Multiple sequence alignment - TraesCS3B01G198900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G198900 chr3B 100.000 2633 0 0 1 2633 226485373 226482741 0.000000e+00 4863.0
1 TraesCS3B01G198900 chr3B 90.950 221 19 1 1 220 146297020 146296800 1.980000e-76 296.0
2 TraesCS3B01G198900 chr3B 90.498 221 20 1 1 220 803359473 803359253 9.220000e-75 291.0
3 TraesCS3B01G198900 chr3D 95.707 955 28 2 774 1715 154612213 154613167 0.000000e+00 1524.0
4 TraesCS3B01G198900 chr3D 91.822 807 51 12 1827 2633 154613385 154614176 0.000000e+00 1110.0
5 TraesCS3B01G198900 chr3D 92.780 277 17 3 219 494 610203544 610203818 5.280000e-107 398.0
6 TraesCS3B01G198900 chr3D 91.968 249 12 5 510 751 154611978 154612225 2.510000e-90 342.0
7 TraesCS3B01G198900 chr3A 94.869 955 34 4 774 1715 173942087 173943039 0.000000e+00 1478.0
8 TraesCS3B01G198900 chr3A 92.317 794 42 7 1857 2633 173943311 173944102 0.000000e+00 1110.0
9 TraesCS3B01G198900 chr3A 93.502 277 17 1 221 496 382103490 382103214 6.780000e-111 411.0
10 TraesCS3B01G198900 chr3A 90.476 231 11 4 530 751 173941871 173942099 7.130000e-76 294.0
11 TraesCS3B01G198900 chr5A 94.485 272 14 1 222 493 6479848 6479578 4.050000e-113 418.0
12 TraesCS3B01G198900 chr1B 94.074 270 15 1 221 489 145451781 145452050 2.440000e-110 409.0
13 TraesCS3B01G198900 chr1B 85.965 57 6 2 2305 2360 547173223 547173168 2.830000e-05 60.2
14 TraesCS3B01G198900 chr7D 94.052 269 14 2 222 489 452445957 452445690 8.770000e-110 407.0
15 TraesCS3B01G198900 chr1D 93.750 272 15 2 219 489 419022110 419022380 8.770000e-110 407.0
16 TraesCS3B01G198900 chr7B 93.704 270 16 1 222 490 713117686 713117955 1.130000e-108 403.0
17 TraesCS3B01G198900 chr7B 90.455 220 21 0 1 220 714601032 714600813 9.220000e-75 291.0
18 TraesCS3B01G198900 chr5B 93.407 273 16 2 222 493 484894864 484894593 1.130000e-108 403.0
19 TraesCS3B01G198900 chr5B 91.509 212 17 1 1 211 437253242 437253453 9.220000e-75 291.0
20 TraesCS3B01G198900 chr5B 90.045 221 20 2 1 220 569216625 569216844 4.290000e-73 285.0
21 TraesCS3B01G198900 chr4D 92.806 278 17 3 218 493 485381358 485381634 1.470000e-107 399.0
22 TraesCS3B01G198900 chr2B 90.498 221 19 2 1 220 676939905 676939686 9.220000e-75 291.0
23 TraesCS3B01G198900 chrUn 90.045 221 21 1 1 220 359528527 359528307 4.290000e-73 285.0
24 TraesCS3B01G198900 chrUn 90.045 221 21 1 1 220 420460840 420460620 4.290000e-73 285.0
25 TraesCS3B01G198900 chr4B 90.045 221 20 2 1 220 646813624 646813405 4.290000e-73 285.0
26 TraesCS3B01G198900 chr1A 81.395 86 14 2 2323 2407 361384658 361384574 4.700000e-08 69.4
27 TraesCS3B01G198900 chr1A 97.222 36 1 0 2376 2411 533158289 533158324 7.870000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G198900 chr3B 226482741 226485373 2632 True 4863.000000 4863 100.000000 1 2633 1 chr3B.!!$R2 2632
1 TraesCS3B01G198900 chr3D 154611978 154614176 2198 False 992.000000 1524 93.165667 510 2633 3 chr3D.!!$F2 2123
2 TraesCS3B01G198900 chr3A 173941871 173944102 2231 False 960.666667 1478 92.554000 530 2633 3 chr3A.!!$F1 2103

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 248 0.030369 GTGCATGCTCTAGCCAATGC 59.97 55.0 20.33 16.33 45.25 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1753 1782 1.251251 GTGTCTGGCAGCCAAAGAAT 58.749 50.0 17.03 0.0 30.8 2.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.877611 AAGTTCGTCAAAACCTATCAACAT 57.122 33.333 0.00 0.00 0.00 2.71
24 25 6.241207 AGTTCGTCAAAACCTATCAACATG 57.759 37.500 0.00 0.00 0.00 3.21
25 26 5.181245 AGTTCGTCAAAACCTATCAACATGG 59.819 40.000 0.00 0.00 0.00 3.66
26 27 4.900684 TCGTCAAAACCTATCAACATGGA 58.099 39.130 0.00 0.00 0.00 3.41
27 28 5.309638 TCGTCAAAACCTATCAACATGGAA 58.690 37.500 0.00 0.00 0.00 3.53
28 29 5.943416 TCGTCAAAACCTATCAACATGGAAT 59.057 36.000 0.00 0.00 0.00 3.01
29 30 6.093495 TCGTCAAAACCTATCAACATGGAATC 59.907 38.462 0.00 0.00 0.00 2.52
30 31 6.094048 CGTCAAAACCTATCAACATGGAATCT 59.906 38.462 0.00 0.00 0.00 2.40
31 32 7.279981 CGTCAAAACCTATCAACATGGAATCTA 59.720 37.037 0.00 0.00 0.00 1.98
32 33 8.398665 GTCAAAACCTATCAACATGGAATCTAC 58.601 37.037 0.00 0.00 0.00 2.59
33 34 8.328758 TCAAAACCTATCAACATGGAATCTACT 58.671 33.333 0.00 0.00 0.00 2.57
34 35 8.960591 CAAAACCTATCAACATGGAATCTACTT 58.039 33.333 0.00 0.00 0.00 2.24
35 36 9.533831 AAAACCTATCAACATGGAATCTACTTT 57.466 29.630 0.00 0.00 0.00 2.66
36 37 9.533831 AAACCTATCAACATGGAATCTACTTTT 57.466 29.630 0.00 0.00 0.00 2.27
37 38 8.511604 ACCTATCAACATGGAATCTACTTTTG 57.488 34.615 0.00 0.00 0.00 2.44
38 39 8.328758 ACCTATCAACATGGAATCTACTTTTGA 58.671 33.333 0.00 0.00 0.00 2.69
39 40 9.177608 CCTATCAACATGGAATCTACTTTTGAA 57.822 33.333 0.00 0.00 0.00 2.69
41 42 8.868522 ATCAACATGGAATCTACTTTTGAAGA 57.131 30.769 0.00 0.00 0.00 2.87
42 43 8.099364 TCAACATGGAATCTACTTTTGAAGAC 57.901 34.615 0.00 0.00 0.00 3.01
43 44 7.174946 TCAACATGGAATCTACTTTTGAAGACC 59.825 37.037 0.00 0.00 0.00 3.85
44 45 6.784031 ACATGGAATCTACTTTTGAAGACCT 58.216 36.000 0.00 0.00 0.00 3.85
45 46 6.881602 ACATGGAATCTACTTTTGAAGACCTC 59.118 38.462 0.00 0.00 0.00 3.85
46 47 5.479306 TGGAATCTACTTTTGAAGACCTCG 58.521 41.667 0.00 0.00 0.00 4.63
47 48 5.245301 TGGAATCTACTTTTGAAGACCTCGA 59.755 40.000 0.00 0.00 0.00 4.04
48 49 5.577554 GGAATCTACTTTTGAAGACCTCGAC 59.422 44.000 0.00 0.00 0.00 4.20
49 50 5.723672 ATCTACTTTTGAAGACCTCGACA 57.276 39.130 0.00 0.00 0.00 4.35
50 51 4.868067 TCTACTTTTGAAGACCTCGACAC 58.132 43.478 0.00 0.00 0.00 3.67
51 52 2.470821 ACTTTTGAAGACCTCGACACG 58.529 47.619 0.00 0.00 0.00 4.49
52 53 2.100252 ACTTTTGAAGACCTCGACACGA 59.900 45.455 0.00 0.00 0.00 4.35
63 64 1.693467 TCGACACGAGGAATTCAACG 58.307 50.000 17.49 17.49 0.00 4.10
64 65 0.713883 CGACACGAGGAATTCAACGG 59.286 55.000 21.12 14.64 0.00 4.44
65 66 0.442699 GACACGAGGAATTCAACGGC 59.557 55.000 21.12 10.76 0.00 5.68
66 67 1.289109 ACACGAGGAATTCAACGGCG 61.289 55.000 21.12 4.80 0.00 6.46
67 68 1.011968 CACGAGGAATTCAACGGCGA 61.012 55.000 16.62 0.00 0.00 5.54
68 69 0.320073 ACGAGGAATTCAACGGCGAA 60.320 50.000 16.62 0.00 0.00 4.70
69 70 0.793861 CGAGGAATTCAACGGCGAAA 59.206 50.000 16.62 5.13 0.00 3.46
70 71 1.201921 CGAGGAATTCAACGGCGAAAG 60.202 52.381 16.62 2.29 0.00 2.62
87 88 4.608818 GAAAGCGGTTCGAAATTTGAAC 57.391 40.909 15.85 15.85 43.87 3.18
88 89 2.309898 AGCGGTTCGAAATTTGAACG 57.690 45.000 17.14 13.81 45.19 3.95
89 90 0.700764 GCGGTTCGAAATTTGAACGC 59.299 50.000 17.14 18.23 45.19 4.84
90 91 0.965014 CGGTTCGAAATTTGAACGCG 59.035 50.000 17.14 16.80 45.19 6.01
91 92 0.700764 GGTTCGAAATTTGAACGCGC 59.299 50.000 17.14 0.00 45.19 6.86
92 93 0.354319 GTTCGAAATTTGAACGCGCG 59.646 50.000 30.96 30.96 36.69 6.86
93 94 0.723129 TTCGAAATTTGAACGCGCGG 60.723 50.000 35.22 16.31 0.00 6.46
94 95 1.439693 CGAAATTTGAACGCGCGGT 60.440 52.632 35.22 31.35 0.00 5.68
95 96 0.994737 CGAAATTTGAACGCGCGGTT 60.995 50.000 35.22 24.43 42.96 4.44
96 97 1.125270 GAAATTTGAACGCGCGGTTT 58.875 45.000 35.22 20.74 39.50 3.27
97 98 2.308811 GAAATTTGAACGCGCGGTTTA 58.691 42.857 35.22 18.55 39.50 2.01
98 99 2.402640 AATTTGAACGCGCGGTTTAA 57.597 40.000 35.22 24.70 39.50 1.52
99 100 1.958417 ATTTGAACGCGCGGTTTAAG 58.042 45.000 35.22 4.42 39.50 1.85
100 101 0.935898 TTTGAACGCGCGGTTTAAGA 59.064 45.000 35.22 10.07 39.50 2.10
101 102 0.509499 TTGAACGCGCGGTTTAAGAG 59.491 50.000 35.22 2.69 39.50 2.85
102 103 0.318869 TGAACGCGCGGTTTAAGAGA 60.319 50.000 35.22 3.67 39.50 3.10
103 104 0.997196 GAACGCGCGGTTTAAGAGAT 59.003 50.000 35.22 5.42 39.50 2.75
104 105 2.187707 GAACGCGCGGTTTAAGAGATA 58.812 47.619 35.22 0.00 39.50 1.98
105 106 2.282701 ACGCGCGGTTTAAGAGATAA 57.717 45.000 35.22 0.00 0.00 1.75
106 107 2.609350 ACGCGCGGTTTAAGAGATAAA 58.391 42.857 35.22 0.00 0.00 1.40
107 108 2.995258 ACGCGCGGTTTAAGAGATAAAA 59.005 40.909 35.22 0.00 35.33 1.52
108 109 3.181527 ACGCGCGGTTTAAGAGATAAAAC 60.182 43.478 35.22 0.00 37.75 2.43
131 132 6.321873 CGTTTTGAATAAACGGATCTACGA 57.678 37.500 13.31 0.00 46.39 3.43
132 133 6.754206 CGTTTTGAATAAACGGATCTACGAA 58.246 36.000 13.31 0.00 46.39 3.85
133 134 7.228840 CGTTTTGAATAAACGGATCTACGAAA 58.771 34.615 13.31 0.00 46.39 3.46
134 135 7.741216 CGTTTTGAATAAACGGATCTACGAAAA 59.259 33.333 13.31 0.00 46.39 2.29
135 136 9.384682 GTTTTGAATAAACGGATCTACGAAAAA 57.615 29.630 0.00 0.00 37.61 1.94
161 162 5.485620 GGAAACTTCCAGGTTACGATAAGT 58.514 41.667 3.50 0.00 46.76 2.24
162 163 5.350640 GGAAACTTCCAGGTTACGATAAGTG 59.649 44.000 3.50 0.00 46.76 3.16
163 164 4.467198 ACTTCCAGGTTACGATAAGTGG 57.533 45.455 0.00 0.00 0.00 4.00
164 165 2.973694 TCCAGGTTACGATAAGTGGC 57.026 50.000 0.00 0.00 0.00 5.01
165 166 1.135527 TCCAGGTTACGATAAGTGGCG 59.864 52.381 0.00 0.00 0.00 5.69
166 167 1.567504 CAGGTTACGATAAGTGGCGG 58.432 55.000 0.00 0.00 0.00 6.13
167 168 1.135527 CAGGTTACGATAAGTGGCGGA 59.864 52.381 0.00 0.00 0.00 5.54
168 169 1.135721 AGGTTACGATAAGTGGCGGAC 59.864 52.381 0.00 0.00 0.00 4.79
169 170 1.135024 GGTTACGATAAGTGGCGGACA 60.135 52.381 0.00 0.00 0.00 4.02
170 171 2.482490 GGTTACGATAAGTGGCGGACAT 60.482 50.000 0.00 0.00 0.00 3.06
171 172 2.502213 TACGATAAGTGGCGGACATG 57.498 50.000 0.00 0.00 0.00 3.21
172 173 0.810031 ACGATAAGTGGCGGACATGC 60.810 55.000 0.00 0.00 0.00 4.06
173 174 0.809636 CGATAAGTGGCGGACATGCA 60.810 55.000 0.00 0.00 36.28 3.96
174 175 0.940126 GATAAGTGGCGGACATGCAG 59.060 55.000 0.00 0.00 36.28 4.41
175 176 1.097547 ATAAGTGGCGGACATGCAGC 61.098 55.000 0.00 0.00 36.28 5.25
194 195 2.972505 CGCCACTTGTCGCAACCT 60.973 61.111 0.00 0.00 0.00 3.50
195 196 2.639286 GCCACTTGTCGCAACCTG 59.361 61.111 0.00 0.00 0.00 4.00
196 197 2.908073 GCCACTTGTCGCAACCTGG 61.908 63.158 0.00 0.00 0.00 4.45
197 198 2.260869 CCACTTGTCGCAACCTGGG 61.261 63.158 0.00 0.00 0.00 4.45
198 199 2.113139 ACTTGTCGCAACCTGGGG 59.887 61.111 0.00 0.00 0.00 4.96
199 200 2.429930 CTTGTCGCAACCTGGGGA 59.570 61.111 0.00 0.00 0.00 4.81
200 201 1.672356 CTTGTCGCAACCTGGGGAG 60.672 63.158 0.00 0.00 0.00 4.30
201 202 3.190738 TTGTCGCAACCTGGGGAGG 62.191 63.158 0.00 0.00 0.00 4.30
202 203 3.637273 GTCGCAACCTGGGGAGGT 61.637 66.667 0.00 0.00 45.55 3.85
208 209 4.711700 ACCTGGGGAGGTTGGATT 57.288 55.556 0.00 0.00 39.57 3.01
209 210 2.087248 ACCTGGGGAGGTTGGATTG 58.913 57.895 0.00 0.00 39.57 2.67
210 211 0.477597 ACCTGGGGAGGTTGGATTGA 60.478 55.000 0.00 0.00 39.57 2.57
211 212 0.034089 CCTGGGGAGGTTGGATTGAC 60.034 60.000 0.00 0.00 0.00 3.18
212 213 0.034089 CTGGGGAGGTTGGATTGACC 60.034 60.000 0.00 0.00 37.44 4.02
218 219 2.380064 AGGTTGGATTGACCTTTGCA 57.620 45.000 0.00 0.00 45.06 4.08
219 220 2.676748 AGGTTGGATTGACCTTTGCAA 58.323 42.857 0.00 0.00 45.06 4.08
220 221 2.365293 AGGTTGGATTGACCTTTGCAAC 59.635 45.455 0.00 0.00 45.06 4.17
221 222 2.365293 GGTTGGATTGACCTTTGCAACT 59.635 45.455 0.00 0.00 41.97 3.16
222 223 3.383761 GTTGGATTGACCTTTGCAACTG 58.616 45.455 0.00 0.00 39.98 3.16
223 224 2.665165 TGGATTGACCTTTGCAACTGT 58.335 42.857 0.00 0.00 39.86 3.55
224 225 3.826524 TGGATTGACCTTTGCAACTGTA 58.173 40.909 0.00 0.00 39.86 2.74
225 226 3.820467 TGGATTGACCTTTGCAACTGTAG 59.180 43.478 0.00 0.00 39.86 2.74
226 227 4.072131 GGATTGACCTTTGCAACTGTAGA 58.928 43.478 0.00 0.00 35.41 2.59
227 228 4.518970 GGATTGACCTTTGCAACTGTAGAA 59.481 41.667 0.00 0.00 35.41 2.10
228 229 5.335191 GGATTGACCTTTGCAACTGTAGAAG 60.335 44.000 0.00 0.00 35.41 2.85
229 230 4.150897 TGACCTTTGCAACTGTAGAAGT 57.849 40.909 0.00 0.00 42.60 3.01
230 231 3.876914 TGACCTTTGCAACTGTAGAAGTG 59.123 43.478 0.00 0.00 39.81 3.16
231 232 2.618709 ACCTTTGCAACTGTAGAAGTGC 59.381 45.455 0.00 0.00 39.81 4.40
232 233 2.618241 CCTTTGCAACTGTAGAAGTGCA 59.382 45.455 0.00 0.25 39.81 4.57
233 234 3.254166 CCTTTGCAACTGTAGAAGTGCAT 59.746 43.478 0.00 0.00 40.34 3.96
234 235 3.902261 TTGCAACTGTAGAAGTGCATG 57.098 42.857 5.08 0.00 40.34 4.06
235 236 1.536766 TGCAACTGTAGAAGTGCATGC 59.463 47.619 11.82 11.82 39.81 4.06
236 237 1.808945 GCAACTGTAGAAGTGCATGCT 59.191 47.619 20.33 0.00 39.81 3.79
237 238 2.159599 GCAACTGTAGAAGTGCATGCTC 60.160 50.000 20.33 15.94 39.81 4.26
238 239 3.332919 CAACTGTAGAAGTGCATGCTCT 58.667 45.455 20.33 18.23 39.81 4.09
239 240 4.498241 CAACTGTAGAAGTGCATGCTCTA 58.502 43.478 21.70 15.62 39.81 2.43
240 241 4.383850 ACTGTAGAAGTGCATGCTCTAG 57.616 45.455 21.70 16.60 37.88 2.43
241 242 3.122297 CTGTAGAAGTGCATGCTCTAGC 58.878 50.000 21.70 16.29 42.50 3.42
242 243 2.159043 TGTAGAAGTGCATGCTCTAGCC 60.159 50.000 21.70 13.81 41.18 3.93
243 244 0.907486 AGAAGTGCATGCTCTAGCCA 59.093 50.000 21.70 0.00 41.18 4.75
244 245 1.280133 AGAAGTGCATGCTCTAGCCAA 59.720 47.619 21.70 0.00 41.18 4.52
245 246 2.092538 AGAAGTGCATGCTCTAGCCAAT 60.093 45.455 21.70 5.92 41.18 3.16
246 247 1.676746 AGTGCATGCTCTAGCCAATG 58.323 50.000 20.22 0.00 41.18 2.82
247 248 0.030369 GTGCATGCTCTAGCCAATGC 59.970 55.000 20.33 16.33 45.25 3.56
248 249 2.411535 GCATGCTCTAGCCAATGCA 58.588 52.632 11.37 0.00 44.74 3.96
249 250 0.742505 GCATGCTCTAGCCAATGCAA 59.257 50.000 11.37 0.00 44.74 4.08
250 251 1.535437 GCATGCTCTAGCCAATGCAAC 60.535 52.381 11.37 2.38 44.74 4.17
251 252 1.066605 CATGCTCTAGCCAATGCAACC 59.933 52.381 0.00 0.00 41.13 3.77
252 253 0.038021 TGCTCTAGCCAATGCAACCA 59.962 50.000 0.00 0.00 41.13 3.67
253 254 1.176527 GCTCTAGCCAATGCAACCAA 58.823 50.000 0.00 0.00 41.13 3.67
254 255 1.545582 GCTCTAGCCAATGCAACCAAA 59.454 47.619 0.00 0.00 41.13 3.28
255 256 2.029110 GCTCTAGCCAATGCAACCAAAA 60.029 45.455 0.00 0.00 41.13 2.44
256 257 3.841643 CTCTAGCCAATGCAACCAAAAG 58.158 45.455 0.00 0.00 41.13 2.27
257 258 3.495331 TCTAGCCAATGCAACCAAAAGA 58.505 40.909 0.00 0.00 41.13 2.52
258 259 2.531522 AGCCAATGCAACCAAAAGAC 57.468 45.000 0.00 0.00 41.13 3.01
259 260 1.070601 AGCCAATGCAACCAAAAGACC 59.929 47.619 0.00 0.00 41.13 3.85
260 261 1.782044 CCAATGCAACCAAAAGACCG 58.218 50.000 0.00 0.00 0.00 4.79
261 262 1.339610 CCAATGCAACCAAAAGACCGA 59.660 47.619 0.00 0.00 0.00 4.69
262 263 2.029110 CCAATGCAACCAAAAGACCGAT 60.029 45.455 0.00 0.00 0.00 4.18
263 264 3.244976 CAATGCAACCAAAAGACCGATC 58.755 45.455 0.00 0.00 0.00 3.69
264 265 2.270352 TGCAACCAAAAGACCGATCT 57.730 45.000 0.00 0.00 36.42 2.75
265 266 1.879380 TGCAACCAAAAGACCGATCTG 59.121 47.619 0.00 0.00 34.48 2.90
266 267 1.200020 GCAACCAAAAGACCGATCTGG 59.800 52.381 2.55 2.55 46.41 3.86
276 277 1.742768 CCGATCTGGTGGTAGAGGC 59.257 63.158 0.00 0.00 0.00 4.70
277 278 0.757188 CCGATCTGGTGGTAGAGGCT 60.757 60.000 0.00 0.00 0.00 4.58
278 279 1.478837 CCGATCTGGTGGTAGAGGCTA 60.479 57.143 0.00 0.00 0.00 3.93
279 280 1.883275 CGATCTGGTGGTAGAGGCTAG 59.117 57.143 0.00 0.00 0.00 3.42
280 281 2.243810 GATCTGGTGGTAGAGGCTAGG 58.756 57.143 0.00 0.00 0.00 3.02
281 282 0.397254 TCTGGTGGTAGAGGCTAGGC 60.397 60.000 8.55 8.55 0.00 3.93
282 283 0.687757 CTGGTGGTAGAGGCTAGGCA 60.688 60.000 19.70 0.00 0.00 4.75
283 284 0.687757 TGGTGGTAGAGGCTAGGCAG 60.688 60.000 19.70 0.00 0.00 4.85
297 298 2.979814 AGGCAGCACATTATACGTCA 57.020 45.000 0.00 0.00 0.00 4.35
298 299 3.260475 AGGCAGCACATTATACGTCAA 57.740 42.857 0.00 0.00 0.00 3.18
299 300 2.936498 AGGCAGCACATTATACGTCAAC 59.064 45.455 0.00 0.00 0.00 3.18
300 301 2.675844 GGCAGCACATTATACGTCAACA 59.324 45.455 0.00 0.00 0.00 3.33
301 302 3.485216 GGCAGCACATTATACGTCAACAC 60.485 47.826 0.00 0.00 0.00 3.32
302 303 3.370978 GCAGCACATTATACGTCAACACT 59.629 43.478 0.00 0.00 0.00 3.55
303 304 4.492570 GCAGCACATTATACGTCAACACTC 60.493 45.833 0.00 0.00 0.00 3.51
304 305 4.032900 CAGCACATTATACGTCAACACTCC 59.967 45.833 0.00 0.00 0.00 3.85
305 306 3.308866 GCACATTATACGTCAACACTCCC 59.691 47.826 0.00 0.00 0.00 4.30
306 307 3.869246 CACATTATACGTCAACACTCCCC 59.131 47.826 0.00 0.00 0.00 4.81
307 308 3.118519 ACATTATACGTCAACACTCCCCC 60.119 47.826 0.00 0.00 0.00 5.40
308 309 2.537633 TATACGTCAACACTCCCCCT 57.462 50.000 0.00 0.00 0.00 4.79
309 310 1.192428 ATACGTCAACACTCCCCCTC 58.808 55.000 0.00 0.00 0.00 4.30
310 311 0.178955 TACGTCAACACTCCCCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
311 312 1.004918 CGTCAACACTCCCCCTCAC 60.005 63.158 0.00 0.00 0.00 3.51
312 313 1.004918 GTCAACACTCCCCCTCACG 60.005 63.158 0.00 0.00 0.00 4.35
313 314 1.458777 TCAACACTCCCCCTCACGT 60.459 57.895 0.00 0.00 0.00 4.49
314 315 1.301716 CAACACTCCCCCTCACGTG 60.302 63.158 9.94 9.94 0.00 4.49
315 316 1.764854 AACACTCCCCCTCACGTGT 60.765 57.895 16.51 0.00 41.92 4.49
316 317 2.040009 AACACTCCCCCTCACGTGTG 62.040 60.000 16.51 13.39 40.19 3.82
317 318 2.923035 ACTCCCCCTCACGTGTGG 60.923 66.667 26.15 26.15 0.00 4.17
318 319 4.394712 CTCCCCCTCACGTGTGGC 62.395 72.222 27.37 0.00 0.00 5.01
319 320 4.954118 TCCCCCTCACGTGTGGCT 62.954 66.667 27.37 0.00 0.00 4.75
320 321 4.394712 CCCCCTCACGTGTGGCTC 62.395 72.222 27.37 0.00 0.00 4.70
321 322 4.394712 CCCCTCACGTGTGGCTCC 62.395 72.222 27.37 0.00 0.00 4.70
322 323 4.394712 CCCTCACGTGTGGCTCCC 62.395 72.222 27.37 0.00 0.00 4.30
323 324 3.314331 CCTCACGTGTGGCTCCCT 61.314 66.667 22.53 0.00 0.00 4.20
324 325 2.262915 CTCACGTGTGGCTCCCTC 59.737 66.667 16.51 0.00 0.00 4.30
325 326 2.523168 TCACGTGTGGCTCCCTCA 60.523 61.111 16.51 0.00 0.00 3.86
326 327 2.047844 CACGTGTGGCTCCCTCAG 60.048 66.667 7.58 0.00 0.00 3.35
327 328 3.314331 ACGTGTGGCTCCCTCAGG 61.314 66.667 0.00 4.93 38.38 3.86
333 334 3.741325 GGCTCCCTCAGGCCTAAA 58.259 61.111 3.98 0.00 44.48 1.85
334 335 1.224870 GGCTCCCTCAGGCCTAAAC 59.775 63.158 3.98 0.00 44.48 2.01
335 336 1.153349 GCTCCCTCAGGCCTAAACG 60.153 63.158 3.98 0.00 0.00 3.60
336 337 1.900545 GCTCCCTCAGGCCTAAACGT 61.901 60.000 3.98 0.00 0.00 3.99
337 338 0.108138 CTCCCTCAGGCCTAAACGTG 60.108 60.000 3.98 0.00 0.00 4.49
338 339 1.078426 CCCTCAGGCCTAAACGTGG 60.078 63.158 3.98 3.09 0.00 4.94
339 340 1.550130 CCCTCAGGCCTAAACGTGGA 61.550 60.000 3.98 0.00 0.00 4.02
340 341 0.391263 CCTCAGGCCTAAACGTGGAC 60.391 60.000 3.98 0.00 0.00 4.02
341 342 0.391263 CTCAGGCCTAAACGTGGACC 60.391 60.000 3.98 0.00 31.51 4.46
342 343 1.740296 CAGGCCTAAACGTGGACCG 60.740 63.158 3.98 0.00 44.03 4.79
343 344 1.909781 AGGCCTAAACGTGGACCGA 60.910 57.895 1.29 0.00 40.70 4.69
344 345 1.004679 GGCCTAAACGTGGACCGAA 60.005 57.895 0.00 0.00 40.70 4.30
345 346 0.603439 GGCCTAAACGTGGACCGAAA 60.603 55.000 0.00 0.00 40.70 3.46
346 347 0.794473 GCCTAAACGTGGACCGAAAG 59.206 55.000 0.00 0.00 40.70 2.62
347 348 1.875157 GCCTAAACGTGGACCGAAAGT 60.875 52.381 0.00 0.00 40.70 2.66
348 349 1.796459 CCTAAACGTGGACCGAAAGTG 59.204 52.381 0.00 0.00 40.70 3.16
349 350 1.796459 CTAAACGTGGACCGAAAGTGG 59.204 52.381 0.00 0.00 40.70 4.00
350 351 0.816421 AAACGTGGACCGAAAGTGGG 60.816 55.000 0.00 0.00 40.70 4.61
351 352 3.047877 CGTGGACCGAAAGTGGGC 61.048 66.667 0.00 0.00 39.56 5.36
352 353 2.430367 GTGGACCGAAAGTGGGCT 59.570 61.111 0.00 0.00 37.14 5.19
353 354 1.966451 GTGGACCGAAAGTGGGCTG 60.966 63.158 0.00 0.00 37.14 4.85
354 355 3.056328 GGACCGAAAGTGGGCTGC 61.056 66.667 0.00 0.00 37.14 5.25
355 356 2.281484 GACCGAAAGTGGGCTGCA 60.281 61.111 0.50 0.00 32.64 4.41
356 357 1.896660 GACCGAAAGTGGGCTGCAA 60.897 57.895 0.50 0.00 32.64 4.08
357 358 1.228552 ACCGAAAGTGGGCTGCAAT 60.229 52.632 0.50 0.00 0.00 3.56
358 359 0.827507 ACCGAAAGTGGGCTGCAATT 60.828 50.000 0.50 0.00 0.00 2.32
359 360 0.318120 CCGAAAGTGGGCTGCAATTT 59.682 50.000 0.50 0.00 0.00 1.82
360 361 1.270252 CCGAAAGTGGGCTGCAATTTT 60.270 47.619 0.50 0.00 0.00 1.82
361 362 2.029470 CCGAAAGTGGGCTGCAATTTTA 60.029 45.455 0.50 0.00 0.00 1.52
362 363 3.553922 CCGAAAGTGGGCTGCAATTTTAA 60.554 43.478 0.50 0.00 0.00 1.52
363 364 4.244862 CGAAAGTGGGCTGCAATTTTAAT 58.755 39.130 0.50 0.00 0.00 1.40
364 365 4.690280 CGAAAGTGGGCTGCAATTTTAATT 59.310 37.500 0.50 0.00 0.00 1.40
365 366 5.389725 CGAAAGTGGGCTGCAATTTTAATTG 60.390 40.000 10.17 10.17 46.55 2.32
373 374 0.649993 CAATTTTAATTGCGCCGGCC 59.350 50.000 23.46 14.70 39.29 6.13
374 375 0.804156 AATTTTAATTGCGCCGGCCG 60.804 50.000 23.46 21.04 38.85 6.13
375 376 2.621371 ATTTTAATTGCGCCGGCCGG 62.621 55.000 40.26 40.26 38.85 6.13
385 386 4.016706 CCGGCCGGGTCTTGAACT 62.017 66.667 37.42 0.00 0.00 3.01
386 387 2.434359 CGGCCGGGTCTTGAACTC 60.434 66.667 20.10 0.00 0.00 3.01
387 388 2.747686 GGCCGGGTCTTGAACTCA 59.252 61.111 2.18 0.00 0.00 3.41
388 389 1.072505 GGCCGGGTCTTGAACTCAA 59.927 57.895 2.18 0.00 0.00 3.02
411 412 6.662865 AGACCTCTTGACTATGATACCATG 57.337 41.667 0.00 0.00 34.31 3.66
412 413 6.139671 AGACCTCTTGACTATGATACCATGT 58.860 40.000 0.00 0.00 34.31 3.21
413 414 7.298374 AGACCTCTTGACTATGATACCATGTA 58.702 38.462 0.00 0.00 34.31 2.29
414 415 7.450014 AGACCTCTTGACTATGATACCATGTAG 59.550 40.741 0.00 0.00 34.31 2.74
415 416 7.298374 ACCTCTTGACTATGATACCATGTAGA 58.702 38.462 0.00 0.00 34.31 2.59
416 417 7.785028 ACCTCTTGACTATGATACCATGTAGAA 59.215 37.037 0.00 0.00 34.31 2.10
417 418 8.303156 CCTCTTGACTATGATACCATGTAGAAG 58.697 40.741 0.00 0.00 34.31 2.85
418 419 8.768501 TCTTGACTATGATACCATGTAGAAGT 57.231 34.615 0.00 0.00 34.31 3.01
419 420 8.633561 TCTTGACTATGATACCATGTAGAAGTG 58.366 37.037 0.00 0.00 34.31 3.16
420 421 6.749139 TGACTATGATACCATGTAGAAGTGC 58.251 40.000 0.00 0.00 34.31 4.40
421 422 6.323739 TGACTATGATACCATGTAGAAGTGCA 59.676 38.462 0.00 0.00 34.31 4.57
422 423 7.015584 TGACTATGATACCATGTAGAAGTGCAT 59.984 37.037 0.00 0.00 34.31 3.96
423 424 7.157347 ACTATGATACCATGTAGAAGTGCATG 58.843 38.462 0.00 0.00 44.17 4.06
424 425 5.357742 TGATACCATGTAGAAGTGCATGT 57.642 39.130 0.00 0.00 43.32 3.21
425 426 5.744171 TGATACCATGTAGAAGTGCATGTT 58.256 37.500 0.00 0.00 43.32 2.71
426 427 5.817296 TGATACCATGTAGAAGTGCATGTTC 59.183 40.000 0.00 0.00 43.32 3.18
427 428 4.292186 ACCATGTAGAAGTGCATGTTCT 57.708 40.909 16.08 16.08 43.32 3.01
428 429 5.420725 ACCATGTAGAAGTGCATGTTCTA 57.579 39.130 14.43 14.43 43.32 2.10
429 430 5.423015 ACCATGTAGAAGTGCATGTTCTAG 58.577 41.667 17.44 10.84 43.32 2.43
430 431 4.272018 CCATGTAGAAGTGCATGTTCTAGC 59.728 45.833 17.44 13.66 43.32 3.42
431 432 3.861840 TGTAGAAGTGCATGTTCTAGCC 58.138 45.455 17.44 10.30 37.22 3.93
432 433 3.260632 TGTAGAAGTGCATGTTCTAGCCA 59.739 43.478 17.44 12.12 37.22 4.75
433 434 3.423539 AGAAGTGCATGTTCTAGCCAA 57.576 42.857 11.52 0.00 32.29 4.52
434 435 3.960571 AGAAGTGCATGTTCTAGCCAAT 58.039 40.909 11.52 0.00 32.29 3.16
435 436 3.693085 AGAAGTGCATGTTCTAGCCAATG 59.307 43.478 11.52 0.00 32.29 2.82
436 437 1.747355 AGTGCATGTTCTAGCCAATGC 59.253 47.619 13.36 13.36 35.77 3.56
437 438 1.473677 GTGCATGTTCTAGCCAATGCA 59.526 47.619 17.03 17.03 41.91 3.96
438 439 2.094597 GTGCATGTTCTAGCCAATGCAA 60.095 45.455 20.53 8.48 44.98 4.08
439 440 2.094597 TGCATGTTCTAGCCAATGCAAC 60.095 45.455 18.06 3.24 41.32 4.17
440 441 2.736400 GCATGTTCTAGCCAATGCAACC 60.736 50.000 14.67 0.00 41.13 3.77
441 442 2.284754 TGTTCTAGCCAATGCAACCA 57.715 45.000 0.00 0.00 41.13 3.67
442 443 2.591923 TGTTCTAGCCAATGCAACCAA 58.408 42.857 0.00 0.00 41.13 3.67
443 444 2.961741 TGTTCTAGCCAATGCAACCAAA 59.038 40.909 0.00 0.00 41.13 3.28
444 445 3.005684 TGTTCTAGCCAATGCAACCAAAG 59.994 43.478 0.00 0.00 41.13 2.77
445 446 3.153369 TCTAGCCAATGCAACCAAAGA 57.847 42.857 0.00 0.00 41.13 2.52
446 447 2.819608 TCTAGCCAATGCAACCAAAGAC 59.180 45.455 0.00 0.00 41.13 3.01
447 448 1.708341 AGCCAATGCAACCAAAGACT 58.292 45.000 0.00 0.00 41.13 3.24
448 449 1.342174 AGCCAATGCAACCAAAGACTG 59.658 47.619 0.00 0.00 41.13 3.51
449 450 1.340889 GCCAATGCAACCAAAGACTGA 59.659 47.619 0.00 0.00 37.47 3.41
450 451 2.028748 GCCAATGCAACCAAAGACTGAT 60.029 45.455 0.00 0.00 37.47 2.90
451 452 3.841643 CCAATGCAACCAAAGACTGATC 58.158 45.455 0.00 0.00 0.00 2.92
452 453 3.508793 CCAATGCAACCAAAGACTGATCT 59.491 43.478 0.00 0.00 36.42 2.75
453 454 4.482386 CAATGCAACCAAAGACTGATCTG 58.518 43.478 0.00 0.00 34.48 2.90
454 455 2.507484 TGCAACCAAAGACTGATCTGG 58.493 47.619 4.49 0.00 34.48 3.86
455 456 2.158623 TGCAACCAAAGACTGATCTGGT 60.159 45.455 4.49 0.35 33.61 4.00
456 457 2.227388 GCAACCAAAGACTGATCTGGTG 59.773 50.000 3.05 0.45 32.76 4.17
457 458 3.743521 CAACCAAAGACTGATCTGGTGA 58.256 45.455 3.05 0.00 32.76 4.02
458 459 4.330250 CAACCAAAGACTGATCTGGTGAT 58.670 43.478 3.05 0.00 32.76 3.06
459 460 5.491070 CAACCAAAGACTGATCTGGTGATA 58.509 41.667 3.05 0.00 32.76 2.15
460 461 5.762179 ACCAAAGACTGATCTGGTGATAA 57.238 39.130 4.49 0.00 31.53 1.75
461 462 6.126863 ACCAAAGACTGATCTGGTGATAAA 57.873 37.500 4.49 0.00 31.53 1.40
462 463 6.176183 ACCAAAGACTGATCTGGTGATAAAG 58.824 40.000 4.49 0.00 31.53 1.85
463 464 5.587844 CCAAAGACTGATCTGGTGATAAAGG 59.412 44.000 4.49 0.00 34.48 3.11
464 465 4.414337 AGACTGATCTGGTGATAAAGGC 57.586 45.455 4.49 0.00 32.29 4.35
465 466 4.036518 AGACTGATCTGGTGATAAAGGCT 58.963 43.478 4.49 0.00 32.78 4.58
466 467 5.211973 AGACTGATCTGGTGATAAAGGCTA 58.788 41.667 4.49 0.00 34.72 3.93
467 468 5.304101 AGACTGATCTGGTGATAAAGGCTAG 59.696 44.000 4.49 0.00 34.72 3.42
468 469 4.346418 ACTGATCTGGTGATAAAGGCTAGG 59.654 45.833 4.49 0.00 32.19 3.02
469 470 3.071602 TGATCTGGTGATAAAGGCTAGGC 59.928 47.826 8.55 8.55 32.19 3.93
470 471 2.477245 TCTGGTGATAAAGGCTAGGCA 58.523 47.619 19.70 0.00 0.00 4.75
471 472 2.435805 TCTGGTGATAAAGGCTAGGCAG 59.564 50.000 19.70 3.63 0.00 4.85
485 486 2.979814 AGGCAGCACATTATACGTCA 57.020 45.000 0.00 0.00 0.00 4.35
486 487 3.260475 AGGCAGCACATTATACGTCAA 57.740 42.857 0.00 0.00 0.00 3.18
487 488 2.936498 AGGCAGCACATTATACGTCAAC 59.064 45.455 0.00 0.00 0.00 3.18
488 489 2.675844 GGCAGCACATTATACGTCAACA 59.324 45.455 0.00 0.00 0.00 3.33
489 490 3.242413 GGCAGCACATTATACGTCAACAG 60.242 47.826 0.00 0.00 0.00 3.16
490 491 3.785505 GCAGCACATTATACGTCAACAGC 60.786 47.826 0.00 0.00 0.00 4.40
491 492 3.370672 CAGCACATTATACGTCAACAGCA 59.629 43.478 0.00 0.00 0.00 4.41
492 493 4.000325 AGCACATTATACGTCAACAGCAA 59.000 39.130 0.00 0.00 0.00 3.91
493 494 4.088648 GCACATTATACGTCAACAGCAAC 58.911 43.478 0.00 0.00 0.00 4.17
494 495 4.322934 CACATTATACGTCAACAGCAACG 58.677 43.478 0.00 0.00 44.22 4.10
495 496 4.090786 CACATTATACGTCAACAGCAACGA 59.909 41.667 0.00 0.00 41.29 3.85
496 497 4.687018 ACATTATACGTCAACAGCAACGAA 59.313 37.500 0.00 0.00 41.29 3.85
497 498 5.350365 ACATTATACGTCAACAGCAACGAAT 59.650 36.000 0.00 0.00 41.29 3.34
498 499 6.532302 ACATTATACGTCAACAGCAACGAATA 59.468 34.615 0.00 0.00 41.29 1.75
499 500 4.835199 ATACGTCAACAGCAACGAATAC 57.165 40.909 0.00 0.00 41.29 1.89
500 501 2.750948 ACGTCAACAGCAACGAATACT 58.249 42.857 1.52 0.00 41.29 2.12
501 502 3.128349 ACGTCAACAGCAACGAATACTT 58.872 40.909 1.52 0.00 41.29 2.24
502 503 3.183775 ACGTCAACAGCAACGAATACTTC 59.816 43.478 1.52 0.00 41.29 3.01
503 504 3.428870 CGTCAACAGCAACGAATACTTCT 59.571 43.478 0.00 0.00 41.29 2.85
504 505 4.433022 CGTCAACAGCAACGAATACTTCTC 60.433 45.833 0.00 0.00 41.29 2.87
505 506 4.447724 GTCAACAGCAACGAATACTTCTCA 59.552 41.667 0.00 0.00 0.00 3.27
506 507 5.050363 GTCAACAGCAACGAATACTTCTCAA 60.050 40.000 0.00 0.00 0.00 3.02
507 508 4.992381 ACAGCAACGAATACTTCTCAAC 57.008 40.909 0.00 0.00 0.00 3.18
508 509 4.632153 ACAGCAACGAATACTTCTCAACT 58.368 39.130 0.00 0.00 0.00 3.16
539 540 1.138266 TCGATCCCGGTTCCTTTGATC 59.862 52.381 0.00 2.48 36.24 2.92
552 554 6.223852 GTTCCTTTGATCGCTCTTCCATATA 58.776 40.000 0.00 0.00 0.00 0.86
564 566 4.878439 TCTTCCATATACCCATTTCGACG 58.122 43.478 0.00 0.00 0.00 5.12
597 602 0.764271 TCTGCAATGTGGTGTGGAGA 59.236 50.000 0.00 0.00 39.57 3.71
612 617 5.278022 GGTGTGGAGACTGACTTGAAAATTC 60.278 44.000 0.00 0.00 0.00 2.17
652 664 7.997482 ACCATTGATTCTTGAGAATGATTCAG 58.003 34.615 10.77 0.00 44.14 3.02
744 760 3.377253 AACTCACCATACCTACTCCGA 57.623 47.619 0.00 0.00 0.00 4.55
745 761 2.933573 ACTCACCATACCTACTCCGAG 58.066 52.381 0.00 0.00 0.00 4.63
746 762 1.609555 CTCACCATACCTACTCCGAGC 59.390 57.143 0.00 0.00 0.00 5.03
747 763 0.674534 CACCATACCTACTCCGAGCC 59.325 60.000 0.00 0.00 0.00 4.70
748 764 0.822532 ACCATACCTACTCCGAGCCG 60.823 60.000 0.00 0.00 0.00 5.52
749 765 1.286260 CATACCTACTCCGAGCCGC 59.714 63.158 0.00 0.00 0.00 6.53
750 766 2.259439 ATACCTACTCCGAGCCGCG 61.259 63.158 0.00 0.00 40.47 6.46
751 767 2.671370 ATACCTACTCCGAGCCGCGA 62.671 60.000 8.23 0.00 44.57 5.87
752 768 3.955101 CCTACTCCGAGCCGCGAG 61.955 72.222 8.23 0.00 44.57 5.03
753 769 3.203412 CTACTCCGAGCCGCGAGT 61.203 66.667 8.23 4.03 44.57 4.18
754 770 2.749044 TACTCCGAGCCGCGAGTT 60.749 61.111 8.23 0.00 44.57 3.01
755 771 2.649843 CTACTCCGAGCCGCGAGTTC 62.650 65.000 8.23 4.37 44.57 3.01
756 772 3.816524 CTCCGAGCCGCGAGTTCT 61.817 66.667 8.23 0.00 44.57 3.01
757 773 2.437180 TCCGAGCCGCGAGTTCTA 60.437 61.111 8.23 0.00 44.57 2.10
758 774 1.989966 CTCCGAGCCGCGAGTTCTAA 61.990 60.000 8.23 0.00 44.57 2.10
759 775 1.153901 CCGAGCCGCGAGTTCTAAA 60.154 57.895 8.23 0.00 44.57 1.85
760 776 0.734942 CCGAGCCGCGAGTTCTAAAA 60.735 55.000 8.23 0.00 44.57 1.52
761 777 1.065358 CGAGCCGCGAGTTCTAAAAA 58.935 50.000 8.23 0.00 44.57 1.94
828 844 2.826128 CAGACAGTACAGTTGGGAGCTA 59.174 50.000 0.00 0.00 0.00 3.32
872 888 3.257375 ACCACTAAACTACTCATCACGCA 59.743 43.478 0.00 0.00 0.00 5.24
907 923 7.194962 GCTTAACAGCTTATACTCGTACTTCT 58.805 38.462 0.00 0.00 43.51 2.85
933 949 1.747745 CCGACCCCGCCCTTAAAAG 60.748 63.158 0.00 0.00 0.00 2.27
1097 1126 2.657237 CTCCTCCAAGAACCGCGT 59.343 61.111 4.92 0.00 0.00 6.01
1320 1349 2.420890 GAGATCCTGAGCCTGGCG 59.579 66.667 13.96 0.00 0.00 5.69
1344 1373 0.973496 GCTTCTTCCCGTCTCCCTCT 60.973 60.000 0.00 0.00 0.00 3.69
1353 1382 3.071206 TCTCCCTCTGCGTCAGCC 61.071 66.667 2.45 0.00 44.33 4.85
1669 1698 3.260884 GTGGAGAATATAGATTGGGCCGA 59.739 47.826 0.00 0.00 0.00 5.54
1670 1699 3.515502 TGGAGAATATAGATTGGGCCGAG 59.484 47.826 0.00 0.00 0.00 4.63
1672 1701 4.382147 GGAGAATATAGATTGGGCCGAGAC 60.382 50.000 0.00 0.00 0.00 3.36
1674 1703 3.963428 ATATAGATTGGGCCGAGACAC 57.037 47.619 0.00 0.00 0.00 3.67
1678 1707 1.003355 ATTGGGCCGAGACACTGTG 60.003 57.895 6.19 6.19 0.00 3.66
1715 1744 2.685897 CGAAGTGGAGTTTTGGTCCAAA 59.314 45.455 13.26 13.26 45.85 3.28
1717 1746 3.094484 AGTGGAGTTTTGGTCCAAACA 57.906 42.857 16.88 8.75 45.85 2.83
1719 1748 3.384467 AGTGGAGTTTTGGTCCAAACATG 59.616 43.478 16.88 0.00 45.85 3.21
1720 1749 3.132111 GTGGAGTTTTGGTCCAAACATGT 59.868 43.478 16.88 0.00 45.85 3.21
1721 1750 3.772025 TGGAGTTTTGGTCCAAACATGTT 59.228 39.130 16.88 4.92 41.32 2.71
1722 1751 4.142049 TGGAGTTTTGGTCCAAACATGTTC 60.142 41.667 16.88 9.60 41.32 3.18
1723 1752 4.099419 GGAGTTTTGGTCCAAACATGTTCT 59.901 41.667 16.88 8.37 32.79 3.01
1724 1753 5.009854 AGTTTTGGTCCAAACATGTTCTG 57.990 39.130 16.88 11.84 32.79 3.02
1725 1754 3.451141 TTTGGTCCAAACATGTTCTGC 57.549 42.857 13.26 2.95 0.00 4.26
1726 1755 2.363306 TGGTCCAAACATGTTCTGCT 57.637 45.000 12.39 0.00 0.00 4.24
1727 1756 2.665165 TGGTCCAAACATGTTCTGCTT 58.335 42.857 12.39 0.00 0.00 3.91
1728 1757 3.030291 TGGTCCAAACATGTTCTGCTTT 58.970 40.909 12.39 0.00 0.00 3.51
1729 1758 3.450457 TGGTCCAAACATGTTCTGCTTTT 59.550 39.130 12.39 0.00 0.00 2.27
1733 1762 6.294731 GGTCCAAACATGTTCTGCTTTTATCT 60.295 38.462 12.39 0.00 0.00 1.98
1734 1763 7.147976 GTCCAAACATGTTCTGCTTTTATCTT 58.852 34.615 12.39 0.00 0.00 2.40
1736 1765 8.203485 TCCAAACATGTTCTGCTTTTATCTTTT 58.797 29.630 12.39 0.00 0.00 2.27
1765 1794 5.745769 GTGAGCTTTTATATTCTTTGGCTGC 59.254 40.000 0.00 0.00 0.00 5.25
1766 1795 5.163519 TGAGCTTTTATATTCTTTGGCTGCC 60.164 40.000 12.87 12.87 0.00 4.85
1772 1801 1.251251 ATTCTTTGGCTGCCAGACAC 58.749 50.000 22.17 0.00 29.12 3.67
1785 1814 2.287009 GCCAGACACCAGAAACTTTTCG 60.287 50.000 0.00 0.00 41.92 3.46
1786 1815 2.943033 CCAGACACCAGAAACTTTTCGT 59.057 45.455 0.00 0.00 41.92 3.85
1787 1816 3.242739 CCAGACACCAGAAACTTTTCGTG 60.243 47.826 7.70 7.70 41.92 4.35
1788 1817 3.621268 CAGACACCAGAAACTTTTCGTGA 59.379 43.478 13.45 0.00 41.92 4.35
1790 1819 4.273480 AGACACCAGAAACTTTTCGTGATG 59.727 41.667 13.45 5.75 41.92 3.07
1791 1820 4.196193 ACACCAGAAACTTTTCGTGATGA 58.804 39.130 13.45 0.00 41.92 2.92
1792 1821 4.821805 ACACCAGAAACTTTTCGTGATGAT 59.178 37.500 13.45 0.00 41.92 2.45
1794 1823 6.073222 ACACCAGAAACTTTTCGTGATGATAC 60.073 38.462 13.45 0.00 41.92 2.24
1796 1825 6.147821 ACCAGAAACTTTTCGTGATGATACAG 59.852 38.462 0.00 0.00 41.92 2.74
1797 1826 6.017933 CAGAAACTTTTCGTGATGATACAGC 58.982 40.000 0.00 0.00 41.92 4.40
1850 2020 9.720769 AAAACTTCTTATATTTTGAGACCGAGA 57.279 29.630 0.00 0.00 0.00 4.04
1851 2021 9.892130 AAACTTCTTATATTTTGAGACCGAGAT 57.108 29.630 0.00 0.00 0.00 2.75
1877 2048 7.727181 AGTAGGAGTAACATATAAGGTGCAAG 58.273 38.462 0.00 0.00 0.00 4.01
1879 2050 4.211374 GGAGTAACATATAAGGTGCAAGCG 59.789 45.833 0.00 0.00 40.95 4.68
1923 2094 9.319060 ACATCCTAGAGCATTTTGATATCTAGA 57.681 33.333 3.98 0.00 41.19 2.43
1938 2109 2.995746 TCTAGATCCATGAATGCCCCT 58.004 47.619 0.00 0.00 0.00 4.79
1963 2134 6.829849 ACCATTGTCTTCATCCAAATGTTTT 58.170 32.000 0.00 0.00 34.32 2.43
2042 2213 4.020128 ACTCTCCTACTTTTGCGAGGAATT 60.020 41.667 0.00 0.00 38.90 2.17
2123 2294 6.258068 ACTTGTTTTCAGTACCTTCTCTTTCG 59.742 38.462 0.00 0.00 0.00 3.46
2321 2492 0.836400 AATACTCCATCCGCCCCGAT 60.836 55.000 0.00 0.00 0.00 4.18
2393 2580 6.317391 AGCAGCCAAATCTAAGACAAGTAATC 59.683 38.462 0.00 0.00 0.00 1.75
2498 2685 4.946772 TCATGTCAGTTCTGGAACAAACAA 59.053 37.500 17.89 6.72 43.47 2.83
2510 2697 8.408043 TCTGGAACAAACAACATTAATCTGAT 57.592 30.769 1.85 0.00 38.70 2.90
2544 2731 5.237344 GTCATGCAGATAATACAACTCCCAC 59.763 44.000 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.293955 CCATGTTGATAGGTTTTGACGAACTT 60.294 38.462 0.00 0.00 0.00 2.66
1 2 5.181245 CCATGTTGATAGGTTTTGACGAACT 59.819 40.000 0.00 0.00 0.00 3.01
2 3 5.180492 TCCATGTTGATAGGTTTTGACGAAC 59.820 40.000 0.00 0.00 0.00 3.95
3 4 5.309638 TCCATGTTGATAGGTTTTGACGAA 58.690 37.500 0.00 0.00 0.00 3.85
4 5 4.900684 TCCATGTTGATAGGTTTTGACGA 58.099 39.130 0.00 0.00 0.00 4.20
5 6 5.621197 TTCCATGTTGATAGGTTTTGACG 57.379 39.130 0.00 0.00 0.00 4.35
6 7 7.396540 AGATTCCATGTTGATAGGTTTTGAC 57.603 36.000 0.00 0.00 0.00 3.18
7 8 8.328758 AGTAGATTCCATGTTGATAGGTTTTGA 58.671 33.333 0.00 0.00 0.00 2.69
8 9 8.511604 AGTAGATTCCATGTTGATAGGTTTTG 57.488 34.615 0.00 0.00 0.00 2.44
9 10 9.533831 AAAGTAGATTCCATGTTGATAGGTTTT 57.466 29.630 0.00 0.00 0.00 2.43
10 11 9.533831 AAAAGTAGATTCCATGTTGATAGGTTT 57.466 29.630 0.00 0.00 0.00 3.27
11 12 8.960591 CAAAAGTAGATTCCATGTTGATAGGTT 58.039 33.333 0.00 0.00 0.00 3.50
12 13 8.328758 TCAAAAGTAGATTCCATGTTGATAGGT 58.671 33.333 0.00 0.00 0.00 3.08
13 14 8.737168 TCAAAAGTAGATTCCATGTTGATAGG 57.263 34.615 0.00 0.00 0.00 2.57
15 16 9.958180 TCTTCAAAAGTAGATTCCATGTTGATA 57.042 29.630 0.00 0.00 0.00 2.15
16 17 8.734386 GTCTTCAAAAGTAGATTCCATGTTGAT 58.266 33.333 0.00 0.00 0.00 2.57
17 18 7.174946 GGTCTTCAAAAGTAGATTCCATGTTGA 59.825 37.037 0.00 0.00 0.00 3.18
18 19 7.175641 AGGTCTTCAAAAGTAGATTCCATGTTG 59.824 37.037 0.00 0.00 0.00 3.33
19 20 7.234355 AGGTCTTCAAAAGTAGATTCCATGTT 58.766 34.615 0.00 0.00 0.00 2.71
20 21 6.784031 AGGTCTTCAAAAGTAGATTCCATGT 58.216 36.000 0.00 0.00 0.00 3.21
21 22 6.036517 CGAGGTCTTCAAAAGTAGATTCCATG 59.963 42.308 0.00 0.00 0.00 3.66
22 23 6.070767 TCGAGGTCTTCAAAAGTAGATTCCAT 60.071 38.462 0.00 0.00 0.00 3.41
23 24 5.245301 TCGAGGTCTTCAAAAGTAGATTCCA 59.755 40.000 0.00 0.00 0.00 3.53
24 25 5.577554 GTCGAGGTCTTCAAAAGTAGATTCC 59.422 44.000 0.00 0.00 0.00 3.01
25 26 6.089685 GTGTCGAGGTCTTCAAAAGTAGATTC 59.910 42.308 0.00 0.00 0.00 2.52
26 27 5.927115 GTGTCGAGGTCTTCAAAAGTAGATT 59.073 40.000 0.00 0.00 0.00 2.40
27 28 5.471257 GTGTCGAGGTCTTCAAAAGTAGAT 58.529 41.667 0.00 0.00 0.00 1.98
28 29 4.556104 CGTGTCGAGGTCTTCAAAAGTAGA 60.556 45.833 0.00 0.00 0.00 2.59
29 30 3.669122 CGTGTCGAGGTCTTCAAAAGTAG 59.331 47.826 0.00 0.00 0.00 2.57
30 31 3.316029 TCGTGTCGAGGTCTTCAAAAGTA 59.684 43.478 0.00 0.00 0.00 2.24
31 32 2.100252 TCGTGTCGAGGTCTTCAAAAGT 59.900 45.455 0.00 0.00 0.00 2.66
32 33 2.739292 TCGTGTCGAGGTCTTCAAAAG 58.261 47.619 0.00 0.00 0.00 2.27
33 34 2.875087 TCGTGTCGAGGTCTTCAAAA 57.125 45.000 0.00 0.00 0.00 2.44
44 45 1.667756 CCGTTGAATTCCTCGTGTCGA 60.668 52.381 14.84 0.00 0.00 4.20
45 46 0.713883 CCGTTGAATTCCTCGTGTCG 59.286 55.000 14.84 5.36 0.00 4.35
46 47 0.442699 GCCGTTGAATTCCTCGTGTC 59.557 55.000 14.84 4.34 0.00 3.67
47 48 1.289109 CGCCGTTGAATTCCTCGTGT 61.289 55.000 14.84 0.00 0.00 4.49
48 49 1.011968 TCGCCGTTGAATTCCTCGTG 61.012 55.000 14.84 9.22 0.00 4.35
49 50 0.320073 TTCGCCGTTGAATTCCTCGT 60.320 50.000 14.84 0.00 0.00 4.18
50 51 0.793861 TTTCGCCGTTGAATTCCTCG 59.206 50.000 2.27 7.60 0.00 4.63
51 52 1.465856 GCTTTCGCCGTTGAATTCCTC 60.466 52.381 2.27 0.00 0.00 3.71
52 53 0.521735 GCTTTCGCCGTTGAATTCCT 59.478 50.000 2.27 0.00 0.00 3.36
53 54 0.793104 CGCTTTCGCCGTTGAATTCC 60.793 55.000 2.27 0.00 0.00 3.01
54 55 0.793104 CCGCTTTCGCCGTTGAATTC 60.793 55.000 0.00 0.00 0.00 2.17
55 56 1.209127 CCGCTTTCGCCGTTGAATT 59.791 52.632 0.00 0.00 0.00 2.17
56 57 1.512156 AACCGCTTTCGCCGTTGAAT 61.512 50.000 0.00 0.00 36.48 2.57
57 58 2.108344 GAACCGCTTTCGCCGTTGAA 62.108 55.000 0.00 0.00 37.64 2.69
58 59 2.589442 AACCGCTTTCGCCGTTGA 60.589 55.556 0.00 0.00 36.48 3.18
59 60 2.127383 GAACCGCTTTCGCCGTTG 60.127 61.111 0.00 0.00 37.64 4.10
66 67 3.117346 CGTTCAAATTTCGAACCGCTTTC 59.883 43.478 19.09 0.00 39.69 2.62
67 68 3.040099 CGTTCAAATTTCGAACCGCTTT 58.960 40.909 19.09 0.00 39.69 3.51
68 69 2.646250 CGTTCAAATTTCGAACCGCTT 58.354 42.857 19.09 0.00 39.69 4.68
69 70 1.662026 GCGTTCAAATTTCGAACCGCT 60.662 47.619 22.97 0.00 39.69 5.52
70 71 0.700764 GCGTTCAAATTTCGAACCGC 59.299 50.000 19.09 19.54 39.69 5.68
71 72 0.965014 CGCGTTCAAATTTCGAACCG 59.035 50.000 19.09 18.46 39.69 4.44
72 73 0.700764 GCGCGTTCAAATTTCGAACC 59.299 50.000 8.43 13.93 39.69 3.62
73 74 0.354319 CGCGCGTTCAAATTTCGAAC 59.646 50.000 24.19 16.84 39.50 3.95
74 75 0.723129 CCGCGCGTTCAAATTTCGAA 60.723 50.000 29.95 0.00 0.00 3.71
75 76 1.154562 CCGCGCGTTCAAATTTCGA 60.155 52.632 29.95 0.00 0.00 3.71
76 77 0.994737 AACCGCGCGTTCAAATTTCG 60.995 50.000 29.95 11.50 0.00 3.46
77 78 1.125270 AAACCGCGCGTTCAAATTTC 58.875 45.000 29.95 0.00 31.78 2.17
78 79 2.402640 TAAACCGCGCGTTCAAATTT 57.597 40.000 29.95 18.92 31.78 1.82
79 80 2.031857 TCTTAAACCGCGCGTTCAAATT 60.032 40.909 29.95 15.28 31.78 1.82
80 81 1.532007 TCTTAAACCGCGCGTTCAAAT 59.468 42.857 29.95 10.79 31.78 2.32
81 82 0.935898 TCTTAAACCGCGCGTTCAAA 59.064 45.000 29.95 15.92 31.78 2.69
82 83 0.509499 CTCTTAAACCGCGCGTTCAA 59.491 50.000 29.95 13.99 31.78 2.69
83 84 0.318869 TCTCTTAAACCGCGCGTTCA 60.319 50.000 29.95 7.97 31.78 3.18
84 85 0.997196 ATCTCTTAAACCGCGCGTTC 59.003 50.000 29.95 0.00 31.78 3.95
85 86 2.282701 TATCTCTTAAACCGCGCGTT 57.717 45.000 29.95 19.73 35.70 4.84
86 87 2.282701 TTATCTCTTAAACCGCGCGT 57.717 45.000 29.95 13.36 0.00 6.01
87 88 3.339695 GTTTTATCTCTTAAACCGCGCG 58.660 45.455 25.67 25.67 29.47 6.86
88 89 3.181527 ACGTTTTATCTCTTAAACCGCGC 60.182 43.478 0.00 0.00 38.74 6.86
89 90 4.572950 ACGTTTTATCTCTTAAACCGCG 57.427 40.909 0.00 0.00 38.74 6.46
90 91 6.852345 TCAAAACGTTTTATCTCTTAAACCGC 59.148 34.615 24.79 0.00 38.74 5.68
91 92 8.770850 TTCAAAACGTTTTATCTCTTAAACCG 57.229 30.769 24.79 8.91 40.37 4.44
106 107 7.095691 TTCGTAGATCCGTTTATTCAAAACGTT 60.096 33.333 18.32 0.00 43.53 3.99
107 108 6.365789 TTCGTAGATCCGTTTATTCAAAACGT 59.634 34.615 18.32 4.51 43.53 3.99
108 109 6.754206 TTCGTAGATCCGTTTATTCAAAACG 58.246 36.000 14.30 14.30 44.14 3.60
109 110 8.938047 TTTTCGTAGATCCGTTTATTCAAAAC 57.062 30.769 0.00 0.00 35.04 2.43
139 140 5.350640 CCACTTATCGTAACCTGGAAGTTTC 59.649 44.000 0.00 0.00 0.00 2.78
140 141 5.243207 CCACTTATCGTAACCTGGAAGTTT 58.757 41.667 0.00 0.00 0.00 2.66
141 142 4.828829 CCACTTATCGTAACCTGGAAGTT 58.171 43.478 0.00 0.00 0.00 2.66
142 143 3.369157 GCCACTTATCGTAACCTGGAAGT 60.369 47.826 0.00 0.00 0.00 3.01
143 144 3.195661 GCCACTTATCGTAACCTGGAAG 58.804 50.000 0.00 0.00 0.00 3.46
144 145 2.417651 CGCCACTTATCGTAACCTGGAA 60.418 50.000 0.00 0.00 0.00 3.53
145 146 1.135527 CGCCACTTATCGTAACCTGGA 59.864 52.381 0.00 0.00 0.00 3.86
146 147 1.567504 CGCCACTTATCGTAACCTGG 58.432 55.000 0.00 0.00 0.00 4.45
147 148 1.135527 TCCGCCACTTATCGTAACCTG 59.864 52.381 0.00 0.00 0.00 4.00
148 149 1.135721 GTCCGCCACTTATCGTAACCT 59.864 52.381 0.00 0.00 0.00 3.50
149 150 1.135024 TGTCCGCCACTTATCGTAACC 60.135 52.381 0.00 0.00 0.00 2.85
150 151 2.282701 TGTCCGCCACTTATCGTAAC 57.717 50.000 0.00 0.00 0.00 2.50
151 152 2.816689 CATGTCCGCCACTTATCGTAA 58.183 47.619 0.00 0.00 0.00 3.18
152 153 1.537348 GCATGTCCGCCACTTATCGTA 60.537 52.381 0.00 0.00 0.00 3.43
153 154 0.810031 GCATGTCCGCCACTTATCGT 60.810 55.000 0.00 0.00 0.00 3.73
154 155 0.809636 TGCATGTCCGCCACTTATCG 60.810 55.000 0.00 0.00 0.00 2.92
155 156 0.940126 CTGCATGTCCGCCACTTATC 59.060 55.000 0.00 0.00 0.00 1.75
156 157 1.097547 GCTGCATGTCCGCCACTTAT 61.098 55.000 0.00 0.00 0.00 1.73
157 158 1.745115 GCTGCATGTCCGCCACTTA 60.745 57.895 0.00 0.00 0.00 2.24
158 159 3.058160 GCTGCATGTCCGCCACTT 61.058 61.111 0.00 0.00 0.00 3.16
178 179 2.639286 CAGGTTGCGACAAGTGGC 59.361 61.111 6.39 0.00 34.76 5.01
179 180 2.260869 CCCAGGTTGCGACAAGTGG 61.261 63.158 6.39 9.17 0.00 4.00
180 181 2.260869 CCCCAGGTTGCGACAAGTG 61.261 63.158 6.39 0.00 0.00 3.16
181 182 2.113139 CCCCAGGTTGCGACAAGT 59.887 61.111 6.39 0.00 0.00 3.16
182 183 1.672356 CTCCCCAGGTTGCGACAAG 60.672 63.158 6.39 0.00 0.00 3.16
183 184 2.429930 CTCCCCAGGTTGCGACAA 59.570 61.111 6.39 0.00 0.00 3.18
184 185 3.636231 CCTCCCCAGGTTGCGACA 61.636 66.667 6.39 0.00 34.60 4.35
192 193 0.034089 GTCAATCCAACCTCCCCAGG 60.034 60.000 0.00 0.00 46.87 4.45
193 194 0.034089 GGTCAATCCAACCTCCCCAG 60.034 60.000 0.00 0.00 33.78 4.45
194 195 0.477597 AGGTCAATCCAACCTCCCCA 60.478 55.000 0.00 0.00 43.85 4.96
195 196 0.704664 AAGGTCAATCCAACCTCCCC 59.295 55.000 0.00 0.00 46.54 4.81
196 197 2.171003 CAAAGGTCAATCCAACCTCCC 58.829 52.381 0.00 0.00 46.54 4.30
197 198 1.546029 GCAAAGGTCAATCCAACCTCC 59.454 52.381 0.00 0.00 46.54 4.30
198 199 2.238521 TGCAAAGGTCAATCCAACCTC 58.761 47.619 0.00 0.00 46.54 3.85
200 201 2.365293 AGTTGCAAAGGTCAATCCAACC 59.635 45.455 0.00 0.00 39.02 3.77
201 202 3.181476 ACAGTTGCAAAGGTCAATCCAAC 60.181 43.478 0.00 0.00 39.02 3.77
202 203 3.030291 ACAGTTGCAAAGGTCAATCCAA 58.970 40.909 0.00 0.00 39.02 3.53
203 204 2.665165 ACAGTTGCAAAGGTCAATCCA 58.335 42.857 0.00 0.00 39.02 3.41
204 205 4.072131 TCTACAGTTGCAAAGGTCAATCC 58.928 43.478 0.00 0.00 0.00 3.01
205 206 5.239525 ACTTCTACAGTTGCAAAGGTCAATC 59.760 40.000 0.00 0.00 27.32 2.67
206 207 5.009010 CACTTCTACAGTTGCAAAGGTCAAT 59.991 40.000 0.00 0.00 30.92 2.57
207 208 4.335315 CACTTCTACAGTTGCAAAGGTCAA 59.665 41.667 0.00 0.00 30.92 3.18
208 209 3.876914 CACTTCTACAGTTGCAAAGGTCA 59.123 43.478 0.00 0.00 30.92 4.02
209 210 3.304057 GCACTTCTACAGTTGCAAAGGTC 60.304 47.826 0.00 0.00 30.92 3.85
210 211 2.618709 GCACTTCTACAGTTGCAAAGGT 59.381 45.455 0.00 4.98 30.92 3.50
211 212 2.618241 TGCACTTCTACAGTTGCAAAGG 59.382 45.455 0.00 0.00 36.91 3.11
212 213 3.969117 TGCACTTCTACAGTTGCAAAG 57.031 42.857 0.00 0.00 36.91 2.77
213 214 3.550639 GCATGCACTTCTACAGTTGCAAA 60.551 43.478 14.21 0.00 40.58 3.68
214 215 2.030893 GCATGCACTTCTACAGTTGCAA 60.031 45.455 14.21 0.00 40.58 4.08
215 216 1.536766 GCATGCACTTCTACAGTTGCA 59.463 47.619 14.21 0.00 41.09 4.08
216 217 1.808945 AGCATGCACTTCTACAGTTGC 59.191 47.619 21.98 0.00 37.12 4.17
217 218 3.332919 AGAGCATGCACTTCTACAGTTG 58.667 45.455 21.98 0.00 30.92 3.16
218 219 3.692257 AGAGCATGCACTTCTACAGTT 57.308 42.857 21.98 0.00 30.92 3.16
219 220 3.430098 GCTAGAGCATGCACTTCTACAGT 60.430 47.826 22.83 0.00 41.59 3.55
220 221 3.122297 GCTAGAGCATGCACTTCTACAG 58.878 50.000 22.83 14.19 41.59 2.74
221 222 2.159043 GGCTAGAGCATGCACTTCTACA 60.159 50.000 22.83 3.70 44.36 2.74
222 223 2.159043 TGGCTAGAGCATGCACTTCTAC 60.159 50.000 22.83 12.67 44.36 2.59
223 224 2.110578 TGGCTAGAGCATGCACTTCTA 58.889 47.619 22.83 17.21 44.36 2.10
224 225 0.907486 TGGCTAGAGCATGCACTTCT 59.093 50.000 22.83 17.00 44.36 2.85
225 226 1.742761 TTGGCTAGAGCATGCACTTC 58.257 50.000 22.83 14.30 44.36 3.01
226 227 2.022195 CATTGGCTAGAGCATGCACTT 58.978 47.619 22.83 8.33 44.36 3.16
227 228 1.676746 CATTGGCTAGAGCATGCACT 58.323 50.000 21.45 21.45 44.36 4.40
228 229 0.030369 GCATTGGCTAGAGCATGCAC 59.970 55.000 21.98 14.59 44.74 4.57
229 230 2.411535 GCATTGGCTAGAGCATGCA 58.588 52.632 21.98 0.00 44.74 3.96
230 231 0.742505 TTGCATTGGCTAGAGCATGC 59.257 50.000 10.51 10.51 45.25 4.06
231 232 1.066605 GGTTGCATTGGCTAGAGCATG 59.933 52.381 3.54 0.90 44.36 4.06
232 233 1.341285 TGGTTGCATTGGCTAGAGCAT 60.341 47.619 3.54 0.00 44.36 3.79
233 234 0.038021 TGGTTGCATTGGCTAGAGCA 59.962 50.000 3.54 0.00 44.36 4.26
234 235 1.176527 TTGGTTGCATTGGCTAGAGC 58.823 50.000 0.00 0.00 41.91 4.09
235 236 3.507233 TCTTTTGGTTGCATTGGCTAGAG 59.493 43.478 0.00 0.00 41.91 2.43
236 237 3.255642 GTCTTTTGGTTGCATTGGCTAGA 59.744 43.478 0.00 0.00 41.91 2.43
237 238 3.578688 GTCTTTTGGTTGCATTGGCTAG 58.421 45.455 0.00 0.00 41.91 3.42
238 239 2.298729 GGTCTTTTGGTTGCATTGGCTA 59.701 45.455 0.00 0.00 41.91 3.93
239 240 1.070601 GGTCTTTTGGTTGCATTGGCT 59.929 47.619 0.00 0.00 41.91 4.75
240 241 1.511850 GGTCTTTTGGTTGCATTGGC 58.488 50.000 0.00 0.00 41.68 4.52
241 242 1.339610 TCGGTCTTTTGGTTGCATTGG 59.660 47.619 0.00 0.00 0.00 3.16
242 243 2.791383 TCGGTCTTTTGGTTGCATTG 57.209 45.000 0.00 0.00 0.00 2.82
243 244 3.057315 CAGATCGGTCTTTTGGTTGCATT 60.057 43.478 0.00 0.00 30.42 3.56
244 245 2.489329 CAGATCGGTCTTTTGGTTGCAT 59.511 45.455 0.00 0.00 30.42 3.96
245 246 1.879380 CAGATCGGTCTTTTGGTTGCA 59.121 47.619 0.00 0.00 30.42 4.08
246 247 1.200020 CCAGATCGGTCTTTTGGTTGC 59.800 52.381 0.00 0.00 30.42 4.17
258 259 0.757188 AGCCTCTACCACCAGATCGG 60.757 60.000 2.55 2.55 42.50 4.18
259 260 1.883275 CTAGCCTCTACCACCAGATCG 59.117 57.143 0.00 0.00 0.00 3.69
260 261 2.243810 CCTAGCCTCTACCACCAGATC 58.756 57.143 0.00 0.00 0.00 2.75
261 262 1.759562 GCCTAGCCTCTACCACCAGAT 60.760 57.143 0.00 0.00 0.00 2.90
262 263 0.397254 GCCTAGCCTCTACCACCAGA 60.397 60.000 0.00 0.00 0.00 3.86
263 264 0.687757 TGCCTAGCCTCTACCACCAG 60.688 60.000 0.00 0.00 0.00 4.00
264 265 0.687757 CTGCCTAGCCTCTACCACCA 60.688 60.000 0.00 0.00 0.00 4.17
265 266 2.034048 GCTGCCTAGCCTCTACCACC 62.034 65.000 0.00 0.00 44.33 4.61
266 267 1.443828 GCTGCCTAGCCTCTACCAC 59.556 63.158 0.00 0.00 44.33 4.16
267 268 3.956377 GCTGCCTAGCCTCTACCA 58.044 61.111 0.00 0.00 44.33 3.25
276 277 3.977427 TGACGTATAATGTGCTGCCTAG 58.023 45.455 0.00 0.00 0.00 3.02
277 278 4.116961 GTTGACGTATAATGTGCTGCCTA 58.883 43.478 0.00 0.00 0.00 3.93
278 279 2.936498 GTTGACGTATAATGTGCTGCCT 59.064 45.455 0.00 0.00 0.00 4.75
279 280 2.675844 TGTTGACGTATAATGTGCTGCC 59.324 45.455 0.00 0.00 0.00 4.85
280 281 3.370978 AGTGTTGACGTATAATGTGCTGC 59.629 43.478 0.00 0.00 0.00 5.25
281 282 4.032900 GGAGTGTTGACGTATAATGTGCTG 59.967 45.833 0.00 0.00 0.00 4.41
282 283 4.181578 GGAGTGTTGACGTATAATGTGCT 58.818 43.478 0.00 0.00 0.00 4.40
283 284 3.308866 GGGAGTGTTGACGTATAATGTGC 59.691 47.826 0.00 0.00 0.00 4.57
284 285 3.869246 GGGGAGTGTTGACGTATAATGTG 59.131 47.826 0.00 0.00 0.00 3.21
285 286 3.118519 GGGGGAGTGTTGACGTATAATGT 60.119 47.826 0.00 0.00 0.00 2.71
286 287 3.134081 AGGGGGAGTGTTGACGTATAATG 59.866 47.826 0.00 0.00 0.00 1.90
287 288 3.381335 AGGGGGAGTGTTGACGTATAAT 58.619 45.455 0.00 0.00 0.00 1.28
288 289 2.762327 GAGGGGGAGTGTTGACGTATAA 59.238 50.000 0.00 0.00 0.00 0.98
289 290 2.291735 TGAGGGGGAGTGTTGACGTATA 60.292 50.000 0.00 0.00 0.00 1.47
290 291 1.192428 GAGGGGGAGTGTTGACGTAT 58.808 55.000 0.00 0.00 0.00 3.06
291 292 0.178955 TGAGGGGGAGTGTTGACGTA 60.179 55.000 0.00 0.00 0.00 3.57
292 293 1.458777 TGAGGGGGAGTGTTGACGT 60.459 57.895 0.00 0.00 0.00 4.34
293 294 1.004918 GTGAGGGGGAGTGTTGACG 60.005 63.158 0.00 0.00 0.00 4.35
294 295 1.004918 CGTGAGGGGGAGTGTTGAC 60.005 63.158 0.00 0.00 0.00 3.18
295 296 1.458777 ACGTGAGGGGGAGTGTTGA 60.459 57.895 0.00 0.00 0.00 3.18
296 297 1.301716 CACGTGAGGGGGAGTGTTG 60.302 63.158 10.90 0.00 0.00 3.33
297 298 1.764854 ACACGTGAGGGGGAGTGTT 60.765 57.895 25.01 0.00 44.32 3.32
298 299 2.122989 ACACGTGAGGGGGAGTGT 60.123 61.111 25.01 0.00 42.26 3.55
299 300 2.343758 CACACGTGAGGGGGAGTG 59.656 66.667 25.01 3.00 44.61 3.51
300 301 2.923035 CCACACGTGAGGGGGAGT 60.923 66.667 25.01 0.00 44.61 3.85
301 302 4.394712 GCCACACGTGAGGGGGAG 62.395 72.222 29.55 7.85 44.61 4.30
302 303 4.954118 AGCCACACGTGAGGGGGA 62.954 66.667 29.55 0.00 44.61 4.81
303 304 4.394712 GAGCCACACGTGAGGGGG 62.395 72.222 29.55 20.83 40.46 5.40
304 305 4.394712 GGAGCCACACGTGAGGGG 62.395 72.222 29.55 23.01 40.46 4.79
305 306 4.394712 GGGAGCCACACGTGAGGG 62.395 72.222 29.55 25.23 43.28 4.30
306 307 3.302347 GAGGGAGCCACACGTGAGG 62.302 68.421 25.64 25.64 0.00 3.86
307 308 2.262915 GAGGGAGCCACACGTGAG 59.737 66.667 25.01 15.20 0.00 3.51
308 309 2.523168 TGAGGGAGCCACACGTGA 60.523 61.111 25.01 0.00 0.00 4.35
309 310 2.047844 CTGAGGGAGCCACACGTG 60.048 66.667 15.48 15.48 0.00 4.49
310 311 3.314331 CCTGAGGGAGCCACACGT 61.314 66.667 0.00 0.00 33.58 4.49
311 312 4.767255 GCCTGAGGGAGCCACACG 62.767 72.222 0.00 0.00 33.58 4.49
317 318 1.153349 CGTTTAGGCCTGAGGGAGC 60.153 63.158 17.99 0.00 33.58 4.70
318 319 0.108138 CACGTTTAGGCCTGAGGGAG 60.108 60.000 17.99 4.31 33.58 4.30
319 320 1.550130 CCACGTTTAGGCCTGAGGGA 61.550 60.000 17.99 0.00 33.58 4.20
320 321 1.078426 CCACGTTTAGGCCTGAGGG 60.078 63.158 17.99 5.37 0.00 4.30
321 322 0.391263 GTCCACGTTTAGGCCTGAGG 60.391 60.000 17.99 12.15 0.00 3.86
322 323 0.391263 GGTCCACGTTTAGGCCTGAG 60.391 60.000 17.99 6.27 0.00 3.35
323 324 1.675219 GGTCCACGTTTAGGCCTGA 59.325 57.895 17.99 3.42 0.00 3.86
324 325 1.740296 CGGTCCACGTTTAGGCCTG 60.740 63.158 17.99 0.00 37.93 4.85
325 326 1.474332 TTCGGTCCACGTTTAGGCCT 61.474 55.000 11.78 11.78 44.69 5.19
326 327 0.603439 TTTCGGTCCACGTTTAGGCC 60.603 55.000 0.00 0.00 44.69 5.19
327 328 0.794473 CTTTCGGTCCACGTTTAGGC 59.206 55.000 0.00 0.00 44.69 3.93
328 329 1.796459 CACTTTCGGTCCACGTTTAGG 59.204 52.381 0.00 0.00 44.69 2.69
329 330 1.796459 CCACTTTCGGTCCACGTTTAG 59.204 52.381 0.00 0.00 44.69 1.85
330 331 1.540797 CCCACTTTCGGTCCACGTTTA 60.541 52.381 0.00 0.00 44.69 2.01
331 332 0.816421 CCCACTTTCGGTCCACGTTT 60.816 55.000 0.00 0.00 44.69 3.60
332 333 1.227734 CCCACTTTCGGTCCACGTT 60.228 57.895 0.00 0.00 44.69 3.99
333 334 2.424302 CCCACTTTCGGTCCACGT 59.576 61.111 0.00 0.00 44.69 4.49
334 335 3.047877 GCCCACTTTCGGTCCACG 61.048 66.667 0.00 0.00 46.11 4.94
335 336 1.966451 CAGCCCACTTTCGGTCCAC 60.966 63.158 0.00 0.00 0.00 4.02
336 337 2.429930 CAGCCCACTTTCGGTCCA 59.570 61.111 0.00 0.00 0.00 4.02
337 338 3.056328 GCAGCCCACTTTCGGTCC 61.056 66.667 0.00 0.00 0.00 4.46
338 339 1.244019 ATTGCAGCCCACTTTCGGTC 61.244 55.000 0.00 0.00 0.00 4.79
339 340 0.827507 AATTGCAGCCCACTTTCGGT 60.828 50.000 0.00 0.00 0.00 4.69
340 341 0.318120 AAATTGCAGCCCACTTTCGG 59.682 50.000 0.00 0.00 0.00 4.30
341 342 2.153366 AAAATTGCAGCCCACTTTCG 57.847 45.000 0.00 0.00 0.00 3.46
342 343 5.930405 CAATTAAAATTGCAGCCCACTTTC 58.070 37.500 2.68 0.00 39.29 2.62
343 344 5.945466 CAATTAAAATTGCAGCCCACTTT 57.055 34.783 2.68 0.00 39.29 2.66
354 355 0.649993 GGCCGGCGCAATTAAAATTG 59.350 50.000 22.54 10.43 46.55 2.32
355 356 0.804156 CGGCCGGCGCAATTAAAATT 60.804 50.000 22.54 0.00 36.38 1.82
356 357 1.226831 CGGCCGGCGCAATTAAAAT 60.227 52.632 22.54 0.00 36.38 1.82
357 358 2.179517 CGGCCGGCGCAATTAAAA 59.820 55.556 22.54 0.00 36.38 1.52
358 359 3.816524 CCGGCCGGCGCAATTAAA 61.817 61.111 34.96 0.00 36.38 1.52
368 369 3.952628 GAGTTCAAGACCCGGCCGG 62.953 68.421 37.99 37.99 37.81 6.13
369 370 2.434359 GAGTTCAAGACCCGGCCG 60.434 66.667 21.04 21.04 0.00 6.13
370 371 1.072505 TTGAGTTCAAGACCCGGCC 59.927 57.895 0.00 0.00 0.00 6.13
371 372 4.792087 TTGAGTTCAAGACCCGGC 57.208 55.556 0.00 0.00 0.00 6.13
385 386 7.201947 CATGGTATCATAGTCAAGAGGTCTTGA 60.202 40.741 16.79 16.79 44.14 3.02
386 387 6.927936 CATGGTATCATAGTCAAGAGGTCTTG 59.072 42.308 12.72 12.72 41.92 3.02
387 388 6.613271 ACATGGTATCATAGTCAAGAGGTCTT 59.387 38.462 0.00 0.00 32.16 3.01
388 389 6.139671 ACATGGTATCATAGTCAAGAGGTCT 58.860 40.000 0.00 0.00 31.33 3.85
389 390 6.412362 ACATGGTATCATAGTCAAGAGGTC 57.588 41.667 0.00 0.00 31.33 3.85
390 391 7.298374 TCTACATGGTATCATAGTCAAGAGGT 58.702 38.462 0.00 0.00 31.33 3.85
391 392 7.767250 TCTACATGGTATCATAGTCAAGAGG 57.233 40.000 0.00 0.00 31.33 3.69
392 393 8.855110 ACTTCTACATGGTATCATAGTCAAGAG 58.145 37.037 0.00 1.27 31.33 2.85
393 394 8.633561 CACTTCTACATGGTATCATAGTCAAGA 58.366 37.037 0.00 3.83 31.33 3.02
394 395 7.383572 GCACTTCTACATGGTATCATAGTCAAG 59.616 40.741 0.00 0.00 31.33 3.02
395 396 7.147742 TGCACTTCTACATGGTATCATAGTCAA 60.148 37.037 0.00 0.00 31.33 3.18
396 397 6.323739 TGCACTTCTACATGGTATCATAGTCA 59.676 38.462 0.00 0.00 31.33 3.41
397 398 6.749139 TGCACTTCTACATGGTATCATAGTC 58.251 40.000 0.00 0.00 31.33 2.59
398 399 6.731292 TGCACTTCTACATGGTATCATAGT 57.269 37.500 0.00 0.00 31.33 2.12
399 400 7.157347 ACATGCACTTCTACATGGTATCATAG 58.843 38.462 7.78 0.00 46.35 2.23
400 401 7.066307 ACATGCACTTCTACATGGTATCATA 57.934 36.000 7.78 0.00 46.35 2.15
401 402 5.933617 ACATGCACTTCTACATGGTATCAT 58.066 37.500 7.78 0.00 46.35 2.45
402 403 5.357742 ACATGCACTTCTACATGGTATCA 57.642 39.130 7.78 0.00 46.35 2.15
403 404 6.051717 AGAACATGCACTTCTACATGGTATC 58.948 40.000 6.68 3.63 44.07 2.24
404 405 5.994250 AGAACATGCACTTCTACATGGTAT 58.006 37.500 6.68 0.00 44.07 2.73
405 406 5.420725 AGAACATGCACTTCTACATGGTA 57.579 39.130 6.68 0.00 44.07 3.25
406 407 4.292186 AGAACATGCACTTCTACATGGT 57.708 40.909 6.68 0.51 46.63 3.55
407 408 4.272018 GCTAGAACATGCACTTCTACATGG 59.728 45.833 10.39 4.49 46.35 3.66
409 410 4.080919 TGGCTAGAACATGCACTTCTACAT 60.081 41.667 10.39 0.00 0.00 2.29
410 411 3.260632 TGGCTAGAACATGCACTTCTACA 59.739 43.478 10.39 6.81 0.00 2.74
411 412 3.861840 TGGCTAGAACATGCACTTCTAC 58.138 45.455 10.39 8.35 0.00 2.59
412 413 4.551702 TTGGCTAGAACATGCACTTCTA 57.448 40.909 12.84 12.84 0.00 2.10
413 414 3.423539 TTGGCTAGAACATGCACTTCT 57.576 42.857 12.06 12.06 0.00 2.85
414 415 3.733077 GCATTGGCTAGAACATGCACTTC 60.733 47.826 12.95 0.00 36.96 3.01
415 416 2.165030 GCATTGGCTAGAACATGCACTT 59.835 45.455 12.95 0.00 36.96 3.16
416 417 1.747355 GCATTGGCTAGAACATGCACT 59.253 47.619 12.95 0.00 36.96 4.40
417 418 1.473677 TGCATTGGCTAGAACATGCAC 59.526 47.619 15.41 0.00 39.69 4.57
418 419 1.836802 TGCATTGGCTAGAACATGCA 58.163 45.000 15.41 15.41 41.91 3.96
419 420 2.533266 GTTGCATTGGCTAGAACATGC 58.467 47.619 11.57 11.57 41.91 4.06
420 421 2.492881 TGGTTGCATTGGCTAGAACATG 59.507 45.455 0.00 0.00 41.91 3.21
421 422 2.806434 TGGTTGCATTGGCTAGAACAT 58.194 42.857 0.00 0.00 41.91 2.71
422 423 2.284754 TGGTTGCATTGGCTAGAACA 57.715 45.000 0.00 0.00 41.91 3.18
423 424 3.255642 TCTTTGGTTGCATTGGCTAGAAC 59.744 43.478 0.00 0.00 41.91 3.01
424 425 3.255642 GTCTTTGGTTGCATTGGCTAGAA 59.744 43.478 0.00 0.00 41.91 2.10
425 426 2.819608 GTCTTTGGTTGCATTGGCTAGA 59.180 45.455 0.00 0.00 41.91 2.43
426 427 2.821969 AGTCTTTGGTTGCATTGGCTAG 59.178 45.455 0.00 0.00 41.91 3.42
427 428 2.557924 CAGTCTTTGGTTGCATTGGCTA 59.442 45.455 0.00 0.00 41.91 3.93
428 429 1.342174 CAGTCTTTGGTTGCATTGGCT 59.658 47.619 0.00 0.00 41.91 4.75
429 430 1.340889 TCAGTCTTTGGTTGCATTGGC 59.659 47.619 0.00 0.00 41.68 4.52
430 431 3.508793 AGATCAGTCTTTGGTTGCATTGG 59.491 43.478 0.00 0.00 0.00 3.16
431 432 4.482386 CAGATCAGTCTTTGGTTGCATTG 58.518 43.478 0.00 0.00 30.42 2.82
432 433 3.508793 CCAGATCAGTCTTTGGTTGCATT 59.491 43.478 0.00 0.00 30.42 3.56
433 434 3.087031 CCAGATCAGTCTTTGGTTGCAT 58.913 45.455 0.00 0.00 30.42 3.96
434 435 2.158623 ACCAGATCAGTCTTTGGTTGCA 60.159 45.455 0.00 0.00 28.99 4.08
435 436 2.227388 CACCAGATCAGTCTTTGGTTGC 59.773 50.000 0.00 0.00 30.51 4.17
436 437 3.743521 TCACCAGATCAGTCTTTGGTTG 58.256 45.455 0.00 0.00 30.51 3.77
437 438 4.647564 ATCACCAGATCAGTCTTTGGTT 57.352 40.909 0.00 0.00 30.51 3.67
438 439 5.762179 TTATCACCAGATCAGTCTTTGGT 57.238 39.130 0.00 0.00 35.67 3.67
439 440 5.587844 CCTTTATCACCAGATCAGTCTTTGG 59.412 44.000 0.00 0.00 35.67 3.28
440 441 5.065731 GCCTTTATCACCAGATCAGTCTTTG 59.934 44.000 0.00 0.00 35.67 2.77
441 442 5.045286 AGCCTTTATCACCAGATCAGTCTTT 60.045 40.000 0.00 0.00 35.67 2.52
442 443 4.472833 AGCCTTTATCACCAGATCAGTCTT 59.527 41.667 0.00 0.00 35.67 3.01
443 444 4.036518 AGCCTTTATCACCAGATCAGTCT 58.963 43.478 0.00 0.00 35.67 3.24
444 445 4.414337 AGCCTTTATCACCAGATCAGTC 57.586 45.455 0.00 0.00 35.67 3.51
445 446 4.346418 CCTAGCCTTTATCACCAGATCAGT 59.654 45.833 0.00 0.00 35.67 3.41
446 447 4.802248 GCCTAGCCTTTATCACCAGATCAG 60.802 50.000 0.00 0.00 35.67 2.90
447 448 3.071602 GCCTAGCCTTTATCACCAGATCA 59.928 47.826 0.00 0.00 35.67 2.92
448 449 3.071602 TGCCTAGCCTTTATCACCAGATC 59.928 47.826 0.00 0.00 35.67 2.75
449 450 3.048600 TGCCTAGCCTTTATCACCAGAT 58.951 45.455 0.00 0.00 38.29 2.90
450 451 2.435805 CTGCCTAGCCTTTATCACCAGA 59.564 50.000 0.00 0.00 0.00 3.86
451 452 2.843701 CTGCCTAGCCTTTATCACCAG 58.156 52.381 0.00 0.00 0.00 4.00
452 453 1.134098 GCTGCCTAGCCTTTATCACCA 60.134 52.381 0.00 0.00 44.33 4.17
453 454 1.598882 GCTGCCTAGCCTTTATCACC 58.401 55.000 0.00 0.00 44.33 4.02
464 465 3.977427 TGACGTATAATGTGCTGCCTAG 58.023 45.455 0.00 0.00 0.00 3.02
465 466 4.116961 GTTGACGTATAATGTGCTGCCTA 58.883 43.478 0.00 0.00 0.00 3.93
466 467 2.936498 GTTGACGTATAATGTGCTGCCT 59.064 45.455 0.00 0.00 0.00 4.75
467 468 2.675844 TGTTGACGTATAATGTGCTGCC 59.324 45.455 0.00 0.00 0.00 4.85
468 469 3.785505 GCTGTTGACGTATAATGTGCTGC 60.786 47.826 0.00 0.00 0.00 5.25
469 470 3.370672 TGCTGTTGACGTATAATGTGCTG 59.629 43.478 0.00 0.00 0.00 4.41
470 471 3.595173 TGCTGTTGACGTATAATGTGCT 58.405 40.909 0.00 0.00 0.00 4.40
471 472 4.088648 GTTGCTGTTGACGTATAATGTGC 58.911 43.478 0.00 0.00 0.00 4.57
472 473 4.090786 TCGTTGCTGTTGACGTATAATGTG 59.909 41.667 0.00 0.00 40.03 3.21
473 474 4.239304 TCGTTGCTGTTGACGTATAATGT 58.761 39.130 0.00 0.00 40.03 2.71
474 475 4.833469 TCGTTGCTGTTGACGTATAATG 57.167 40.909 0.00 0.00 40.03 1.90
475 476 6.755141 AGTATTCGTTGCTGTTGACGTATAAT 59.245 34.615 0.00 0.00 40.03 1.28
476 477 6.094719 AGTATTCGTTGCTGTTGACGTATAA 58.905 36.000 0.00 0.00 40.03 0.98
477 478 5.643664 AGTATTCGTTGCTGTTGACGTATA 58.356 37.500 0.00 0.00 40.03 1.47
478 479 4.491676 AGTATTCGTTGCTGTTGACGTAT 58.508 39.130 0.00 0.00 40.03 3.06
479 480 3.904571 AGTATTCGTTGCTGTTGACGTA 58.095 40.909 0.00 0.00 40.03 3.57
480 481 2.750948 AGTATTCGTTGCTGTTGACGT 58.249 42.857 0.00 0.00 40.03 4.34
481 482 3.722123 GAAGTATTCGTTGCTGTTGACG 58.278 45.455 0.00 0.00 40.43 4.35
495 496 6.585695 TTCGTCCACTAGTTGAGAAGTATT 57.414 37.500 0.00 0.00 0.00 1.89
496 497 6.458478 CGATTCGTCCACTAGTTGAGAAGTAT 60.458 42.308 0.00 0.00 0.00 2.12
497 498 5.163784 CGATTCGTCCACTAGTTGAGAAGTA 60.164 44.000 0.00 0.00 0.00 2.24
498 499 4.379603 CGATTCGTCCACTAGTTGAGAAGT 60.380 45.833 0.00 0.00 0.00 3.01
499 500 4.099120 CGATTCGTCCACTAGTTGAGAAG 58.901 47.826 0.00 0.00 0.00 2.85
500 501 3.754850 TCGATTCGTCCACTAGTTGAGAA 59.245 43.478 5.89 4.53 0.00 2.87
501 502 3.340928 TCGATTCGTCCACTAGTTGAGA 58.659 45.455 5.89 0.00 0.00 3.27
502 503 3.759527 TCGATTCGTCCACTAGTTGAG 57.240 47.619 5.89 0.00 0.00 3.02
503 504 3.066342 GGATCGATTCGTCCACTAGTTGA 59.934 47.826 17.31 0.00 34.57 3.18
504 505 3.372954 GGATCGATTCGTCCACTAGTTG 58.627 50.000 17.31 0.00 34.57 3.16
505 506 2.361438 GGGATCGATTCGTCCACTAGTT 59.639 50.000 21.18 0.00 36.19 2.24
506 507 1.955080 GGGATCGATTCGTCCACTAGT 59.045 52.381 21.18 0.00 36.19 2.57
507 508 1.069159 CGGGATCGATTCGTCCACTAG 60.069 57.143 21.18 10.84 39.00 2.57
508 509 0.949397 CGGGATCGATTCGTCCACTA 59.051 55.000 21.18 0.00 39.00 2.74
539 540 3.679980 CGAAATGGGTATATGGAAGAGCG 59.320 47.826 0.00 0.00 0.00 5.03
583 588 2.050144 AGTCAGTCTCCACACCACATT 58.950 47.619 0.00 0.00 0.00 2.71
597 602 3.319122 GGCACCAGAATTTTCAAGTCAGT 59.681 43.478 0.00 0.00 0.00 3.41
652 664 4.923281 CAGTACTAAAATTGCTTTGTGGGC 59.077 41.667 0.00 0.00 0.00 5.36
769 785 3.656045 CCGCGGCGTGGAGTTTTT 61.656 61.111 34.58 0.00 34.74 1.94
770 786 4.612412 TCCGCGGCGTGGAGTTTT 62.612 61.111 36.06 0.00 37.29 2.43
771 787 4.612412 TTCCGCGGCGTGGAGTTT 62.612 61.111 36.74 0.00 43.44 2.66
772 788 4.612412 TTTCCGCGGCGTGGAGTT 62.612 61.111 36.74 0.00 43.44 3.01
773 789 3.894547 ATTTTCCGCGGCGTGGAGT 62.895 57.895 36.74 25.35 43.44 3.85
774 790 3.124921 ATTTTCCGCGGCGTGGAG 61.125 61.111 36.74 15.78 43.44 3.86
775 791 3.427425 CATTTTCCGCGGCGTGGA 61.427 61.111 36.06 36.06 40.77 4.02
776 792 2.741116 AAACATTTTCCGCGGCGTGG 62.741 55.000 32.48 32.48 33.99 4.94
777 793 0.937231 AAAACATTTTCCGCGGCGTG 60.937 50.000 23.51 17.80 0.00 5.34
778 794 0.592148 TAAAACATTTTCCGCGGCGT 59.408 45.000 23.51 9.27 0.00 5.68
809 825 2.826725 ACTAGCTCCCAACTGTACTGTC 59.173 50.000 5.81 0.00 0.00 3.51
828 844 5.930569 GGTAAAGTGTTCGAACATCCTAACT 59.069 40.000 31.81 20.30 41.59 2.24
907 923 2.030862 GCGGGGTCGGTGTTGTTA 59.969 61.111 0.00 0.00 36.79 2.41
933 949 3.595190 AATTACAGGGGTTAGATGGCC 57.405 47.619 0.00 0.00 0.00 5.36
1077 1106 2.291043 GCGGTTCTTGGAGGAGGGA 61.291 63.158 0.00 0.00 0.00 4.20
1078 1107 2.269241 GCGGTTCTTGGAGGAGGG 59.731 66.667 0.00 0.00 0.00 4.30
1320 1349 2.046217 GACGGGAAGAAGCACCCC 60.046 66.667 0.00 0.00 42.86 4.95
1636 1665 5.952347 TCTATATTCTCCACTCGGTGCATAT 59.048 40.000 0.00 0.00 31.99 1.78
1669 1698 2.189257 TGCCAACGCACAGTGTCT 59.811 55.556 1.61 0.00 41.12 3.41
1736 1765 7.966204 GCCAAAGAATATAAAAGCTCACGTAAA 59.034 33.333 0.00 0.00 0.00 2.01
1739 1768 5.648092 AGCCAAAGAATATAAAAGCTCACGT 59.352 36.000 0.00 0.00 0.00 4.49
1740 1769 5.967674 CAGCCAAAGAATATAAAAGCTCACG 59.032 40.000 0.00 0.00 0.00 4.35
1741 1770 5.745769 GCAGCCAAAGAATATAAAAGCTCAC 59.254 40.000 0.00 0.00 0.00 3.51
1742 1771 5.163519 GGCAGCCAAAGAATATAAAAGCTCA 60.164 40.000 6.55 0.00 0.00 4.26
1743 1772 5.163519 TGGCAGCCAAAGAATATAAAAGCTC 60.164 40.000 13.33 0.00 0.00 4.09
1744 1773 4.711355 TGGCAGCCAAAGAATATAAAAGCT 59.289 37.500 13.33 0.00 0.00 3.74
1753 1782 1.251251 GTGTCTGGCAGCCAAAGAAT 58.749 50.000 17.03 0.00 30.80 2.40
1765 1794 2.943033 ACGAAAAGTTTCTGGTGTCTGG 59.057 45.455 0.00 0.00 35.07 3.86
1766 1795 3.621268 TCACGAAAAGTTTCTGGTGTCTG 59.379 43.478 11.20 0.00 33.28 3.51
1772 1801 6.480524 TGTATCATCACGAAAAGTTTCTGG 57.519 37.500 0.00 0.00 35.07 3.86
1794 1823 9.712305 AGGCTAGTTATTTAATACTGTATGCTG 57.288 33.333 0.22 0.00 0.00 4.41
1824 1874 9.720769 TCTCGGTCTCAAAATATAAGAAGTTTT 57.279 29.630 0.00 0.00 0.00 2.43
1825 1875 9.892130 ATCTCGGTCTCAAAATATAAGAAGTTT 57.108 29.630 0.00 0.00 0.00 2.66
1840 2010 5.129980 TGTTACTCCTACTATCTCGGTCTCA 59.870 44.000 0.00 0.00 0.00 3.27
1841 2011 5.609423 TGTTACTCCTACTATCTCGGTCTC 58.391 45.833 0.00 0.00 0.00 3.36
1842 2012 5.627182 TGTTACTCCTACTATCTCGGTCT 57.373 43.478 0.00 0.00 0.00 3.85
1843 2013 9.664332 TTATATGTTACTCCTACTATCTCGGTC 57.336 37.037 0.00 0.00 0.00 4.79
1846 2016 9.669887 ACCTTATATGTTACTCCTACTATCTCG 57.330 37.037 0.00 0.00 0.00 4.04
1850 2020 8.951614 TGCACCTTATATGTTACTCCTACTAT 57.048 34.615 0.00 0.00 0.00 2.12
1851 2021 8.771521 TTGCACCTTATATGTTACTCCTACTA 57.228 34.615 0.00 0.00 0.00 1.82
1852 2022 7.670605 TTGCACCTTATATGTTACTCCTACT 57.329 36.000 0.00 0.00 0.00 2.57
1853 2023 6.424207 GCTTGCACCTTATATGTTACTCCTAC 59.576 42.308 0.00 0.00 0.00 3.18
1854 2024 6.522054 GCTTGCACCTTATATGTTACTCCTA 58.478 40.000 0.00 0.00 0.00 2.94
1855 2025 5.368989 GCTTGCACCTTATATGTTACTCCT 58.631 41.667 0.00 0.00 0.00 3.69
1887 2058 3.008375 TGCTCTAGGATGTTCTGCAACTT 59.992 43.478 0.00 0.00 33.17 2.66
1890 2061 3.920231 ATGCTCTAGGATGTTCTGCAA 57.080 42.857 0.00 0.00 32.66 4.08
1895 2066 8.845413 AGATATCAAAATGCTCTAGGATGTTC 57.155 34.615 5.32 0.00 0.00 3.18
1923 2094 1.533187 TGGTAGGGGCATTCATGGAT 58.467 50.000 0.00 0.00 0.00 3.41
1924 2095 1.533187 ATGGTAGGGGCATTCATGGA 58.467 50.000 0.00 0.00 0.00 3.41
1933 2104 2.576615 GATGAAGACAATGGTAGGGGC 58.423 52.381 0.00 0.00 0.00 5.80
1934 2105 2.509548 TGGATGAAGACAATGGTAGGGG 59.490 50.000 0.00 0.00 0.00 4.79
1938 2109 7.537596 AAACATTTGGATGAAGACAATGGTA 57.462 32.000 0.00 0.00 36.73 3.25
1999 2170 6.893583 AGAGTACTAGGATCACATTGCATTT 58.106 36.000 0.00 0.00 0.00 2.32
2000 2171 6.463614 GGAGAGTACTAGGATCACATTGCATT 60.464 42.308 0.00 0.00 0.00 3.56
2003 2174 4.586841 AGGAGAGTACTAGGATCACATTGC 59.413 45.833 0.00 0.00 0.00 3.56
2013 2184 4.639310 TCGCAAAAGTAGGAGAGTACTAGG 59.361 45.833 0.00 0.00 32.69 3.02
2017 2188 3.442977 TCCTCGCAAAAGTAGGAGAGTAC 59.557 47.826 0.00 0.00 34.46 2.73
2018 2189 3.693807 TCCTCGCAAAAGTAGGAGAGTA 58.306 45.455 0.00 0.00 34.46 2.59
2019 2190 2.526432 TCCTCGCAAAAGTAGGAGAGT 58.474 47.619 0.00 0.00 34.46 3.24
2042 2213 2.490509 CTGGCACTTCTGATGCATTGAA 59.509 45.455 0.00 8.19 45.27 2.69
2123 2294 2.673368 CGGAAGATGTTTAGGTGTGAGC 59.327 50.000 0.00 0.00 0.00 4.26
2310 2481 0.544697 ACAAGTAAATCGGGGCGGAT 59.455 50.000 0.00 0.00 0.00 4.18
2360 2531 2.555199 AGATTTGGCTGCTAGCGTTAG 58.445 47.619 10.77 1.33 43.62 2.34
2393 2580 5.048643 CAGGTGTATATTACCTCCGTCTCAG 60.049 48.000 8.29 0.00 45.19 3.35
2498 2685 9.848710 ATGACATTCTCTTCATCAGATTAATGT 57.151 29.630 10.33 10.33 43.83 2.71
2510 2697 8.206189 TGTATTATCTGCATGACATTCTCTTCA 58.794 33.333 0.00 0.00 0.00 3.02
2544 2731 3.066900 CCATTGTAGTAGGAGTCCTGACG 59.933 52.174 22.69 4.88 34.61 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.