Multiple sequence alignment - TraesCS3B01G200600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G200600 chr3B 100.000 2541 0 0 1 2541 229161253 229163793 0.000000e+00 4693
1 TraesCS3B01G200600 chr3D 90.885 1865 118 21 1 1842 157754548 157756383 0.000000e+00 2455
2 TraesCS3B01G200600 chr3D 85.314 606 48 21 1968 2541 157756436 157757032 2.820000e-164 588
3 TraesCS3B01G200600 chr6D 89.313 1703 131 20 205 1882 438529634 438527958 0.000000e+00 2089
4 TraesCS3B01G200600 chr6D 87.315 1285 130 19 199 1472 438526685 438527947 0.000000e+00 1439
5 TraesCS3B01G200600 chr6D 96.429 84 3 0 29 112 438529713 438529630 3.410000e-29 139
6 TraesCS3B01G200600 chr6D 95.181 83 4 0 29 111 438526612 438526694 5.700000e-27 132
7 TraesCS3B01G200600 chr3A 92.659 1226 75 7 711 1934 170384412 170383200 0.000000e+00 1751
8 TraesCS3B01G200600 chr3A 91.120 732 33 16 1 709 170385218 170384496 0.000000e+00 963
9 TraesCS3B01G200600 chr3A 89.825 570 29 14 1984 2541 170304889 170304337 0.000000e+00 704
10 TraesCS3B01G200600 chr3A 89.825 570 29 14 1984 2541 170356034 170355482 0.000000e+00 704
11 TraesCS3B01G200600 chr3A 89.825 570 29 14 1984 2541 170383128 170382576 0.000000e+00 704
12 TraesCS3B01G200600 chr3A 89.597 298 21 2 1637 1934 170305248 170304961 1.110000e-98 370
13 TraesCS3B01G200600 chr3A 89.597 298 21 2 1637 1934 170356393 170356106 1.110000e-98 370
14 TraesCS3B01G200600 chrUn 93.420 927 56 5 711 1635 336469380 336470303 0.000000e+00 1369
15 TraesCS3B01G200600 chrUn 91.120 732 33 16 1 709 336468574 336469296 0.000000e+00 963
16 TraesCS3B01G200600 chrUn 90.847 732 35 16 1 709 397151249 397151971 0.000000e+00 952
17 TraesCS3B01G200600 chrUn 96.235 425 14 2 711 1133 397152055 397152479 0.000000e+00 695
18 TraesCS3B01G200600 chrUn 95.065 385 17 2 1 383 392970152 392970536 2.800000e-169 604


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G200600 chr3B 229161253 229163793 2540 False 4693.000000 4693 100.000000 1 2541 1 chr3B.!!$F1 2540
1 TraesCS3B01G200600 chr3D 157754548 157757032 2484 False 1521.500000 2455 88.099500 1 2541 2 chr3D.!!$F1 2540
2 TraesCS3B01G200600 chr6D 438527958 438529713 1755 True 1114.000000 2089 92.871000 29 1882 2 chr6D.!!$R1 1853
3 TraesCS3B01G200600 chr6D 438526612 438527947 1335 False 785.500000 1439 91.248000 29 1472 2 chr6D.!!$F1 1443
4 TraesCS3B01G200600 chr3A 170382576 170385218 2642 True 1139.333333 1751 91.201333 1 2541 3 chr3A.!!$R3 2540
5 TraesCS3B01G200600 chr3A 170304337 170305248 911 True 537.000000 704 89.711000 1637 2541 2 chr3A.!!$R1 904
6 TraesCS3B01G200600 chr3A 170355482 170356393 911 True 537.000000 704 89.711000 1637 2541 2 chr3A.!!$R2 904
7 TraesCS3B01G200600 chrUn 336468574 336470303 1729 False 1166.000000 1369 92.270000 1 1635 2 chrUn.!!$F2 1634
8 TraesCS3B01G200600 chrUn 397151249 397152479 1230 False 823.500000 952 93.541000 1 1133 2 chrUn.!!$F3 1132

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
634 657 2.146342 GGAGCATGGACGTTGGATATG 58.854 52.381 0.0 0.0 0.0 1.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2138 2334 0.179119 CCGATACCAACACCGAGTCC 60.179 60.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 5.009631 TGGAGAATTGTGGGTTGAACATAG 58.990 41.667 0.00 0.00 0.00 2.23
330 333 9.950680 CTACAATTTGACATTGTTCTACAACTT 57.049 29.630 1.98 0.00 41.40 2.66
516 539 9.959721 ATACTTGGCAAGAAGTTTATTCTCTAA 57.040 29.630 32.50 0.00 37.38 2.10
518 541 9.301897 ACTTGGCAAGAAGTTTATTCTCTAAAT 57.698 29.630 32.50 1.32 31.92 1.40
522 545 8.864024 GGCAAGAAGTTTATTCTCTAAATTTGC 58.136 33.333 0.00 0.00 0.00 3.68
523 546 8.578769 GCAAGAAGTTTATTCTCTAAATTTGCG 58.421 33.333 0.00 0.00 0.00 4.85
525 548 7.251281 AGAAGTTTATTCTCTAAATTTGCGCC 58.749 34.615 4.18 0.00 0.00 6.53
527 550 5.652452 AGTTTATTCTCTAAATTTGCGCCCT 59.348 36.000 4.18 0.00 0.00 5.19
529 552 6.524101 TTATTCTCTAAATTTGCGCCCTTT 57.476 33.333 4.18 4.49 0.00 3.11
530 553 4.434713 TTCTCTAAATTTGCGCCCTTTC 57.565 40.909 4.18 0.00 0.00 2.62
532 555 4.016444 TCTCTAAATTTGCGCCCTTTCAT 58.984 39.130 4.18 0.00 0.00 2.57
533 556 4.107622 CTCTAAATTTGCGCCCTTTCATG 58.892 43.478 4.18 0.00 0.00 3.07
536 559 2.368655 ATTTGCGCCCTTTCATGAAC 57.631 45.000 7.89 0.00 0.00 3.18
571 594 4.396357 TCCTTTGAAGGCCAAAATAGGA 57.604 40.909 5.01 8.74 46.06 2.94
607 630 5.049405 CACACAATTCTAGTTCACCCTTCAC 60.049 44.000 0.00 0.00 0.00 3.18
612 635 5.888982 TTCTAGTTCACCCTTCACTCTTT 57.111 39.130 0.00 0.00 0.00 2.52
634 657 2.146342 GGAGCATGGACGTTGGATATG 58.854 52.381 0.00 0.00 0.00 1.78
635 658 2.485479 GGAGCATGGACGTTGGATATGT 60.485 50.000 0.00 0.00 0.00 2.29
709 733 8.615878 TCTCTTAGTTTATGTGCTAAGCAAAA 57.384 30.769 6.48 0.00 41.47 2.44
722 828 7.390440 TGTGCTAAGCAAAATAGATGTGTACTT 59.610 33.333 0.00 0.00 41.47 2.24
845 952 7.167468 CGCCAATATTATTTGTTACTTTCTGCC 59.833 37.037 0.00 0.00 0.00 4.85
885 992 4.653341 TGAAATTGCTTGGGAAGGAAAAGA 59.347 37.500 0.00 0.00 42.24 2.52
890 997 8.608185 AATTGCTTGGGAAGGAAAAGATATTA 57.392 30.769 0.00 0.00 42.24 0.98
1008 1117 1.238439 AAAGGGTTGTGATGTCGCTG 58.762 50.000 0.00 0.00 0.00 5.18
1153 1262 2.092646 TGCCGCCTTCACTATGGTAATT 60.093 45.455 0.00 0.00 0.00 1.40
1160 1269 6.462487 CGCCTTCACTATGGTAATTCTTCCTA 60.462 42.308 0.00 0.00 0.00 2.94
1162 1271 7.419172 GCCTTCACTATGGTAATTCTTCCTAGT 60.419 40.741 0.00 0.00 0.00 2.57
1207 1316 9.486497 TTCAATATCTGCTCTATTCATCTTCAC 57.514 33.333 0.00 0.00 0.00 3.18
1208 1317 8.093307 TCAATATCTGCTCTATTCATCTTCACC 58.907 37.037 0.00 0.00 0.00 4.02
1214 1323 4.926238 GCTCTATTCATCTTCACCCGTATG 59.074 45.833 0.00 0.00 0.00 2.39
1232 1341 8.842280 ACCCGTATGTTTGTTAATATTACCATG 58.158 33.333 0.00 0.00 0.00 3.66
1332 1441 1.527380 GCCTTTCGGGTGTTGGTCA 60.527 57.895 0.00 0.00 37.43 4.02
1345 1454 3.670055 GTGTTGGTCATTCGAAGCAATTG 59.330 43.478 3.35 0.00 36.60 2.32
1549 1659 0.465097 AGCCTGCATAGTGTCATGGC 60.465 55.000 0.00 0.00 39.19 4.40
1662 1772 2.440409 CCCTGAAATTGGACACCTCTG 58.560 52.381 0.00 0.00 0.00 3.35
1732 1842 5.409214 GCTTTTTGCATCAAATTTGGAGCTA 59.591 36.000 25.36 19.38 42.31 3.32
1738 1848 4.884164 GCATCAAATTTGGAGCTAGTACCT 59.116 41.667 17.90 0.00 0.00 3.08
1795 1905 4.711846 AGTGAGGTAGTGATGTATTGCTGA 59.288 41.667 0.00 0.00 0.00 4.26
1863 2005 6.874134 GGCTTCCGTGAGATACATAAACATAT 59.126 38.462 0.00 0.00 0.00 1.78
1885 2027 2.093181 TCCGATTTGACCCGATGATGTT 60.093 45.455 0.00 0.00 0.00 2.71
1886 2028 2.682856 CCGATTTGACCCGATGATGTTT 59.317 45.455 0.00 0.00 0.00 2.83
1887 2029 3.874543 CCGATTTGACCCGATGATGTTTA 59.125 43.478 0.00 0.00 0.00 2.01
1906 2048 4.884668 TTAGTAATAATAGGCGCTGGCT 57.115 40.909 7.64 9.33 42.39 4.75
1908 2050 3.665190 AGTAATAATAGGCGCTGGCTTC 58.335 45.455 7.64 0.00 39.70 3.86
1930 2072 4.141344 TCCAGTGTTTAAGCCTTGGTTACT 60.141 41.667 8.39 0.00 0.00 2.24
1931 2073 4.023193 CCAGTGTTTAAGCCTTGGTTACTG 60.023 45.833 0.00 0.00 30.52 2.74
1932 2074 3.568430 AGTGTTTAAGCCTTGGTTACTGC 59.432 43.478 0.00 0.00 0.00 4.40
1933 2075 3.568430 GTGTTTAAGCCTTGGTTACTGCT 59.432 43.478 0.00 0.00 35.08 4.24
1934 2076 3.818773 TGTTTAAGCCTTGGTTACTGCTC 59.181 43.478 0.00 0.00 32.62 4.26
1935 2077 2.781681 TAAGCCTTGGTTACTGCTCC 57.218 50.000 0.00 0.00 32.62 4.70
1936 2078 0.038310 AAGCCTTGGTTACTGCTCCC 59.962 55.000 0.00 0.00 32.62 4.30
1937 2079 0.842467 AGCCTTGGTTACTGCTCCCT 60.842 55.000 0.00 0.00 0.00 4.20
1938 2080 0.393132 GCCTTGGTTACTGCTCCCTC 60.393 60.000 0.00 0.00 0.00 4.30
1939 2081 1.280457 CCTTGGTTACTGCTCCCTCT 58.720 55.000 0.00 0.00 0.00 3.69
1940 2082 1.208293 CCTTGGTTACTGCTCCCTCTC 59.792 57.143 0.00 0.00 0.00 3.20
1941 2083 0.895530 TTGGTTACTGCTCCCTCTCG 59.104 55.000 0.00 0.00 0.00 4.04
1942 2084 0.251653 TGGTTACTGCTCCCTCTCGT 60.252 55.000 0.00 0.00 0.00 4.18
1943 2085 0.896226 GGTTACTGCTCCCTCTCGTT 59.104 55.000 0.00 0.00 0.00 3.85
1944 2086 1.275573 GGTTACTGCTCCCTCTCGTTT 59.724 52.381 0.00 0.00 0.00 3.60
1945 2087 2.338500 GTTACTGCTCCCTCTCGTTTG 58.662 52.381 0.00 0.00 0.00 2.93
1946 2088 0.895530 TACTGCTCCCTCTCGTTTGG 59.104 55.000 0.00 0.00 0.00 3.28
1947 2089 0.832135 ACTGCTCCCTCTCGTTTGGA 60.832 55.000 0.00 0.00 0.00 3.53
1948 2090 0.108424 CTGCTCCCTCTCGTTTGGAG 60.108 60.000 0.00 0.00 46.87 3.86
1951 2093 1.549170 GCTCCCTCTCGTTTGGAGTAA 59.451 52.381 6.64 0.00 46.05 2.24
1964 2106 7.833786 TCGTTTGGAGTAATGTACAGTATCTT 58.166 34.615 6.28 0.00 0.00 2.40
1965 2107 8.959548 TCGTTTGGAGTAATGTACAGTATCTTA 58.040 33.333 6.28 0.00 0.00 2.10
1966 2108 9.234384 CGTTTGGAGTAATGTACAGTATCTTAG 57.766 37.037 6.28 0.00 0.00 2.18
2032 2222 2.766263 ACAAGGATCCGAGTTGATGCTA 59.234 45.455 16.81 0.00 41.87 3.49
2138 2334 8.818057 CGGGATATGTTTTAAGAACTAGAAGTG 58.182 37.037 0.00 0.00 0.00 3.16
2165 2368 2.482721 GGTGTTGGTATCGGACTTTGTG 59.517 50.000 0.00 0.00 0.00 3.33
2218 2424 4.633126 ACGTCGTACTATAGTTGAGAAGCA 59.367 41.667 11.40 0.00 0.00 3.91
2284 2505 2.158330 CGACGTCGCAATGCAGCTA 61.158 57.895 26.59 0.00 0.00 3.32
2499 2720 4.899239 GCCGCCTGAGATCACGGG 62.899 72.222 13.31 13.31 45.72 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 4.939509 ATACATACACTGTTTTGGTCGC 57.060 40.909 0.00 0.00 39.39 5.19
240 241 6.334202 TGTCCTGGTCAAAACACAAATTAAC 58.666 36.000 0.00 0.00 0.00 2.01
330 333 5.640158 ATACCGTGATAGGGAAAATTGGA 57.360 39.130 0.00 0.00 35.02 3.53
516 539 2.036992 TGTTCATGAAAGGGCGCAAATT 59.963 40.909 10.35 0.00 0.00 1.82
518 541 1.035923 TGTTCATGAAAGGGCGCAAA 58.964 45.000 10.35 0.00 0.00 3.68
520 543 0.597568 CTTGTTCATGAAAGGGCGCA 59.402 50.000 10.35 0.00 0.00 6.09
522 545 2.554032 AGTTCTTGTTCATGAAAGGGCG 59.446 45.455 10.35 0.00 0.00 6.13
523 546 4.550422 GAAGTTCTTGTTCATGAAAGGGC 58.450 43.478 10.35 0.00 0.00 5.19
525 548 5.300286 AGTGGAAGTTCTTGTTCATGAAAGG 59.700 40.000 10.35 3.61 0.00 3.11
527 550 6.183360 GGAAGTGGAAGTTCTTGTTCATGAAA 60.183 38.462 10.35 0.00 45.58 2.69
529 552 4.821805 GGAAGTGGAAGTTCTTGTTCATGA 59.178 41.667 2.25 0.00 45.58 3.07
530 553 4.823989 AGGAAGTGGAAGTTCTTGTTCATG 59.176 41.667 2.25 0.00 45.58 3.07
532 555 4.503714 AGGAAGTGGAAGTTCTTGTTCA 57.496 40.909 2.25 0.00 45.58 3.18
533 556 5.357032 TCAAAGGAAGTGGAAGTTCTTGTTC 59.643 40.000 2.25 3.43 45.58 3.18
536 559 5.825507 CTTCAAAGGAAGTGGAAGTTCTTG 58.174 41.667 2.25 0.00 45.58 3.02
569 592 4.911514 ATTGTGTGTTACCACTGTTTCC 57.088 40.909 0.00 0.00 42.34 3.13
571 594 6.826741 ACTAGAATTGTGTGTTACCACTGTTT 59.173 34.615 0.00 0.00 42.34 2.83
607 630 1.813513 ACGTCCATGCTCCAAAAGAG 58.186 50.000 0.00 0.00 46.29 2.85
612 635 0.327924 ATCCAACGTCCATGCTCCAA 59.672 50.000 0.00 0.00 0.00 3.53
634 657 8.823818 AGATTTACAGTAACACACTACAAACAC 58.176 33.333 0.00 0.00 34.98 3.32
635 658 8.951787 AGATTTACAGTAACACACTACAAACA 57.048 30.769 0.00 0.00 34.98 2.83
914 1021 2.103263 AGTTCGGACTTCAGAGCACTTT 59.897 45.455 0.00 0.00 29.87 2.66
1008 1117 1.227380 CCATCCCAGTAGCTGTCGC 60.227 63.158 0.00 0.00 0.00 5.19
1153 1262 7.509546 GGAAAATATGTGGATGACTAGGAAGA 58.490 38.462 0.00 0.00 0.00 2.87
1160 1269 5.943416 TGAAACGGAAAATATGTGGATGACT 59.057 36.000 0.00 0.00 0.00 3.41
1162 1271 6.825944 TTGAAACGGAAAATATGTGGATGA 57.174 33.333 0.00 0.00 0.00 2.92
1205 1314 8.211116 TGGTAATATTAACAAACATACGGGTG 57.789 34.615 10.85 0.00 0.00 4.61
1207 1316 9.058174 TCATGGTAATATTAACAAACATACGGG 57.942 33.333 16.89 0.33 33.45 5.28
1257 1366 8.123639 ACACTCGCACTAATATATGGAATAGT 57.876 34.615 0.00 0.00 28.50 2.12
1258 1367 9.723447 CTACACTCGCACTAATATATGGAATAG 57.277 37.037 0.00 0.00 28.50 1.73
1259 1368 9.239551 ACTACACTCGCACTAATATATGGAATA 57.760 33.333 0.00 0.00 0.00 1.75
1260 1369 8.123639 ACTACACTCGCACTAATATATGGAAT 57.876 34.615 0.00 0.00 0.00 3.01
1261 1370 7.520451 ACTACACTCGCACTAATATATGGAA 57.480 36.000 0.00 0.00 0.00 3.53
1332 1441 6.980397 ACTTTCAGTTTTCAATTGCTTCGAAT 59.020 30.769 0.00 0.00 0.00 3.34
1345 1454 7.702348 AGTGTCAGCAAAATACTTTCAGTTTTC 59.298 33.333 0.00 0.00 0.00 2.29
1369 1478 6.443849 TCCTTGGACCTAGATAATGAAACAGT 59.556 38.462 4.32 0.00 0.00 3.55
1732 1842 6.591001 ACCAAATTTGATGCAAAAAGGTACT 58.409 32.000 19.86 0.00 36.90 2.73
1738 1848 5.355350 ACGGAAACCAAATTTGATGCAAAAA 59.645 32.000 19.86 0.00 36.90 1.94
1863 2005 2.093181 ACATCATCGGGTCAAATCGGAA 60.093 45.455 0.00 0.00 0.00 4.30
1885 2027 4.884668 AGCCAGCGCCTATTATTACTAA 57.115 40.909 2.29 0.00 34.57 2.24
1886 2028 4.322499 GGAAGCCAGCGCCTATTATTACTA 60.322 45.833 2.29 0.00 34.57 1.82
1887 2029 3.557264 GGAAGCCAGCGCCTATTATTACT 60.557 47.826 2.29 0.00 34.57 2.24
1906 2048 3.306472 ACCAAGGCTTAAACACTGGAA 57.694 42.857 0.00 0.00 0.00 3.53
1908 2050 4.023193 CAGTAACCAAGGCTTAAACACTGG 60.023 45.833 17.06 9.57 0.00 4.00
1930 2072 1.975327 CTCCAAACGAGAGGGAGCA 59.025 57.895 0.00 0.00 41.53 4.26
1931 2073 4.921834 CTCCAAACGAGAGGGAGC 57.078 61.111 0.00 0.00 41.53 4.70
1933 2075 3.170717 ACATTACTCCAAACGAGAGGGA 58.829 45.455 0.00 0.00 41.63 4.20
1934 2076 3.611766 ACATTACTCCAAACGAGAGGG 57.388 47.619 0.00 0.00 41.63 4.30
1935 2077 5.068234 TGTACATTACTCCAAACGAGAGG 57.932 43.478 0.00 0.00 41.63 3.69
1936 2078 5.710984 ACTGTACATTACTCCAAACGAGAG 58.289 41.667 0.00 0.00 41.63 3.20
1937 2079 5.717078 ACTGTACATTACTCCAAACGAGA 57.283 39.130 0.00 0.00 41.63 4.04
1938 2080 7.481642 AGATACTGTACATTACTCCAAACGAG 58.518 38.462 0.00 0.00 44.95 4.18
1939 2081 7.400599 AGATACTGTACATTACTCCAAACGA 57.599 36.000 0.00 0.00 0.00 3.85
1940 2082 9.234384 CTAAGATACTGTACATTACTCCAAACG 57.766 37.037 0.00 0.00 0.00 3.60
1964 2106 4.832248 CCTTCAGCAGTTGGACAATACTA 58.168 43.478 0.00 0.00 0.00 1.82
1965 2107 3.679389 CCTTCAGCAGTTGGACAATACT 58.321 45.455 0.00 0.00 0.00 2.12
1966 2108 2.162408 GCCTTCAGCAGTTGGACAATAC 59.838 50.000 0.00 0.00 42.97 1.89
2138 2334 0.179119 CCGATACCAACACCGAGTCC 60.179 60.000 0.00 0.00 0.00 3.85
2165 2368 9.239002 GACGATGGAATATATATGTAGACTTGC 57.761 37.037 0.00 0.00 0.00 4.01
2203 2409 8.659925 AGATTTGATGTGCTTCTCAACTATAG 57.340 34.615 0.00 0.00 31.41 1.31
2205 2411 7.934855 AAGATTTGATGTGCTTCTCAACTAT 57.065 32.000 0.00 0.00 31.41 2.12
2206 2412 7.094634 GGAAAGATTTGATGTGCTTCTCAACTA 60.095 37.037 0.00 0.00 31.41 2.24
2207 2413 6.294397 GGAAAGATTTGATGTGCTTCTCAACT 60.294 38.462 0.00 0.00 31.41 3.16
2211 2417 5.893897 AGGAAAGATTTGATGTGCTTCTC 57.106 39.130 0.00 0.00 0.00 2.87
2218 2424 5.691754 GCGAAACAAAGGAAAGATTTGATGT 59.308 36.000 5.50 0.00 39.50 3.06
2284 2505 2.429058 CAGCAGTCCCACAGCACT 59.571 61.111 0.00 0.00 32.62 4.40
2336 2557 4.554363 CTCCTCGTAGTGGCCGCG 62.554 72.222 11.42 0.00 41.61 6.46
2422 2643 1.447643 CTCCCATTGGTCTAGCCCG 59.552 63.158 1.20 0.00 36.04 6.13
2423 2644 0.694444 TCCTCCCATTGGTCTAGCCC 60.694 60.000 1.20 0.00 36.04 5.19
2424 2645 0.761802 CTCCTCCCATTGGTCTAGCC 59.238 60.000 1.20 0.00 37.90 3.93
2425 2646 0.761802 CCTCCTCCCATTGGTCTAGC 59.238 60.000 1.20 0.00 0.00 3.42
2426 2647 1.428869 CCCTCCTCCCATTGGTCTAG 58.571 60.000 1.20 0.00 0.00 2.43
2427 2648 0.694444 GCCCTCCTCCCATTGGTCTA 60.694 60.000 1.20 0.00 0.00 2.59
2428 2649 2.003548 GCCCTCCTCCCATTGGTCT 61.004 63.158 1.20 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.