Multiple sequence alignment - TraesCS3B01G200300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G200300 chr3B 100.000 2674 0 0 1 2674 228981982 228984655 0.000000e+00 4939.0
1 TraesCS3B01G200300 chr3B 79.353 896 119 36 843 1706 229006078 229006939 1.070000e-158 569.0
2 TraesCS3B01G200300 chr3A 92.812 1099 50 8 1031 2109 170486499 170485410 0.000000e+00 1565.0
3 TraesCS3B01G200300 chr3A 88.776 588 38 11 450 1034 170487095 170486533 0.000000e+00 695.0
4 TraesCS3B01G200300 chr3A 82.912 673 72 27 1047 1706 170391046 170390404 1.390000e-157 566.0
5 TraesCS3B01G200300 chr3A 82.635 167 23 4 1546 1706 170310543 170310709 2.770000e-30 143.0
6 TraesCS3B01G200300 chr3D 90.859 1083 57 15 1031 2103 157659668 157660718 0.000000e+00 1413.0
7 TraesCS3B01G200300 chr3D 93.718 589 22 7 450 1034 157659057 157659634 0.000000e+00 869.0
8 TraesCS3B01G200300 chr3D 81.722 662 77 25 1047 1706 157750070 157750689 1.840000e-141 512.0
9 TraesCS3B01G200300 chr3D 84.416 77 4 6 2109 2177 500458744 500458820 4.780000e-08 69.4
10 TraesCS3B01G200300 chr2D 95.444 417 17 2 1 416 547803270 547803685 0.000000e+00 664.0
11 TraesCS3B01G200300 chr2D 94.019 418 23 2 1 416 165538133 165537716 1.350000e-177 632.0
12 TraesCS3B01G200300 chr2D 91.667 48 3 1 2109 2155 305841920 305841967 6.180000e-07 65.8
13 TraesCS3B01G200300 chr6D 94.484 417 22 1 1 416 109266990 109267406 2.240000e-180 641.0
14 TraesCS3B01G200300 chr6D 94.245 417 23 1 1 416 426929998 426929582 1.040000e-178 636.0
15 TraesCS3B01G200300 chr6D 77.009 809 88 47 843 1629 438518367 438519099 9.040000e-100 374.0
16 TraesCS3B01G200300 chr4D 94.484 417 22 1 1 416 3384580 3384996 2.240000e-180 641.0
17 TraesCS3B01G200300 chr4D 94.484 417 22 1 1 416 5528890 5529306 2.240000e-180 641.0
18 TraesCS3B01G200300 chr4D 93.839 422 25 1 1 421 116790956 116790535 3.760000e-178 634.0
19 TraesCS3B01G200300 chr4D 92.157 51 2 2 2109 2157 354855166 354855216 1.330000e-08 71.3
20 TraesCS3B01G200300 chr4A 94.471 416 23 0 1 416 706469978 706469563 2.240000e-180 641.0
21 TraesCS3B01G200300 chr1D 94.019 418 23 2 1 417 451292294 451291878 1.350000e-177 632.0
22 TraesCS3B01G200300 chr1D 90.385 52 3 2 2108 2157 61357873 61357924 1.720000e-07 67.6
23 TraesCS3B01G200300 chr1D 90.385 52 3 2 2108 2157 61363966 61364017 1.720000e-07 67.6
24 TraesCS3B01G200300 chr1D 90.385 52 3 2 2108 2157 61370059 61370110 1.720000e-07 67.6
25 TraesCS3B01G200300 chr1D 86.792 53 7 0 2110 2162 66544069 66544017 2.870000e-05 60.2
26 TraesCS3B01G200300 chr1B 84.793 434 44 12 2186 2600 587024040 587024470 1.480000e-112 416.0
27 TraesCS3B01G200300 chr4B 80.451 532 69 20 2109 2613 103428160 103428683 9.040000e-100 374.0
28 TraesCS3B01G200300 chr7D 83.777 376 51 4 2308 2674 147753269 147753643 5.480000e-92 348.0
29 TraesCS3B01G200300 chr7D 76.959 434 70 19 1066 1479 633695407 633694984 1.250000e-53 220.0
30 TraesCS3B01G200300 chr7B 77.958 431 66 19 1069 1479 750391042 750390621 2.660000e-60 243.0
31 TraesCS3B01G200300 chr7A 77.804 428 66 18 1066 1473 732842273 732842691 1.240000e-58 237.0
32 TraesCS3B01G200300 chrUn 82.635 167 23 4 1546 1706 293324344 293324510 2.770000e-30 143.0
33 TraesCS3B01G200300 chrUn 82.635 167 23 4 1546 1706 389790915 389791081 2.770000e-30 143.0
34 TraesCS3B01G200300 chr5B 90.909 55 2 3 2109 2161 25204464 25204517 1.330000e-08 71.3
35 TraesCS3B01G200300 chr5A 91.667 48 2 2 2108 2153 267946980 267947027 6.180000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G200300 chr3B 228981982 228984655 2673 False 4939 4939 100.0000 1 2674 1 chr3B.!!$F1 2673
1 TraesCS3B01G200300 chr3B 229006078 229006939 861 False 569 569 79.3530 843 1706 1 chr3B.!!$F2 863
2 TraesCS3B01G200300 chr3A 170485410 170487095 1685 True 1130 1565 90.7940 450 2109 2 chr3A.!!$R2 1659
3 TraesCS3B01G200300 chr3A 170390404 170391046 642 True 566 566 82.9120 1047 1706 1 chr3A.!!$R1 659
4 TraesCS3B01G200300 chr3D 157659057 157660718 1661 False 1141 1413 92.2885 450 2103 2 chr3D.!!$F3 1653
5 TraesCS3B01G200300 chr3D 157750070 157750689 619 False 512 512 81.7220 1047 1706 1 chr3D.!!$F1 659
6 TraesCS3B01G200300 chr6D 438518367 438519099 732 False 374 374 77.0090 843 1629 1 chr6D.!!$F2 786
7 TraesCS3B01G200300 chr4B 103428160 103428683 523 False 374 374 80.4510 2109 2613 1 chr4B.!!$F1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
266 267 0.034186 TCTGCGCCCCTTCATCAATT 60.034 50.0 4.18 0.0 0.0 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2252 2386 0.040603 GGCGAGTACCGAGTAATCCG 60.041 60.0 7.77 0.0 41.76 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.771356 CGTCGTGGTGGCGTCGAT 62.771 66.667 0.00 0.00 43.57 3.59
34 35 3.179265 GTCGTGGTGGCGTCGATG 61.179 66.667 0.00 0.00 36.08 3.84
35 36 4.429212 TCGTGGTGGCGTCGATGG 62.429 66.667 6.79 0.00 0.00 3.51
50 51 4.966247 TGGCACAGAGACCTGGTA 57.034 55.556 0.00 0.00 44.60 3.25
51 52 2.362242 TGGCACAGAGACCTGGTAC 58.638 57.895 0.00 0.00 44.60 3.34
52 53 1.215647 GGCACAGAGACCTGGTACG 59.784 63.158 0.00 0.00 44.60 3.67
53 54 1.215647 GCACAGAGACCTGGTACGG 59.784 63.158 0.00 0.60 44.60 4.02
54 55 1.533469 GCACAGAGACCTGGTACGGT 61.533 60.000 0.00 1.27 44.60 4.83
55 56 1.830279 CACAGAGACCTGGTACGGTA 58.170 55.000 0.00 0.00 44.60 4.02
56 57 1.471684 CACAGAGACCTGGTACGGTAC 59.528 57.143 9.82 9.82 44.60 3.34
57 58 1.074405 ACAGAGACCTGGTACGGTACA 59.926 52.381 19.14 5.63 44.60 2.90
58 59 2.291411 ACAGAGACCTGGTACGGTACAT 60.291 50.000 19.14 2.42 44.60 2.29
59 60 2.099263 CAGAGACCTGGTACGGTACATG 59.901 54.545 19.14 10.79 35.59 3.21
60 61 0.822164 AGACCTGGTACGGTACATGC 59.178 55.000 19.14 3.67 35.59 4.06
61 62 0.533491 GACCTGGTACGGTACATGCA 59.467 55.000 19.14 7.88 35.59 3.96
62 63 0.978151 ACCTGGTACGGTACATGCAA 59.022 50.000 19.14 0.00 33.88 4.08
63 64 1.338389 ACCTGGTACGGTACATGCAAC 60.338 52.381 19.14 2.31 33.88 4.17
64 65 1.338294 CCTGGTACGGTACATGCAACA 60.338 52.381 19.14 6.57 0.00 3.33
65 66 1.999735 CTGGTACGGTACATGCAACAG 59.000 52.381 19.14 11.84 0.00 3.16
66 67 1.345089 TGGTACGGTACATGCAACAGT 59.655 47.619 19.14 9.04 0.00 3.55
67 68 2.561858 TGGTACGGTACATGCAACAGTA 59.438 45.455 19.14 7.42 0.00 2.74
68 69 2.925563 GGTACGGTACATGCAACAGTAC 59.074 50.000 22.72 22.72 39.80 2.73
69 70 2.823924 ACGGTACATGCAACAGTACA 57.176 45.000 21.40 0.00 41.74 2.90
70 71 2.683968 ACGGTACATGCAACAGTACAG 58.316 47.619 21.40 20.00 41.74 2.74
71 72 1.393539 CGGTACATGCAACAGTACAGC 59.606 52.381 21.40 9.92 41.74 4.40
72 73 2.699954 GGTACATGCAACAGTACAGCT 58.300 47.619 21.40 0.00 41.74 4.24
73 74 2.673368 GGTACATGCAACAGTACAGCTC 59.327 50.000 21.40 7.37 41.74 4.09
74 75 2.847327 ACATGCAACAGTACAGCTCT 57.153 45.000 0.00 0.00 0.00 4.09
75 76 2.420642 ACATGCAACAGTACAGCTCTG 58.579 47.619 0.00 0.00 38.68 3.35
76 77 2.037641 ACATGCAACAGTACAGCTCTGA 59.962 45.455 7.84 0.00 36.81 3.27
77 78 2.908688 TGCAACAGTACAGCTCTGAA 57.091 45.000 7.84 0.00 36.81 3.02
78 79 2.759191 TGCAACAGTACAGCTCTGAAG 58.241 47.619 7.84 1.57 36.81 3.02
79 80 2.365293 TGCAACAGTACAGCTCTGAAGA 59.635 45.455 7.84 0.00 36.81 2.87
80 81 3.007290 TGCAACAGTACAGCTCTGAAGAT 59.993 43.478 7.84 0.00 36.81 2.40
81 82 3.370366 GCAACAGTACAGCTCTGAAGATG 59.630 47.826 7.84 0.00 44.61 2.90
82 83 3.883830 ACAGTACAGCTCTGAAGATGG 57.116 47.619 7.84 0.00 43.33 3.51
83 84 3.169099 ACAGTACAGCTCTGAAGATGGT 58.831 45.455 7.84 0.00 43.33 3.55
84 85 3.580458 ACAGTACAGCTCTGAAGATGGTT 59.420 43.478 7.84 0.00 43.33 3.67
85 86 4.772624 ACAGTACAGCTCTGAAGATGGTTA 59.227 41.667 7.84 0.00 43.33 2.85
86 87 5.105554 ACAGTACAGCTCTGAAGATGGTTAG 60.106 44.000 7.84 0.00 43.33 2.34
87 88 5.020132 AGTACAGCTCTGAAGATGGTTAGT 58.980 41.667 3.60 0.00 43.33 2.24
88 89 4.199432 ACAGCTCTGAAGATGGTTAGTG 57.801 45.455 3.60 0.00 43.33 2.74
89 90 3.055530 ACAGCTCTGAAGATGGTTAGTGG 60.056 47.826 3.60 0.00 43.33 4.00
90 91 2.093235 AGCTCTGAAGATGGTTAGTGGC 60.093 50.000 0.00 0.00 0.00 5.01
91 92 2.355108 GCTCTGAAGATGGTTAGTGGCA 60.355 50.000 0.00 0.00 0.00 4.92
92 93 3.529533 CTCTGAAGATGGTTAGTGGCAG 58.470 50.000 0.00 0.00 0.00 4.85
93 94 2.237143 TCTGAAGATGGTTAGTGGCAGG 59.763 50.000 0.00 0.00 0.00 4.85
94 95 1.985159 TGAAGATGGTTAGTGGCAGGT 59.015 47.619 0.00 0.00 0.00 4.00
95 96 2.290260 TGAAGATGGTTAGTGGCAGGTG 60.290 50.000 0.00 0.00 0.00 4.00
96 97 0.620556 AGATGGTTAGTGGCAGGTGG 59.379 55.000 0.00 0.00 0.00 4.61
97 98 1.000896 ATGGTTAGTGGCAGGTGGC 60.001 57.895 0.00 0.00 43.74 5.01
98 99 1.500783 ATGGTTAGTGGCAGGTGGCT 61.501 55.000 5.03 0.00 44.01 4.75
99 100 1.675641 GGTTAGTGGCAGGTGGCTG 60.676 63.158 5.03 0.00 44.01 4.85
113 114 3.626472 GCTGCGACGGCCTTATAC 58.374 61.111 0.00 0.00 38.85 1.47
114 115 1.954651 GCTGCGACGGCCTTATACC 60.955 63.158 0.00 0.00 38.85 2.73
115 116 1.300697 CTGCGACGGCCTTATACCC 60.301 63.158 0.00 0.00 38.85 3.69
122 123 2.281553 GCCTTATACCCGGCAGGC 60.282 66.667 10.06 10.06 45.59 4.85
123 124 2.030562 CCTTATACCCGGCAGGCG 59.969 66.667 9.96 9.96 40.58 5.52
124 125 2.803817 CCTTATACCCGGCAGGCGT 61.804 63.158 16.17 0.00 40.58 5.68
125 126 1.300697 CTTATACCCGGCAGGCGTC 60.301 63.158 16.17 0.00 40.58 5.19
126 127 2.023414 CTTATACCCGGCAGGCGTCA 62.023 60.000 16.17 0.00 40.58 4.35
127 128 1.404479 TTATACCCGGCAGGCGTCAT 61.404 55.000 16.17 7.63 40.58 3.06
128 129 2.094757 TATACCCGGCAGGCGTCATG 62.095 60.000 16.17 3.40 40.58 3.07
132 133 3.803082 CGGCAGGCGTCATGGTTG 61.803 66.667 8.53 0.00 0.00 3.77
133 134 2.359850 GGCAGGCGTCATGGTTGA 60.360 61.111 0.00 0.00 0.00 3.18
134 135 2.401766 GGCAGGCGTCATGGTTGAG 61.402 63.158 0.00 0.00 30.85 3.02
135 136 2.401766 GCAGGCGTCATGGTTGAGG 61.402 63.158 0.00 0.00 40.05 3.86
136 137 1.296392 CAGGCGTCATGGTTGAGGA 59.704 57.895 0.00 0.00 39.56 3.71
137 138 0.742281 CAGGCGTCATGGTTGAGGAG 60.742 60.000 0.00 0.00 39.56 3.69
138 139 0.904865 AGGCGTCATGGTTGAGGAGA 60.905 55.000 0.00 0.00 39.56 3.71
139 140 0.460987 GGCGTCATGGTTGAGGAGAG 60.461 60.000 0.00 0.00 39.56 3.20
140 141 1.086634 GCGTCATGGTTGAGGAGAGC 61.087 60.000 0.00 0.00 39.56 4.09
141 142 0.803768 CGTCATGGTTGAGGAGAGCG 60.804 60.000 0.00 0.00 39.56 5.03
142 143 1.086634 GTCATGGTTGAGGAGAGCGC 61.087 60.000 0.00 0.00 30.85 5.92
143 144 1.817099 CATGGTTGAGGAGAGCGCC 60.817 63.158 2.29 0.00 0.00 6.53
144 145 3.376935 ATGGTTGAGGAGAGCGCCG 62.377 63.158 2.29 0.00 0.00 6.46
145 146 4.821589 GGTTGAGGAGAGCGCCGG 62.822 72.222 2.29 0.00 0.00 6.13
146 147 3.760035 GTTGAGGAGAGCGCCGGA 61.760 66.667 5.05 0.00 0.00 5.14
147 148 3.760035 TTGAGGAGAGCGCCGGAC 61.760 66.667 5.05 0.00 0.00 4.79
148 149 4.742649 TGAGGAGAGCGCCGGACT 62.743 66.667 5.05 0.00 0.00 3.85
149 150 4.200283 GAGGAGAGCGCCGGACTG 62.200 72.222 5.05 0.00 0.00 3.51
152 153 3.138798 GAGAGCGCCGGACTGGTA 61.139 66.667 5.05 0.00 41.21 3.25
153 154 3.127352 GAGAGCGCCGGACTGGTAG 62.127 68.421 5.05 0.00 41.21 3.18
154 155 4.208686 GAGCGCCGGACTGGTAGG 62.209 72.222 5.05 0.00 41.21 3.18
156 157 4.814294 GCGCCGGACTGGTAGGTG 62.814 72.222 5.05 4.62 41.21 4.00
157 158 4.814294 CGCCGGACTGGTAGGTGC 62.814 72.222 5.05 0.00 41.21 5.01
158 159 4.468689 GCCGGACTGGTAGGTGCC 62.469 72.222 5.05 0.00 41.21 5.01
159 160 3.782443 CCGGACTGGTAGGTGCCC 61.782 72.222 0.00 0.00 0.00 5.36
160 161 3.782443 CGGACTGGTAGGTGCCCC 61.782 72.222 0.00 0.00 0.00 5.80
161 162 2.609610 GGACTGGTAGGTGCCCCA 60.610 66.667 0.00 0.00 0.00 4.96
162 163 2.001269 GGACTGGTAGGTGCCCCAT 61.001 63.158 0.00 0.00 0.00 4.00
163 164 0.693092 GGACTGGTAGGTGCCCCATA 60.693 60.000 0.00 0.00 0.00 2.74
164 165 0.468648 GACTGGTAGGTGCCCCATAC 59.531 60.000 0.00 0.00 0.00 2.39
165 166 0.986550 ACTGGTAGGTGCCCCATACC 60.987 60.000 7.24 7.24 36.14 2.73
166 167 1.694882 TGGTAGGTGCCCCATACCC 60.695 63.158 10.66 0.00 39.05 3.69
167 168 2.814835 GGTAGGTGCCCCATACCCG 61.815 68.421 3.61 0.00 39.05 5.28
168 169 2.446994 TAGGTGCCCCATACCCGG 60.447 66.667 0.00 0.00 39.05 5.73
176 177 4.910585 CCATACCCGGCAGGCGTC 62.911 72.222 16.17 0.00 40.58 5.19
177 178 4.910585 CATACCCGGCAGGCGTCC 62.911 72.222 16.17 0.00 40.58 4.79
192 193 4.232905 TCCTGGTTGGGACCTCAG 57.767 61.111 0.00 0.00 46.66 3.35
193 194 1.538876 TCCTGGTTGGGACCTCAGG 60.539 63.158 15.03 15.03 46.66 3.86
194 195 1.847968 CCTGGTTGGGACCTCAGGT 60.848 63.158 0.00 0.00 46.66 4.00
209 210 6.449830 ACCTCAGGTCTTAAATGTTTAGGT 57.550 37.500 0.00 0.00 0.00 3.08
210 211 6.849151 ACCTCAGGTCTTAAATGTTTAGGTT 58.151 36.000 0.00 0.00 0.00 3.50
211 212 7.295340 ACCTCAGGTCTTAAATGTTTAGGTTT 58.705 34.615 0.00 0.00 0.00 3.27
212 213 7.230712 ACCTCAGGTCTTAAATGTTTAGGTTTG 59.769 37.037 0.00 0.00 0.00 2.93
213 214 7.309194 CCTCAGGTCTTAAATGTTTAGGTTTGG 60.309 40.741 0.00 0.00 0.00 3.28
214 215 6.015772 TCAGGTCTTAAATGTTTAGGTTTGGC 60.016 38.462 0.00 0.00 0.00 4.52
215 216 6.015434 CAGGTCTTAAATGTTTAGGTTTGGCT 60.015 38.462 0.00 0.00 0.00 4.75
216 217 6.015434 AGGTCTTAAATGTTTAGGTTTGGCTG 60.015 38.462 0.00 0.00 0.00 4.85
217 218 5.633601 GTCTTAAATGTTTAGGTTTGGCTGC 59.366 40.000 0.00 0.00 0.00 5.25
218 219 2.723124 AATGTTTAGGTTTGGCTGCG 57.277 45.000 0.00 0.00 0.00 5.18
219 220 1.904287 ATGTTTAGGTTTGGCTGCGA 58.096 45.000 0.00 0.00 0.00 5.10
220 221 1.904287 TGTTTAGGTTTGGCTGCGAT 58.096 45.000 0.00 0.00 0.00 4.58
221 222 1.539388 TGTTTAGGTTTGGCTGCGATG 59.461 47.619 0.00 0.00 0.00 3.84
222 223 1.539827 GTTTAGGTTTGGCTGCGATGT 59.460 47.619 0.00 0.00 0.00 3.06
223 224 1.448985 TTAGGTTTGGCTGCGATGTC 58.551 50.000 0.00 0.00 0.00 3.06
224 225 0.613260 TAGGTTTGGCTGCGATGTCT 59.387 50.000 0.00 0.00 0.00 3.41
225 226 0.957395 AGGTTTGGCTGCGATGTCTG 60.957 55.000 0.00 0.00 0.00 3.51
226 227 1.237285 GGTTTGGCTGCGATGTCTGT 61.237 55.000 0.00 0.00 0.00 3.41
227 228 0.593128 GTTTGGCTGCGATGTCTGTT 59.407 50.000 0.00 0.00 0.00 3.16
228 229 1.001378 GTTTGGCTGCGATGTCTGTTT 60.001 47.619 0.00 0.00 0.00 2.83
229 230 0.592637 TTGGCTGCGATGTCTGTTTG 59.407 50.000 0.00 0.00 0.00 2.93
230 231 1.236616 TGGCTGCGATGTCTGTTTGG 61.237 55.000 0.00 0.00 0.00 3.28
231 232 1.237285 GGCTGCGATGTCTGTTTGGT 61.237 55.000 0.00 0.00 0.00 3.67
232 233 1.438651 GCTGCGATGTCTGTTTGGTA 58.561 50.000 0.00 0.00 0.00 3.25
233 234 2.009774 GCTGCGATGTCTGTTTGGTAT 58.990 47.619 0.00 0.00 0.00 2.73
234 235 2.420022 GCTGCGATGTCTGTTTGGTATT 59.580 45.455 0.00 0.00 0.00 1.89
235 236 3.621268 GCTGCGATGTCTGTTTGGTATTA 59.379 43.478 0.00 0.00 0.00 0.98
236 237 4.260375 GCTGCGATGTCTGTTTGGTATTAG 60.260 45.833 0.00 0.00 0.00 1.73
237 238 4.188462 TGCGATGTCTGTTTGGTATTAGG 58.812 43.478 0.00 0.00 0.00 2.69
238 239 3.002348 GCGATGTCTGTTTGGTATTAGGC 59.998 47.826 0.00 0.00 0.00 3.93
239 240 3.560068 CGATGTCTGTTTGGTATTAGGCC 59.440 47.826 0.00 0.00 0.00 5.19
240 241 3.359695 TGTCTGTTTGGTATTAGGCCC 57.640 47.619 0.00 0.00 0.00 5.80
241 242 2.645297 TGTCTGTTTGGTATTAGGCCCA 59.355 45.455 0.00 0.00 0.00 5.36
242 243 3.279434 GTCTGTTTGGTATTAGGCCCAG 58.721 50.000 0.00 0.00 31.04 4.45
243 244 3.054655 GTCTGTTTGGTATTAGGCCCAGA 60.055 47.826 0.00 0.00 31.04 3.86
244 245 3.054655 TCTGTTTGGTATTAGGCCCAGAC 60.055 47.826 0.00 0.00 36.61 3.51
245 246 2.916934 TGTTTGGTATTAGGCCCAGACT 59.083 45.455 0.00 0.00 36.91 3.24
246 247 4.105577 TGTTTGGTATTAGGCCCAGACTA 58.894 43.478 0.00 0.00 36.91 2.59
247 248 4.724798 TGTTTGGTATTAGGCCCAGACTAT 59.275 41.667 0.00 0.00 36.91 2.12
248 249 5.163237 TGTTTGGTATTAGGCCCAGACTATC 60.163 44.000 0.00 0.00 36.91 2.08
249 250 4.487282 TGGTATTAGGCCCAGACTATCT 57.513 45.455 0.00 0.00 0.00 1.98
250 251 4.160329 TGGTATTAGGCCCAGACTATCTG 58.840 47.826 0.00 0.00 43.91 2.90
251 252 3.055747 GGTATTAGGCCCAGACTATCTGC 60.056 52.174 0.00 0.00 42.98 4.26
252 253 1.040646 TTAGGCCCAGACTATCTGCG 58.959 55.000 0.00 0.00 42.98 5.18
253 254 1.464376 TAGGCCCAGACTATCTGCGC 61.464 60.000 0.00 0.00 45.03 6.09
254 255 2.280457 GCCCAGACTATCTGCGCC 60.280 66.667 4.18 0.00 41.19 6.53
255 256 2.423446 CCCAGACTATCTGCGCCC 59.577 66.667 4.18 0.00 42.98 6.13
256 257 2.423446 CCAGACTATCTGCGCCCC 59.577 66.667 4.18 0.00 42.98 5.80
257 258 2.136878 CCAGACTATCTGCGCCCCT 61.137 63.158 4.18 0.00 42.98 4.79
258 259 1.690219 CCAGACTATCTGCGCCCCTT 61.690 60.000 4.18 0.00 42.98 3.95
259 260 0.249657 CAGACTATCTGCGCCCCTTC 60.250 60.000 4.18 0.00 37.72 3.46
260 261 0.687757 AGACTATCTGCGCCCCTTCA 60.688 55.000 4.18 0.00 0.00 3.02
261 262 0.394565 GACTATCTGCGCCCCTTCAT 59.605 55.000 4.18 0.00 0.00 2.57
262 263 0.394565 ACTATCTGCGCCCCTTCATC 59.605 55.000 4.18 0.00 0.00 2.92
263 264 0.394192 CTATCTGCGCCCCTTCATCA 59.606 55.000 4.18 0.00 0.00 3.07
264 265 0.836606 TATCTGCGCCCCTTCATCAA 59.163 50.000 4.18 0.00 0.00 2.57
265 266 0.184451 ATCTGCGCCCCTTCATCAAT 59.816 50.000 4.18 0.00 0.00 2.57
266 267 0.034186 TCTGCGCCCCTTCATCAATT 60.034 50.000 4.18 0.00 0.00 2.32
267 268 0.101759 CTGCGCCCCTTCATCAATTG 59.898 55.000 4.18 0.00 0.00 2.32
268 269 1.321805 TGCGCCCCTTCATCAATTGG 61.322 55.000 4.18 0.00 0.00 3.16
269 270 1.037030 GCGCCCCTTCATCAATTGGA 61.037 55.000 5.42 0.00 0.00 3.53
270 271 1.696063 CGCCCCTTCATCAATTGGAT 58.304 50.000 5.42 0.00 36.39 3.41
271 272 2.862541 CGCCCCTTCATCAATTGGATA 58.137 47.619 5.42 0.00 33.95 2.59
272 273 2.816087 CGCCCCTTCATCAATTGGATAG 59.184 50.000 5.42 0.00 33.95 2.08
273 274 3.160269 GCCCCTTCATCAATTGGATAGG 58.840 50.000 5.42 7.57 33.95 2.57
274 275 3.437052 GCCCCTTCATCAATTGGATAGGT 60.437 47.826 5.42 0.00 32.05 3.08
275 276 4.147321 CCCCTTCATCAATTGGATAGGTG 58.853 47.826 5.42 0.00 32.05 4.00
276 277 4.386761 CCCCTTCATCAATTGGATAGGTGT 60.387 45.833 5.42 0.00 32.05 4.16
277 278 5.163099 CCCCTTCATCAATTGGATAGGTGTA 60.163 44.000 5.42 0.00 32.05 2.90
278 279 6.000219 CCCTTCATCAATTGGATAGGTGTAG 59.000 44.000 5.42 0.09 32.05 2.74
279 280 5.471456 CCTTCATCAATTGGATAGGTGTAGC 59.529 44.000 5.42 0.00 33.95 3.58
280 281 4.631131 TCATCAATTGGATAGGTGTAGCG 58.369 43.478 5.42 0.00 33.95 4.26
281 282 4.343814 TCATCAATTGGATAGGTGTAGCGA 59.656 41.667 5.42 0.00 33.95 4.93
282 283 4.054780 TCAATTGGATAGGTGTAGCGAC 57.945 45.455 5.42 0.00 0.00 5.19
283 284 3.449377 TCAATTGGATAGGTGTAGCGACA 59.551 43.478 5.42 0.00 0.00 4.35
284 285 4.081365 TCAATTGGATAGGTGTAGCGACAA 60.081 41.667 5.42 0.00 37.31 3.18
285 286 4.689612 ATTGGATAGGTGTAGCGACAAT 57.310 40.909 0.00 0.00 37.31 2.71
286 287 4.481368 TTGGATAGGTGTAGCGACAATT 57.519 40.909 0.00 0.00 37.31 2.32
287 288 3.792401 TGGATAGGTGTAGCGACAATTG 58.208 45.455 0.00 3.24 37.31 2.32
288 289 3.196901 TGGATAGGTGTAGCGACAATTGT 59.803 43.478 11.78 11.78 37.31 2.71
289 290 4.189231 GGATAGGTGTAGCGACAATTGTT 58.811 43.478 13.36 0.00 37.31 2.83
290 291 4.034048 GGATAGGTGTAGCGACAATTGTTG 59.966 45.833 19.84 19.84 37.31 3.33
299 300 3.103793 CGACAATTGTTGCTTAGACGG 57.896 47.619 13.36 0.00 0.00 4.79
300 301 2.478894 CGACAATTGTTGCTTAGACGGT 59.521 45.455 13.36 0.00 0.00 4.83
301 302 3.664276 CGACAATTGTTGCTTAGACGGTG 60.664 47.826 13.36 0.00 0.00 4.94
302 303 2.552315 ACAATTGTTGCTTAGACGGTGG 59.448 45.455 4.92 0.00 0.00 4.61
303 304 1.165270 ATTGTTGCTTAGACGGTGGC 58.835 50.000 0.00 0.00 0.00 5.01
304 305 0.107831 TTGTTGCTTAGACGGTGGCT 59.892 50.000 0.00 0.00 0.00 4.75
305 306 0.107831 TGTTGCTTAGACGGTGGCTT 59.892 50.000 0.00 0.00 0.00 4.35
306 307 1.235724 GTTGCTTAGACGGTGGCTTT 58.764 50.000 0.00 0.00 0.00 3.51
307 308 2.224329 TGTTGCTTAGACGGTGGCTTTA 60.224 45.455 0.00 0.00 0.00 1.85
308 309 2.380084 TGCTTAGACGGTGGCTTTAG 57.620 50.000 0.00 0.00 0.00 1.85
309 310 1.621814 TGCTTAGACGGTGGCTTTAGT 59.378 47.619 0.00 0.00 0.00 2.24
310 311 2.269172 GCTTAGACGGTGGCTTTAGTC 58.731 52.381 0.00 0.00 0.00 2.59
311 312 2.094130 GCTTAGACGGTGGCTTTAGTCT 60.094 50.000 9.53 9.53 44.90 3.24
312 313 3.616802 GCTTAGACGGTGGCTTTAGTCTT 60.617 47.826 9.79 0.00 42.99 3.01
313 314 4.381292 GCTTAGACGGTGGCTTTAGTCTTA 60.381 45.833 9.79 2.50 42.99 2.10
314 315 3.589495 AGACGGTGGCTTTAGTCTTAC 57.411 47.619 0.00 0.00 40.64 2.34
315 316 3.163467 AGACGGTGGCTTTAGTCTTACT 58.837 45.455 0.00 0.00 40.64 2.24
316 317 3.056749 AGACGGTGGCTTTAGTCTTACTG 60.057 47.826 0.00 0.00 40.64 2.74
317 318 2.631545 ACGGTGGCTTTAGTCTTACTGT 59.368 45.455 0.00 0.00 0.00 3.55
318 319 3.070590 ACGGTGGCTTTAGTCTTACTGTT 59.929 43.478 0.00 0.00 0.00 3.16
319 320 3.432252 CGGTGGCTTTAGTCTTACTGTTG 59.568 47.826 0.00 0.00 0.00 3.33
320 321 4.386711 GGTGGCTTTAGTCTTACTGTTGT 58.613 43.478 0.00 0.00 0.00 3.32
321 322 5.544650 GGTGGCTTTAGTCTTACTGTTGTA 58.455 41.667 0.00 0.00 0.00 2.41
322 323 6.171213 GGTGGCTTTAGTCTTACTGTTGTAT 58.829 40.000 0.00 0.00 0.00 2.29
323 324 6.092259 GGTGGCTTTAGTCTTACTGTTGTATG 59.908 42.308 0.00 0.00 0.00 2.39
324 325 6.872020 GTGGCTTTAGTCTTACTGTTGTATGA 59.128 38.462 0.00 0.00 32.61 2.15
325 326 6.872020 TGGCTTTAGTCTTACTGTTGTATGAC 59.128 38.462 11.70 11.70 45.97 3.06
334 335 8.709646 GTCTTACTGTTGTATGACTTTGTAAGG 58.290 37.037 0.00 0.00 44.06 2.69
335 336 8.426489 TCTTACTGTTGTATGACTTTGTAAGGT 58.574 33.333 0.00 0.00 37.36 3.50
336 337 8.597662 TTACTGTTGTATGACTTTGTAAGGTC 57.402 34.615 0.44 0.44 0.00 3.85
337 338 6.827727 ACTGTTGTATGACTTTGTAAGGTCT 58.172 36.000 8.11 0.00 34.01 3.85
338 339 7.280356 ACTGTTGTATGACTTTGTAAGGTCTT 58.720 34.615 8.11 4.91 34.01 3.01
339 340 7.226720 ACTGTTGTATGACTTTGTAAGGTCTTG 59.773 37.037 8.11 0.00 34.01 3.02
340 341 7.051623 TGTTGTATGACTTTGTAAGGTCTTGT 58.948 34.615 8.11 0.00 34.01 3.16
341 342 7.011950 TGTTGTATGACTTTGTAAGGTCTTGTG 59.988 37.037 8.11 0.00 34.01 3.33
342 343 6.822442 TGTATGACTTTGTAAGGTCTTGTGA 58.178 36.000 8.11 0.00 34.01 3.58
343 344 6.929049 TGTATGACTTTGTAAGGTCTTGTGAG 59.071 38.462 8.11 0.00 34.01 3.51
344 345 5.607939 TGACTTTGTAAGGTCTTGTGAGA 57.392 39.130 8.11 0.00 34.01 3.27
345 346 5.984725 TGACTTTGTAAGGTCTTGTGAGAA 58.015 37.500 8.11 0.00 32.66 2.87
346 347 6.591935 TGACTTTGTAAGGTCTTGTGAGAAT 58.408 36.000 8.11 0.00 32.66 2.40
347 348 7.732025 TGACTTTGTAAGGTCTTGTGAGAATA 58.268 34.615 8.11 0.00 32.66 1.75
348 349 8.208224 TGACTTTGTAAGGTCTTGTGAGAATAA 58.792 33.333 8.11 0.00 32.66 1.40
349 350 9.220767 GACTTTGTAAGGTCTTGTGAGAATAAT 57.779 33.333 0.23 0.00 32.66 1.28
350 351 9.574516 ACTTTGTAAGGTCTTGTGAGAATAATT 57.425 29.630 0.00 0.00 32.66 1.40
373 374 7.922505 TTAATAAAATGGTTGTATGCATCGC 57.077 32.000 0.19 0.00 0.00 4.58
374 375 5.772825 ATAAAATGGTTGTATGCATCGCT 57.227 34.783 0.19 0.00 0.00 4.93
375 376 3.698029 AAATGGTTGTATGCATCGCTC 57.302 42.857 0.19 0.00 0.00 5.03
376 377 2.330440 ATGGTTGTATGCATCGCTCA 57.670 45.000 0.19 0.00 0.00 4.26
377 378 1.655484 TGGTTGTATGCATCGCTCAG 58.345 50.000 0.19 0.00 0.00 3.35
378 379 1.206849 TGGTTGTATGCATCGCTCAGA 59.793 47.619 0.19 0.00 0.00 3.27
379 380 2.158914 TGGTTGTATGCATCGCTCAGAT 60.159 45.455 0.19 0.00 41.01 2.90
387 388 1.069427 ATCGCTCAGATGCAGAGGC 59.931 57.895 3.87 0.00 38.36 4.70
388 389 2.380433 ATCGCTCAGATGCAGAGGCC 62.380 60.000 0.00 0.00 38.36 5.19
389 390 2.588314 GCTCAGATGCAGAGGCCG 60.588 66.667 0.00 0.00 40.13 6.13
390 391 2.108566 CTCAGATGCAGAGGCCGG 59.891 66.667 0.00 0.00 40.13 6.13
391 392 3.457625 CTCAGATGCAGAGGCCGGG 62.458 68.421 2.18 0.00 40.13 5.73
392 393 3.473647 CAGATGCAGAGGCCGGGA 61.474 66.667 2.18 0.00 40.13 5.14
393 394 3.160047 AGATGCAGAGGCCGGGAG 61.160 66.667 2.18 0.00 40.13 4.30
394 395 3.474570 GATGCAGAGGCCGGGAGT 61.475 66.667 2.18 0.00 40.13 3.85
395 396 3.453070 GATGCAGAGGCCGGGAGTC 62.453 68.421 2.18 0.00 40.13 3.36
397 398 3.474570 GCAGAGGCCGGGAGTCAT 61.475 66.667 2.18 0.00 0.00 3.06
398 399 2.818132 CAGAGGCCGGGAGTCATC 59.182 66.667 2.18 0.00 0.00 2.92
399 400 2.444895 AGAGGCCGGGAGTCATCC 60.445 66.667 2.18 0.00 45.85 3.51
400 401 2.444895 GAGGCCGGGAGTCATCCT 60.445 66.667 2.18 0.00 45.85 3.24
401 402 2.041265 AGGCCGGGAGTCATCCTT 59.959 61.111 2.18 0.00 45.85 3.36
402 403 2.034048 GAGGCCGGGAGTCATCCTTC 62.034 65.000 2.18 0.00 45.85 3.46
403 404 2.066999 GGCCGGGAGTCATCCTTCT 61.067 63.158 2.18 0.00 45.85 2.85
404 405 1.627297 GGCCGGGAGTCATCCTTCTT 61.627 60.000 2.18 0.00 45.85 2.52
405 406 0.253327 GCCGGGAGTCATCCTTCTTT 59.747 55.000 2.18 0.00 45.85 2.52
406 407 1.340114 GCCGGGAGTCATCCTTCTTTT 60.340 52.381 2.18 0.00 45.85 2.27
407 408 2.633488 CCGGGAGTCATCCTTCTTTTC 58.367 52.381 0.00 0.00 45.85 2.29
408 409 2.237392 CCGGGAGTCATCCTTCTTTTCT 59.763 50.000 0.00 0.00 45.85 2.52
409 410 3.451178 CCGGGAGTCATCCTTCTTTTCTA 59.549 47.826 0.00 0.00 45.85 2.10
410 411 4.081087 CCGGGAGTCATCCTTCTTTTCTAA 60.081 45.833 0.00 0.00 45.85 2.10
411 412 5.488341 CGGGAGTCATCCTTCTTTTCTAAA 58.512 41.667 0.00 0.00 45.85 1.85
412 413 5.938125 CGGGAGTCATCCTTCTTTTCTAAAA 59.062 40.000 0.00 0.00 45.85 1.52
413 414 6.430000 CGGGAGTCATCCTTCTTTTCTAAAAA 59.570 38.462 0.00 0.00 45.85 1.94
445 446 7.790861 CGAAAGCATTTTTCGGTTAATAACT 57.209 32.000 12.72 0.00 45.17 2.24
446 447 8.883789 CGAAAGCATTTTTCGGTTAATAACTA 57.116 30.769 12.72 0.00 45.17 2.24
447 448 8.782327 CGAAAGCATTTTTCGGTTAATAACTAC 58.218 33.333 12.72 0.00 45.17 2.73
448 449 9.836076 GAAAGCATTTTTCGGTTAATAACTACT 57.164 29.630 2.96 0.00 39.27 2.57
537 539 7.088905 GCATTTGAGTTGACTTGATTTCTCAT 58.911 34.615 0.00 0.00 33.10 2.90
538 540 7.597743 GCATTTGAGTTGACTTGATTTCTCATT 59.402 33.333 0.00 0.00 33.10 2.57
539 541 9.472361 CATTTGAGTTGACTTGATTTCTCATTT 57.528 29.630 0.00 0.00 33.10 2.32
541 543 9.520204 TTTGAGTTGACTTGATTTCTCATTTTC 57.480 29.630 0.00 0.00 33.10 2.29
542 544 8.455903 TGAGTTGACTTGATTTCTCATTTTCT 57.544 30.769 0.00 0.00 0.00 2.52
543 545 8.562892 TGAGTTGACTTGATTTCTCATTTTCTC 58.437 33.333 0.00 0.00 0.00 2.87
544 546 7.579726 AGTTGACTTGATTTCTCATTTTCTCG 58.420 34.615 0.00 0.00 0.00 4.04
611 613 0.320421 ACATACGCGGAGTTGCTGTT 60.320 50.000 12.47 0.00 0.00 3.16
665 670 2.430694 GTGTTGGAACTTCAAAAGGCCT 59.569 45.455 0.00 0.00 0.00 5.19
798 804 6.485984 CCAGTAGCAGCAGAATGATTAGATTT 59.514 38.462 0.00 0.00 39.69 2.17
926 942 6.094603 GGCATTTCTCACATAACTTCAGACAT 59.905 38.462 0.00 0.00 0.00 3.06
933 949 5.863935 TCACATAACTTCAGACATCGTCTTG 59.136 40.000 0.00 0.00 41.37 3.02
934 950 4.627467 ACATAACTTCAGACATCGTCTTGC 59.373 41.667 0.00 0.00 41.37 4.01
937 953 2.266554 CTTCAGACATCGTCTTGCTCC 58.733 52.381 0.00 0.00 41.37 4.70
1077 1139 9.448438 TGTACTGAATATATGCTTGTGTTTTCT 57.552 29.630 0.00 0.00 0.00 2.52
1081 1143 9.713740 CTGAATATATGCTTGTGTTTTCTCTTC 57.286 33.333 0.00 0.00 0.00 2.87
1198 1270 3.189606 TCTCTCTCTGACTCTCCTTCCT 58.810 50.000 0.00 0.00 0.00 3.36
1199 1271 3.054434 TCTCTCTCTGACTCTCCTTCCTG 60.054 52.174 0.00 0.00 0.00 3.86
1200 1272 2.647299 TCTCTCTGACTCTCCTTCCTGT 59.353 50.000 0.00 0.00 0.00 4.00
1201 1273 2.754552 CTCTCTGACTCTCCTTCCTGTG 59.245 54.545 0.00 0.00 0.00 3.66
1202 1274 2.376855 TCTCTGACTCTCCTTCCTGTGA 59.623 50.000 0.00 0.00 0.00 3.58
1221 1297 3.133721 GTGATCCTGTCTATCTTGCACCT 59.866 47.826 0.00 0.00 0.00 4.00
1412 1491 1.734655 AGCCCAAGGAGAAGAAGACA 58.265 50.000 0.00 0.00 0.00 3.41
1687 1805 1.304713 AGTAGAGGTCGCCCGGAAA 60.305 57.895 0.73 0.00 35.12 3.13
1798 1923 8.955388 TGTGTGTTTAGTACCGTAGTTCATATA 58.045 33.333 0.00 0.00 0.00 0.86
1916 2041 9.352784 CTCTGTTGTTTCTCATAAACAAACAAA 57.647 29.630 15.39 5.28 46.34 2.83
1917 2042 9.698309 TCTGTTGTTTCTCATAAACAAACAAAA 57.302 25.926 15.39 5.30 46.34 2.44
1964 2094 2.148768 ACGAACCGAAGAAATTGGTCC 58.851 47.619 0.00 0.00 45.83 4.46
1966 2096 1.816835 GAACCGAAGAAATTGGTCCCC 59.183 52.381 0.00 0.00 45.83 4.81
2106 2240 7.093814 ATGTTAATCATTGGAGCTTTGTGCTTA 60.094 33.333 0.00 0.00 42.54 3.09
2187 2321 5.670792 AACCACCGTTGACATTATAGAGA 57.329 39.130 0.00 0.00 0.00 3.10
2195 2329 8.308931 ACCGTTGACATTATAGAGAGTTAAACA 58.691 33.333 0.00 0.00 0.00 2.83
2196 2330 8.592998 CCGTTGACATTATAGAGAGTTAAACAC 58.407 37.037 0.00 0.00 0.00 3.32
2209 2343 8.531982 AGAGAGTTAAACACTACAATAGCATCA 58.468 33.333 0.00 0.00 35.01 3.07
2213 2347 8.512138 AGTTAAACACTACAATAGCATCAAACC 58.488 33.333 0.00 0.00 31.97 3.27
2220 2354 2.128771 ATAGCATCAAACCACGCCTT 57.871 45.000 0.00 0.00 0.00 4.35
2223 2357 0.313672 GCATCAAACCACGCCTTCAA 59.686 50.000 0.00 0.00 0.00 2.69
2225 2359 1.608590 CATCAAACCACGCCTTCAACT 59.391 47.619 0.00 0.00 0.00 3.16
2237 2371 0.951040 CTTCAACTCACCGCTCCACC 60.951 60.000 0.00 0.00 0.00 4.61
2238 2372 1.407656 TTCAACTCACCGCTCCACCT 61.408 55.000 0.00 0.00 0.00 4.00
2239 2373 0.541063 TCAACTCACCGCTCCACCTA 60.541 55.000 0.00 0.00 0.00 3.08
2242 2376 0.830444 ACTCACCGCTCCACCTACAA 60.830 55.000 0.00 0.00 0.00 2.41
2243 2377 0.537188 CTCACCGCTCCACCTACAAT 59.463 55.000 0.00 0.00 0.00 2.71
2247 2381 1.206371 ACCGCTCCACCTACAATACAC 59.794 52.381 0.00 0.00 0.00 2.90
2249 2383 2.540515 CGCTCCACCTACAATACACAG 58.459 52.381 0.00 0.00 0.00 3.66
2251 2385 3.368013 CGCTCCACCTACAATACACAGAA 60.368 47.826 0.00 0.00 0.00 3.02
2252 2386 3.933332 GCTCCACCTACAATACACAGAAC 59.067 47.826 0.00 0.00 0.00 3.01
2254 2388 3.056393 TCCACCTACAATACACAGAACGG 60.056 47.826 0.00 0.00 0.00 4.44
2255 2389 3.056393 CCACCTACAATACACAGAACGGA 60.056 47.826 0.00 0.00 0.00 4.69
2256 2390 4.382685 CCACCTACAATACACAGAACGGAT 60.383 45.833 0.00 0.00 0.00 4.18
2257 2391 5.175859 CACCTACAATACACAGAACGGATT 58.824 41.667 0.00 0.00 0.00 3.01
2259 2393 6.255020 CACCTACAATACACAGAACGGATTAC 59.745 42.308 0.00 0.00 0.00 1.89
2260 2394 6.154021 ACCTACAATACACAGAACGGATTACT 59.846 38.462 0.00 0.00 0.00 2.24
2261 2395 6.696148 CCTACAATACACAGAACGGATTACTC 59.304 42.308 0.00 0.00 0.00 2.59
2262 2396 5.100259 ACAATACACAGAACGGATTACTCG 58.900 41.667 0.00 0.00 0.00 4.18
2267 2415 3.128242 CACAGAACGGATTACTCGGTACT 59.872 47.826 0.00 0.00 34.18 2.73
2270 2418 0.659957 ACGGATTACTCGGTACTCGC 59.340 55.000 0.00 0.00 39.05 5.03
2277 2425 4.682334 TCGGTACTCGCCCACCCA 62.682 66.667 0.00 0.00 39.05 4.51
2282 2430 1.534476 TACTCGCCCACCCAGACAA 60.534 57.895 0.00 0.00 0.00 3.18
2283 2431 1.823169 TACTCGCCCACCCAGACAAC 61.823 60.000 0.00 0.00 0.00 3.32
2294 2442 2.752903 ACCCAGACAACAACTCAAACAC 59.247 45.455 0.00 0.00 0.00 3.32
2295 2443 2.752354 CCCAGACAACAACTCAAACACA 59.248 45.455 0.00 0.00 0.00 3.72
2303 2451 5.827797 ACAACAACTCAAACACACTATCCAT 59.172 36.000 0.00 0.00 0.00 3.41
2305 2453 6.560253 ACAACTCAAACACACTATCCATTC 57.440 37.500 0.00 0.00 0.00 2.67
2308 2456 3.006940 TCAAACACACTATCCATTCCGC 58.993 45.455 0.00 0.00 0.00 5.54
2311 2459 0.469917 CACACTATCCATTCCGCCCT 59.530 55.000 0.00 0.00 0.00 5.19
2319 2467 0.527565 CCATTCCGCCCTTTCAACAG 59.472 55.000 0.00 0.00 0.00 3.16
2326 2474 2.680913 CCCTTTCAACAGGCTCGCG 61.681 63.158 0.00 0.00 31.69 5.87
2346 2494 0.250901 TGCTGCCAAACTCTTCCCTC 60.251 55.000 0.00 0.00 0.00 4.30
2347 2495 1.301677 GCTGCCAAACTCTTCCCTCG 61.302 60.000 0.00 0.00 0.00 4.63
2348 2496 0.321671 CTGCCAAACTCTTCCCTCGA 59.678 55.000 0.00 0.00 0.00 4.04
2349 2497 0.034896 TGCCAAACTCTTCCCTCGAC 59.965 55.000 0.00 0.00 0.00 4.20
2358 2506 2.294097 CTTCCCTCGACGACGACTCG 62.294 65.000 5.75 0.91 43.81 4.18
2359 2507 2.770132 TTCCCTCGACGACGACTCGA 62.770 60.000 5.75 6.09 43.06 4.04
2365 2513 1.132232 GACGACGACTCGACTGACC 59.868 63.158 5.20 0.00 43.06 4.02
2374 2522 0.896019 CTCGACTGACCACCACCTCT 60.896 60.000 0.00 0.00 0.00 3.69
2389 2537 3.790691 CTCTAGAGACGGAGAGGCA 57.209 57.895 15.05 0.00 36.36 4.75
2401 2549 3.595691 AGAGGCACTGTCAAAGACG 57.404 52.632 0.00 0.00 41.55 4.18
2461 2618 0.902531 CCCTCAACTCCTTCGGCTTA 59.097 55.000 0.00 0.00 0.00 3.09
2469 2626 0.901827 TCCTTCGGCTTATGCACTCA 59.098 50.000 2.72 0.00 41.91 3.41
2483 2640 1.154016 ACTCATGTCGTTCTCGCCG 60.154 57.895 0.00 0.00 36.96 6.46
2497 2654 3.443045 GCCGCACACCATCCCTTG 61.443 66.667 0.00 0.00 0.00 3.61
2511 2668 3.322466 CTTGAGGGCGTCCTGGGT 61.322 66.667 16.74 0.00 45.05 4.51
2513 2670 4.631740 TGAGGGCGTCCTGGGTCA 62.632 66.667 16.74 1.15 45.05 4.02
2516 2673 4.489771 GGGCGTCCTGGGTCATGG 62.490 72.222 0.00 0.00 0.00 3.66
2518 2675 3.399181 GCGTCCTGGGTCATGGGA 61.399 66.667 0.00 0.00 0.00 4.37
2542 2699 5.489278 AGACCATTCTAGTTTTCCTAAGGCT 59.511 40.000 0.00 0.00 0.00 4.58
2545 2702 6.180472 CCATTCTAGTTTTCCTAAGGCTGAA 58.820 40.000 0.00 0.00 0.00 3.02
2550 2707 4.532834 AGTTTTCCTAAGGCTGAACACAA 58.467 39.130 5.50 0.00 0.00 3.33
2551 2708 5.140454 AGTTTTCCTAAGGCTGAACACAAT 58.860 37.500 5.50 0.00 0.00 2.71
2575 2732 4.998671 TCTCCACATTGTTCTTGCAAAA 57.001 36.364 0.00 0.00 31.63 2.44
2602 2759 6.283694 GCAAGTCAGTAGGATGTGATCAATA 58.716 40.000 0.00 0.00 0.00 1.90
2613 2770 5.994668 GGATGTGATCAATAGTTTCCTCCTC 59.005 44.000 0.00 0.00 0.00 3.71
2614 2771 5.359194 TGTGATCAATAGTTTCCTCCTCC 57.641 43.478 0.00 0.00 0.00 4.30
2615 2772 5.032846 TGTGATCAATAGTTTCCTCCTCCT 58.967 41.667 0.00 0.00 0.00 3.69
2616 2773 6.202331 TGTGATCAATAGTTTCCTCCTCCTA 58.798 40.000 0.00 0.00 0.00 2.94
2617 2774 6.325028 TGTGATCAATAGTTTCCTCCTCCTAG 59.675 42.308 0.00 0.00 0.00 3.02
2618 2775 6.325286 GTGATCAATAGTTTCCTCCTCCTAGT 59.675 42.308 0.00 0.00 0.00 2.57
2619 2776 6.551601 TGATCAATAGTTTCCTCCTCCTAGTC 59.448 42.308 0.00 0.00 0.00 2.59
2620 2777 5.838955 TCAATAGTTTCCTCCTCCTAGTCA 58.161 41.667 0.00 0.00 0.00 3.41
2621 2778 5.657302 TCAATAGTTTCCTCCTCCTAGTCAC 59.343 44.000 0.00 0.00 0.00 3.67
2622 2779 3.544698 AGTTTCCTCCTCCTAGTCACA 57.455 47.619 0.00 0.00 0.00 3.58
2623 2780 3.436243 AGTTTCCTCCTCCTAGTCACAG 58.564 50.000 0.00 0.00 0.00 3.66
2624 2781 3.076182 AGTTTCCTCCTCCTAGTCACAGA 59.924 47.826 0.00 0.00 0.00 3.41
2625 2782 3.827817 TTCCTCCTCCTAGTCACAGAA 57.172 47.619 0.00 0.00 0.00 3.02
2626 2783 3.827817 TCCTCCTCCTAGTCACAGAAA 57.172 47.619 0.00 0.00 0.00 2.52
2627 2784 3.702792 TCCTCCTCCTAGTCACAGAAAG 58.297 50.000 0.00 0.00 0.00 2.62
2628 2785 2.763448 CCTCCTCCTAGTCACAGAAAGG 59.237 54.545 0.00 0.00 0.00 3.11
2629 2786 3.564571 CCTCCTCCTAGTCACAGAAAGGA 60.565 52.174 0.00 0.00 36.69 3.36
2630 2787 3.432378 TCCTCCTAGTCACAGAAAGGAC 58.568 50.000 0.00 0.00 34.45 3.85
2631 2788 3.165875 CCTCCTAGTCACAGAAAGGACA 58.834 50.000 0.00 0.00 36.50 4.02
2632 2789 3.056465 CCTCCTAGTCACAGAAAGGACAC 60.056 52.174 0.00 0.00 36.50 3.67
2633 2790 2.557056 TCCTAGTCACAGAAAGGACACG 59.443 50.000 0.00 0.00 36.50 4.49
2634 2791 2.329379 CTAGTCACAGAAAGGACACGC 58.671 52.381 0.00 0.00 36.50 5.34
2635 2792 0.464036 AGTCACAGAAAGGACACGCA 59.536 50.000 0.00 0.00 36.50 5.24
2636 2793 1.070758 AGTCACAGAAAGGACACGCAT 59.929 47.619 0.00 0.00 36.50 4.73
2637 2794 1.461127 GTCACAGAAAGGACACGCATC 59.539 52.381 0.00 0.00 34.22 3.91
2638 2795 1.344438 TCACAGAAAGGACACGCATCT 59.656 47.619 0.00 0.00 0.00 2.90
2639 2796 2.146342 CACAGAAAGGACACGCATCTT 58.854 47.619 0.00 0.00 0.00 2.40
2640 2797 2.096069 CACAGAAAGGACACGCATCTTG 60.096 50.000 0.00 0.00 0.00 3.02
2641 2798 2.224281 ACAGAAAGGACACGCATCTTGA 60.224 45.455 0.00 0.00 0.00 3.02
2642 2799 3.005554 CAGAAAGGACACGCATCTTGAT 58.994 45.455 0.00 0.00 0.00 2.57
2643 2800 3.005554 AGAAAGGACACGCATCTTGATG 58.994 45.455 6.27 6.27 0.00 3.07
2644 2801 1.089920 AAGGACACGCATCTTGATGC 58.910 50.000 21.67 21.67 43.72 3.91
2653 2810 2.362736 GCATCTTGATGCAGAAGTCCA 58.637 47.619 25.23 0.00 46.25 4.02
2654 2811 2.950309 GCATCTTGATGCAGAAGTCCAT 59.050 45.455 25.23 0.00 46.25 3.41
2655 2812 3.243101 GCATCTTGATGCAGAAGTCCATG 60.243 47.826 25.23 6.25 46.25 3.66
2656 2813 3.708403 TCTTGATGCAGAAGTCCATGT 57.292 42.857 7.86 0.00 0.00 3.21
2657 2814 3.603532 TCTTGATGCAGAAGTCCATGTC 58.396 45.455 7.86 0.00 0.00 3.06
2658 2815 2.014335 TGATGCAGAAGTCCATGTCG 57.986 50.000 0.00 0.00 0.00 4.35
2659 2816 1.293924 GATGCAGAAGTCCATGTCGG 58.706 55.000 0.00 0.00 0.00 4.79
2660 2817 0.107508 ATGCAGAAGTCCATGTCGGG 60.108 55.000 0.00 0.00 34.36 5.14
2661 2818 2.109126 GCAGAAGTCCATGTCGGGC 61.109 63.158 0.00 0.00 41.10 6.13
2666 2823 2.202756 GTCCATGTCGGGCGAGTC 60.203 66.667 0.00 0.00 34.36 3.36
2667 2824 3.822192 TCCATGTCGGGCGAGTCG 61.822 66.667 8.54 8.54 34.36 4.18
2668 2825 4.873129 CCATGTCGGGCGAGTCGG 62.873 72.222 15.52 0.00 0.00 4.79
2669 2826 4.129737 CATGTCGGGCGAGTCGGT 62.130 66.667 15.52 0.00 0.00 4.69
2670 2827 3.823330 ATGTCGGGCGAGTCGGTC 61.823 66.667 15.52 0.00 0.00 4.79
2672 2829 4.477975 GTCGGGCGAGTCGGTCAG 62.478 72.222 15.52 0.00 0.00 3.51
2673 2830 4.710167 TCGGGCGAGTCGGTCAGA 62.710 66.667 15.52 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.179265 CATCGACGCCACCACGAC 61.179 66.667 0.00 0.00 38.79 4.34
18 19 4.429212 CCATCGACGCCACCACGA 62.429 66.667 0.00 0.00 40.18 4.35
23 24 3.490759 CTGTGCCATCGACGCCAC 61.491 66.667 4.01 4.38 0.00 5.01
24 25 3.647649 CTCTGTGCCATCGACGCCA 62.648 63.158 4.01 1.73 0.00 5.69
25 26 2.887568 CTCTGTGCCATCGACGCC 60.888 66.667 4.01 0.00 0.00 5.68
26 27 2.161486 GTCTCTGTGCCATCGACGC 61.161 63.158 0.00 0.00 0.00 5.19
27 28 1.517257 GGTCTCTGTGCCATCGACG 60.517 63.158 0.00 0.00 0.00 5.12
28 29 0.459237 CAGGTCTCTGTGCCATCGAC 60.459 60.000 0.00 0.00 36.30 4.20
29 30 1.607801 CCAGGTCTCTGTGCCATCGA 61.608 60.000 0.00 0.00 39.31 3.59
30 31 1.153489 CCAGGTCTCTGTGCCATCG 60.153 63.158 0.00 0.00 39.31 3.84
31 32 1.134670 GTACCAGGTCTCTGTGCCATC 60.135 57.143 0.00 0.00 39.31 3.51
32 33 0.905357 GTACCAGGTCTCTGTGCCAT 59.095 55.000 0.00 0.00 39.31 4.40
33 34 1.532604 CGTACCAGGTCTCTGTGCCA 61.533 60.000 0.00 0.00 39.31 4.92
34 35 1.215647 CGTACCAGGTCTCTGTGCC 59.784 63.158 0.00 0.00 39.31 5.01
35 36 1.215647 CCGTACCAGGTCTCTGTGC 59.784 63.158 0.00 0.00 39.31 4.57
36 37 1.471684 GTACCGTACCAGGTCTCTGTG 59.528 57.143 0.00 0.00 44.68 3.66
37 38 1.074405 TGTACCGTACCAGGTCTCTGT 59.926 52.381 0.00 0.00 44.68 3.41
38 39 1.830279 TGTACCGTACCAGGTCTCTG 58.170 55.000 0.00 0.00 44.68 3.35
39 40 2.376109 CATGTACCGTACCAGGTCTCT 58.624 52.381 0.00 0.00 44.68 3.10
40 41 1.202382 GCATGTACCGTACCAGGTCTC 60.202 57.143 0.00 0.00 44.68 3.36
41 42 0.822164 GCATGTACCGTACCAGGTCT 59.178 55.000 0.00 0.00 44.68 3.85
42 43 0.533491 TGCATGTACCGTACCAGGTC 59.467 55.000 0.00 0.00 44.68 3.85
44 45 1.338294 TGTTGCATGTACCGTACCAGG 60.338 52.381 6.23 0.00 37.30 4.45
45 46 1.999735 CTGTTGCATGTACCGTACCAG 59.000 52.381 6.23 1.82 0.00 4.00
46 47 1.345089 ACTGTTGCATGTACCGTACCA 59.655 47.619 6.23 0.00 0.00 3.25
47 48 2.088950 ACTGTTGCATGTACCGTACC 57.911 50.000 6.23 0.00 0.00 3.34
48 49 3.577667 TGTACTGTTGCATGTACCGTAC 58.422 45.455 18.68 18.68 38.48 3.67
49 50 3.840468 CTGTACTGTTGCATGTACCGTA 58.160 45.455 16.95 5.35 38.48 4.02
50 51 2.683968 CTGTACTGTTGCATGTACCGT 58.316 47.619 16.95 6.15 38.48 4.83
51 52 1.393539 GCTGTACTGTTGCATGTACCG 59.606 52.381 16.95 13.51 38.48 4.02
52 53 2.673368 GAGCTGTACTGTTGCATGTACC 59.327 50.000 16.95 7.52 38.48 3.34
53 54 3.369147 CAGAGCTGTACTGTTGCATGTAC 59.631 47.826 14.38 14.38 39.37 2.90
54 55 3.258123 TCAGAGCTGTACTGTTGCATGTA 59.742 43.478 0.00 0.00 36.81 2.29
55 56 2.037641 TCAGAGCTGTACTGTTGCATGT 59.962 45.455 0.00 0.00 36.81 3.21
56 57 2.691927 TCAGAGCTGTACTGTTGCATG 58.308 47.619 0.00 0.00 36.81 4.06
57 58 3.007290 TCTTCAGAGCTGTACTGTTGCAT 59.993 43.478 0.00 0.00 36.81 3.96
58 59 2.365293 TCTTCAGAGCTGTACTGTTGCA 59.635 45.455 0.00 0.00 36.81 4.08
59 60 3.032017 TCTTCAGAGCTGTACTGTTGC 57.968 47.619 0.00 0.00 36.81 4.17
60 61 3.931468 CCATCTTCAGAGCTGTACTGTTG 59.069 47.826 0.00 0.00 36.81 3.33
61 62 3.580458 ACCATCTTCAGAGCTGTACTGTT 59.420 43.478 0.00 0.00 36.81 3.16
62 63 3.169099 ACCATCTTCAGAGCTGTACTGT 58.831 45.455 0.00 0.00 36.81 3.55
63 64 3.883830 ACCATCTTCAGAGCTGTACTG 57.116 47.619 0.00 0.00 36.80 2.74
64 65 5.020132 ACTAACCATCTTCAGAGCTGTACT 58.980 41.667 0.00 0.00 0.00 2.73
65 66 5.105752 CACTAACCATCTTCAGAGCTGTAC 58.894 45.833 0.00 0.00 0.00 2.90
66 67 4.160439 CCACTAACCATCTTCAGAGCTGTA 59.840 45.833 0.00 0.00 0.00 2.74
67 68 3.055530 CCACTAACCATCTTCAGAGCTGT 60.056 47.826 0.00 0.00 0.00 4.40
68 69 3.529533 CCACTAACCATCTTCAGAGCTG 58.470 50.000 0.00 0.00 0.00 4.24
69 70 2.093235 GCCACTAACCATCTTCAGAGCT 60.093 50.000 0.00 0.00 0.00 4.09
70 71 2.284190 GCCACTAACCATCTTCAGAGC 58.716 52.381 0.00 0.00 0.00 4.09
71 72 3.529533 CTGCCACTAACCATCTTCAGAG 58.470 50.000 0.00 0.00 0.00 3.35
72 73 2.237143 CCTGCCACTAACCATCTTCAGA 59.763 50.000 0.00 0.00 0.00 3.27
73 74 2.026822 ACCTGCCACTAACCATCTTCAG 60.027 50.000 0.00 0.00 0.00 3.02
74 75 1.985159 ACCTGCCACTAACCATCTTCA 59.015 47.619 0.00 0.00 0.00 3.02
75 76 2.359900 CACCTGCCACTAACCATCTTC 58.640 52.381 0.00 0.00 0.00 2.87
76 77 1.004745 CCACCTGCCACTAACCATCTT 59.995 52.381 0.00 0.00 0.00 2.40
77 78 0.620556 CCACCTGCCACTAACCATCT 59.379 55.000 0.00 0.00 0.00 2.90
78 79 1.032114 GCCACCTGCCACTAACCATC 61.032 60.000 0.00 0.00 0.00 3.51
79 80 1.000896 GCCACCTGCCACTAACCAT 60.001 57.895 0.00 0.00 0.00 3.55
80 81 2.153401 AGCCACCTGCCACTAACCA 61.153 57.895 0.00 0.00 42.71 3.67
81 82 1.675641 CAGCCACCTGCCACTAACC 60.676 63.158 0.00 0.00 42.71 2.85
82 83 3.987404 CAGCCACCTGCCACTAAC 58.013 61.111 0.00 0.00 42.71 2.34
96 97 1.954651 GGTATAAGGCCGTCGCAGC 60.955 63.158 0.00 0.00 36.38 5.25
97 98 1.300697 GGGTATAAGGCCGTCGCAG 60.301 63.158 0.00 0.00 36.38 5.18
98 99 2.816718 GGGTATAAGGCCGTCGCA 59.183 61.111 0.00 0.00 36.38 5.10
99 100 2.355481 CGGGTATAAGGCCGTCGC 60.355 66.667 0.00 0.00 0.00 5.19
100 101 2.337532 CCGGGTATAAGGCCGTCG 59.662 66.667 0.00 0.00 0.00 5.12
106 107 2.030562 CGCCTGCCGGGTATAAGG 59.969 66.667 2.18 0.00 37.43 2.69
107 108 1.300697 GACGCCTGCCGGGTATAAG 60.301 63.158 2.18 0.00 42.52 1.73
108 109 1.404479 ATGACGCCTGCCGGGTATAA 61.404 55.000 2.18 0.00 42.52 0.98
109 110 1.835267 ATGACGCCTGCCGGGTATA 60.835 57.895 2.18 0.00 42.52 1.47
110 111 3.161450 ATGACGCCTGCCGGGTAT 61.161 61.111 2.18 0.00 42.52 2.73
111 112 4.155733 CATGACGCCTGCCGGGTA 62.156 66.667 2.18 0.00 42.52 3.69
115 116 3.803082 CAACCATGACGCCTGCCG 61.803 66.667 0.00 0.00 44.21 5.69
116 117 2.359850 TCAACCATGACGCCTGCC 60.360 61.111 0.00 0.00 0.00 4.85
117 118 2.401766 CCTCAACCATGACGCCTGC 61.402 63.158 0.00 0.00 0.00 4.85
118 119 0.742281 CTCCTCAACCATGACGCCTG 60.742 60.000 0.00 0.00 0.00 4.85
119 120 0.904865 TCTCCTCAACCATGACGCCT 60.905 55.000 0.00 0.00 0.00 5.52
120 121 0.460987 CTCTCCTCAACCATGACGCC 60.461 60.000 0.00 0.00 0.00 5.68
121 122 1.086634 GCTCTCCTCAACCATGACGC 61.087 60.000 0.00 0.00 0.00 5.19
122 123 0.803768 CGCTCTCCTCAACCATGACG 60.804 60.000 0.00 0.00 0.00 4.35
123 124 1.086634 GCGCTCTCCTCAACCATGAC 61.087 60.000 0.00 0.00 0.00 3.06
124 125 1.219124 GCGCTCTCCTCAACCATGA 59.781 57.895 0.00 0.00 0.00 3.07
125 126 1.817099 GGCGCTCTCCTCAACCATG 60.817 63.158 7.64 0.00 0.00 3.66
126 127 2.586792 GGCGCTCTCCTCAACCAT 59.413 61.111 7.64 0.00 0.00 3.55
127 128 4.069232 CGGCGCTCTCCTCAACCA 62.069 66.667 7.64 0.00 0.00 3.67
128 129 4.821589 CCGGCGCTCTCCTCAACC 62.822 72.222 7.64 0.00 0.00 3.77
129 130 3.760035 TCCGGCGCTCTCCTCAAC 61.760 66.667 7.64 0.00 0.00 3.18
130 131 3.760035 GTCCGGCGCTCTCCTCAA 61.760 66.667 7.64 0.00 0.00 3.02
131 132 4.742649 AGTCCGGCGCTCTCCTCA 62.743 66.667 7.64 0.00 0.00 3.86
132 133 4.200283 CAGTCCGGCGCTCTCCTC 62.200 72.222 7.64 0.00 0.00 3.71
135 136 3.127352 CTACCAGTCCGGCGCTCTC 62.127 68.421 7.64 0.00 39.03 3.20
136 137 3.141488 CTACCAGTCCGGCGCTCT 61.141 66.667 7.64 0.00 39.03 4.09
137 138 4.208686 CCTACCAGTCCGGCGCTC 62.209 72.222 7.64 0.00 39.03 5.03
139 140 4.814294 CACCTACCAGTCCGGCGC 62.814 72.222 0.00 0.00 39.03 6.53
140 141 4.814294 GCACCTACCAGTCCGGCG 62.814 72.222 0.00 0.00 39.03 6.46
141 142 4.468689 GGCACCTACCAGTCCGGC 62.469 72.222 0.00 0.00 39.03 6.13
159 160 4.910585 GACGCCTGCCGGGTATGG 62.911 72.222 2.18 0.00 42.52 2.74
160 161 4.910585 GGACGCCTGCCGGGTATG 62.911 72.222 2.18 0.00 42.52 2.39
170 171 3.637273 GTCCCAACCAGGACGCCT 61.637 66.667 0.00 0.00 46.57 5.52
186 187 6.449830 ACCTAAACATTTAAGACCTGAGGT 57.550 37.500 2.41 2.41 39.44 3.85
187 188 7.309194 CCAAACCTAAACATTTAAGACCTGAGG 60.309 40.741 0.00 0.00 0.00 3.86
188 189 7.593825 CCAAACCTAAACATTTAAGACCTGAG 58.406 38.462 0.00 0.00 0.00 3.35
189 190 6.015772 GCCAAACCTAAACATTTAAGACCTGA 60.016 38.462 0.00 0.00 0.00 3.86
190 191 6.015434 AGCCAAACCTAAACATTTAAGACCTG 60.015 38.462 0.00 0.00 0.00 4.00
191 192 6.015434 CAGCCAAACCTAAACATTTAAGACCT 60.015 38.462 0.00 0.00 0.00 3.85
192 193 6.156519 CAGCCAAACCTAAACATTTAAGACC 58.843 40.000 0.00 0.00 0.00 3.85
193 194 5.633601 GCAGCCAAACCTAAACATTTAAGAC 59.366 40.000 0.00 0.00 0.00 3.01
194 195 5.563867 CGCAGCCAAACCTAAACATTTAAGA 60.564 40.000 0.00 0.00 0.00 2.10
195 196 4.621034 CGCAGCCAAACCTAAACATTTAAG 59.379 41.667 0.00 0.00 0.00 1.85
196 197 4.278669 TCGCAGCCAAACCTAAACATTTAA 59.721 37.500 0.00 0.00 0.00 1.52
197 198 3.821600 TCGCAGCCAAACCTAAACATTTA 59.178 39.130 0.00 0.00 0.00 1.40
198 199 2.625790 TCGCAGCCAAACCTAAACATTT 59.374 40.909 0.00 0.00 0.00 2.32
199 200 2.235016 TCGCAGCCAAACCTAAACATT 58.765 42.857 0.00 0.00 0.00 2.71
200 201 1.904287 TCGCAGCCAAACCTAAACAT 58.096 45.000 0.00 0.00 0.00 2.71
201 202 1.539388 CATCGCAGCCAAACCTAAACA 59.461 47.619 0.00 0.00 0.00 2.83
202 203 1.539827 ACATCGCAGCCAAACCTAAAC 59.460 47.619 0.00 0.00 0.00 2.01
203 204 1.810151 GACATCGCAGCCAAACCTAAA 59.190 47.619 0.00 0.00 0.00 1.85
204 205 1.003118 AGACATCGCAGCCAAACCTAA 59.997 47.619 0.00 0.00 0.00 2.69
205 206 0.613260 AGACATCGCAGCCAAACCTA 59.387 50.000 0.00 0.00 0.00 3.08
206 207 0.957395 CAGACATCGCAGCCAAACCT 60.957 55.000 0.00 0.00 0.00 3.50
207 208 1.237285 ACAGACATCGCAGCCAAACC 61.237 55.000 0.00 0.00 0.00 3.27
208 209 0.593128 AACAGACATCGCAGCCAAAC 59.407 50.000 0.00 0.00 0.00 2.93
209 210 1.001487 CAAACAGACATCGCAGCCAAA 60.001 47.619 0.00 0.00 0.00 3.28
210 211 0.592637 CAAACAGACATCGCAGCCAA 59.407 50.000 0.00 0.00 0.00 4.52
211 212 1.236616 CCAAACAGACATCGCAGCCA 61.237 55.000 0.00 0.00 0.00 4.75
212 213 1.237285 ACCAAACAGACATCGCAGCC 61.237 55.000 0.00 0.00 0.00 4.85
213 214 1.438651 TACCAAACAGACATCGCAGC 58.561 50.000 0.00 0.00 0.00 5.25
214 215 4.271049 CCTAATACCAAACAGACATCGCAG 59.729 45.833 0.00 0.00 0.00 5.18
215 216 4.188462 CCTAATACCAAACAGACATCGCA 58.812 43.478 0.00 0.00 0.00 5.10
216 217 3.002348 GCCTAATACCAAACAGACATCGC 59.998 47.826 0.00 0.00 0.00 4.58
217 218 3.560068 GGCCTAATACCAAACAGACATCG 59.440 47.826 0.00 0.00 0.00 3.84
218 219 3.883489 GGGCCTAATACCAAACAGACATC 59.117 47.826 0.84 0.00 0.00 3.06
219 220 3.268334 TGGGCCTAATACCAAACAGACAT 59.732 43.478 4.53 0.00 32.89 3.06
220 221 2.645297 TGGGCCTAATACCAAACAGACA 59.355 45.455 4.53 0.00 32.89 3.41
221 222 3.054655 TCTGGGCCTAATACCAAACAGAC 60.055 47.826 4.53 0.00 36.09 3.51
222 223 3.054655 GTCTGGGCCTAATACCAAACAGA 60.055 47.826 4.53 0.00 36.09 3.41
223 224 3.054361 AGTCTGGGCCTAATACCAAACAG 60.054 47.826 4.53 0.00 36.09 3.16
224 225 2.916934 AGTCTGGGCCTAATACCAAACA 59.083 45.455 4.53 0.00 36.09 2.83
225 226 3.646736 AGTCTGGGCCTAATACCAAAC 57.353 47.619 4.53 0.00 36.09 2.93
226 227 5.071788 CAGATAGTCTGGGCCTAATACCAAA 59.928 44.000 4.53 0.00 40.71 3.28
227 228 4.593206 CAGATAGTCTGGGCCTAATACCAA 59.407 45.833 4.53 0.00 40.71 3.67
228 229 4.160329 CAGATAGTCTGGGCCTAATACCA 58.840 47.826 4.53 0.00 40.71 3.25
229 230 3.055747 GCAGATAGTCTGGGCCTAATACC 60.056 52.174 4.53 0.00 44.43 2.73
230 231 4.195225 GCAGATAGTCTGGGCCTAATAC 57.805 50.000 4.53 0.00 44.43 1.89
239 240 1.690219 AAGGGGCGCAGATAGTCTGG 61.690 60.000 10.83 1.19 44.43 3.86
240 241 0.249657 GAAGGGGCGCAGATAGTCTG 60.250 60.000 10.83 2.65 46.90 3.51
241 242 0.687757 TGAAGGGGCGCAGATAGTCT 60.688 55.000 10.83 0.00 0.00 3.24
242 243 0.394565 ATGAAGGGGCGCAGATAGTC 59.605 55.000 10.83 0.00 0.00 2.59
243 244 0.394565 GATGAAGGGGCGCAGATAGT 59.605 55.000 10.83 0.00 0.00 2.12
244 245 0.394192 TGATGAAGGGGCGCAGATAG 59.606 55.000 10.83 0.00 0.00 2.08
245 246 0.836606 TTGATGAAGGGGCGCAGATA 59.163 50.000 10.83 0.00 0.00 1.98
246 247 0.184451 ATTGATGAAGGGGCGCAGAT 59.816 50.000 10.83 0.00 0.00 2.90
247 248 0.034186 AATTGATGAAGGGGCGCAGA 60.034 50.000 10.83 0.00 0.00 4.26
248 249 0.101759 CAATTGATGAAGGGGCGCAG 59.898 55.000 10.83 0.00 0.00 5.18
249 250 1.321805 CCAATTGATGAAGGGGCGCA 61.322 55.000 10.83 0.00 0.00 6.09
250 251 1.037030 TCCAATTGATGAAGGGGCGC 61.037 55.000 7.12 0.00 0.00 6.53
251 252 1.696063 ATCCAATTGATGAAGGGGCG 58.304 50.000 7.12 0.00 30.54 6.13
252 253 3.160269 CCTATCCAATTGATGAAGGGGC 58.840 50.000 7.12 0.00 34.76 5.80
253 254 4.147321 CACCTATCCAATTGATGAAGGGG 58.853 47.826 7.12 5.55 34.76 4.79
254 255 4.796606 ACACCTATCCAATTGATGAAGGG 58.203 43.478 7.12 6.01 34.76 3.95
255 256 5.471456 GCTACACCTATCCAATTGATGAAGG 59.529 44.000 7.12 10.29 34.76 3.46
256 257 5.178252 CGCTACACCTATCCAATTGATGAAG 59.822 44.000 7.12 0.00 34.76 3.02
257 258 5.056480 CGCTACACCTATCCAATTGATGAA 58.944 41.667 7.12 0.00 34.76 2.57
258 259 4.343814 TCGCTACACCTATCCAATTGATGA 59.656 41.667 7.12 0.00 34.76 2.92
259 260 4.449068 GTCGCTACACCTATCCAATTGATG 59.551 45.833 7.12 0.00 34.76 3.07
260 261 4.100963 TGTCGCTACACCTATCCAATTGAT 59.899 41.667 7.12 1.44 37.49 2.57
261 262 3.449377 TGTCGCTACACCTATCCAATTGA 59.551 43.478 7.12 0.00 0.00 2.57
262 263 3.792401 TGTCGCTACACCTATCCAATTG 58.208 45.455 0.00 0.00 0.00 2.32
263 264 4.481368 TTGTCGCTACACCTATCCAATT 57.519 40.909 0.00 0.00 34.61 2.32
264 265 4.689612 ATTGTCGCTACACCTATCCAAT 57.310 40.909 0.00 0.00 34.61 3.16
265 266 4.188462 CAATTGTCGCTACACCTATCCAA 58.812 43.478 0.00 0.00 34.61 3.53
266 267 3.196901 ACAATTGTCGCTACACCTATCCA 59.803 43.478 4.92 0.00 34.61 3.41
267 268 3.793559 ACAATTGTCGCTACACCTATCC 58.206 45.455 4.92 0.00 34.61 2.59
268 269 4.494199 GCAACAATTGTCGCTACACCTATC 60.494 45.833 14.28 0.00 34.61 2.08
269 270 3.374058 GCAACAATTGTCGCTACACCTAT 59.626 43.478 14.28 0.00 34.61 2.57
270 271 2.739913 GCAACAATTGTCGCTACACCTA 59.260 45.455 14.28 0.00 34.61 3.08
271 272 1.535462 GCAACAATTGTCGCTACACCT 59.465 47.619 14.28 0.00 34.61 4.00
272 273 1.535462 AGCAACAATTGTCGCTACACC 59.465 47.619 22.22 0.31 34.61 4.16
273 274 2.969443 AGCAACAATTGTCGCTACAC 57.031 45.000 22.22 2.28 34.61 2.90
274 275 4.151689 GTCTAAGCAACAATTGTCGCTACA 59.848 41.667 23.64 13.74 33.45 2.74
275 276 4.638963 GTCTAAGCAACAATTGTCGCTAC 58.361 43.478 23.64 14.71 33.45 3.58
276 277 3.366724 CGTCTAAGCAACAATTGTCGCTA 59.633 43.478 23.64 6.41 33.45 4.26
277 278 2.157668 CGTCTAAGCAACAATTGTCGCT 59.842 45.455 18.27 18.27 35.90 4.93
278 279 2.495939 CGTCTAAGCAACAATTGTCGC 58.504 47.619 13.73 13.73 0.00 5.19
279 280 2.478894 ACCGTCTAAGCAACAATTGTCG 59.521 45.455 12.39 8.22 0.00 4.35
280 281 3.364964 CCACCGTCTAAGCAACAATTGTC 60.365 47.826 12.39 0.00 0.00 3.18
281 282 2.552315 CCACCGTCTAAGCAACAATTGT 59.448 45.455 4.92 4.92 0.00 2.71
282 283 2.668279 GCCACCGTCTAAGCAACAATTG 60.668 50.000 3.24 3.24 0.00 2.32
283 284 1.539827 GCCACCGTCTAAGCAACAATT 59.460 47.619 0.00 0.00 0.00 2.32
284 285 1.165270 GCCACCGTCTAAGCAACAAT 58.835 50.000 0.00 0.00 0.00 2.71
285 286 0.107831 AGCCACCGTCTAAGCAACAA 59.892 50.000 0.00 0.00 0.00 2.83
286 287 0.107831 AAGCCACCGTCTAAGCAACA 59.892 50.000 0.00 0.00 0.00 3.33
287 288 1.235724 AAAGCCACCGTCTAAGCAAC 58.764 50.000 0.00 0.00 0.00 4.17
288 289 2.038033 ACTAAAGCCACCGTCTAAGCAA 59.962 45.455 0.00 0.00 0.00 3.91
289 290 1.621814 ACTAAAGCCACCGTCTAAGCA 59.378 47.619 0.00 0.00 0.00 3.91
290 291 2.094130 AGACTAAAGCCACCGTCTAAGC 60.094 50.000 0.00 0.00 35.15 3.09
291 292 3.870633 AGACTAAAGCCACCGTCTAAG 57.129 47.619 0.00 0.00 35.15 2.18
292 293 4.768968 AGTAAGACTAAAGCCACCGTCTAA 59.231 41.667 0.00 0.00 35.82 2.10
293 294 4.157289 CAGTAAGACTAAAGCCACCGTCTA 59.843 45.833 0.00 0.00 35.82 2.59
294 295 3.056749 CAGTAAGACTAAAGCCACCGTCT 60.057 47.826 0.00 0.00 38.29 4.18
295 296 3.251571 CAGTAAGACTAAAGCCACCGTC 58.748 50.000 0.00 0.00 0.00 4.79
296 297 2.631545 ACAGTAAGACTAAAGCCACCGT 59.368 45.455 0.00 0.00 0.00 4.83
297 298 3.314541 ACAGTAAGACTAAAGCCACCG 57.685 47.619 0.00 0.00 0.00 4.94
298 299 4.386711 ACAACAGTAAGACTAAAGCCACC 58.613 43.478 0.00 0.00 0.00 4.61
299 300 6.872020 TCATACAACAGTAAGACTAAAGCCAC 59.128 38.462 0.00 0.00 0.00 5.01
300 301 6.872020 GTCATACAACAGTAAGACTAAAGCCA 59.128 38.462 4.35 0.00 34.99 4.75
301 302 7.097834 AGTCATACAACAGTAAGACTAAAGCC 58.902 38.462 10.67 0.00 42.02 4.35
302 303 8.535690 AAGTCATACAACAGTAAGACTAAAGC 57.464 34.615 12.21 0.00 42.62 3.51
304 305 9.826574 ACAAAGTCATACAACAGTAAGACTAAA 57.173 29.630 12.21 0.00 42.62 1.85
307 308 9.477484 CTTACAAAGTCATACAACAGTAAGACT 57.523 33.333 7.48 7.48 44.26 3.24
308 309 8.709646 CCTTACAAAGTCATACAACAGTAAGAC 58.290 37.037 0.00 3.57 39.45 3.01
309 310 8.426489 ACCTTACAAAGTCATACAACAGTAAGA 58.574 33.333 0.00 0.00 39.45 2.10
310 311 8.603242 ACCTTACAAAGTCATACAACAGTAAG 57.397 34.615 0.00 0.00 37.80 2.34
311 312 8.426489 AGACCTTACAAAGTCATACAACAGTAA 58.574 33.333 0.00 0.00 0.00 2.24
312 313 7.959175 AGACCTTACAAAGTCATACAACAGTA 58.041 34.615 0.00 0.00 0.00 2.74
313 314 6.827727 AGACCTTACAAAGTCATACAACAGT 58.172 36.000 0.00 0.00 0.00 3.55
314 315 7.226720 ACAAGACCTTACAAAGTCATACAACAG 59.773 37.037 0.00 0.00 0.00 3.16
315 316 7.011950 CACAAGACCTTACAAAGTCATACAACA 59.988 37.037 0.00 0.00 0.00 3.33
316 317 7.225931 TCACAAGACCTTACAAAGTCATACAAC 59.774 37.037 0.00 0.00 0.00 3.32
317 318 7.276658 TCACAAGACCTTACAAAGTCATACAA 58.723 34.615 0.00 0.00 0.00 2.41
318 319 6.822442 TCACAAGACCTTACAAAGTCATACA 58.178 36.000 0.00 0.00 0.00 2.29
319 320 7.152645 TCTCACAAGACCTTACAAAGTCATAC 58.847 38.462 0.00 0.00 0.00 2.39
320 321 7.297936 TCTCACAAGACCTTACAAAGTCATA 57.702 36.000 0.00 0.00 0.00 2.15
321 322 6.174720 TCTCACAAGACCTTACAAAGTCAT 57.825 37.500 0.00 0.00 0.00 3.06
322 323 5.607939 TCTCACAAGACCTTACAAAGTCA 57.392 39.130 0.00 0.00 0.00 3.41
323 324 8.603242 TTATTCTCACAAGACCTTACAAAGTC 57.397 34.615 0.00 0.00 0.00 3.01
324 325 9.574516 AATTATTCTCACAAGACCTTACAAAGT 57.425 29.630 0.00 0.00 0.00 2.66
347 348 8.977505 GCGATGCATACAACCATTTTATTAATT 58.022 29.630 0.00 0.00 0.00 1.40
348 349 8.359642 AGCGATGCATACAACCATTTTATTAAT 58.640 29.630 0.00 0.00 0.00 1.40
349 350 7.711846 AGCGATGCATACAACCATTTTATTAA 58.288 30.769 0.00 0.00 0.00 1.40
350 351 7.012799 TGAGCGATGCATACAACCATTTTATTA 59.987 33.333 0.00 0.00 0.00 0.98
351 352 6.147864 AGCGATGCATACAACCATTTTATT 57.852 33.333 0.00 0.00 0.00 1.40
352 353 5.299028 TGAGCGATGCATACAACCATTTTAT 59.701 36.000 0.00 0.00 0.00 1.40
353 354 4.637977 TGAGCGATGCATACAACCATTTTA 59.362 37.500 0.00 0.00 0.00 1.52
354 355 3.443329 TGAGCGATGCATACAACCATTTT 59.557 39.130 0.00 0.00 0.00 1.82
355 356 3.016031 TGAGCGATGCATACAACCATTT 58.984 40.909 0.00 0.00 0.00 2.32
356 357 2.615447 CTGAGCGATGCATACAACCATT 59.385 45.455 0.00 0.00 0.00 3.16
357 358 2.158914 TCTGAGCGATGCATACAACCAT 60.159 45.455 0.00 0.00 0.00 3.55
358 359 1.206849 TCTGAGCGATGCATACAACCA 59.793 47.619 0.00 0.00 0.00 3.67
359 360 1.939974 TCTGAGCGATGCATACAACC 58.060 50.000 0.00 0.00 0.00 3.77
360 361 3.516681 CATCTGAGCGATGCATACAAC 57.483 47.619 0.00 0.00 42.75 3.32
369 370 1.069427 GCCTCTGCATCTGAGCGAT 59.931 57.895 0.00 0.00 37.31 4.58
370 371 2.498248 GCCTCTGCATCTGAGCGA 59.502 61.111 0.00 0.00 37.31 4.93
371 372 2.588314 GGCCTCTGCATCTGAGCG 60.588 66.667 0.00 0.00 40.13 5.03
372 373 2.588314 CGGCCTCTGCATCTGAGC 60.588 66.667 0.00 0.00 40.13 4.26
373 374 2.108566 CCGGCCTCTGCATCTGAG 59.891 66.667 0.00 0.00 40.13 3.35
374 375 3.473647 CCCGGCCTCTGCATCTGA 61.474 66.667 0.00 0.00 40.13 3.27
375 376 3.457625 CTCCCGGCCTCTGCATCTG 62.458 68.421 0.00 0.00 40.13 2.90
376 377 3.160047 CTCCCGGCCTCTGCATCT 61.160 66.667 0.00 0.00 40.13 2.90
377 378 3.453070 GACTCCCGGCCTCTGCATC 62.453 68.421 0.00 0.00 40.13 3.91
378 379 3.474570 GACTCCCGGCCTCTGCAT 61.475 66.667 0.00 0.00 40.13 3.96
380 381 3.453070 GATGACTCCCGGCCTCTGC 62.453 68.421 0.00 0.00 0.00 4.26
381 382 2.801631 GGATGACTCCCGGCCTCTG 61.802 68.421 0.00 0.00 35.28 3.35
382 383 2.444895 GGATGACTCCCGGCCTCT 60.445 66.667 0.00 0.00 35.28 3.69
383 384 2.034048 GAAGGATGACTCCCGGCCTC 62.034 65.000 0.00 0.00 43.21 4.70
384 385 2.041265 AAGGATGACTCCCGGCCT 59.959 61.111 0.00 0.00 43.21 5.19
385 386 1.627297 AAGAAGGATGACTCCCGGCC 61.627 60.000 0.00 0.00 43.21 6.13
386 387 0.253327 AAAGAAGGATGACTCCCGGC 59.747 55.000 0.00 0.00 43.21 6.13
387 388 2.237392 AGAAAAGAAGGATGACTCCCGG 59.763 50.000 0.00 0.00 43.21 5.73
388 389 3.618690 AGAAAAGAAGGATGACTCCCG 57.381 47.619 0.00 0.00 43.21 5.14
389 390 7.761038 TTTTTAGAAAAGAAGGATGACTCCC 57.239 36.000 0.00 0.00 43.21 4.30
411 412 2.793278 AATGCTTTCGCTCCGTTTTT 57.207 40.000 0.00 0.00 36.97 1.94
412 413 2.793278 AAATGCTTTCGCTCCGTTTT 57.207 40.000 0.00 0.00 36.97 2.43
413 414 2.793278 AAAATGCTTTCGCTCCGTTT 57.207 40.000 0.00 0.00 36.97 3.60
414 415 2.661594 GAAAAATGCTTTCGCTCCGTT 58.338 42.857 0.00 0.00 36.97 4.44
415 416 1.399727 CGAAAAATGCTTTCGCTCCGT 60.400 47.619 6.41 0.00 43.52 4.69
416 417 1.250476 CGAAAAATGCTTTCGCTCCG 58.750 50.000 6.41 0.00 43.52 4.63
417 418 1.068541 ACCGAAAAATGCTTTCGCTCC 60.069 47.619 12.40 0.00 46.89 4.70
418 419 2.331809 ACCGAAAAATGCTTTCGCTC 57.668 45.000 12.40 0.00 46.89 5.03
419 420 2.793278 AACCGAAAAATGCTTTCGCT 57.207 40.000 12.40 0.00 46.89 4.93
420 421 6.307077 AGTTATTAACCGAAAAATGCTTTCGC 59.693 34.615 12.40 0.00 46.89 4.70
422 423 9.836076 AGTAGTTATTAACCGAAAAATGCTTTC 57.164 29.630 2.92 0.00 0.00 2.62
431 432 9.860898 GAAGGACTTAGTAGTTATTAACCGAAA 57.139 33.333 2.92 0.00 33.84 3.46
432 433 9.247861 AGAAGGACTTAGTAGTTATTAACCGAA 57.752 33.333 2.92 0.00 33.84 4.30
433 434 8.814038 AGAAGGACTTAGTAGTTATTAACCGA 57.186 34.615 2.92 0.00 33.84 4.69
434 435 9.943163 GTAGAAGGACTTAGTAGTTATTAACCG 57.057 37.037 2.92 0.00 33.84 4.44
438 439 9.129532 GCTGGTAGAAGGACTTAGTAGTTATTA 57.870 37.037 0.00 0.00 33.84 0.98
439 440 7.618512 TGCTGGTAGAAGGACTTAGTAGTTATT 59.381 37.037 0.00 0.00 33.84 1.40
440 441 7.124052 TGCTGGTAGAAGGACTTAGTAGTTAT 58.876 38.462 0.00 0.00 33.84 1.89
441 442 6.487828 TGCTGGTAGAAGGACTTAGTAGTTA 58.512 40.000 0.00 0.00 33.84 2.24
442 443 5.331069 TGCTGGTAGAAGGACTTAGTAGTT 58.669 41.667 0.00 0.00 33.84 2.24
443 444 4.931914 TGCTGGTAGAAGGACTTAGTAGT 58.068 43.478 0.00 0.00 37.31 2.73
444 445 4.951094 ACTGCTGGTAGAAGGACTTAGTAG 59.049 45.833 0.00 0.00 0.00 2.57
445 446 4.931914 ACTGCTGGTAGAAGGACTTAGTA 58.068 43.478 0.00 0.00 0.00 1.82
446 447 3.780626 ACTGCTGGTAGAAGGACTTAGT 58.219 45.455 0.00 0.00 0.00 2.24
447 448 4.220821 TCAACTGCTGGTAGAAGGACTTAG 59.779 45.833 0.00 0.00 0.00 2.18
448 449 4.157246 TCAACTGCTGGTAGAAGGACTTA 58.843 43.478 0.00 0.00 0.00 2.24
483 485 4.278310 ACCATTGGCTAGGATTTGGTTAC 58.722 43.478 1.54 0.00 33.83 2.50
544 546 3.674906 TTGCATACGGTGGCAACC 58.325 55.556 15.18 0.00 44.41 3.77
611 613 6.364568 TTCAATCATGAGAGAGAAAGACCA 57.635 37.500 0.09 0.00 36.78 4.02
665 670 0.313672 GTGGAAATGTCAAAGCCGCA 59.686 50.000 0.00 0.00 0.00 5.69
703 708 4.705337 ATTGGTCAGTCTACGTCTTCTC 57.295 45.455 0.00 0.00 0.00 2.87
731 737 4.531732 ACCGTAGTTATACCAAGGTTTCCA 59.468 41.667 0.00 0.00 0.00 3.53
738 744 4.331717 CCTTGCAACCGTAGTTATACCAAG 59.668 45.833 0.00 0.00 33.27 3.61
739 745 4.020396 TCCTTGCAACCGTAGTTATACCAA 60.020 41.667 0.00 0.00 33.27 3.67
1077 1139 0.986527 TCTGCAGGCCATTCAGAAGA 59.013 50.000 15.13 3.11 34.30 2.87
1081 1143 2.054232 ATCTTCTGCAGGCCATTCAG 57.946 50.000 15.13 9.12 0.00 3.02
1198 1270 3.118629 GGTGCAAGATAGACAGGATCACA 60.119 47.826 0.00 0.00 0.00 3.58
1199 1271 3.133721 AGGTGCAAGATAGACAGGATCAC 59.866 47.826 0.00 0.00 0.00 3.06
1200 1272 3.378512 AGGTGCAAGATAGACAGGATCA 58.621 45.455 0.00 0.00 0.00 2.92
1201 1273 3.640967 AGAGGTGCAAGATAGACAGGATC 59.359 47.826 0.00 0.00 0.00 3.36
1202 1274 3.652055 AGAGGTGCAAGATAGACAGGAT 58.348 45.455 0.00 0.00 0.00 3.24
1221 1297 3.769739 TGGTAAAGAGAAGCAGCAAGA 57.230 42.857 0.00 0.00 0.00 3.02
1448 1527 0.685097 TGCAGGCCTTCTCGTACTTT 59.315 50.000 0.00 0.00 0.00 2.66
1687 1805 2.811514 ATGGCGCATCATCCTCCGT 61.812 57.895 10.83 0.00 0.00 4.69
1798 1923 2.223479 GCCAACAATCGTGACACAAAGT 60.223 45.455 6.37 0.00 0.00 2.66
1941 2071 3.959943 ACCAATTTCTTCGGTTCGTTTG 58.040 40.909 0.00 0.00 0.00 2.93
1964 2094 1.029947 GTGACGGGGCAACTATTGGG 61.030 60.000 0.00 0.00 0.00 4.12
1966 2096 1.977594 GCGTGACGGGGCAACTATTG 61.978 60.000 7.25 0.00 0.00 1.90
2019 2149 7.941431 TTAAAGTCTCCACCAACTAAACAAA 57.059 32.000 0.00 0.00 0.00 2.83
2081 2215 4.808558 GCACAAAGCTCCAATGATTAACA 58.191 39.130 0.00 0.00 41.15 2.41
2110 2244 2.796031 ACACTCGTGCGTATTCGAAAAA 59.204 40.909 0.00 0.00 39.71 1.94
2111 2245 2.154198 CACACTCGTGCGTATTCGAAAA 59.846 45.455 0.00 0.00 36.06 2.29
2112 2246 1.717113 CACACTCGTGCGTATTCGAAA 59.283 47.619 0.00 0.00 36.06 3.46
2113 2247 1.333115 CACACTCGTGCGTATTCGAA 58.667 50.000 0.00 0.00 36.06 3.71
2114 2248 3.010088 CACACTCGTGCGTATTCGA 57.990 52.632 0.00 0.00 36.06 3.71
2157 2291 2.775219 AACGGTGGTTGGACCCCT 60.775 61.111 0.00 0.00 37.50 4.79
2187 2321 8.512138 GGTTTGATGCTATTGTAGTGTTTAACT 58.488 33.333 0.00 0.00 43.40 2.24
2195 2329 3.374058 GCGTGGTTTGATGCTATTGTAGT 59.626 43.478 0.00 0.00 0.00 2.73
2196 2330 3.242739 GGCGTGGTTTGATGCTATTGTAG 60.243 47.826 0.00 0.00 0.00 2.74
2202 2336 1.271108 TGAAGGCGTGGTTTGATGCTA 60.271 47.619 0.00 0.00 0.00 3.49
2204 2338 0.313672 TTGAAGGCGTGGTTTGATGC 59.686 50.000 0.00 0.00 0.00 3.91
2209 2343 1.021968 GTGAGTTGAAGGCGTGGTTT 58.978 50.000 0.00 0.00 0.00 3.27
2213 2347 2.954753 GCGGTGAGTTGAAGGCGTG 61.955 63.158 0.00 0.00 0.00 5.34
2220 2354 0.541063 TAGGTGGAGCGGTGAGTTGA 60.541 55.000 0.00 0.00 0.00 3.18
2223 2357 0.830444 TTGTAGGTGGAGCGGTGAGT 60.830 55.000 0.00 0.00 0.00 3.41
2225 2359 1.479323 GTATTGTAGGTGGAGCGGTGA 59.521 52.381 0.00 0.00 0.00 4.02
2237 2371 6.414109 CGAGTAATCCGTTCTGTGTATTGTAG 59.586 42.308 0.00 0.00 0.00 2.74
2238 2372 6.260377 CGAGTAATCCGTTCTGTGTATTGTA 58.740 40.000 0.00 0.00 0.00 2.41
2239 2373 5.100259 CGAGTAATCCGTTCTGTGTATTGT 58.900 41.667 0.00 0.00 0.00 2.71
2242 2376 3.698040 ACCGAGTAATCCGTTCTGTGTAT 59.302 43.478 0.00 0.00 0.00 2.29
2243 2377 3.084039 ACCGAGTAATCCGTTCTGTGTA 58.916 45.455 0.00 0.00 0.00 2.90
2247 2381 3.545624 CGAGTACCGAGTAATCCGTTCTG 60.546 52.174 6.11 0.00 41.76 3.02
2249 2383 2.852522 GCGAGTACCGAGTAATCCGTTC 60.853 54.545 7.77 0.00 41.76 3.95
2251 2385 0.659957 GCGAGTACCGAGTAATCCGT 59.340 55.000 7.77 0.00 41.76 4.69
2252 2386 0.040603 GGCGAGTACCGAGTAATCCG 60.041 60.000 7.77 0.00 41.76 4.18
2254 2388 1.027357 TGGGCGAGTACCGAGTAATC 58.973 55.000 7.77 0.00 41.76 1.75
2255 2389 0.743097 GTGGGCGAGTACCGAGTAAT 59.257 55.000 7.77 0.00 41.76 1.89
2256 2390 1.315257 GGTGGGCGAGTACCGAGTAA 61.315 60.000 7.77 0.00 41.76 2.24
2257 2391 1.750399 GGTGGGCGAGTACCGAGTA 60.750 63.158 7.77 0.00 41.76 2.59
2259 2393 3.834799 GGGTGGGCGAGTACCGAG 61.835 72.222 7.77 0.00 41.76 4.63
2260 2394 4.682334 TGGGTGGGCGAGTACCGA 62.682 66.667 7.77 0.00 41.76 4.69
2261 2395 4.143333 CTGGGTGGGCGAGTACCG 62.143 72.222 0.00 0.00 37.85 4.02
2262 2396 2.682494 TCTGGGTGGGCGAGTACC 60.682 66.667 0.00 0.00 36.21 3.34
2267 2415 2.747443 TTGTTGTCTGGGTGGGCGA 61.747 57.895 0.00 0.00 0.00 5.54
2270 2418 0.182537 TGAGTTGTTGTCTGGGTGGG 59.817 55.000 0.00 0.00 0.00 4.61
2277 2425 5.527582 GGATAGTGTGTTTGAGTTGTTGTCT 59.472 40.000 0.00 0.00 0.00 3.41
2282 2430 5.473504 GGAATGGATAGTGTGTTTGAGTTGT 59.526 40.000 0.00 0.00 0.00 3.32
2283 2431 5.390885 CGGAATGGATAGTGTGTTTGAGTTG 60.391 44.000 0.00 0.00 0.00 3.16
2294 2442 2.222027 GAAAGGGCGGAATGGATAGTG 58.778 52.381 0.00 0.00 0.00 2.74
2295 2443 1.843851 TGAAAGGGCGGAATGGATAGT 59.156 47.619 0.00 0.00 0.00 2.12
2303 2451 1.901464 GCCTGTTGAAAGGGCGGAA 60.901 57.895 0.00 0.00 37.84 4.30
2308 2456 2.680913 CGCGAGCCTGTTGAAAGGG 61.681 63.158 0.00 0.00 37.84 3.95
2311 2459 2.892334 GCACGCGAGCCTGTTGAAA 61.892 57.895 18.20 0.00 0.00 2.69
2326 2474 0.538287 AGGGAAGAGTTTGGCAGCAC 60.538 55.000 0.00 0.00 0.00 4.40
2336 2484 1.004080 TCGTCGTCGAGGGAAGAGT 60.004 57.895 14.44 0.00 41.35 3.24
2346 2494 1.225422 GTCAGTCGAGTCGTCGTCG 60.225 63.158 13.12 0.00 46.85 5.12
2347 2495 1.132232 GGTCAGTCGAGTCGTCGTC 59.868 63.158 13.12 3.32 46.85 4.20
2348 2496 1.596203 TGGTCAGTCGAGTCGTCGT 60.596 57.895 13.12 0.00 46.85 4.34
2358 2506 2.096248 CTCTAGAGGTGGTGGTCAGTC 58.904 57.143 12.27 0.00 0.00 3.51
2359 2507 1.711375 TCTCTAGAGGTGGTGGTCAGT 59.289 52.381 19.67 0.00 0.00 3.41
2365 2513 1.065345 TCTCCGTCTCTAGAGGTGGTG 60.065 57.143 19.67 19.33 0.00 4.17
2374 2522 0.328592 ACAGTGCCTCTCCGTCTCTA 59.671 55.000 0.00 0.00 0.00 2.43
2388 2536 1.418373 TGCGATCGTCTTTGACAGTG 58.582 50.000 17.81 0.00 32.09 3.66
2389 2537 2.370281 ATGCGATCGTCTTTGACAGT 57.630 45.000 17.81 0.00 32.09 3.55
2391 2539 1.999735 GGAATGCGATCGTCTTTGACA 59.000 47.619 17.81 4.31 32.09 3.58
2426 2574 2.355193 GGGCTCTCCTCACGCTCTT 61.355 63.158 0.00 0.00 0.00 2.85
2427 2575 2.757917 GGGCTCTCCTCACGCTCT 60.758 66.667 0.00 0.00 0.00 4.09
2461 2618 1.633561 CGAGAACGACATGAGTGCAT 58.366 50.000 0.00 0.00 42.66 3.96
2483 2640 4.326255 CCTCAAGGGATGGTGTGC 57.674 61.111 0.00 0.00 37.23 4.57
2497 2654 3.083997 ATGACCCAGGACGCCCTC 61.084 66.667 0.00 0.00 42.02 4.30
2502 2659 1.685765 TCTCCCATGACCCAGGACG 60.686 63.158 0.00 0.00 0.00 4.79
2513 2670 6.447084 TTAGGAAAACTAGAATGGTCTCCCAT 59.553 38.462 0.00 0.00 42.27 4.00
2516 2673 6.350103 CCTTAGGAAAACTAGAATGGTCTCC 58.650 44.000 0.00 0.00 35.12 3.71
2518 2675 5.489278 AGCCTTAGGAAAACTAGAATGGTCT 59.511 40.000 0.69 0.00 37.95 3.85
2524 2681 5.995897 GTGTTCAGCCTTAGGAAAACTAGAA 59.004 40.000 0.69 0.00 30.29 2.10
2527 2684 5.298989 TGTGTTCAGCCTTAGGAAAACTA 57.701 39.130 0.69 0.00 33.37 2.24
2528 2685 4.164843 TGTGTTCAGCCTTAGGAAAACT 57.835 40.909 0.69 0.00 33.37 2.66
2551 2708 3.286353 TGCAAGAACAATGTGGAGAACA 58.714 40.909 0.00 0.00 44.79 3.18
2575 2732 2.299013 TCACATCCTACTGACTTGCGTT 59.701 45.455 0.00 0.00 0.00 4.84
2613 2770 2.927014 GCGTGTCCTTTCTGTGACTAGG 60.927 54.545 0.00 0.00 32.67 3.02
2614 2771 2.288213 TGCGTGTCCTTTCTGTGACTAG 60.288 50.000 0.00 0.00 32.67 2.57
2615 2772 1.684450 TGCGTGTCCTTTCTGTGACTA 59.316 47.619 0.00 0.00 32.67 2.59
2616 2773 0.464036 TGCGTGTCCTTTCTGTGACT 59.536 50.000 0.00 0.00 32.67 3.41
2617 2774 1.461127 GATGCGTGTCCTTTCTGTGAC 59.539 52.381 0.00 0.00 0.00 3.67
2618 2775 1.344438 AGATGCGTGTCCTTTCTGTGA 59.656 47.619 0.00 0.00 0.00 3.58
2619 2776 1.800805 AGATGCGTGTCCTTTCTGTG 58.199 50.000 0.00 0.00 0.00 3.66
2620 2777 2.146342 CAAGATGCGTGTCCTTTCTGT 58.854 47.619 0.00 0.00 0.00 3.41
2621 2778 2.416747 TCAAGATGCGTGTCCTTTCTG 58.583 47.619 0.00 0.00 0.00 3.02
2622 2779 2.839486 TCAAGATGCGTGTCCTTTCT 57.161 45.000 0.00 0.00 0.00 2.52
2623 2780 3.395858 CATCAAGATGCGTGTCCTTTC 57.604 47.619 0.00 0.00 31.39 2.62
2634 2791 3.945921 ACATGGACTTCTGCATCAAGATG 59.054 43.478 11.55 5.70 41.60 2.90
2635 2792 4.197750 GACATGGACTTCTGCATCAAGAT 58.802 43.478 11.55 0.00 0.00 2.40
2636 2793 3.603532 GACATGGACTTCTGCATCAAGA 58.396 45.455 11.55 0.00 0.00 3.02
2637 2794 2.350804 CGACATGGACTTCTGCATCAAG 59.649 50.000 0.00 4.38 0.00 3.02
2638 2795 2.349590 CGACATGGACTTCTGCATCAA 58.650 47.619 0.00 0.00 0.00 2.57
2639 2796 1.405933 CCGACATGGACTTCTGCATCA 60.406 52.381 0.00 0.00 42.00 3.07
2640 2797 1.293924 CCGACATGGACTTCTGCATC 58.706 55.000 0.00 0.00 42.00 3.91
2641 2798 0.107508 CCCGACATGGACTTCTGCAT 60.108 55.000 0.00 0.00 42.00 3.96
2642 2799 1.296392 CCCGACATGGACTTCTGCA 59.704 57.895 0.00 0.00 42.00 4.41
2643 2800 2.109126 GCCCGACATGGACTTCTGC 61.109 63.158 0.00 0.00 42.00 4.26
2644 2801 1.811266 CGCCCGACATGGACTTCTG 60.811 63.158 0.00 0.00 42.00 3.02
2645 2802 1.949847 CTCGCCCGACATGGACTTCT 61.950 60.000 0.00 0.00 42.00 2.85
2646 2803 1.519455 CTCGCCCGACATGGACTTC 60.519 63.158 0.00 0.00 42.00 3.01
2647 2804 2.227089 GACTCGCCCGACATGGACTT 62.227 60.000 0.00 0.00 42.00 3.01
2648 2805 2.680352 ACTCGCCCGACATGGACT 60.680 61.111 0.00 0.00 42.00 3.85
2649 2806 2.202756 GACTCGCCCGACATGGAC 60.203 66.667 0.00 0.00 42.00 4.02
2650 2807 3.822192 CGACTCGCCCGACATGGA 61.822 66.667 0.00 0.00 42.00 3.41
2651 2808 4.873129 CCGACTCGCCCGACATGG 62.873 72.222 0.00 0.00 37.55 3.66
2652 2809 4.129737 ACCGACTCGCCCGACATG 62.130 66.667 0.00 0.00 0.00 3.21
2653 2810 3.823330 GACCGACTCGCCCGACAT 61.823 66.667 0.00 0.00 0.00 3.06
2655 2812 4.477975 CTGACCGACTCGCCCGAC 62.478 72.222 0.00 0.00 0.00 4.79
2656 2813 4.710167 TCTGACCGACTCGCCCGA 62.710 66.667 0.00 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.