Multiple sequence alignment - TraesCS3B01G200500
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G200500
chr3B
100.000
3194
0
0
1
3194
229009988
229006795
0.000000e+00
5899.0
1
TraesCS3B01G200500
chr3B
84.138
145
14
3
3050
3194
228983687
228983552
7.190000e-27
132.0
2
TraesCS3B01G200500
chr3D
90.578
1677
76
31
992
2621
157752722
157751081
0.000000e+00
2146.0
3
TraesCS3B01G200500
chr3D
93.808
759
42
5
1
756
556835628
556836384
0.000000e+00
1136.0
4
TraesCS3B01G200500
chr3D
87.523
545
19
12
2678
3194
157751077
157750554
4.590000e-163
584.0
5
TraesCS3B01G200500
chr3A
90.167
1556
80
32
993
2501
170388401
170389930
0.000000e+00
1958.0
6
TraesCS3B01G200500
chr3A
89.394
594
31
17
2611
3194
170389974
170390545
0.000000e+00
719.0
7
TraesCS3B01G200500
chr3A
88.493
365
21
15
2834
3194
170310915
170310568
3.810000e-114
422.0
8
TraesCS3B01G200500
chr3A
98.198
222
4
0
1196
1417
170310315
170310536
3.860000e-104
388.0
9
TraesCS3B01G200500
chr3A
83.562
146
19
5
3050
3194
170485820
170485961
7.190000e-27
132.0
10
TraesCS3B01G200500
chr3A
97.917
48
1
0
2526
2573
170389927
170389974
2.040000e-12
84.2
11
TraesCS3B01G200500
chr6D
89.199
1324
65
25
1029
2336
438531644
438532905
0.000000e+00
1581.0
12
TraesCS3B01G200500
chr6D
90.387
1009
61
15
1029
2019
438524670
438523680
0.000000e+00
1293.0
13
TraesCS3B01G200500
chr6D
88.252
698
14
16
2526
3194
438519699
438519041
0.000000e+00
773.0
14
TraesCS3B01G200500
chr6D
93.542
480
21
2
2054
2526
438523676
438523200
0.000000e+00
706.0
15
TraesCS3B01G200500
chr7D
95.936
689
26
2
1
687
250626086
250625398
0.000000e+00
1116.0
16
TraesCS3B01G200500
chr7D
87.805
82
6
2
1456
1537
327491085
327491008
3.390000e-15
93.5
17
TraesCS3B01G200500
chr4D
93.122
756
47
4
1
754
85013390
85012638
0.000000e+00
1103.0
18
TraesCS3B01G200500
chr7B
90.957
763
60
8
1
758
356756620
356755862
0.000000e+00
1018.0
19
TraesCS3B01G200500
chr7B
92.135
89
5
1
2798
2884
750378817
750378905
1.200000e-24
124.0
20
TraesCS3B01G200500
chr5B
89.036
757
75
7
3
755
610957670
610956918
0.000000e+00
931.0
21
TraesCS3B01G200500
chr1A
88.742
755
77
8
11
760
549579268
549580019
0.000000e+00
917.0
22
TraesCS3B01G200500
chr1B
88.158
760
73
9
3
759
626403733
626404478
0.000000e+00
889.0
23
TraesCS3B01G200500
chr6A
88.655
714
72
6
3
714
216569692
216570398
0.000000e+00
861.0
24
TraesCS3B01G200500
chr6B
95.445
461
20
1
30
489
384824115
384823655
0.000000e+00
734.0
25
TraesCS3B01G200500
chr4A
95.317
363
14
3
394
754
716546179
716546540
9.940000e-160
573.0
26
TraesCS3B01G200500
chrUn
88.808
411
23
8
1029
1417
293323928
293324337
1.720000e-132
483.0
27
TraesCS3B01G200500
chrUn
88.164
414
26
8
1029
1420
287217493
287217081
3.730000e-129
472.0
28
TraesCS3B01G200500
chrUn
88.493
365
21
15
2834
3194
293324716
293324369
3.810000e-114
422.0
29
TraesCS3B01G200500
chrUn
88.493
365
21
15
2834
3194
389791287
389790940
3.810000e-114
422.0
30
TraesCS3B01G200500
chrUn
88.056
360
22
15
2839
3194
287216710
287217052
1.070000e-109
407.0
31
TraesCS3B01G200500
chrUn
88.056
360
22
15
2839
3194
300436158
300435816
1.070000e-109
407.0
32
TraesCS3B01G200500
chrUn
98.198
222
4
0
1196
1417
389790687
389790908
3.860000e-104
388.0
33
TraesCS3B01G200500
chrUn
97.748
222
5
0
1196
1417
300435563
300435784
1.800000e-102
383.0
34
TraesCS3B01G200500
chr5A
94.828
58
3
0
1481
1538
1710949
1710892
1.220000e-14
91.6
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G200500
chr3B
229006795
229009988
3193
True
5899.0
5899
100.000000
1
3194
1
chr3B.!!$R2
3193
1
TraesCS3B01G200500
chr3D
157750554
157752722
2168
True
1365.0
2146
89.050500
992
3194
2
chr3D.!!$R1
2202
2
TraesCS3B01G200500
chr3D
556835628
556836384
756
False
1136.0
1136
93.808000
1
756
1
chr3D.!!$F1
755
3
TraesCS3B01G200500
chr3A
170388401
170390545
2144
False
920.4
1958
92.492667
993
3194
3
chr3A.!!$F3
2201
4
TraesCS3B01G200500
chr6D
438531644
438532905
1261
False
1581.0
1581
89.199000
1029
2336
1
chr6D.!!$F1
1307
5
TraesCS3B01G200500
chr6D
438519041
438524670
5629
True
924.0
1293
90.727000
1029
3194
3
chr6D.!!$R1
2165
6
TraesCS3B01G200500
chr7D
250625398
250626086
688
True
1116.0
1116
95.936000
1
687
1
chr7D.!!$R1
686
7
TraesCS3B01G200500
chr4D
85012638
85013390
752
True
1103.0
1103
93.122000
1
754
1
chr4D.!!$R1
753
8
TraesCS3B01G200500
chr7B
356755862
356756620
758
True
1018.0
1018
90.957000
1
758
1
chr7B.!!$R1
757
9
TraesCS3B01G200500
chr5B
610956918
610957670
752
True
931.0
931
89.036000
3
755
1
chr5B.!!$R1
752
10
TraesCS3B01G200500
chr1A
549579268
549580019
751
False
917.0
917
88.742000
11
760
1
chr1A.!!$F1
749
11
TraesCS3B01G200500
chr1B
626403733
626404478
745
False
889.0
889
88.158000
3
759
1
chr1B.!!$F1
756
12
TraesCS3B01G200500
chr6A
216569692
216570398
706
False
861.0
861
88.655000
3
714
1
chr6A.!!$F1
711
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
856
866
0.035439
ACCAGGAAATACGGTGGCTG
60.035
55.0
0.00
0.0
32.91
4.85
F
938
948
0.250513
GGGAGCACCACACTAGGAAG
59.749
60.0
1.58
0.0
39.85
3.46
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1805
1854
1.421410
CTCGAACGCCGCAATAGCTT
61.421
55.0
0.00
0.00
39.10
3.74
R
2300
2356
1.750193
AGAACACCACCAACACTGTG
58.250
50.0
6.19
6.19
34.92
3.66
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
190
195
6.205853
ACTGATTTTATCACGCAACACCTTTA
59.794
34.615
0.00
0.00
35.06
1.85
250
255
0.108585
AACACAATGTGGACTCCGCT
59.891
50.000
18.37
0.00
37.94
5.52
272
277
5.621329
GCTGCCGTCAGGTTTTATTGTTATT
60.621
40.000
0.00
0.00
40.65
1.40
274
279
7.079182
TGCCGTCAGGTTTTATTGTTATTAG
57.921
36.000
0.00
0.00
40.50
1.73
287
292
3.202906
TGTTATTAGTTCGGATGCTGCC
58.797
45.455
0.00
0.00
0.00
4.85
362
367
2.142319
GGAATTTGTGTTGCCGCATTT
58.858
42.857
0.00
0.00
0.00
2.32
472
478
6.805271
CACTTCTCCAATGTGATTTTTGCTAG
59.195
38.462
0.00
0.00
33.95
3.42
494
500
3.406764
AGATTGCCAGTCTCTTGTGAAC
58.593
45.455
0.00
0.00
0.00
3.18
496
502
2.936919
TGCCAGTCTCTTGTGAACAT
57.063
45.000
0.00
0.00
0.00
2.71
508
514
8.119226
GTCTCTTGTGAACATGATTAATGCTAC
58.881
37.037
0.00
0.00
40.22
3.58
554
560
9.866655
ATTGGTACTGTGGTAAATGATATCAAT
57.133
29.630
9.99
0.00
0.00
2.57
640
648
8.424918
AGCTGCTCATATTTTAGCTAAGTCTTA
58.575
33.333
6.24
0.00
42.45
2.10
703
713
4.141688
GGAATGTATCCGGGAGACTCTTTT
60.142
45.833
21.35
10.47
38.79
2.27
704
714
5.429130
GAATGTATCCGGGAGACTCTTTTT
58.571
41.667
21.35
8.33
0.00
1.94
771
781
2.730094
AAAAACCCTGCTGCAGCG
59.270
55.556
32.11
25.08
45.83
5.18
772
782
3.504524
AAAAACCCTGCTGCAGCGC
62.505
57.895
32.11
12.85
45.83
5.92
778
788
4.099170
CTGCTGCAGCGCCAGAAC
62.099
66.667
32.11
5.47
45.83
3.01
781
791
2.979676
CTGCAGCGCCAGAACCAA
60.980
61.111
2.29
0.00
34.77
3.67
782
792
2.974489
CTGCAGCGCCAGAACCAAG
61.974
63.158
2.29
0.00
34.77
3.61
783
793
2.980233
GCAGCGCCAGAACCAAGT
60.980
61.111
2.29
0.00
0.00
3.16
784
794
2.555547
GCAGCGCCAGAACCAAGTT
61.556
57.895
2.29
0.00
0.00
2.66
785
795
1.576421
CAGCGCCAGAACCAAGTTC
59.424
57.895
2.29
0.00
42.25
3.01
795
805
2.835027
GAACCAAGTTCTCGGAGTTGT
58.165
47.619
4.69
0.00
39.23
3.32
796
806
3.986277
GAACCAAGTTCTCGGAGTTGTA
58.014
45.455
4.69
0.00
39.23
2.41
797
807
3.382048
ACCAAGTTCTCGGAGTTGTAC
57.618
47.619
4.69
0.35
0.00
2.90
798
808
2.288030
ACCAAGTTCTCGGAGTTGTACG
60.288
50.000
4.69
0.00
0.00
3.67
799
809
1.719780
CAAGTTCTCGGAGTTGTACGC
59.280
52.381
4.69
0.00
0.00
4.42
800
810
0.243095
AGTTCTCGGAGTTGTACGCC
59.757
55.000
4.69
0.00
34.50
5.68
805
815
4.424566
GGAGTTGTACGCCGCCGA
62.425
66.667
0.00
0.00
38.29
5.54
806
816
3.177249
GAGTTGTACGCCGCCGAC
61.177
66.667
0.00
0.00
38.29
4.79
807
817
4.729856
AGTTGTACGCCGCCGACC
62.730
66.667
0.00
0.00
38.29
4.79
814
824
4.215742
CGCCGCCGACCCAGAATA
62.216
66.667
0.00
0.00
36.29
1.75
815
825
2.588034
GCCGCCGACCCAGAATAC
60.588
66.667
0.00
0.00
0.00
1.89
816
826
2.279252
CCGCCGACCCAGAATACG
60.279
66.667
0.00
0.00
0.00
3.06
817
827
2.493030
CGCCGACCCAGAATACGT
59.507
61.111
0.00
0.00
0.00
3.57
818
828
1.727511
CCGCCGACCCAGAATACGTA
61.728
60.000
0.00
0.00
0.00
3.57
819
829
0.593263
CGCCGACCCAGAATACGTAC
60.593
60.000
0.00
0.00
0.00
3.67
820
830
0.593263
GCCGACCCAGAATACGTACG
60.593
60.000
15.01
15.01
0.00
3.67
821
831
0.734889
CCGACCCAGAATACGTACGT
59.265
55.000
25.98
25.98
0.00
3.57
822
832
1.939934
CCGACCCAGAATACGTACGTA
59.060
52.381
28.62
28.62
34.87
3.57
823
833
2.286418
CCGACCCAGAATACGTACGTAC
60.286
54.545
28.99
17.70
33.01
3.67
824
834
2.351418
CGACCCAGAATACGTACGTACA
59.649
50.000
28.99
12.00
33.01
2.90
825
835
3.544834
CGACCCAGAATACGTACGTACAG
60.545
52.174
28.99
17.88
33.01
2.74
826
836
3.347216
ACCCAGAATACGTACGTACAGT
58.653
45.455
28.99
22.44
33.01
3.55
827
837
4.513442
ACCCAGAATACGTACGTACAGTA
58.487
43.478
28.99
23.60
33.01
2.74
838
848
2.709213
ACGTACAGTACAGGGAGAGAC
58.291
52.381
11.37
0.00
0.00
3.36
839
849
2.015587
CGTACAGTACAGGGAGAGACC
58.984
57.143
11.37
0.00
38.08
3.85
840
850
2.617276
CGTACAGTACAGGGAGAGACCA
60.617
54.545
11.37
0.00
41.20
4.02
841
851
2.223803
ACAGTACAGGGAGAGACCAG
57.776
55.000
0.00
0.00
41.20
4.00
842
852
1.272760
ACAGTACAGGGAGAGACCAGG
60.273
57.143
0.00
0.00
41.20
4.45
843
853
1.006043
CAGTACAGGGAGAGACCAGGA
59.994
57.143
0.00
0.00
41.20
3.86
844
854
1.717077
AGTACAGGGAGAGACCAGGAA
59.283
52.381
0.00
0.00
41.20
3.36
845
855
2.111972
AGTACAGGGAGAGACCAGGAAA
59.888
50.000
0.00
0.00
41.20
3.13
846
856
2.350863
ACAGGGAGAGACCAGGAAAT
57.649
50.000
0.00
0.00
41.20
2.17
847
857
3.491766
ACAGGGAGAGACCAGGAAATA
57.508
47.619
0.00
0.00
41.20
1.40
848
858
3.108376
ACAGGGAGAGACCAGGAAATAC
58.892
50.000
0.00
0.00
41.20
1.89
849
859
2.101582
CAGGGAGAGACCAGGAAATACG
59.898
54.545
0.00
0.00
41.20
3.06
850
860
1.413077
GGGAGAGACCAGGAAATACGG
59.587
57.143
0.00
0.00
41.20
4.02
851
861
2.108970
GGAGAGACCAGGAAATACGGT
58.891
52.381
0.00
0.00
38.79
4.83
852
862
2.159085
GGAGAGACCAGGAAATACGGTG
60.159
54.545
0.00
0.00
38.79
4.94
853
863
1.831736
AGAGACCAGGAAATACGGTGG
59.168
52.381
0.00
0.00
36.05
4.61
854
864
0.252197
AGACCAGGAAATACGGTGGC
59.748
55.000
0.00
0.00
32.91
5.01
855
865
0.252197
GACCAGGAAATACGGTGGCT
59.748
55.000
0.00
0.00
32.91
4.75
856
866
0.035439
ACCAGGAAATACGGTGGCTG
60.035
55.000
0.00
0.00
32.91
4.85
857
867
1.376609
CCAGGAAATACGGTGGCTGC
61.377
60.000
0.00
0.00
0.00
5.25
858
868
1.077716
AGGAAATACGGTGGCTGCC
60.078
57.895
12.87
12.87
0.00
4.85
859
869
1.077716
GGAAATACGGTGGCTGCCT
60.078
57.895
21.03
1.26
0.00
4.75
860
870
1.376609
GGAAATACGGTGGCTGCCTG
61.377
60.000
21.03
12.06
0.00
4.85
861
871
0.676782
GAAATACGGTGGCTGCCTGT
60.677
55.000
21.03
17.10
0.00
4.00
862
872
0.251165
AAATACGGTGGCTGCCTGTT
60.251
50.000
21.03
0.75
0.00
3.16
863
873
0.251165
AATACGGTGGCTGCCTGTTT
60.251
50.000
21.03
8.15
0.00
2.83
864
874
0.251165
ATACGGTGGCTGCCTGTTTT
60.251
50.000
21.03
3.04
0.00
2.43
865
875
0.466555
TACGGTGGCTGCCTGTTTTT
60.467
50.000
21.03
1.94
0.00
1.94
866
876
1.007387
CGGTGGCTGCCTGTTTTTC
60.007
57.895
21.03
1.81
0.00
2.29
867
877
1.455383
CGGTGGCTGCCTGTTTTTCT
61.455
55.000
21.03
0.00
0.00
2.52
868
878
0.752658
GGTGGCTGCCTGTTTTTCTT
59.247
50.000
21.03
0.00
0.00
2.52
869
879
1.138859
GGTGGCTGCCTGTTTTTCTTT
59.861
47.619
21.03
0.00
0.00
2.52
870
880
2.204237
GTGGCTGCCTGTTTTTCTTTG
58.796
47.619
21.03
0.00
0.00
2.77
871
881
2.106566
TGGCTGCCTGTTTTTCTTTGA
58.893
42.857
21.03
0.00
0.00
2.69
872
882
2.699846
TGGCTGCCTGTTTTTCTTTGAT
59.300
40.909
21.03
0.00
0.00
2.57
873
883
3.062042
GGCTGCCTGTTTTTCTTTGATG
58.938
45.455
12.43
0.00
0.00
3.07
874
884
3.062042
GCTGCCTGTTTTTCTTTGATGG
58.938
45.455
0.00
0.00
0.00
3.51
875
885
3.243839
GCTGCCTGTTTTTCTTTGATGGA
60.244
43.478
0.00
0.00
0.00
3.41
876
886
4.740334
GCTGCCTGTTTTTCTTTGATGGAA
60.740
41.667
0.00
0.00
0.00
3.53
877
887
5.350504
TGCCTGTTTTTCTTTGATGGAAA
57.649
34.783
0.00
0.00
0.00
3.13
878
888
5.738909
TGCCTGTTTTTCTTTGATGGAAAA
58.261
33.333
0.00
0.00
39.79
2.29
879
889
6.176183
TGCCTGTTTTTCTTTGATGGAAAAA
58.824
32.000
9.37
9.37
44.83
1.94
880
890
6.315891
TGCCTGTTTTTCTTTGATGGAAAAAG
59.684
34.615
12.57
4.82
46.39
2.27
881
891
6.238456
GCCTGTTTTTCTTTGATGGAAAAAGG
60.238
38.462
12.57
12.22
46.39
3.11
882
892
6.260714
CCTGTTTTTCTTTGATGGAAAAAGGG
59.739
38.462
12.57
13.10
46.39
3.95
883
893
6.951971
TGTTTTTCTTTGATGGAAAAAGGGA
58.048
32.000
12.57
1.38
46.39
4.20
884
894
7.398024
TGTTTTTCTTTGATGGAAAAAGGGAA
58.602
30.769
12.57
0.88
46.39
3.97
885
895
8.052141
TGTTTTTCTTTGATGGAAAAAGGGAAT
58.948
29.630
12.57
0.00
46.39
3.01
886
896
8.902806
GTTTTTCTTTGATGGAAAAAGGGAATT
58.097
29.630
12.57
0.00
46.39
2.17
889
899
9.554395
TTTCTTTGATGGAAAAAGGGAATTAAC
57.446
29.630
0.00
0.00
35.71
2.01
890
900
7.375053
TCTTTGATGGAAAAAGGGAATTAACG
58.625
34.615
0.00
0.00
35.71
3.18
891
901
6.902771
TTGATGGAAAAAGGGAATTAACGA
57.097
33.333
0.00
0.00
0.00
3.85
892
902
6.509418
TGATGGAAAAAGGGAATTAACGAG
57.491
37.500
0.00
0.00
0.00
4.18
893
903
6.242396
TGATGGAAAAAGGGAATTAACGAGA
58.758
36.000
0.00
0.00
0.00
4.04
894
904
5.952526
TGGAAAAAGGGAATTAACGAGAC
57.047
39.130
0.00
0.00
0.00
3.36
895
905
4.763279
TGGAAAAAGGGAATTAACGAGACC
59.237
41.667
0.00
0.00
0.00
3.85
896
906
4.142752
GGAAAAAGGGAATTAACGAGACCG
60.143
45.833
0.00
0.00
42.50
4.79
910
920
4.303086
CGAGACCGTTGGATGTATAACT
57.697
45.455
0.00
0.00
0.00
2.24
911
921
4.288531
CGAGACCGTTGGATGTATAACTC
58.711
47.826
0.00
0.00
0.00
3.01
912
922
4.288531
GAGACCGTTGGATGTATAACTCG
58.711
47.826
0.00
0.00
0.00
4.18
913
923
2.793232
GACCGTTGGATGTATAACTCGC
59.207
50.000
0.00
0.00
0.00
5.03
914
924
1.784856
CCGTTGGATGTATAACTCGCG
59.215
52.381
0.00
0.00
0.00
5.87
915
925
1.784856
CGTTGGATGTATAACTCGCGG
59.215
52.381
6.13
0.00
0.00
6.46
916
926
2.132762
GTTGGATGTATAACTCGCGGG
58.867
52.381
3.27
3.27
0.00
6.13
917
927
1.405872
TGGATGTATAACTCGCGGGT
58.594
50.000
5.36
5.36
0.00
5.28
918
928
1.067974
TGGATGTATAACTCGCGGGTG
59.932
52.381
14.98
2.22
0.00
4.61
919
929
1.604693
GGATGTATAACTCGCGGGTGG
60.605
57.143
14.98
0.00
0.00
4.61
920
930
0.391597
ATGTATAACTCGCGGGTGGG
59.608
55.000
14.98
0.00
0.00
4.61
921
931
1.068585
GTATAACTCGCGGGTGGGG
59.931
63.158
14.98
0.00
0.00
4.96
922
932
1.076118
TATAACTCGCGGGTGGGGA
60.076
57.895
14.98
0.00
36.06
4.81
934
944
3.805928
TGGGGAGCACCACACTAG
58.194
61.111
0.00
0.00
45.65
2.57
935
945
1.918293
TGGGGAGCACCACACTAGG
60.918
63.158
0.00
0.00
45.65
3.02
936
946
1.612442
GGGGAGCACCACACTAGGA
60.612
63.158
1.58
0.00
42.91
2.94
937
947
1.198759
GGGGAGCACCACACTAGGAA
61.199
60.000
1.58
0.00
42.91
3.36
938
948
0.250513
GGGAGCACCACACTAGGAAG
59.749
60.000
1.58
0.00
39.85
3.46
939
949
0.250513
GGAGCACCACACTAGGAAGG
59.749
60.000
0.00
0.00
35.97
3.46
940
950
1.267121
GAGCACCACACTAGGAAGGA
58.733
55.000
0.00
0.00
0.00
3.36
941
951
1.623811
GAGCACCACACTAGGAAGGAA
59.376
52.381
0.00
0.00
0.00
3.36
942
952
1.625818
AGCACCACACTAGGAAGGAAG
59.374
52.381
0.00
0.00
0.00
3.46
943
953
1.339151
GCACCACACTAGGAAGGAAGG
60.339
57.143
0.00
0.00
0.00
3.46
944
954
2.257207
CACCACACTAGGAAGGAAGGA
58.743
52.381
0.00
0.00
0.00
3.36
945
955
2.234908
CACCACACTAGGAAGGAAGGAG
59.765
54.545
0.00
0.00
0.00
3.69
946
956
1.208293
CCACACTAGGAAGGAAGGAGC
59.792
57.143
0.00
0.00
0.00
4.70
947
957
1.208293
CACACTAGGAAGGAAGGAGCC
59.792
57.143
0.00
0.00
0.00
4.70
948
958
0.833949
CACTAGGAAGGAAGGAGCCC
59.166
60.000
0.00
0.00
0.00
5.19
949
959
0.326713
ACTAGGAAGGAAGGAGCCCC
60.327
60.000
0.00
0.00
0.00
5.80
950
960
0.326618
CTAGGAAGGAAGGAGCCCCA
60.327
60.000
0.00
0.00
33.88
4.96
951
961
0.346932
TAGGAAGGAAGGAGCCCCAT
59.653
55.000
0.00
0.00
33.88
4.00
952
962
0.990818
AGGAAGGAAGGAGCCCCATC
60.991
60.000
0.00
0.00
33.88
3.51
955
965
3.426917
GGAAGGAGCCCCATCCAA
58.573
61.111
3.26
0.00
46.87
3.53
956
966
1.076705
GGAAGGAGCCCCATCCAAC
60.077
63.158
3.26
0.00
46.87
3.77
957
967
1.076705
GAAGGAGCCCCATCCAACC
60.077
63.158
0.00
0.00
42.26
3.77
958
968
2.573893
GAAGGAGCCCCATCCAACCC
62.574
65.000
0.00
0.00
42.26
4.11
959
969
4.143301
GGAGCCCCATCCAACCCC
62.143
72.222
0.00
0.00
39.34
4.95
960
970
3.023735
GAGCCCCATCCAACCCCT
61.024
66.667
0.00
0.00
0.00
4.79
961
971
1.696314
GAGCCCCATCCAACCCCTA
60.696
63.158
0.00
0.00
0.00
3.53
962
972
1.230482
AGCCCCATCCAACCCCTAA
60.230
57.895
0.00
0.00
0.00
2.69
963
973
1.076265
GCCCCATCCAACCCCTAAC
60.076
63.158
0.00
0.00
0.00
2.34
964
974
1.618586
CCCCATCCAACCCCTAACC
59.381
63.158
0.00
0.00
0.00
2.85
965
975
1.618586
CCCATCCAACCCCTAACCC
59.381
63.158
0.00
0.00
0.00
4.11
966
976
1.618586
CCATCCAACCCCTAACCCC
59.381
63.158
0.00
0.00
0.00
4.95
967
977
1.618586
CATCCAACCCCTAACCCCC
59.381
63.158
0.00
0.00
0.00
5.40
982
992
4.675303
CCCCTCCCTCCCACCACA
62.675
72.222
0.00
0.00
0.00
4.17
983
993
2.531685
CCCTCCCTCCCACCACAA
60.532
66.667
0.00
0.00
0.00
3.33
984
994
2.160171
CCCTCCCTCCCACCACAAA
61.160
63.158
0.00
0.00
0.00
2.83
985
995
1.074951
CCTCCCTCCCACCACAAAC
59.925
63.158
0.00
0.00
0.00
2.93
986
996
1.074951
CTCCCTCCCACCACAAACC
59.925
63.158
0.00
0.00
0.00
3.27
987
997
2.117423
CCCTCCCACCACAAACCC
59.883
66.667
0.00
0.00
0.00
4.11
988
998
2.117423
CCTCCCACCACAAACCCC
59.883
66.667
0.00
0.00
0.00
4.95
989
999
2.282180
CTCCCACCACAAACCCCG
60.282
66.667
0.00
0.00
0.00
5.73
990
1000
4.589675
TCCCACCACAAACCCCGC
62.590
66.667
0.00
0.00
0.00
6.13
1130
1146
2.926242
TCCACCCTTCCCCGACAC
60.926
66.667
0.00
0.00
0.00
3.67
1653
1702
1.680522
CCACGGAGATACCTGCTGCT
61.681
60.000
0.00
0.00
36.31
4.24
1668
1717
2.997897
GCTGTCGAGGAGGGTGGT
60.998
66.667
0.00
0.00
0.00
4.16
1733
1782
0.905357
CGTGGTGGAAGGAAGAGGAT
59.095
55.000
0.00
0.00
0.00
3.24
1854
1903
2.639327
GGTGATTGCACAGCCACCC
61.639
63.158
12.47
0.00
46.96
4.61
1974
2026
2.828868
AGCTCGGTTGCTGTTCCA
59.171
55.556
0.00
0.00
42.33
3.53
2052
2104
2.600470
GTTGGTCTTGGGGTGGCC
60.600
66.667
0.00
0.00
0.00
5.36
2217
2270
9.407380
TGATTACCTCATATTGTGCTGTAAAAT
57.593
29.630
0.00
0.00
31.71
1.82
2300
2356
2.735126
CGGCATTGGAAAAGGCATACAC
60.735
50.000
0.00
0.00
40.37
2.90
2305
2361
3.222173
TGGAAAAGGCATACACACAGT
57.778
42.857
0.00
0.00
0.00
3.55
2363
2421
1.664151
GGGTCGCTTAGTTGCATGTAC
59.336
52.381
0.00
0.00
0.00
2.90
2364
2422
2.618053
GGTCGCTTAGTTGCATGTACT
58.382
47.619
7.59
7.59
0.00
2.73
2365
2423
2.348666
GGTCGCTTAGTTGCATGTACTG
59.651
50.000
11.44
0.00
0.00
2.74
2428
2489
5.648178
TGGGATGATGATCAAAGTTTGTG
57.352
39.130
15.08
0.00
0.00
3.33
2450
2511
6.591448
TGTGATCACTTGTAGCTCACTTTATG
59.409
38.462
25.55
0.00
37.65
1.90
2480
2553
6.866010
TGCGATATAAGAAATGCAGTGAAT
57.134
33.333
0.00
0.00
0.00
2.57
2663
6240
3.284617
CCAATGCATCCATCTTCTGTGA
58.715
45.455
0.00
0.00
0.00
3.58
2676
6253
6.351711
CCATCTTCTGTGATAGTTCTCCTGTT
60.352
42.308
0.00
0.00
0.00
3.16
2696
6273
6.127897
CCTGTTATCCAGTTTGAGTCAATTCC
60.128
42.308
6.36
0.00
39.74
3.01
3016
6601
1.295101
CACGGCCATACACACTCCA
59.705
57.895
2.24
0.00
0.00
3.86
3112
6728
4.155733
CGTATCCCAGTGGCGGCA
62.156
66.667
7.97
7.97
0.00
5.69
3144
6763
4.280494
ACGCCGTAGCCATAGCCG
62.280
66.667
0.00
0.00
41.25
5.52
3145
6764
4.280494
CGCCGTAGCCATAGCCGT
62.280
66.667
0.00
0.00
41.25
5.68
3146
6765
2.911484
CGCCGTAGCCATAGCCGTA
61.911
63.158
0.00
0.00
41.25
4.02
3147
6766
1.080705
GCCGTAGCCATAGCCGTAG
60.081
63.158
0.00
0.00
41.25
3.51
3148
6767
1.080705
CCGTAGCCATAGCCGTAGC
60.081
63.158
0.00
0.00
41.25
3.58
3149
6768
1.080705
CGTAGCCATAGCCGTAGCC
60.081
63.158
0.00
0.00
41.25
3.93
3150
6769
1.080705
GTAGCCATAGCCGTAGCCG
60.081
63.158
0.00
0.00
41.25
5.52
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
178
182
1.531149
CAGAGGTGTAAAGGTGTTGCG
59.469
52.381
0.00
0.00
0.00
4.85
190
195
3.197333
CCTGATGACAGATTCAGAGGTGT
59.803
47.826
6.18
0.00
46.03
4.16
250
255
5.968528
AATAACAATAAAACCTGACGGCA
57.031
34.783
0.00
0.00
0.00
5.69
287
292
7.790974
CAGACATGTTGATATCTGGAAATACG
58.209
38.462
0.00
0.00
35.87
3.06
472
478
3.325293
TCACAAGAGACTGGCAATCTC
57.675
47.619
17.73
17.73
42.57
2.75
494
500
6.460123
GGTCAAAGGTGGTAGCATTAATCATG
60.460
42.308
0.00
0.00
35.73
3.07
496
502
4.947388
GGTCAAAGGTGGTAGCATTAATCA
59.053
41.667
0.00
0.00
0.00
2.57
508
514
1.165270
GATGGAACGGTCAAAGGTGG
58.835
55.000
1.31
0.00
0.00
4.61
554
560
3.067106
GTCAAAGATCCTCGAAGCAACA
58.933
45.455
0.00
0.00
0.00
3.33
724
734
6.873997
TGAGAGAGAAATGTCGGCTTTATTA
58.126
36.000
0.00
0.00
0.00
0.98
761
771
4.099170
GTTCTGGCGCTGCAGCAG
62.099
66.667
36.03
27.94
42.21
4.24
764
774
2.974489
CTTGGTTCTGGCGCTGCAG
61.974
63.158
10.11
10.11
0.00
4.41
765
775
2.979676
CTTGGTTCTGGCGCTGCA
60.980
61.111
7.64
0.00
0.00
4.41
766
776
2.463675
GAACTTGGTTCTGGCGCTGC
62.464
60.000
7.64
0.00
39.23
5.25
767
777
1.576421
GAACTTGGTTCTGGCGCTG
59.424
57.895
7.64
0.11
39.23
5.18
768
778
4.065110
GAACTTGGTTCTGGCGCT
57.935
55.556
7.64
0.00
39.23
5.92
775
785
2.835027
ACAACTCCGAGAACTTGGTTC
58.165
47.619
1.33
2.57
42.25
3.62
776
786
3.725490
GTACAACTCCGAGAACTTGGTT
58.275
45.455
1.33
0.00
35.57
3.67
777
787
2.288030
CGTACAACTCCGAGAACTTGGT
60.288
50.000
1.33
0.00
35.57
3.67
778
788
2.325761
CGTACAACTCCGAGAACTTGG
58.674
52.381
1.33
1.86
35.37
3.61
779
789
1.719780
GCGTACAACTCCGAGAACTTG
59.280
52.381
1.33
0.00
0.00
3.16
780
790
1.336609
GGCGTACAACTCCGAGAACTT
60.337
52.381
1.33
0.00
0.00
2.66
781
791
0.243095
GGCGTACAACTCCGAGAACT
59.757
55.000
1.33
0.00
0.00
3.01
782
792
2.734379
GGCGTACAACTCCGAGAAC
58.266
57.895
1.33
0.00
0.00
3.01
788
798
4.424566
TCGGCGGCGTACAACTCC
62.425
66.667
31.06
0.00
0.00
3.85
789
799
3.177249
GTCGGCGGCGTACAACTC
61.177
66.667
31.06
9.97
0.00
3.01
790
800
4.729856
GGTCGGCGGCGTACAACT
62.730
66.667
31.06
0.00
0.00
3.16
797
807
4.215742
TATTCTGGGTCGGCGGCG
62.216
66.667
27.15
27.15
0.00
6.46
798
808
2.588034
GTATTCTGGGTCGGCGGC
60.588
66.667
7.21
4.32
0.00
6.53
799
809
1.727511
TACGTATTCTGGGTCGGCGG
61.728
60.000
7.21
0.00
0.00
6.13
800
810
0.593263
GTACGTATTCTGGGTCGGCG
60.593
60.000
0.00
0.00
0.00
6.46
801
811
0.593263
CGTACGTATTCTGGGTCGGC
60.593
60.000
7.22
0.00
0.00
5.54
802
812
0.734889
ACGTACGTATTCTGGGTCGG
59.265
55.000
21.41
0.00
0.00
4.79
803
813
2.351418
TGTACGTACGTATTCTGGGTCG
59.649
50.000
29.05
0.00
32.82
4.79
804
814
3.375299
ACTGTACGTACGTATTCTGGGTC
59.625
47.826
29.05
14.94
32.82
4.46
805
815
3.347216
ACTGTACGTACGTATTCTGGGT
58.653
45.455
29.05
17.68
32.82
4.51
806
816
4.837567
GTACTGTACGTACGTATTCTGGG
58.162
47.826
29.05
17.15
39.15
4.45
816
826
3.620821
GTCTCTCCCTGTACTGTACGTAC
59.379
52.174
18.90
18.90
46.94
3.67
817
827
3.369892
GGTCTCTCCCTGTACTGTACGTA
60.370
52.174
12.87
0.00
0.00
3.57
818
828
2.617532
GGTCTCTCCCTGTACTGTACGT
60.618
54.545
12.87
0.00
0.00
3.57
819
829
2.015587
GGTCTCTCCCTGTACTGTACG
58.984
57.143
12.87
7.87
0.00
3.67
820
830
3.018149
CTGGTCTCTCCCTGTACTGTAC
58.982
54.545
10.98
10.98
34.77
2.90
821
831
2.025226
CCTGGTCTCTCCCTGTACTGTA
60.025
54.545
0.00
0.00
34.77
2.74
822
832
1.272760
CCTGGTCTCTCCCTGTACTGT
60.273
57.143
0.00
0.00
34.77
3.55
823
833
1.006043
TCCTGGTCTCTCCCTGTACTG
59.994
57.143
0.00
0.00
34.77
2.74
824
834
1.383963
TCCTGGTCTCTCCCTGTACT
58.616
55.000
0.00
0.00
34.77
2.73
825
835
2.233305
TTCCTGGTCTCTCCCTGTAC
57.767
55.000
0.00
0.00
34.77
2.90
826
836
3.491766
ATTTCCTGGTCTCTCCCTGTA
57.508
47.619
0.00
0.00
34.77
2.74
827
837
2.350863
ATTTCCTGGTCTCTCCCTGT
57.649
50.000
0.00
0.00
34.77
4.00
828
838
2.101582
CGTATTTCCTGGTCTCTCCCTG
59.898
54.545
0.00
0.00
34.77
4.45
829
839
2.389715
CGTATTTCCTGGTCTCTCCCT
58.610
52.381
0.00
0.00
34.77
4.20
830
840
1.413077
CCGTATTTCCTGGTCTCTCCC
59.587
57.143
0.00
0.00
34.77
4.30
831
841
2.108970
ACCGTATTTCCTGGTCTCTCC
58.891
52.381
0.00
0.00
0.00
3.71
832
842
2.159085
CCACCGTATTTCCTGGTCTCTC
60.159
54.545
0.00
0.00
32.48
3.20
833
843
1.831736
CCACCGTATTTCCTGGTCTCT
59.168
52.381
0.00
0.00
32.48
3.10
834
844
1.742750
GCCACCGTATTTCCTGGTCTC
60.743
57.143
0.00
0.00
32.48
3.36
835
845
0.252197
GCCACCGTATTTCCTGGTCT
59.748
55.000
0.00
0.00
32.48
3.85
836
846
0.252197
AGCCACCGTATTTCCTGGTC
59.748
55.000
0.00
0.00
32.48
4.02
837
847
0.035439
CAGCCACCGTATTTCCTGGT
60.035
55.000
0.00
0.00
36.10
4.00
838
848
1.376609
GCAGCCACCGTATTTCCTGG
61.377
60.000
0.00
0.00
0.00
4.45
839
849
1.376609
GGCAGCCACCGTATTTCCTG
61.377
60.000
6.55
0.00
0.00
3.86
840
850
1.077716
GGCAGCCACCGTATTTCCT
60.078
57.895
6.55
0.00
0.00
3.36
841
851
1.077716
AGGCAGCCACCGTATTTCC
60.078
57.895
15.80
0.00
33.69
3.13
842
852
0.676782
ACAGGCAGCCACCGTATTTC
60.677
55.000
15.80
0.00
33.69
2.17
843
853
0.251165
AACAGGCAGCCACCGTATTT
60.251
50.000
15.80
0.00
33.69
1.40
844
854
0.251165
AAACAGGCAGCCACCGTATT
60.251
50.000
15.80
2.85
33.69
1.89
845
855
0.251165
AAAACAGGCAGCCACCGTAT
60.251
50.000
15.80
0.00
33.69
3.06
846
856
0.466555
AAAAACAGGCAGCCACCGTA
60.467
50.000
15.80
0.00
33.69
4.02
847
857
1.734388
GAAAAACAGGCAGCCACCGT
61.734
55.000
15.80
4.61
33.69
4.83
848
858
1.007387
GAAAAACAGGCAGCCACCG
60.007
57.895
15.80
3.87
33.69
4.94
849
859
0.752658
AAGAAAAACAGGCAGCCACC
59.247
50.000
15.80
0.00
0.00
4.61
850
860
2.159114
TCAAAGAAAAACAGGCAGCCAC
60.159
45.455
15.80
0.00
0.00
5.01
851
861
2.106566
TCAAAGAAAAACAGGCAGCCA
58.893
42.857
15.80
0.00
0.00
4.75
852
862
2.888834
TCAAAGAAAAACAGGCAGCC
57.111
45.000
1.84
1.84
0.00
4.85
853
863
3.062042
CCATCAAAGAAAAACAGGCAGC
58.938
45.455
0.00
0.00
0.00
5.25
854
864
4.589216
TCCATCAAAGAAAAACAGGCAG
57.411
40.909
0.00
0.00
0.00
4.85
855
865
5.350504
TTTCCATCAAAGAAAAACAGGCA
57.649
34.783
0.00
0.00
30.48
4.75
856
866
6.238456
CCTTTTTCCATCAAAGAAAAACAGGC
60.238
38.462
7.19
0.00
44.25
4.85
857
867
6.260714
CCCTTTTTCCATCAAAGAAAAACAGG
59.739
38.462
7.19
8.01
44.25
4.00
858
868
7.047271
TCCCTTTTTCCATCAAAGAAAAACAG
58.953
34.615
7.19
3.32
44.25
3.16
859
869
6.951971
TCCCTTTTTCCATCAAAGAAAAACA
58.048
32.000
7.19
0.00
44.25
2.83
860
870
7.857734
TTCCCTTTTTCCATCAAAGAAAAAC
57.142
32.000
7.19
0.00
44.25
2.43
863
873
9.554395
GTTAATTCCCTTTTTCCATCAAAGAAA
57.446
29.630
0.00
0.00
33.69
2.52
864
874
7.870445
CGTTAATTCCCTTTTTCCATCAAAGAA
59.130
33.333
0.00
0.00
33.69
2.52
865
875
7.231722
TCGTTAATTCCCTTTTTCCATCAAAGA
59.768
33.333
0.00
0.00
33.69
2.52
866
876
7.375053
TCGTTAATTCCCTTTTTCCATCAAAG
58.625
34.615
0.00
0.00
0.00
2.77
867
877
7.231722
TCTCGTTAATTCCCTTTTTCCATCAAA
59.768
33.333
0.00
0.00
0.00
2.69
868
878
6.717540
TCTCGTTAATTCCCTTTTTCCATCAA
59.282
34.615
0.00
0.00
0.00
2.57
869
879
6.150474
GTCTCGTTAATTCCCTTTTTCCATCA
59.850
38.462
0.00
0.00
0.00
3.07
870
880
6.404403
GGTCTCGTTAATTCCCTTTTTCCATC
60.404
42.308
0.00
0.00
0.00
3.51
871
881
5.417894
GGTCTCGTTAATTCCCTTTTTCCAT
59.582
40.000
0.00
0.00
0.00
3.41
872
882
4.763279
GGTCTCGTTAATTCCCTTTTTCCA
59.237
41.667
0.00
0.00
0.00
3.53
873
883
4.142752
CGGTCTCGTTAATTCCCTTTTTCC
60.143
45.833
0.00
0.00
0.00
3.13
874
884
4.966249
CGGTCTCGTTAATTCCCTTTTTC
58.034
43.478
0.00
0.00
0.00
2.29
889
899
4.288531
GAGTTATACATCCAACGGTCTCG
58.711
47.826
0.00
0.00
43.02
4.04
890
900
4.288531
CGAGTTATACATCCAACGGTCTC
58.711
47.826
0.00
0.00
0.00
3.36
891
901
3.490419
GCGAGTTATACATCCAACGGTCT
60.490
47.826
0.00
0.00
0.00
3.85
892
902
2.793232
GCGAGTTATACATCCAACGGTC
59.207
50.000
0.00
0.00
0.00
4.79
893
903
2.797087
CGCGAGTTATACATCCAACGGT
60.797
50.000
0.00
0.00
0.00
4.83
894
904
1.784856
CGCGAGTTATACATCCAACGG
59.215
52.381
0.00
0.00
0.00
4.44
895
905
1.784856
CCGCGAGTTATACATCCAACG
59.215
52.381
8.23
0.00
0.00
4.10
896
906
2.132762
CCCGCGAGTTATACATCCAAC
58.867
52.381
8.23
0.00
0.00
3.77
897
907
1.758280
ACCCGCGAGTTATACATCCAA
59.242
47.619
8.23
0.00
0.00
3.53
898
908
1.067974
CACCCGCGAGTTATACATCCA
59.932
52.381
8.23
0.00
0.00
3.41
899
909
1.604693
CCACCCGCGAGTTATACATCC
60.605
57.143
8.23
0.00
0.00
3.51
900
910
1.604693
CCCACCCGCGAGTTATACATC
60.605
57.143
8.23
0.00
0.00
3.06
901
911
0.391597
CCCACCCGCGAGTTATACAT
59.608
55.000
8.23
0.00
0.00
2.29
902
912
1.678598
CCCCACCCGCGAGTTATACA
61.679
60.000
8.23
0.00
0.00
2.29
903
913
1.068585
CCCCACCCGCGAGTTATAC
59.931
63.158
8.23
0.00
0.00
1.47
904
914
1.076118
TCCCCACCCGCGAGTTATA
60.076
57.895
8.23
0.00
0.00
0.98
905
915
2.364579
TCCCCACCCGCGAGTTAT
60.365
61.111
8.23
0.00
0.00
1.89
906
916
3.072468
CTCCCCACCCGCGAGTTA
61.072
66.667
8.23
0.00
0.00
2.24
917
927
1.918293
CCTAGTGTGGTGCTCCCCA
60.918
63.158
1.59
0.00
0.00
4.96
918
928
1.198759
TTCCTAGTGTGGTGCTCCCC
61.199
60.000
1.59
0.00
0.00
4.81
919
929
0.250513
CTTCCTAGTGTGGTGCTCCC
59.749
60.000
1.59
0.00
0.00
4.30
920
930
0.250513
CCTTCCTAGTGTGGTGCTCC
59.749
60.000
0.00
0.00
0.00
4.70
921
931
1.267121
TCCTTCCTAGTGTGGTGCTC
58.733
55.000
0.00
0.00
0.00
4.26
922
932
1.625818
CTTCCTTCCTAGTGTGGTGCT
59.374
52.381
0.00
0.00
0.00
4.40
923
933
1.339151
CCTTCCTTCCTAGTGTGGTGC
60.339
57.143
0.00
0.00
0.00
5.01
924
934
2.234908
CTCCTTCCTTCCTAGTGTGGTG
59.765
54.545
0.00
0.00
0.00
4.17
925
935
2.541466
CTCCTTCCTTCCTAGTGTGGT
58.459
52.381
0.00
0.00
0.00
4.16
926
936
1.208293
GCTCCTTCCTTCCTAGTGTGG
59.792
57.143
0.00
0.00
0.00
4.17
927
937
1.208293
GGCTCCTTCCTTCCTAGTGTG
59.792
57.143
0.00
0.00
0.00
3.82
928
938
1.574263
GGCTCCTTCCTTCCTAGTGT
58.426
55.000
0.00
0.00
0.00
3.55
929
939
0.833949
GGGCTCCTTCCTTCCTAGTG
59.166
60.000
0.00
0.00
0.00
2.74
930
940
0.326713
GGGGCTCCTTCCTTCCTAGT
60.327
60.000
0.00
0.00
0.00
2.57
931
941
0.326618
TGGGGCTCCTTCCTTCCTAG
60.327
60.000
3.07
0.00
0.00
3.02
932
942
0.346932
ATGGGGCTCCTTCCTTCCTA
59.653
55.000
3.07
0.00
0.00
2.94
933
943
0.990818
GATGGGGCTCCTTCCTTCCT
60.991
60.000
3.07
0.00
32.71
3.36
934
944
1.534203
GATGGGGCTCCTTCCTTCC
59.466
63.158
3.07
0.00
32.71
3.46
939
949
1.076705
GGTTGGATGGGGCTCCTTC
60.077
63.158
10.10
10.10
36.20
3.46
940
950
2.626467
GGGTTGGATGGGGCTCCTT
61.626
63.158
3.07
0.00
36.20
3.36
941
951
3.023735
GGGTTGGATGGGGCTCCT
61.024
66.667
3.07
0.00
36.20
3.69
942
952
4.143301
GGGGTTGGATGGGGCTCC
62.143
72.222
0.00
0.00
35.74
4.70
943
953
1.286305
TTAGGGGTTGGATGGGGCTC
61.286
60.000
0.00
0.00
0.00
4.70
944
954
1.230482
TTAGGGGTTGGATGGGGCT
60.230
57.895
0.00
0.00
0.00
5.19
945
955
1.076265
GTTAGGGGTTGGATGGGGC
60.076
63.158
0.00
0.00
0.00
5.80
946
956
1.618586
GGTTAGGGGTTGGATGGGG
59.381
63.158
0.00
0.00
0.00
4.96
947
957
1.618586
GGGTTAGGGGTTGGATGGG
59.381
63.158
0.00
0.00
0.00
4.00
948
958
1.618586
GGGGTTAGGGGTTGGATGG
59.381
63.158
0.00
0.00
0.00
3.51
949
959
1.618586
GGGGGTTAGGGGTTGGATG
59.381
63.158
0.00
0.00
0.00
3.51
950
960
4.199287
GGGGGTTAGGGGTTGGAT
57.801
61.111
0.00
0.00
0.00
3.41
965
975
4.675303
TGTGGTGGGAGGGAGGGG
62.675
72.222
0.00
0.00
0.00
4.79
966
976
2.160171
TTTGTGGTGGGAGGGAGGG
61.160
63.158
0.00
0.00
0.00
4.30
967
977
1.074951
GTTTGTGGTGGGAGGGAGG
59.925
63.158
0.00
0.00
0.00
4.30
968
978
1.074951
GGTTTGTGGTGGGAGGGAG
59.925
63.158
0.00
0.00
0.00
4.30
969
979
2.466186
GGGTTTGTGGTGGGAGGGA
61.466
63.158
0.00
0.00
0.00
4.20
970
980
2.117423
GGGTTTGTGGTGGGAGGG
59.883
66.667
0.00
0.00
0.00
4.30
971
981
2.117423
GGGGTTTGTGGTGGGAGG
59.883
66.667
0.00
0.00
0.00
4.30
972
982
2.282180
CGGGGTTTGTGGTGGGAG
60.282
66.667
0.00
0.00
0.00
4.30
973
983
4.589675
GCGGGGTTTGTGGTGGGA
62.590
66.667
0.00
0.00
0.00
4.37
1062
1078
3.057548
TCGTTGGAGGCGTCGCTA
61.058
61.111
18.11
0.00
0.00
4.26
1305
1345
1.211969
CGTGTCGTACTGGTGGGAG
59.788
63.158
0.00
0.00
0.00
4.30
1308
1348
2.260434
CCCGTGTCGTACTGGTGG
59.740
66.667
0.00
0.00
0.00
4.61
1642
1691
0.684479
TCCTCGACAGCAGCAGGTAT
60.684
55.000
0.00
0.00
0.00
2.73
1643
1692
1.304134
TCCTCGACAGCAGCAGGTA
60.304
57.895
0.00
0.00
0.00
3.08
1644
1693
2.601666
TCCTCGACAGCAGCAGGT
60.602
61.111
0.00
0.00
0.00
4.00
1653
1702
2.603473
CCACCACCCTCCTCGACA
60.603
66.667
0.00
0.00
0.00
4.35
1733
1782
2.586245
CCTCAATCTCCTGCGCCA
59.414
61.111
4.18
0.00
0.00
5.69
1805
1854
1.421410
CTCGAACGCCGCAATAGCTT
61.421
55.000
0.00
0.00
39.10
3.74
1812
1861
2.430244
GAACTCTCGAACGCCGCA
60.430
61.111
0.00
0.00
38.37
5.69
1974
2026
1.950748
ATCCTAGTCCGGTCTGCCCT
61.951
60.000
11.77
0.00
0.00
5.19
2300
2356
1.750193
AGAACACCACCAACACTGTG
58.250
50.000
6.19
6.19
34.92
3.66
2305
2361
3.576078
ATGAGAAGAACACCACCAACA
57.424
42.857
0.00
0.00
0.00
3.33
2363
2421
6.878317
TCTCTAACCTTATGATGACAACCAG
58.122
40.000
0.00
0.00
0.00
4.00
2364
2422
6.867519
TCTCTAACCTTATGATGACAACCA
57.132
37.500
0.00
0.00
0.00
3.67
2365
2423
7.500992
TCATCTCTAACCTTATGATGACAACC
58.499
38.462
0.00
0.00
38.67
3.77
2428
2489
5.814705
AGCATAAAGTGAGCTACAAGTGATC
59.185
40.000
0.00
0.00
36.73
2.92
2450
2511
5.121298
TGCATTTCTTATATCGCATCAGAGC
59.879
40.000
0.00
0.00
0.00
4.09
2480
2553
6.127366
GCCATAAATCTCCAGATTCAAAACCA
60.127
38.462
2.24
0.00
43.41
3.67
2544
6118
7.800767
TGTTTTCAATTTCATCTCTCTTCTCG
58.199
34.615
0.00
0.00
0.00
4.04
2576
6153
2.917933
TCCAGGCAGCACATGTATTAC
58.082
47.619
0.00
0.00
0.00
1.89
2577
6154
3.278574
GTTCCAGGCAGCACATGTATTA
58.721
45.455
0.00
0.00
0.00
0.98
2578
6155
2.094675
GTTCCAGGCAGCACATGTATT
58.905
47.619
0.00
0.00
0.00
1.89
2676
6253
5.160607
ACGGAATTGACTCAAACTGGATA
57.839
39.130
0.00
0.00
0.00
2.59
2696
6273
2.224549
TGTCAACGGCTTAATCCAAACG
59.775
45.455
0.00
0.00
0.00
3.60
2899
6482
7.827729
TGCTTCAGTCTGTCTATACTAAGTACA
59.172
37.037
0.00
0.00
0.00
2.90
2900
6483
8.211116
TGCTTCAGTCTGTCTATACTAAGTAC
57.789
38.462
0.00
0.00
0.00
2.73
2901
6484
8.982091
ATGCTTCAGTCTGTCTATACTAAGTA
57.018
34.615
0.00
0.00
0.00
2.24
2902
6485
7.558081
TGATGCTTCAGTCTGTCTATACTAAGT
59.442
37.037
0.00
0.00
0.00
2.24
2903
6486
7.935520
TGATGCTTCAGTCTGTCTATACTAAG
58.064
38.462
0.00
0.00
0.00
2.18
2904
6487
7.881775
TGATGCTTCAGTCTGTCTATACTAA
57.118
36.000
0.00
0.00
0.00
2.24
3016
6601
2.495669
GCAAGAGGAGTAAGACTCTGCT
59.504
50.000
6.58
2.17
44.46
4.24
3022
6607
1.552792
AGCCTGCAAGAGGAGTAAGAC
59.447
52.381
0.00
0.00
46.33
3.01
3087
6703
0.249489
CACTGGGATACGCCTGCTAC
60.249
60.000
0.00
0.00
36.66
3.58
3123
6739
3.768185
CTATGGCTACGGCGTGCGT
62.768
63.158
24.86
16.83
39.81
5.24
3147
6766
1.359459
GCCACTACTACAGCAACGGC
61.359
60.000
0.00
0.00
41.61
5.68
3148
6767
0.037697
TGCCACTACTACAGCAACGG
60.038
55.000
0.00
0.00
30.97
4.44
3149
6768
1.350193
CTGCCACTACTACAGCAACG
58.650
55.000
0.00
0.00
34.26
4.10
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.