.00 30.37 2.66
168 169 3.192633 CCTTTGTATTCCCCCGACAAAAG 59.807 47.826 0.00 0.00 41.24 2.27
169 170 3.158676 CCTTTGTATTCCCCCGACAAAA 58.841 45.455 0.00 0.00 41.24 2.44
170 171 2.797786 CCTTTGTATTCCCCCGACAAA 58.202 47.619 0.00 0.00 39.96 2.83
171 172 1.614850 GCCTTTGTATTCCCCCGACAA 60.615 52.381 0.00 0.00 0.00 3.18
172 173 0.034863 GCCTTTGTATTCCCCCGACA 60.035 55.000 0.00 0.00 0.00 4.35
173 174 0.255033 AGCCTTTGTATTCCCCCGAC 59.745 55.000 0.00 0.00 0.00 4.79
174 175 0.544697 GAGCCTTTGTATTCCCCCGA 59.455 55.000 0.00 0.00 0.00 5.14
175 176 0.254747 TGAGCCTTTGTATTCCCCCG 59.745 55.000 0.00 0.00 0.00 5.73
176 177 2.755952 ATGAGCCTTTGTATTCCCCC 57.244 50.000 0.00 0.00 0.00 5.40
177 178 6.128138 AGTATATGAGCCTTTGTATTCCCC 57.872 41.667 0.00 0.00 0.00 4.81
178 179 7.038231 AGGTAGTATATGAGCCTTTGTATTCCC 60.038 40.741 0.00 0.00 0.00 3.97
179 180 7.908453 AGGTAGTATATGAGCCTTTGTATTCC 58.092 38.462 0.00 0.00 0.00 3.01
183 184 8.867097 CCTTTAGGTAGTATATGAGCCTTTGTA 58.133 37.037 0.00 0.00 0.00 2.41
184 185 7.736893 CCTTTAGGTAGTATATGAGCCTTTGT 58.263 38.462 0.00 0.00 0.00 2.83
206 207 9.745018 ACATGCAAGCTATATATTGATTACCTT 57.255 29.630 0.00 0.00 0.00 3.50
207 208 9.745018 AACATGCAAGCTATATATTGATTACCT 57.255 29.630 0.00 0.00 0.00 3.08
208 209 9.994432 GAACATGCAAGCTATATATTGATTACC 57.006 33.333 0.00 0.00 0.00 2.85
209 210 9.994432 GGAACATGCAAGCTATATATTGATTAC 57.006 33.333 0.00 0.00 0.00 1.89
210 211 9.737844 TGGAACATGCAAGCTATATATTGATTA 57.262 29.630 0.00 0.00 0.00 1.75
211 212 8.640063 TGGAACATGCAAGCTATATATTGATT 57.360 30.769 0.00 0.00 0.00 2.57
230 231 8.744652 ATTCCAAATGTATTTAACGATGGAACA 58.255 29.630 6.09 0.00 43.52 3.18
234 235 9.180678 GCTTATTCCAAATGTATTTAACGATGG 57.819 33.333 0.00 0.00 0.00 3.51
235 236 9.729023 TGCTTATTCCAAATGTATTTAACGATG 57.271 29.630 0.00 0.00 0.00 3.84
243 244 8.559536 CGACTGTATGCTTATTCCAAATGTATT 58.440 33.333 0.00 0.00 0.00 1.89
244 245 7.715249 ACGACTGTATGCTTATTCCAAATGTAT 59.285 33.333 0.00 0.00 0.00 2.29
245 246 7.011016 CACGACTGTATGCTTATTCCAAATGTA 59.989 37.037 0.00 0.00 0.00 2.29
246 247 5.880332 ACGACTGTATGCTTATTCCAAATGT 59.120 36.000 0.00 0.00 0.00 2.71
247 248 6.183360 ACACGACTGTATGCTTATTCCAAATG 60.183 38.462 0.00 0.00 0.00 2.32
248 249 5.880332 ACACGACTGTATGCTTATTCCAAAT 59.120 36.000 0.00 0.00 0.00 2.32
249 250 5.242434 ACACGACTGTATGCTTATTCCAAA 58.758 37.500 0.00 0.00 0.00 3.28
250 251 4.827692 ACACGACTGTATGCTTATTCCAA 58.172 39.130 0.00 0.00 0.00 3.53
251 252 4.465632 ACACGACTGTATGCTTATTCCA 57.534 40.909 0.00 0.00 0.00 3.53
252 253 6.897259 TTAACACGACTGTATGCTTATTCC 57.103 37.500 0.00 0.00 0.00 3.01
255 256 9.542462 ACAATATTAACACGACTGTATGCTTAT 57.458 29.630 0.00 0.00 0.00 1.73
256 257 8.813282 CACAATATTAACACGACTGTATGCTTA 58.187 33.333 0.00 0.00 0.00 3.09
257 258 7.676338 GCACAATATTAACACGACTGTATGCTT 60.676 37.037 0.00 0.00 0.00 3.91
258 259 6.238103 GCACAATATTAACACGACTGTATGCT 60.238 38.462 0.00 0.00 0.00 3.79
259 260 5.901884 GCACAATATTAACACGACTGTATGC 59.098 40.000 0.00 0.00 0.00 3.14
260 261 6.899771 GTGCACAATATTAACACGACTGTATG 59.100 38.462 13.17 0.00 0.00 2.39
261 262 7.000575 GTGCACAATATTAACACGACTGTAT 57.999 36.000 13.17 0.00 0.00 2.29
262 263 6.397831 GTGCACAATATTAACACGACTGTA 57.602 37.500 13.17 0.00 0.00 2.74
263 264 5.277601 GTGCACAATATTAACACGACTGT 57.722 39.130 13.17 0.00 0.00 3.55
269 270 5.024768 TCACACGTGCACAATATTAACAC 57.975 39.130 17.22 0.00 0.00 3.32
270 271 5.007724 TGTTCACACGTGCACAATATTAACA 59.992 36.000 17.22 15.43 34.03 2.41
271 272 5.444983 TGTTCACACGTGCACAATATTAAC 58.555 37.500 17.22 13.17 34.03 2.01
272 273 5.674933 TGTTCACACGTGCACAATATTAA 57.325 34.783 17.22 0.49 34.03 1.40
273 274 5.674933 TTGTTCACACGTGCACAATATTA 57.325 34.783 17.22 0.00 40.66 0.98
274 275 4.560136 TTGTTCACACGTGCACAATATT 57.440 36.364 17.22 0.00 40.66 1.28
275 276 4.560136 TTTGTTCACACGTGCACAATAT 57.440 36.364 22.17 0.00 43.81 1.28
276 277 4.035675 TCATTTGTTCACACGTGCACAATA 59.964 37.500 22.17 15.67 43.81 1.90
277 278 2.929531 TTTGTTCACACGTGCACAAT 57.070 40.000 22.17 0.34 43.81 2.71
278 279 2.162408 TCATTTGTTCACACGTGCACAA 59.838 40.909 17.22 18.51 43.00 3.33
279 280 1.740025 TCATTTGTTCACACGTGCACA 59.260 42.857 17.22 13.42 35.08 4.57
280 281 2.466870 TCATTTGTTCACACGTGCAC 57.533 45.000 17.22 6.82 0.00 4.57
281 282 3.494045 TTTCATTTGTTCACACGTGCA 57.506 38.095 17.22 1.90 0.00 4.57
282 283 4.750121 CAATTTCATTTGTTCACACGTGC 58.250 39.130 17.22 0.00 0.00 5.34
283 284 4.603608 CGCAATTTCATTTGTTCACACGTG 60.604 41.667 15.48 15.48 0.00 4.49
284 285 3.485378 CGCAATTTCATTTGTTCACACGT 59.515 39.130 0.00 0.00 0.00 4.49
285 286 3.121396 CCGCAATTTCATTTGTTCACACG 60.121 43.478 0.00 0.00 0.00 4.49
286 287 3.801594 ACCGCAATTTCATTTGTTCACAC 59.198 39.130 0.00 0.00 0.00 3.82
287 288 4.052159 ACCGCAATTTCATTTGTTCACA 57.948 36.364 0.00 0.00 0.00 3.58
288 289 5.288472 GGATACCGCAATTTCATTTGTTCAC 59.712 40.000 0.00 0.00 0.00 3.18
289 290 5.047731 TGGATACCGCAATTTCATTTGTTCA 60.048 36.000 0.00 0.00 0.00 3.18
290 291 5.406649 TGGATACCGCAATTTCATTTGTTC 58.593 37.500 0.00 0.00 0.00 3.18
291 292 5.398603 TGGATACCGCAATTTCATTTGTT 57.601 34.783 0.00 0.00 0.00 2.83
292 293 5.398603 TTGGATACCGCAATTTCATTTGT 57.601 34.783 0.00 0.00 0.00 2.83
293 294 6.757947 AGAATTGGATACCGCAATTTCATTTG 59.242 34.615 0.00 0.00 0.00 2.32
294 295 6.757947 CAGAATTGGATACCGCAATTTCATTT 59.242 34.615 0.00 0.00 0.00 2.32
295 296 6.096705 TCAGAATTGGATACCGCAATTTCATT 59.903 34.615 0.00 0.00 0.00 2.57
296 297 5.593909 TCAGAATTGGATACCGCAATTTCAT 59.406 36.000 0.00 0.00 0.00 2.57
297 298 4.946772 TCAGAATTGGATACCGCAATTTCA 59.053 37.500 0.00 0.00 0.00 2.69
298 299 5.499139 TCAGAATTGGATACCGCAATTTC 57.501 39.130 0.00 0.00 0.00 2.17
299 300 5.652014 TCTTCAGAATTGGATACCGCAATTT 59.348 36.000 0.00 0.00 0.00 1.82
300 301 5.066505 GTCTTCAGAATTGGATACCGCAATT 59.933 40.000 0.00 0.00 0.00 2.32
301 302 4.576463 GTCTTCAGAATTGGATACCGCAAT 59.424 41.667 0.00 0.00 0.00 3.56
302 303 3.938963 GTCTTCAGAATTGGATACCGCAA 59.061 43.478 0.00 0.00 0.00 4.85
303 304 3.197766 AGTCTTCAGAATTGGATACCGCA 59.802 43.478 0.00 0.00 0.00 5.69
304 305 3.798202 AGTCTTCAGAATTGGATACCGC 58.202 45.455 0.00 0.00 0.00 5.68
305 306 5.011090 TGAGTCTTCAGAATTGGATACCG 57.989 43.478 0.00 0.00 0.00 4.02
306 307 6.352516 ACATGAGTCTTCAGAATTGGATACC 58.647 40.000 0.00 0.00 36.61 2.73
307 308 7.044181 TGACATGAGTCTTCAGAATTGGATAC 58.956 38.462 0.00 0.00 45.20 2.24
308 309 7.186570 TGACATGAGTCTTCAGAATTGGATA 57.813 36.000 0.00 0.00 45.20 2.59
309 310 6.058553 TGACATGAGTCTTCAGAATTGGAT 57.941 37.500 0.00 0.00 45.20 3.41
310 311 5.488262 TGACATGAGTCTTCAGAATTGGA 57.512 39.130 0.00 0.00 45.20 3.53
311 312 5.878669 TCATGACATGAGTCTTCAGAATTGG 59.121 40.000 14.24 0.00 45.20 3.16
312 313 6.980051 TCATGACATGAGTCTTCAGAATTG 57.020 37.500 14.24 0.00 45.20 2.32
313 314 7.392418 TCTTCATGACATGAGTCTTCAGAATT 58.608 34.615 17.29 0.00 45.20 2.17
314 315 6.944096 TCTTCATGACATGAGTCTTCAGAAT 58.056 36.000 17.29 0.00 45.20 2.40
315 316 6.350629 TCTTCATGACATGAGTCTTCAGAA 57.649 37.500 17.29 0.00 45.20 3.02
316 317 5.990120 TCTTCATGACATGAGTCTTCAGA 57.010 39.130 17.29 13.28 45.20 3.27
317 318 8.890124 ATAATCTTCATGACATGAGTCTTCAG 57.110 34.615 17.29 11.33 45.20 3.02
362 363 9.847224 GGATGAGTCCTTTACCATAGAAAATTA 57.153 33.333 0.00 0.00 41.60 1.40
363 364 8.336235 TGGATGAGTCCTTTACCATAGAAAATT 58.664 33.333 0.00 0.00 45.32 1.82
364 365 7.872138 TGGATGAGTCCTTTACCATAGAAAAT 58.128 34.615 0.00 0.00 45.32 1.82
365 366 7.265599 TGGATGAGTCCTTTACCATAGAAAA 57.734 36.000 0.00 0.00 45.32 2.29
366 367 6.884472 TGGATGAGTCCTTTACCATAGAAA 57.116 37.500 0.00 0.00 45.32 2.52
367 368 7.451731 AATGGATGAGTCCTTTACCATAGAA 57.548 36.000 0.00 0.00 45.32 2.10
368 369 7.451731 AAATGGATGAGTCCTTTACCATAGA 57.548 36.000 0.00 0.00 45.32 1.98
369 370 8.608844 GTAAATGGATGAGTCCTTTACCATAG 57.391 38.462 0.00 0.00 45.32 2.23
374 375 6.650120 TGAGGTAAATGGATGAGTCCTTTAC 58.350 40.000 14.40 14.40 45.32 2.01
375 376 6.884472 TGAGGTAAATGGATGAGTCCTTTA 57.116 37.500 0.00 0.00 45.32 1.85
376 377 5.779241 TGAGGTAAATGGATGAGTCCTTT 57.221 39.130 0.00 0.00 45.32 3.11
377 378 5.983333 ATGAGGTAAATGGATGAGTCCTT 57.017 39.130 0.00 0.00 45.32 3.36
378 379 5.983333 AATGAGGTAAATGGATGAGTCCT 57.017 39.130 0.00 0.00 45.32 3.85
379 380 6.831976 AGTAATGAGGTAAATGGATGAGTCC 58.168 40.000 0.00 0.00 45.31 3.85
380 381 8.738645 AAAGTAATGAGGTAAATGGATGAGTC 57.261 34.615 0.00 0.00 0.00 3.36
381 382 8.960591 CAAAAGTAATGAGGTAAATGGATGAGT 58.039 33.333 0.00 0.00 0.00 3.41
382 383 8.960591 ACAAAAGTAATGAGGTAAATGGATGAG 58.039 33.333 0.00 0.00 0.00 2.90
383 384 8.877864 ACAAAAGTAATGAGGTAAATGGATGA 57.122 30.769 0.00 0.00 0.00 2.92
384 385 9.927668 AAACAAAAGTAATGAGGTAAATGGATG 57.072 29.630 0.00 0.00 0.00 3.51
386 387 9.974980 GAAAACAAAAGTAATGAGGTAAATGGA 57.025 29.630 0.00 0.00 0.00 3.41
387 388 8.911662 CGAAAACAAAAGTAATGAGGTAAATGG 58.088 33.333 0.00 0.00 0.00 3.16
388 389 9.672086 TCGAAAACAAAAGTAATGAGGTAAATG 57.328 29.630 0.00 0.00 0.00 2.32
391 392 9.724839 CTTTCGAAAACAAAAGTAATGAGGTAA 57.275 29.630 12.41 0.00 0.00 2.85
392 393 7.858879 GCTTTCGAAAACAAAAGTAATGAGGTA 59.141 33.333 12.41 0.00 35.41 3.08
393 394 6.695713 GCTTTCGAAAACAAAAGTAATGAGGT 59.304 34.615 12.41 0.00 35.41 3.85
394 395 6.143919 GGCTTTCGAAAACAAAAGTAATGAGG 59.856 38.462 12.41 0.00 35.41 3.86
395 396 6.695278 TGGCTTTCGAAAACAAAAGTAATGAG 59.305 34.615 12.41 0.00 35.41 2.90
396 397 6.565234 TGGCTTTCGAAAACAAAAGTAATGA 58.435 32.000 12.41 0.00 35.41 2.57
397 398 6.820470 TGGCTTTCGAAAACAAAAGTAATG 57.180 33.333 12.41 0.00 35.41 1.90
398 399 8.432110 AAATGGCTTTCGAAAACAAAAGTAAT 57.568 26.923 12.41 0.00 35.41 1.89
399 400 7.835634 AAATGGCTTTCGAAAACAAAAGTAA 57.164 28.000 12.41 0.00 35.41 2.24
400 401 7.435784 GGTAAATGGCTTTCGAAAACAAAAGTA 59.564 33.333 12.41 3.66 35.41 2.24
401 402 6.256975 GGTAAATGGCTTTCGAAAACAAAAGT 59.743 34.615 12.41 4.46 35.41 2.66
402 403 6.292649 GGGTAAATGGCTTTCGAAAACAAAAG 60.293 38.462 12.41 0.00 35.93 2.27
403 404 5.524281 GGGTAAATGGCTTTCGAAAACAAAA 59.476 36.000 12.41 0.00 0.00 2.44
404 405 5.051153 GGGTAAATGGCTTTCGAAAACAAA 58.949 37.500 12.41 0.37 0.00 2.83
405 406 4.501743 GGGGTAAATGGCTTTCGAAAACAA 60.502 41.667 12.41 0.81 0.00 2.83
406 407 3.006003 GGGGTAAATGGCTTTCGAAAACA 59.994 43.478 12.41 13.82 0.00 2.83
407 408 3.006003 TGGGGTAAATGGCTTTCGAAAAC 59.994 43.478 12.41 7.43 0.00 2.43
408 409 3.231818 TGGGGTAAATGGCTTTCGAAAA 58.768 40.909 12.41 0.00 0.00 2.29
409 410 2.877866 TGGGGTAAATGGCTTTCGAAA 58.122 42.857 10.71 10.71 0.00 3.46
410 411 2.588464 TGGGGTAAATGGCTTTCGAA 57.412 45.000 0.00 0.00 0.00 3.71
411 412 2.818751 ATGGGGTAAATGGCTTTCGA 57.181 45.000 0.00 0.00 0.00 3.71
412 413 3.951680 AGTAATGGGGTAAATGGCTTTCG 59.048 43.478 0.00 0.00 0.00 3.46
413 414 5.932619 AAGTAATGGGGTAAATGGCTTTC 57.067 39.130 0.00 0.00 0.00 2.62
414 415 6.472016 CAAAAGTAATGGGGTAAATGGCTTT 58.528 36.000 0.00 0.00 0.00 3.51
415 416 5.045942 CCAAAAGTAATGGGGTAAATGGCTT 60.046 40.000 0.00 0.00 34.15 4.35
416 417 4.469586 CCAAAAGTAATGGGGTAAATGGCT 59.530 41.667 0.00 0.00 34.15 4.75
417 418 4.224147 ACCAAAAGTAATGGGGTAAATGGC 59.776 41.667 0.00 0.00 42.48 4.40
418 419 7.343316 TCATACCAAAAGTAATGGGGTAAATGG 59.657 37.037 0.00 0.00 42.48 3.16
419 420 8.299990 TCATACCAAAAGTAATGGGGTAAATG 57.700 34.615 0.00 0.00 42.48 2.32
421 422 9.992442 TTATCATACCAAAAGTAATGGGGTAAA 57.008 29.630 0.00 0.00 42.48 2.01
422 423 9.411189 GTTATCATACCAAAAGTAATGGGGTAA 57.589 33.333 0.00 0.00 42.48 2.85
423 424 8.783903 AGTTATCATACCAAAAGTAATGGGGTA 58.216 33.333 0.00 0.00 42.48 3.69
424 425 7.559897 CAGTTATCATACCAAAAGTAATGGGGT 59.440 37.037 0.00 0.00 42.48 4.95
425 426 7.470009 GCAGTTATCATACCAAAAGTAATGGGG 60.470 40.741 0.00 0.00 42.48 4.96
426 427 7.285401 AGCAGTTATCATACCAAAAGTAATGGG 59.715 37.037 0.00 0.00 42.48 4.00
427 428 8.225603 AGCAGTTATCATACCAAAAGTAATGG 57.774 34.615 0.00 0.00 43.84 3.16
430 431 9.953565 ACTTAGCAGTTATCATACCAAAAGTAA 57.046 29.630 0.00 0.00 33.70 2.24
432 433 9.953565 TTACTTAGCAGTTATCATACCAAAAGT 57.046 29.630 0.00 0.00 34.06 2.66
437 438 9.687210 CGTATTTACTTAGCAGTTATCATACCA 57.313 33.333 0.00 0.00 34.06 3.25
438 439 9.688592 ACGTATTTACTTAGCAGTTATCATACC 57.311 33.333 0.00 0.00 34.06 2.73
441 442 9.042008 CCAACGTATTTACTTAGCAGTTATCAT 57.958 33.333 0.00 0.00 34.06 2.45
442 443 8.252417 TCCAACGTATTTACTTAGCAGTTATCA 58.748 33.333 0.00 0.00 34.06 2.15
443 444 8.638685 TCCAACGTATTTACTTAGCAGTTATC 57.361 34.615 0.00 0.00 34.06 1.75
444 445 9.609346 ATTCCAACGTATTTACTTAGCAGTTAT 57.391 29.630 0.00 0.00 34.06 1.89
445 446 9.439500 AATTCCAACGTATTTACTTAGCAGTTA 57.561 29.630 0.00 0.00 34.06 2.24
446 447 7.916914 ATTCCAACGTATTTACTTAGCAGTT 57.083 32.000 0.00 0.00 34.06 3.16
447 448 7.916914 AATTCCAACGTATTTACTTAGCAGT 57.083 32.000 0.00 0.00 36.99 4.40
448 449 9.916397 CTAAATTCCAACGTATTTACTTAGCAG 57.084 33.333 0.00 0.00 0.00 4.24
449 450 8.392612 GCTAAATTCCAACGTATTTACTTAGCA 58.607 33.333 17.48 0.00 28.92 3.49
450 451 8.610035 AGCTAAATTCCAACGTATTTACTTAGC 58.390 33.333 15.82 15.82 0.00 3.09
452 453 9.656040 TGAGCTAAATTCCAACGTATTTACTTA 57.344 29.630 0.00 0.00 0.00 2.24
453 454 8.556213 TGAGCTAAATTCCAACGTATTTACTT 57.444 30.769 0.00 0.00 0.00 2.24
454 455 8.612619 CATGAGCTAAATTCCAACGTATTTACT 58.387 33.333 0.00 0.00 0.00 2.24
455 456 8.395633 ACATGAGCTAAATTCCAACGTATTTAC 58.604 33.333 0.00 0.00 0.00 2.01
456 457 8.500753 ACATGAGCTAAATTCCAACGTATTTA 57.499 30.769 0.00 0.00 0.00 1.40
457 458 7.391148 ACATGAGCTAAATTCCAACGTATTT 57.609 32.000 0.00 0.00 0.00 1.40
458 459 7.120579 TCAACATGAGCTAAATTCCAACGTATT 59.879 33.333 0.00 0.00 0.00 1.89
459 460 6.597672 TCAACATGAGCTAAATTCCAACGTAT 59.402 34.615 0.00 0.00 0.00 3.06
460 461 5.935206 TCAACATGAGCTAAATTCCAACGTA 59.065 36.000 0.00 0.00 0.00 3.57
461 462 4.759693 TCAACATGAGCTAAATTCCAACGT 59.240 37.500 0.00 0.00 0.00 3.99
462 463 5.088739 GTCAACATGAGCTAAATTCCAACG 58.911 41.667 0.00 0.00 0.00 4.10
463 464 6.012658 TGTCAACATGAGCTAAATTCCAAC 57.987 37.500 0.00 0.00 0.00 3.77
464 465 6.839124 ATGTCAACATGAGCTAAATTCCAA 57.161 33.333 0.00 0.00 34.83 3.53
478 479 8.373981 TGGTCCAAAAATAATTCATGTCAACAT 58.626 29.630 0.00 0.00 36.96 2.71
479 480 7.730084 TGGTCCAAAAATAATTCATGTCAACA 58.270 30.769 0.00 0.00 0.00 3.33
480 481 7.872483 ACTGGTCCAAAAATAATTCATGTCAAC 59.128 33.333 0.00 0.00 0.00 3.18
481 482 7.961351 ACTGGTCCAAAAATAATTCATGTCAA 58.039 30.769 0.00 0.00 0.00 3.18
482 483 7.537596 ACTGGTCCAAAAATAATTCATGTCA 57.462 32.000 0.00 0.00 0.00 3.58
492 493 9.249053 TGCAAGATAATAACTGGTCCAAAAATA 57.751 29.630 0.00 0.00 0.00 1.40
493 494 8.133024 TGCAAGATAATAACTGGTCCAAAAAT 57.867 30.769 0.00 0.00 0.00 1.82
494 495 7.531857 TGCAAGATAATAACTGGTCCAAAAA 57.468 32.000 0.00 0.00 0.00 1.94
495 496 7.716799 ATGCAAGATAATAACTGGTCCAAAA 57.283 32.000 0.00 0.00 0.00 2.44
496 497 8.815565 TTATGCAAGATAATAACTGGTCCAAA 57.184 30.769 0.00 0.00 0.00 3.28
497 498 8.995027 ATTATGCAAGATAATAACTGGTCCAA 57.005 30.769 0.00 0.00 0.00 3.53
498 499 8.217111 TGATTATGCAAGATAATAACTGGTCCA 58.783 33.333 0.00 0.00 0.00 4.02
499 500 8.621532 TGATTATGCAAGATAATAACTGGTCC 57.378 34.615 0.00 0.00 0.00 4.46
520 521 9.042008 GCTGCATCAGATTGATTAAATTTGATT 57.958 29.630 0.00 0.00 43.91 2.57
521 522 8.201464 TGCTGCATCAGATTGATTAAATTTGAT 58.799 29.630 0.00 0.00 46.05 2.57
522 523 7.490079 GTGCTGCATCAGATTGATTAAATTTGA 59.510 33.333 5.27 0.00 41.97 2.69
523 524 7.254319 GGTGCTGCATCAGATTGATTAAATTTG 60.254 37.037 8.27 0.00 34.28 2.32
524 525 6.759827 GGTGCTGCATCAGATTGATTAAATTT 59.240 34.615 8.27 0.00 34.28 1.82
525 526 6.127281 TGGTGCTGCATCAGATTGATTAAATT 60.127 34.615 12.35 0.00 34.28 1.82
526 527 5.361571 TGGTGCTGCATCAGATTGATTAAAT 59.638 36.000 12.35 0.00 34.28 1.40
527 528 4.705991 TGGTGCTGCATCAGATTGATTAAA 59.294 37.500 12.35 0.00 34.28 1.52
528 529 4.096833 GTGGTGCTGCATCAGATTGATTAA 59.903 41.667 17.22 0.00 34.28 1.40
529 530 3.628942 GTGGTGCTGCATCAGATTGATTA 59.371 43.478 17.22 0.00 34.28 1.75
530 531 2.426024 GTGGTGCTGCATCAGATTGATT 59.574 45.455 17.22 0.00 34.28 2.57
531 532 2.022195 GTGGTGCTGCATCAGATTGAT 58.978 47.619 17.22 0.00 37.65 2.57
532 533 1.003928 AGTGGTGCTGCATCAGATTGA 59.996 47.619 17.22 0.00 32.44 2.57
533 534 1.460504 AGTGGTGCTGCATCAGATTG 58.539 50.000 17.22 0.00 32.44 2.67
534 535 2.089980 GAAGTGGTGCTGCATCAGATT 58.910 47.619 17.22 14.05 32.44 2.40
535 536 1.003928 TGAAGTGGTGCTGCATCAGAT 59.996 47.619 17.22 8.01 32.44 2.90
536 537 0.397564 TGAAGTGGTGCTGCATCAGA 59.602 50.000 17.22 0.00 32.44 3.27
537 538 1.460504 ATGAAGTGGTGCTGCATCAG 58.539 50.000 17.22 0.00 39.24 2.90
538 539 1.913778 AATGAAGTGGTGCTGCATCA 58.086 45.000 12.35 12.35 42.63 3.07
539 540 4.168760 GTTTAATGAAGTGGTGCTGCATC 58.831 43.478 5.27 5.56 42.63 3.91
540 541 3.056607 GGTTTAATGAAGTGGTGCTGCAT 60.057 43.478 5.27 0.00 45.35 3.96
541 542 2.295909 GGTTTAATGAAGTGGTGCTGCA 59.704 45.455 0.00 0.00 37.12 4.41
542 543 2.558359 AGGTTTAATGAAGTGGTGCTGC 59.442 45.455 0.00 0.00 0.00 5.25
543 544 3.820467 TCAGGTTTAATGAAGTGGTGCTG 59.180 43.478 0.00 0.00 0.00 4.41
544 545 4.098914 TCAGGTTTAATGAAGTGGTGCT 57.901 40.909 0.00 0.00 0.00 4.40
545 546 5.048083 TGAATCAGGTTTAATGAAGTGGTGC 60.048 40.000 0.00 0.00 0.00 5.01
546 547 6.573664 TGAATCAGGTTTAATGAAGTGGTG 57.426 37.500 0.00 0.00 0.00 4.17
547 548 7.781324 AATGAATCAGGTTTAATGAAGTGGT 57.219 32.000 0.00 0.00 0.00 4.16
558 559 9.911788 ACATCACTCTAATAATGAATCAGGTTT 57.088 29.630 0.00 0.00 0.00 3.27
559 560 9.911788 AACATCACTCTAATAATGAATCAGGTT 57.088 29.630 0.00 0.00 0.00 3.50
560 561 9.911788 AAACATCACTCTAATAATGAATCAGGT 57.088 29.630 0.00 0.00 0.00 4.00
571 572 9.056005 GGCATATCAACAAACATCACTCTAATA 57.944 33.333 0.00 0.00 0.00 0.98
572 573 7.776969 AGGCATATCAACAAACATCACTCTAAT 59.223 33.333 0.00 0.00 0.00 1.73
573 574 7.112122 AGGCATATCAACAAACATCACTCTAA 58.888 34.615 0.00 0.00 0.00 2.10
574 575 6.653020 AGGCATATCAACAAACATCACTCTA 58.347 36.000 0.00 0.00 0.00 2.43
575 576 5.503927 AGGCATATCAACAAACATCACTCT 58.496 37.500 0.00 0.00 0.00 3.24
576 577 5.824904 AGGCATATCAACAAACATCACTC 57.175 39.130 0.00 0.00 0.00 3.51
577 578 7.557358 TCATAAGGCATATCAACAAACATCACT 59.443 33.333 0.00 0.00 0.00 3.41
578 579 7.706159 TCATAAGGCATATCAACAAACATCAC 58.294 34.615 0.00 0.00 0.00 3.06
579 580 7.878547 TCATAAGGCATATCAACAAACATCA 57.121 32.000 0.00 0.00 0.00 3.07
639 640 4.683334 GAGCCCGTGCGTTGCAAC 62.683 66.667 19.89 19.89 41.47 4.17
640 641 4.927782 AGAGCCCGTGCGTTGCAA 62.928 61.111 0.00 0.00 41.47 4.08
641 642 4.927782 AAGAGCCCGTGCGTTGCA 62.928 61.111 6.22 0.00 44.33 4.08
642 643 3.194272 AAAAGAGCCCGTGCGTTGC 62.194 57.895 0.00 0.00 44.33 4.17
643 644 1.082104 GAAAAGAGCCCGTGCGTTG 60.082 57.895 0.00 0.00 44.33 4.10
644 645 2.258726 GGAAAAGAGCCCGTGCGTT 61.259 57.895 0.00 0.00 44.33 4.84
645 646 1.823169 TAGGAAAAGAGCCCGTGCGT 61.823 55.000 0.00 0.00 44.33 5.24
646 647 1.079405 TAGGAAAAGAGCCCGTGCG 60.079 57.895 0.00 0.00 44.33 5.34
647 648 0.036294 ACTAGGAAAAGAGCCCGTGC 60.036 55.000 0.00 0.00 37.95 5.34
648 649 2.418334 GGTACTAGGAAAAGAGCCCGTG 60.418 54.545 0.00 0.00 0.00 4.94
649 650 1.829849 GGTACTAGGAAAAGAGCCCGT 59.170 52.381 0.00 0.00 0.00 5.28
650 651 2.108970 AGGTACTAGGAAAAGAGCCCG 58.891 52.381 0.00 0.00 36.02 6.13
651 652 3.387374 GGTAGGTACTAGGAAAAGAGCCC 59.613 52.174 0.00 0.00 44.14 5.19
652 653 4.288398 AGGTAGGTACTAGGAAAAGAGCC 58.712 47.826 0.00 0.00 44.14 4.70
653 654 7.944000 AGTATAGGTAGGTACTAGGAAAAGAGC 59.056 40.741 0.00 0.00 44.14 4.09
667 668 8.169393 GGGAGTCTGTAATTAGTATAGGTAGGT 58.831 40.741 0.00 0.00 0.00 3.08
668 669 8.168725 TGGGAGTCTGTAATTAGTATAGGTAGG 58.831 40.741 0.00 0.00 0.00 3.18
669 670 9.584008 TTGGGAGTCTGTAATTAGTATAGGTAG 57.416 37.037 0.00 0.00 0.00 3.18
751 752 7.982371 AATTTTAGTCGAATCTACACCGTAG 57.018 36.000 0.00 0.00 0.00 3.51
998 2174 1.537202 GCTGAAGAAAAGGCGACATGT 59.463 47.619 0.00 0.00 0.00 3.21
1144 2327 2.851071 CGGGAAAAAGGCACGGCAA 61.851 57.895 0.00 0.00 0.00 4.52
1149 2332 0.596577 GAAGGACGGGAAAAAGGCAC 59.403 55.000 0.00 0.00 0.00 5.01
1178 2361 1.898472 CAAGGCAGAGAGAGGTGAGAA 59.102 52.381 0.00 0.00 0.00 2.87
1251 2434 4.530857 CGGAGGGCGTGGATCCAC 62.531 72.222 31.59 31.59 43.01 4.02
1648 3343 5.185635 ACACATTACATCAAACATGGAAGGG 59.814 40.000 0.00 0.00 28.68 3.95
1818 3516 8.693542 ATTGCAGAAATAGCACTAACATTTTC 57.306 30.769 0.00 0.00 42.54 2.29
1971 3678 6.628919 TGAATCATGATTTCCTAGTGCATG 57.371 37.500 21.57 0.00 38.09 4.06
2221 4038 6.097356 TGACTATAACTGACACTAAAAGCCG 58.903 40.000 0.00 0.00 0.00 5.52
2232 4049 4.406003 ACCCAGTCCATGACTATAACTGAC 59.594 45.833 0.00 0.00 41.37 3.51
2325 4144 7.504911 AGCTGATGAATGCTTTTTCCATAGTAT 59.495 33.333 0.00 0.00 35.86 2.12
2368 4187 5.452302 GTGCTTATTCGCATTGTCATACAAC 59.548 40.000 0.00 0.00 41.40 3.32
2402 4221 5.482908 AGCTTGGAAGTACTATGACTTGTG 58.517 41.667 0.00 0.00 39.79 3.33
3271 5147 9.743057 GAAAGCTATAGATAGATGATAATGCGT 57.257 33.333 3.21 0.00 32.05 5.24
3333 5213 9.950680 CACAAAGATTGTCAATTTTGTAGTACT 57.049 29.630 23.44 0.00 43.23 2.73
3376 5256 4.205587 CTCCCTTCTCCAATTCATCTTGG 58.794 47.826 0.00 0.00 45.91 3.61
3508 5398 1.079503 GCCAGAGCAGTTTTAGACCG 58.920 55.000 0.00 0.00 39.53 4.79
3649 5540 5.103940 ACAACATAGATTGACCCCAATAGCT 60.104 40.000 0.00 0.00 42.66 3.32
3795 7759 6.712095 TCAACAGCCATGGATGTATTAAGATC 59.288 38.462 34.38 2.37 44.50 2.75
4028 7994 4.070581 AGATCAAAGCAAAACATCGTCG 57.929 40.909 0.00 0.00 0.00 5.12
4319 8368 2.218603 AGTAGGTGACGCCAAAACAAG 58.781 47.619 7.99 0.00 40.61 3.16
4401 8451 3.670627 CGAGGGTTGCATTAAACTTCAGC 60.671 47.826 0.00 0.00 0.00 4.26
4476 8570 5.876460 GGCCAATCTAGCACAATGAATTTTT 59.124 36.000 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.