Multiple sequence alignment - TraesCS3B01G198800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G198800 chr3B 100.000 5451 0 0 1 5451 226478303 226483753 0.000000e+00 10067.0
1 TraesCS3B01G198800 chr3A 95.547 4851 150 25 400 5215 173948130 173943311 0.000000e+00 7701.0
2 TraesCS3B01G198800 chr3D 96.479 2982 82 18 2269 5245 154616348 154613385 0.000000e+00 4903.0
3 TraesCS3B01G198800 chr3D 95.218 1903 61 9 402 2286 154618406 154616516 0.000000e+00 2983.0
4 TraesCS3B01G198800 chr3D 93.684 95 6 0 5357 5451 154613167 154613073 5.690000e-30 143.0
5 TraesCS3B01G198800 chrUn 100.000 401 0 0 4060 4460 478601153 478601553 0.000000e+00 741.0
6 TraesCS3B01G198800 chr5B 85.955 356 50 0 42 397 421822517 421822872 1.110000e-101 381.0
7 TraesCS3B01G198800 chr2D 85.794 359 49 2 39 396 42897168 42896811 3.980000e-101 379.0
8 TraesCS3B01G198800 chr1A 81.395 86 14 2 4665 4749 361384574 361384658 9.800000e-08 69.4
9 TraesCS3B01G198800 chr1A 97.222 36 1 0 4661 4696 533158324 533158289 1.640000e-05 62.1
10 TraesCS3B01G198800 chr1B 85.965 57 6 2 4712 4767 547173168 547173223 5.900000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G198800 chr3B 226478303 226483753 5450 False 10067.000000 10067 100.000 1 5451 1 chr3B.!!$F1 5450
1 TraesCS3B01G198800 chr3A 173943311 173948130 4819 True 7701.000000 7701 95.547 400 5215 1 chr3A.!!$R1 4815
2 TraesCS3B01G198800 chr3D 154613073 154618406 5333 True 2676.333333 4903 95.127 402 5451 3 chr3D.!!$R1 5049

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 127 0.032952 TGTCACCGTAGTTCACCAGC 59.967 55.000 0.00 0.00 0.00 4.85 F
224 225 0.034756 TCCCTGTCGTTGACATGTGG 59.965 55.000 1.15 0.00 41.94 4.17 F
375 376 0.091344 CGTCACGCGCAAGTTCTAAG 59.909 55.000 5.73 0.00 41.68 2.18 F
1156 1177 0.528033 CGAGAGCGACTACGAGGAGA 60.528 60.000 0.00 0.00 42.66 3.71 F
1185 1206 0.889186 GCCTTCTCAAGTCCGGCAAA 60.889 55.000 0.00 0.00 40.41 3.68 F
1495 1516 0.976641 TCACACCAGTGGATCCAGTC 59.023 55.000 19.75 6.69 45.91 3.51 F
1780 1801 1.216427 GGAAGAAGGAATGGGAGGCAT 59.784 52.381 0.00 0.00 0.00 4.40 F
2030 2051 2.027377 ACTTGCAGGATCTGGAGACAAG 60.027 50.000 1.40 0.00 42.06 3.16 F
3612 3824 1.716581 GAACTTGAGCTCGAAGTGACG 59.283 52.381 23.40 7.87 33.85 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 1779 0.181350 CCTCCCATTCCTTCTTCCCG 59.819 60.000 0.00 0.00 0.00 5.14 R
1780 1801 1.451504 CACCTCCACAACTGCTCCA 59.548 57.895 0.00 0.00 0.00 3.86 R
1809 1830 2.493675 CTCACCATTCTCGTTCTCCTCA 59.506 50.000 0.00 0.00 0.00 3.86 R
2402 2612 0.610174 CTGGTTCTGCACTCCTGCTA 59.390 55.000 0.00 0.00 44.57 3.49 R
2460 2670 6.119144 TGTTAAAGCAGACAAGAGACAAAC 57.881 37.500 0.00 0.00 0.00 2.93 R
3102 3314 6.539464 ACAAGTAACAGATACCGTGTCAAAAA 59.461 34.615 0.00 0.00 34.89 1.94 R
3612 3824 0.099436 GGAGTGTGCCATTCAATCGC 59.901 55.000 1.38 0.00 31.85 4.58 R
3938 4150 1.038681 TACCGATAGCTGTTCGCCCA 61.039 55.000 13.62 0.97 40.39 5.36 R
4749 4977 0.836400 AATACTCCATCCGCCCCGAT 60.836 55.000 0.00 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.972107 ATGTGTCCAAATTCTTTCTGAGG 57.028 39.130 0.00 0.00 0.00 3.86
23 24 4.144297 TGTGTCCAAATTCTTTCTGAGGG 58.856 43.478 0.00 0.00 0.00 4.30
24 25 4.145052 GTGTCCAAATTCTTTCTGAGGGT 58.855 43.478 0.00 0.00 0.00 4.34
25 26 4.216472 GTGTCCAAATTCTTTCTGAGGGTC 59.784 45.833 0.00 0.00 0.00 4.46
26 27 4.141274 TGTCCAAATTCTTTCTGAGGGTCA 60.141 41.667 0.00 0.00 0.00 4.02
27 28 4.827284 GTCCAAATTCTTTCTGAGGGTCAA 59.173 41.667 0.00 0.00 0.00 3.18
28 29 5.048434 GTCCAAATTCTTTCTGAGGGTCAAG 60.048 44.000 0.00 0.00 0.00 3.02
29 30 4.829492 CCAAATTCTTTCTGAGGGTCAAGT 59.171 41.667 0.00 0.00 0.00 3.16
30 31 5.302823 CCAAATTCTTTCTGAGGGTCAAGTT 59.697 40.000 0.00 0.00 0.00 2.66
31 32 6.211515 CAAATTCTTTCTGAGGGTCAAGTTG 58.788 40.000 0.00 0.00 0.00 3.16
32 33 4.771114 TTCTTTCTGAGGGTCAAGTTGA 57.229 40.909 0.08 0.08 0.00 3.18
33 34 4.982241 TCTTTCTGAGGGTCAAGTTGAT 57.018 40.909 9.18 0.00 0.00 2.57
34 35 4.899502 TCTTTCTGAGGGTCAAGTTGATC 58.100 43.478 9.18 8.40 0.00 2.92
35 36 4.347876 TCTTTCTGAGGGTCAAGTTGATCA 59.652 41.667 17.73 12.07 0.00 2.92
36 37 3.685139 TCTGAGGGTCAAGTTGATCAC 57.315 47.619 17.73 11.15 0.00 3.06
37 38 2.303022 TCTGAGGGTCAAGTTGATCACC 59.697 50.000 17.73 15.26 0.00 4.02
38 39 2.304180 CTGAGGGTCAAGTTGATCACCT 59.696 50.000 17.73 19.17 32.90 4.00
39 40 2.303022 TGAGGGTCAAGTTGATCACCTC 59.697 50.000 29.06 29.06 41.18 3.85
40 41 2.569404 GAGGGTCAAGTTGATCACCTCT 59.431 50.000 28.77 16.18 39.45 3.69
41 42 3.769844 GAGGGTCAAGTTGATCACCTCTA 59.230 47.826 28.77 0.45 39.45 2.43
42 43 3.515901 AGGGTCAAGTTGATCACCTCTAC 59.484 47.826 17.73 0.00 0.00 2.59
43 44 3.260884 GGGTCAAGTTGATCACCTCTACA 59.739 47.826 17.73 0.00 32.74 2.74
44 45 4.246458 GGTCAAGTTGATCACCTCTACAC 58.754 47.826 11.38 0.00 32.74 2.90
45 46 4.262463 GGTCAAGTTGATCACCTCTACACA 60.262 45.833 11.38 0.00 32.74 3.72
46 47 5.297547 GTCAAGTTGATCACCTCTACACAA 58.702 41.667 9.18 0.00 32.74 3.33
47 48 5.758296 GTCAAGTTGATCACCTCTACACAAA 59.242 40.000 9.18 0.00 32.74 2.83
48 49 6.260050 GTCAAGTTGATCACCTCTACACAAAA 59.740 38.462 9.18 0.00 32.74 2.44
49 50 6.826231 TCAAGTTGATCACCTCTACACAAAAA 59.174 34.615 0.08 0.00 32.74 1.94
79 80 8.999431 ACGACAATCTAAATTCATTTACACTGT 58.001 29.630 0.00 0.00 0.00 3.55
80 81 9.825972 CGACAATCTAAATTCATTTACACTGTT 57.174 29.630 0.00 0.00 0.00 3.16
82 83 9.825972 ACAATCTAAATTCATTTACACTGTTCG 57.174 29.630 0.00 0.00 0.00 3.95
83 84 9.825972 CAATCTAAATTCATTTACACTGTTCGT 57.174 29.630 0.00 0.00 0.00 3.85
85 86 9.825972 ATCTAAATTCATTTACACTGTTCGTTG 57.174 29.630 0.00 0.00 0.00 4.10
86 87 9.047371 TCTAAATTCATTTACACTGTTCGTTGA 57.953 29.630 0.00 0.00 0.00 3.18
87 88 9.825972 CTAAATTCATTTACACTGTTCGTTGAT 57.174 29.630 0.00 0.00 0.00 2.57
90 91 9.825972 AATTCATTTACACTGTTCGTTGATTAG 57.174 29.630 0.00 0.00 0.00 1.73
91 92 7.359262 TCATTTACACTGTTCGTTGATTAGG 57.641 36.000 0.00 0.00 0.00 2.69
92 93 6.932400 TCATTTACACTGTTCGTTGATTAGGT 59.068 34.615 0.00 0.00 0.00 3.08
93 94 6.533819 TTTACACTGTTCGTTGATTAGGTG 57.466 37.500 0.00 0.00 0.00 4.00
94 95 3.399330 ACACTGTTCGTTGATTAGGTGG 58.601 45.455 0.00 0.00 0.00 4.61
95 96 2.159627 CACTGTTCGTTGATTAGGTGGC 59.840 50.000 0.00 0.00 0.00 5.01
96 97 2.224426 ACTGTTCGTTGATTAGGTGGCA 60.224 45.455 0.00 0.00 0.00 4.92
97 98 2.147958 TGTTCGTTGATTAGGTGGCAC 58.852 47.619 9.70 9.70 0.00 5.01
98 99 1.467342 GTTCGTTGATTAGGTGGCACC 59.533 52.381 29.32 29.32 38.99 5.01
99 100 0.035820 TCGTTGATTAGGTGGCACCC 60.036 55.000 32.30 17.70 39.75 4.61
100 101 0.322098 CGTTGATTAGGTGGCACCCA 60.322 55.000 32.30 18.04 39.75 4.51
109 110 2.686632 TGGCACCCACCAGTTTGT 59.313 55.556 0.00 0.00 33.75 2.83
110 111 1.454847 TGGCACCCACCAGTTTGTC 60.455 57.895 0.00 0.00 33.75 3.18
111 112 1.454847 GGCACCCACCAGTTTGTCA 60.455 57.895 0.00 0.00 0.00 3.58
112 113 1.733526 GCACCCACCAGTTTGTCAC 59.266 57.895 0.00 0.00 0.00 3.67
113 114 1.734388 GCACCCACCAGTTTGTCACC 61.734 60.000 0.00 0.00 0.00 4.02
114 115 1.153046 ACCCACCAGTTTGTCACCG 60.153 57.895 0.00 0.00 0.00 4.94
115 116 1.153046 CCCACCAGTTTGTCACCGT 60.153 57.895 0.00 0.00 0.00 4.83
116 117 0.107081 CCCACCAGTTTGTCACCGTA 59.893 55.000 0.00 0.00 0.00 4.02
117 118 1.508632 CCACCAGTTTGTCACCGTAG 58.491 55.000 0.00 0.00 0.00 3.51
118 119 1.202604 CCACCAGTTTGTCACCGTAGT 60.203 52.381 0.00 0.00 0.00 2.73
119 120 2.557317 CACCAGTTTGTCACCGTAGTT 58.443 47.619 0.00 0.00 0.00 2.24
120 121 2.542595 CACCAGTTTGTCACCGTAGTTC 59.457 50.000 0.00 0.00 0.00 3.01
121 122 2.168936 ACCAGTTTGTCACCGTAGTTCA 59.831 45.455 0.00 0.00 0.00 3.18
122 123 2.542595 CCAGTTTGTCACCGTAGTTCAC 59.457 50.000 0.00 0.00 0.00 3.18
123 124 2.542595 CAGTTTGTCACCGTAGTTCACC 59.457 50.000 0.00 0.00 0.00 4.02
124 125 2.168936 AGTTTGTCACCGTAGTTCACCA 59.831 45.455 0.00 0.00 0.00 4.17
125 126 2.519377 TTGTCACCGTAGTTCACCAG 57.481 50.000 0.00 0.00 0.00 4.00
126 127 0.032952 TGTCACCGTAGTTCACCAGC 59.967 55.000 0.00 0.00 0.00 4.85
127 128 0.317479 GTCACCGTAGTTCACCAGCT 59.683 55.000 0.00 0.00 0.00 4.24
128 129 1.045407 TCACCGTAGTTCACCAGCTT 58.955 50.000 0.00 0.00 0.00 3.74
129 130 1.414919 TCACCGTAGTTCACCAGCTTT 59.585 47.619 0.00 0.00 0.00 3.51
130 131 2.158871 TCACCGTAGTTCACCAGCTTTT 60.159 45.455 0.00 0.00 0.00 2.27
131 132 3.069872 TCACCGTAGTTCACCAGCTTTTA 59.930 43.478 0.00 0.00 0.00 1.52
132 133 4.000988 CACCGTAGTTCACCAGCTTTTAT 58.999 43.478 0.00 0.00 0.00 1.40
133 134 4.000988 ACCGTAGTTCACCAGCTTTTATG 58.999 43.478 0.00 0.00 0.00 1.90
134 135 3.181510 CCGTAGTTCACCAGCTTTTATGC 60.182 47.826 0.00 0.00 0.00 3.14
135 136 3.435327 CGTAGTTCACCAGCTTTTATGCA 59.565 43.478 0.00 0.00 34.99 3.96
136 137 4.094887 CGTAGTTCACCAGCTTTTATGCAT 59.905 41.667 3.79 3.79 34.99 3.96
137 138 5.293324 CGTAGTTCACCAGCTTTTATGCATA 59.707 40.000 1.16 1.16 34.99 3.14
138 139 6.017934 CGTAGTTCACCAGCTTTTATGCATAT 60.018 38.462 7.36 0.00 34.99 1.78
139 140 6.780457 AGTTCACCAGCTTTTATGCATATT 57.220 33.333 7.36 0.00 34.99 1.28
140 141 7.174107 AGTTCACCAGCTTTTATGCATATTT 57.826 32.000 7.36 0.00 34.99 1.40
141 142 8.292444 AGTTCACCAGCTTTTATGCATATTTA 57.708 30.769 7.36 0.00 34.99 1.40
142 143 8.748412 AGTTCACCAGCTTTTATGCATATTTAA 58.252 29.630 7.36 0.00 34.99 1.52
143 144 9.364989 GTTCACCAGCTTTTATGCATATTTAAA 57.635 29.630 7.36 4.66 34.99 1.52
167 168 8.990163 AATAAAAGTTGAGGGTCTTTTCTACA 57.010 30.769 6.23 0.00 41.83 2.74
168 169 8.990163 ATAAAAGTTGAGGGTCTTTTCTACAA 57.010 30.769 6.23 0.00 41.83 2.41
169 170 7.712204 AAAAGTTGAGGGTCTTTTCTACAAA 57.288 32.000 0.00 0.00 38.86 2.83
170 171 7.712204 AAAGTTGAGGGTCTTTTCTACAAAA 57.288 32.000 0.00 0.00 30.99 2.44
171 172 7.712204 AAGTTGAGGGTCTTTTCTACAAAAA 57.288 32.000 0.00 0.00 30.90 1.94
189 190 4.436242 AAAAAGATCATGCACAGCTCAG 57.564 40.909 0.00 0.00 0.00 3.35
190 191 1.380524 AAGATCATGCACAGCTCAGC 58.619 50.000 0.00 0.00 0.00 4.26
191 192 0.464013 AGATCATGCACAGCTCAGCC 60.464 55.000 0.00 0.00 0.00 4.85
192 193 0.746923 GATCATGCACAGCTCAGCCA 60.747 55.000 0.00 0.00 0.00 4.75
193 194 0.323087 ATCATGCACAGCTCAGCCAA 60.323 50.000 0.00 0.00 0.00 4.52
194 195 1.211969 CATGCACAGCTCAGCCAAC 59.788 57.895 0.00 0.00 0.00 3.77
195 196 2.330372 ATGCACAGCTCAGCCAACG 61.330 57.895 0.00 0.00 0.00 4.10
196 197 4.395583 GCACAGCTCAGCCAACGC 62.396 66.667 0.00 0.00 0.00 4.84
197 198 3.730761 CACAGCTCAGCCAACGCC 61.731 66.667 0.00 0.00 34.57 5.68
198 199 3.946201 ACAGCTCAGCCAACGCCT 61.946 61.111 0.00 0.00 34.57 5.52
199 200 3.123620 CAGCTCAGCCAACGCCTC 61.124 66.667 0.00 0.00 34.57 4.70
200 201 4.400961 AGCTCAGCCAACGCCTCC 62.401 66.667 0.00 0.00 34.57 4.30
202 203 3.710722 CTCAGCCAACGCCTCCCT 61.711 66.667 0.00 0.00 34.57 4.20
203 204 3.965539 CTCAGCCAACGCCTCCCTG 62.966 68.421 0.00 0.00 34.57 4.45
207 208 4.785453 CCAACGCCTCCCTGCTCC 62.785 72.222 0.00 0.00 0.00 4.70
208 209 4.785453 CAACGCCTCCCTGCTCCC 62.785 72.222 0.00 0.00 0.00 4.30
212 213 3.791586 GCCTCCCTGCTCCCTGTC 61.792 72.222 0.00 0.00 0.00 3.51
213 214 3.465403 CCTCCCTGCTCCCTGTCG 61.465 72.222 0.00 0.00 0.00 4.35
214 215 2.681778 CTCCCTGCTCCCTGTCGT 60.682 66.667 0.00 0.00 0.00 4.34
215 216 2.203788 TCCCTGCTCCCTGTCGTT 60.204 61.111 0.00 0.00 0.00 3.85
216 217 2.046892 CCCTGCTCCCTGTCGTTG 60.047 66.667 0.00 0.00 0.00 4.10
217 218 2.583441 CCCTGCTCCCTGTCGTTGA 61.583 63.158 0.00 0.00 0.00 3.18
218 219 1.374758 CCTGCTCCCTGTCGTTGAC 60.375 63.158 0.00 0.00 0.00 3.18
219 220 1.367471 CTGCTCCCTGTCGTTGACA 59.633 57.895 0.00 0.00 40.50 3.58
220 221 0.036952 CTGCTCCCTGTCGTTGACAT 60.037 55.000 0.00 0.00 41.94 3.06
221 222 0.320683 TGCTCCCTGTCGTTGACATG 60.321 55.000 0.00 0.00 41.94 3.21
222 223 0.320771 GCTCCCTGTCGTTGACATGT 60.321 55.000 0.00 0.00 41.94 3.21
223 224 1.432514 CTCCCTGTCGTTGACATGTG 58.567 55.000 1.15 0.00 41.94 3.21
224 225 0.034756 TCCCTGTCGTTGACATGTGG 59.965 55.000 1.15 0.00 41.94 4.17
225 226 0.955428 CCCTGTCGTTGACATGTGGG 60.955 60.000 1.15 0.22 41.94 4.61
226 227 1.577328 CCTGTCGTTGACATGTGGGC 61.577 60.000 1.15 0.00 41.94 5.36
227 228 1.577328 CTGTCGTTGACATGTGGGCC 61.577 60.000 1.15 0.00 41.94 5.80
228 229 2.033448 TCGTTGACATGTGGGCCC 59.967 61.111 17.59 17.59 0.00 5.80
229 230 2.034066 CGTTGACATGTGGGCCCT 59.966 61.111 25.70 0.15 0.00 5.19
230 231 1.603455 CGTTGACATGTGGGCCCTT 60.603 57.895 25.70 4.77 0.00 3.95
231 232 1.865788 CGTTGACATGTGGGCCCTTG 61.866 60.000 25.70 19.75 0.00 3.61
232 233 1.907807 TTGACATGTGGGCCCTTGC 60.908 57.895 25.70 13.89 0.00 4.01
249 250 2.036098 CCAATCTGGCCTGCCACA 59.964 61.111 6.80 0.00 41.89 4.17
250 251 2.345760 CCAATCTGGCCTGCCACAC 61.346 63.158 6.80 0.00 41.89 3.82
251 252 1.604308 CAATCTGGCCTGCCACACA 60.604 57.895 6.80 0.00 41.89 3.72
252 253 0.968901 CAATCTGGCCTGCCACACAT 60.969 55.000 6.80 0.00 41.89 3.21
253 254 0.968901 AATCTGGCCTGCCACACATG 60.969 55.000 6.80 0.00 41.89 3.21
264 265 3.758715 CACACATGGAGCGGATACA 57.241 52.632 0.00 0.00 0.00 2.29
265 266 1.290203 CACACATGGAGCGGATACAC 58.710 55.000 0.00 0.00 0.00 2.90
266 267 0.178068 ACACATGGAGCGGATACACC 59.822 55.000 0.00 0.00 0.00 4.16
267 268 0.532862 CACATGGAGCGGATACACCC 60.533 60.000 0.00 0.00 34.64 4.61
274 275 2.800053 CGGATACACCCGCGTACA 59.200 61.111 4.92 0.00 43.25 2.90
275 276 1.298863 CGGATACACCCGCGTACAG 60.299 63.158 4.92 0.00 43.25 2.74
276 277 1.066918 GGATACACCCGCGTACAGG 59.933 63.158 4.92 0.45 0.00 4.00
277 278 1.386525 GGATACACCCGCGTACAGGA 61.387 60.000 4.92 0.00 0.00 3.86
278 279 0.457035 GATACACCCGCGTACAGGAA 59.543 55.000 4.92 0.00 0.00 3.36
279 280 1.068127 GATACACCCGCGTACAGGAAT 59.932 52.381 4.92 0.00 0.00 3.01
280 281 0.896923 TACACCCGCGTACAGGAATT 59.103 50.000 4.92 0.00 0.00 2.17
281 282 0.672401 ACACCCGCGTACAGGAATTG 60.672 55.000 4.92 0.00 0.00 2.32
282 283 1.078708 ACCCGCGTACAGGAATTGG 60.079 57.895 4.92 0.00 0.00 3.16
283 284 1.817941 CCCGCGTACAGGAATTGGG 60.818 63.158 4.92 0.00 0.00 4.12
284 285 1.219664 CCGCGTACAGGAATTGGGA 59.780 57.895 4.92 0.00 0.00 4.37
285 286 1.087771 CCGCGTACAGGAATTGGGAC 61.088 60.000 4.92 0.00 0.00 4.46
286 287 1.087771 CGCGTACAGGAATTGGGACC 61.088 60.000 0.00 0.00 0.00 4.46
287 288 1.087771 GCGTACAGGAATTGGGACCG 61.088 60.000 0.00 0.00 0.00 4.79
288 289 0.248289 CGTACAGGAATTGGGACCGT 59.752 55.000 0.00 0.00 0.00 4.83
289 290 1.477700 CGTACAGGAATTGGGACCGTA 59.522 52.381 0.00 0.00 0.00 4.02
290 291 2.101917 CGTACAGGAATTGGGACCGTAT 59.898 50.000 0.00 0.00 0.00 3.06
291 292 3.431207 CGTACAGGAATTGGGACCGTATT 60.431 47.826 0.00 0.00 0.00 1.89
292 293 3.732048 ACAGGAATTGGGACCGTATTT 57.268 42.857 0.00 0.00 0.00 1.40
293 294 3.352648 ACAGGAATTGGGACCGTATTTG 58.647 45.455 0.00 0.00 0.00 2.32
294 295 2.099098 CAGGAATTGGGACCGTATTTGC 59.901 50.000 0.00 0.00 0.00 3.68
295 296 2.096248 GGAATTGGGACCGTATTTGCA 58.904 47.619 0.00 0.00 0.00 4.08
296 297 2.159296 GGAATTGGGACCGTATTTGCAC 60.159 50.000 0.00 0.00 0.00 4.57
297 298 1.091537 ATTGGGACCGTATTTGCACG 58.908 50.000 0.00 0.00 41.59 5.34
298 299 1.579084 TTGGGACCGTATTTGCACGC 61.579 55.000 0.00 0.00 40.59 5.34
299 300 2.757056 GGGACCGTATTTGCACGCC 61.757 63.158 0.00 0.00 40.59 5.68
300 301 2.757056 GGACCGTATTTGCACGCCC 61.757 63.158 0.00 0.00 40.59 6.13
301 302 1.743995 GACCGTATTTGCACGCCCT 60.744 57.895 0.00 0.00 40.59 5.19
302 303 1.702491 GACCGTATTTGCACGCCCTC 61.702 60.000 0.00 0.00 40.59 4.30
303 304 2.701006 CGTATTTGCACGCCCTCG 59.299 61.111 0.00 0.00 42.43 4.63
304 305 2.403586 GTATTTGCACGCCCTCGC 59.596 61.111 0.00 0.00 39.84 5.03
305 306 2.046796 TATTTGCACGCCCTCGCA 60.047 55.556 0.00 0.00 39.84 5.10
306 307 1.672682 TATTTGCACGCCCTCGCAA 60.673 52.632 0.00 0.00 45.93 4.85
308 309 4.927782 TTGCACGCCCTCGCAAGT 62.928 61.111 0.00 0.00 42.93 3.16
309 310 4.927782 TGCACGCCCTCGCAAGTT 62.928 61.111 0.00 0.00 39.84 2.66
310 311 3.660111 GCACGCCCTCGCAAGTTT 61.660 61.111 0.00 0.00 39.84 2.66
311 312 2.252260 CACGCCCTCGCAAGTTTG 59.748 61.111 0.00 0.00 39.84 2.93
312 313 2.110213 ACGCCCTCGCAAGTTTGA 59.890 55.556 0.00 0.00 39.84 2.69
313 314 1.302511 ACGCCCTCGCAAGTTTGAT 60.303 52.632 0.00 0.00 39.84 2.57
314 315 1.135315 CGCCCTCGCAAGTTTGATG 59.865 57.895 0.00 0.00 39.48 3.07
315 316 1.298157 CGCCCTCGCAAGTTTGATGA 61.298 55.000 0.00 0.00 39.48 2.92
316 317 0.169009 GCCCTCGCAAGTTTGATGAC 59.831 55.000 0.00 0.00 39.48 3.06
317 318 1.813513 CCCTCGCAAGTTTGATGACT 58.186 50.000 0.00 0.00 39.48 3.41
318 319 1.466167 CCCTCGCAAGTTTGATGACTG 59.534 52.381 0.00 0.00 39.48 3.51
319 320 2.416747 CCTCGCAAGTTTGATGACTGA 58.583 47.619 0.00 0.00 39.48 3.41
320 321 2.807967 CCTCGCAAGTTTGATGACTGAA 59.192 45.455 0.00 0.00 39.48 3.02
321 322 3.250762 CCTCGCAAGTTTGATGACTGAAA 59.749 43.478 0.00 0.00 39.48 2.69
322 323 4.083110 CCTCGCAAGTTTGATGACTGAAAT 60.083 41.667 0.00 0.00 39.48 2.17
323 324 5.034554 TCGCAAGTTTGATGACTGAAATC 57.965 39.130 0.00 0.00 39.48 2.17
324 325 4.514816 TCGCAAGTTTGATGACTGAAATCA 59.485 37.500 0.00 0.00 39.48 2.57
325 326 4.614284 CGCAAGTTTGATGACTGAAATCAC 59.386 41.667 0.00 0.00 33.84 3.06
326 327 4.614284 GCAAGTTTGATGACTGAAATCACG 59.386 41.667 0.00 0.00 33.84 4.35
327 328 5.751680 CAAGTTTGATGACTGAAATCACGT 58.248 37.500 0.00 0.00 33.84 4.49
328 329 6.565811 GCAAGTTTGATGACTGAAATCACGTA 60.566 38.462 0.00 0.00 33.84 3.57
329 330 7.521529 CAAGTTTGATGACTGAAATCACGTAT 58.478 34.615 0.00 0.00 33.84 3.06
330 331 7.672983 AGTTTGATGACTGAAATCACGTATT 57.327 32.000 0.00 0.00 33.84 1.89
331 332 8.771920 AGTTTGATGACTGAAATCACGTATTA 57.228 30.769 0.00 0.00 33.84 0.98
332 333 9.383519 AGTTTGATGACTGAAATCACGTATTAT 57.616 29.630 0.00 0.00 33.84 1.28
335 336 9.810545 TTGATGACTGAAATCACGTATTATACA 57.189 29.630 3.16 0.00 33.84 2.29
336 337 9.810545 TGATGACTGAAATCACGTATTATACAA 57.189 29.630 3.16 0.00 0.00 2.41
338 339 9.817809 ATGACTGAAATCACGTATTATACAAGT 57.182 29.630 3.16 0.00 0.00 3.16
339 340 9.647797 TGACTGAAATCACGTATTATACAAGTT 57.352 29.630 3.16 0.00 0.00 2.66
344 345 8.889849 AAATCACGTATTATACAAGTTTGTGC 57.110 30.769 7.73 0.00 42.31 4.57
345 346 7.603963 ATCACGTATTATACAAGTTTGTGCA 57.396 32.000 7.73 0.00 42.31 4.57
346 347 7.603963 TCACGTATTATACAAGTTTGTGCAT 57.396 32.000 7.73 0.00 42.31 3.96
347 348 7.680982 TCACGTATTATACAAGTTTGTGCATC 58.319 34.615 7.73 0.00 42.31 3.91
348 349 7.332182 TCACGTATTATACAAGTTTGTGCATCA 59.668 33.333 7.73 0.00 42.31 3.07
349 350 7.960195 CACGTATTATACAAGTTTGTGCATCAA 59.040 33.333 7.73 0.00 42.31 2.57
350 351 8.508062 ACGTATTATACAAGTTTGTGCATCAAA 58.492 29.630 7.73 9.46 42.31 2.69
359 360 3.811722 TTGTGCATCAAACTGATCGTC 57.188 42.857 0.00 0.00 34.28 4.20
360 361 2.765122 TGTGCATCAAACTGATCGTCA 58.235 42.857 0.00 0.00 34.28 4.35
361 362 2.480037 TGTGCATCAAACTGATCGTCAC 59.520 45.455 0.00 6.39 34.28 3.67
362 363 1.726248 TGCATCAAACTGATCGTCACG 59.274 47.619 0.00 0.00 34.28 4.35
363 364 1.527793 GCATCAAACTGATCGTCACGC 60.528 52.381 0.00 0.00 34.28 5.34
364 365 0.992072 ATCAAACTGATCGTCACGCG 59.008 50.000 3.53 3.53 43.01 6.01
365 366 1.225475 CAAACTGATCGTCACGCGC 60.225 57.895 5.73 0.00 41.07 6.86
366 367 1.663388 AAACTGATCGTCACGCGCA 60.663 52.632 5.73 0.00 41.07 6.09
367 368 1.218875 AAACTGATCGTCACGCGCAA 61.219 50.000 5.73 0.00 41.07 4.85
368 369 1.617755 AACTGATCGTCACGCGCAAG 61.618 55.000 5.73 0.00 41.07 4.01
369 370 2.049526 TGATCGTCACGCGCAAGT 60.050 55.556 5.73 0.00 41.07 3.16
370 371 1.617755 CTGATCGTCACGCGCAAGTT 61.618 55.000 5.73 0.00 41.07 2.66
371 372 1.057361 GATCGTCACGCGCAAGTTC 59.943 57.895 5.73 0.00 41.07 3.01
372 373 1.344942 GATCGTCACGCGCAAGTTCT 61.345 55.000 5.73 0.00 41.07 3.01
373 374 0.109458 ATCGTCACGCGCAAGTTCTA 60.109 50.000 5.73 0.00 41.07 2.10
374 375 0.318022 TCGTCACGCGCAAGTTCTAA 60.318 50.000 5.73 0.00 41.07 2.10
375 376 0.091344 CGTCACGCGCAAGTTCTAAG 59.909 55.000 5.73 0.00 41.68 2.18
376 377 1.415374 GTCACGCGCAAGTTCTAAGA 58.585 50.000 5.73 0.00 41.68 2.10
377 378 1.124477 GTCACGCGCAAGTTCTAAGAC 59.876 52.381 5.73 0.00 41.68 3.01
378 379 1.000607 TCACGCGCAAGTTCTAAGACT 60.001 47.619 5.73 0.00 41.68 3.24
379 380 2.227149 TCACGCGCAAGTTCTAAGACTA 59.773 45.455 5.73 0.00 41.68 2.59
380 381 2.341760 CACGCGCAAGTTCTAAGACTAC 59.658 50.000 5.73 0.00 41.68 2.73
381 382 2.030540 ACGCGCAAGTTCTAAGACTACA 60.031 45.455 5.73 0.00 41.68 2.74
382 383 2.594654 CGCGCAAGTTCTAAGACTACAG 59.405 50.000 8.75 0.00 41.68 2.74
383 384 2.924290 GCGCAAGTTCTAAGACTACAGG 59.076 50.000 0.30 0.00 41.68 4.00
384 385 3.614390 GCGCAAGTTCTAAGACTACAGGT 60.614 47.826 0.30 0.00 41.68 4.00
385 386 3.921021 CGCAAGTTCTAAGACTACAGGTG 59.079 47.826 0.00 0.00 0.00 4.00
386 387 4.558898 CGCAAGTTCTAAGACTACAGGTGT 60.559 45.833 0.00 0.00 0.00 4.16
387 388 5.335426 CGCAAGTTCTAAGACTACAGGTGTA 60.335 44.000 0.00 0.00 0.00 2.90
388 389 6.625300 CGCAAGTTCTAAGACTACAGGTGTAT 60.625 42.308 0.00 0.00 0.00 2.29
389 390 7.097834 GCAAGTTCTAAGACTACAGGTGTATT 58.902 38.462 0.00 0.00 0.00 1.89
390 391 7.603024 GCAAGTTCTAAGACTACAGGTGTATTT 59.397 37.037 0.00 0.00 0.00 1.40
393 394 8.747471 AGTTCTAAGACTACAGGTGTATTTACC 58.253 37.037 0.00 0.00 41.17 2.85
445 446 5.682212 GCAAAGGCATCCTAAAAATAGGTGG 60.682 44.000 2.06 0.00 40.72 4.61
517 518 1.078214 CGAGAGCCAGGGCAAATCA 60.078 57.895 13.63 0.00 44.88 2.57
533 534 5.393461 GGCAAATCAGTCAAATCAACCCTAG 60.393 44.000 0.00 0.00 0.00 3.02
534 535 5.183904 GCAAATCAGTCAAATCAACCCTAGT 59.816 40.000 0.00 0.00 0.00 2.57
535 536 6.374333 GCAAATCAGTCAAATCAACCCTAGTA 59.626 38.462 0.00 0.00 0.00 1.82
536 537 7.626452 GCAAATCAGTCAAATCAACCCTAGTAC 60.626 40.741 0.00 0.00 0.00 2.73
539 540 5.711506 TCAGTCAAATCAACCCTAGTACGTA 59.288 40.000 0.00 0.00 0.00 3.57
563 564 2.281762 GTCTCCGCTTACGTATTGCAAG 59.718 50.000 17.30 13.96 37.70 4.01
564 565 1.003851 TCCGCTTACGTATTGCAAGC 58.996 50.000 17.30 13.79 40.98 4.01
607 608 1.000394 TCTGCACGAAATCGAAGGACA 60.000 47.619 10.16 0.00 43.02 4.02
632 645 4.394712 GCGACTGACTGGTGGGGG 62.395 72.222 0.00 0.00 0.00 5.40
654 667 2.885861 CACCTCGTCCTTCCTCCG 59.114 66.667 0.00 0.00 0.00 4.63
870 885 1.407299 CGTGCCATTCTGGAATCTGGA 60.407 52.381 7.04 0.00 40.96 3.86
872 887 3.494924 CGTGCCATTCTGGAATCTGGATA 60.495 47.826 7.04 0.00 40.96 2.59
927 942 4.202080 TGAGTCTTTTCGTTCCTCTTTCGA 60.202 41.667 0.00 0.00 0.00 3.71
947 964 7.539712 TTCGATGATTTCACTCCAATCTTAC 57.460 36.000 0.00 0.00 32.63 2.34
948 965 6.878317 TCGATGATTTCACTCCAATCTTACT 58.122 36.000 0.00 0.00 32.63 2.24
953 970 8.868522 TGATTTCACTCCAATCTTACTGATTT 57.131 30.769 0.00 0.00 43.00 2.17
957 974 5.250543 TCACTCCAATCTTACTGATTTCCCA 59.749 40.000 0.00 0.00 43.00 4.37
978 995 1.004044 CCTCAAATCCTGCCAGTCTGT 59.996 52.381 0.00 0.00 0.00 3.41
1156 1177 0.528033 CGAGAGCGACTACGAGGAGA 60.528 60.000 0.00 0.00 42.66 3.71
1185 1206 0.889186 GCCTTCTCAAGTCCGGCAAA 60.889 55.000 0.00 0.00 40.41 3.68
1248 1269 1.603455 CCCCGGCAAGAAGAAGCAA 60.603 57.895 0.00 0.00 0.00 3.91
1410 1431 1.411246 TCCACTATCGTTGGGATTCCG 59.589 52.381 0.00 0.00 36.55 4.30
1420 1441 2.124695 GGATTCCGGGTGCCACTC 60.125 66.667 0.00 0.00 0.00 3.51
1421 1442 2.124695 GATTCCGGGTGCCACTCC 60.125 66.667 0.00 0.00 0.00 3.85
1423 1444 2.270874 GATTCCGGGTGCCACTCCAT 62.271 60.000 0.00 0.00 0.00 3.41
1428 1449 2.439156 GGTGCCACTCCATCTGCC 60.439 66.667 0.00 0.00 0.00 4.85
1465 1486 1.202927 CCTCTGACAAAGGAAAGGCCA 60.203 52.381 5.01 0.00 40.02 5.36
1495 1516 0.976641 TCACACCAGTGGATCCAGTC 59.023 55.000 19.75 6.69 45.91 3.51
1507 1528 4.704833 CCAGTCCCGTGGCAGTGG 62.705 72.222 0.00 0.00 0.00 4.00
1508 1529 3.625897 CAGTCCCGTGGCAGTGGA 61.626 66.667 7.26 4.09 0.00 4.02
1510 1531 1.305802 AGTCCCGTGGCAGTGGATA 60.306 57.895 8.07 0.00 0.00 2.59
1595 1616 1.614903 TGCAGGGTTCAATGCTGAAAG 59.385 47.619 0.00 0.00 43.18 2.62
1710 1731 3.943137 TAGTCCTGGCTGGGGTGGG 62.943 68.421 10.79 0.00 36.20 4.61
1758 1779 8.045176 AGAACCAATTCAGTGTAAATAAGCTC 57.955 34.615 0.00 0.00 37.29 4.09
1780 1801 1.216427 GGAAGAAGGAATGGGAGGCAT 59.784 52.381 0.00 0.00 0.00 4.40
1809 1830 3.626924 GGAGGTGCTGTGGACGGT 61.627 66.667 0.00 0.00 0.00 4.83
1910 1931 5.608437 TGGGAAGATACTTGAGGAAGCATAT 59.392 40.000 0.00 0.00 31.68 1.78
2030 2051 2.027377 ACTTGCAGGATCTGGAGACAAG 60.027 50.000 1.40 0.00 42.06 3.16
2121 2142 2.222027 GAAGGTACACTGTGCTGCTTT 58.778 47.619 7.90 2.08 0.00 3.51
2205 2226 4.641989 GCAGAAGATCATTTACCCATGTGT 59.358 41.667 0.00 0.00 0.00 3.72
2272 2293 5.988310 TCAGTCGGAACCTTGTATTTCTA 57.012 39.130 0.00 0.00 0.00 2.10
2402 2612 4.757149 GTGCTCTTTGTTGATTAGACAGGT 59.243 41.667 0.00 0.00 0.00 4.00
2446 2656 4.996758 ACTTTTGTTGGCCTTTCATTATGC 59.003 37.500 3.32 0.00 0.00 3.14
2460 2670 8.961092 CCTTTCATTATGCATGTAATTTCTTCG 58.039 33.333 10.16 0.00 34.06 3.79
2884 3094 5.358442 GTCTCCTATCATGCCTACGATACAT 59.642 44.000 0.00 0.00 0.00 2.29
2986 3196 8.579850 TTTCAGGATATCAACTGCTGTTTATT 57.420 30.769 6.20 0.00 34.12 1.40
2987 3197 9.679661 TTTCAGGATATCAACTGCTGTTTATTA 57.320 29.630 6.20 0.00 34.12 0.98
3036 3248 3.138884 TCAAGATTGTTACCTGCTGCA 57.861 42.857 0.88 0.88 0.00 4.41
3041 3253 4.338879 AGATTGTTACCTGCTGCATTCTT 58.661 39.130 1.31 0.00 0.00 2.52
3201 3413 8.635765 AAATAGTGGCTCATTTCTTTCTACAA 57.364 30.769 0.00 0.00 0.00 2.41
3612 3824 1.716581 GAACTTGAGCTCGAAGTGACG 59.283 52.381 23.40 7.87 33.85 4.35
3938 4150 2.572104 GGGTTTGGAGGACATACTCAGT 59.428 50.000 0.00 0.00 39.27 3.41
3944 4156 0.324368 AGGACATACTCAGTGGGCGA 60.324 55.000 0.00 0.00 0.00 5.54
4010 4222 3.861276 TTTCAGAATGCATGCAAGAGG 57.139 42.857 26.68 14.87 34.76 3.69
4526 4738 3.066900 CCATTGTAGTAGGAGTCCTGACG 59.933 52.174 22.69 4.88 34.61 4.35
4560 4772 8.206189 TGTATTATCTGCATGACATTCTCTTCA 58.794 33.333 0.00 0.00 0.00 3.02
4572 4784 9.848710 ATGACATTCTCTTCATCAGATTAATGT 57.151 29.630 10.33 10.33 43.83 2.71
4677 4889 5.048643 CAGGTGTATATTACCTCCGTCTCAG 60.049 48.000 8.29 0.00 45.19 3.35
4760 4988 0.544697 ACAAGTAAATCGGGGCGGAT 59.455 50.000 0.00 0.00 0.00 4.18
4947 5175 2.673368 CGGAAGATGTTTAGGTGTGAGC 59.327 50.000 0.00 0.00 0.00 4.26
5028 5256 2.490509 CTGGCACTTCTGATGCATTGAA 59.509 45.455 0.00 8.19 45.27 2.69
5051 5279 2.526432 TCCTCGCAAAAGTAGGAGAGT 58.474 47.619 0.00 0.00 34.46 3.24
5052 5280 3.693807 TCCTCGCAAAAGTAGGAGAGTA 58.306 45.455 0.00 0.00 34.46 2.59
5053 5281 3.442977 TCCTCGCAAAAGTAGGAGAGTAC 59.557 47.826 0.00 0.00 34.46 2.73
5057 5285 4.639310 TCGCAAAAGTAGGAGAGTACTAGG 59.361 45.833 0.00 0.00 32.69 3.02
5067 5295 4.586841 AGGAGAGTACTAGGATCACATTGC 59.413 45.833 0.00 0.00 0.00 3.56
5070 5298 6.463614 GGAGAGTACTAGGATCACATTGCATT 60.464 42.308 0.00 0.00 0.00 3.56
5073 5301 7.831193 AGAGTACTAGGATCACATTGCATTTTT 59.169 33.333 0.00 0.00 0.00 1.94
5132 5360 7.537596 AAACATTTGGATGAAGACAATGGTA 57.462 32.000 0.00 0.00 36.73 3.25
5136 5364 2.509548 TGGATGAAGACAATGGTAGGGG 59.490 50.000 0.00 0.00 0.00 4.79
5137 5365 2.576615 GATGAAGACAATGGTAGGGGC 58.423 52.381 0.00 0.00 0.00 5.80
5146 5374 1.533187 ATGGTAGGGGCATTCATGGA 58.467 50.000 0.00 0.00 0.00 3.41
5147 5375 1.533187 TGGTAGGGGCATTCATGGAT 58.467 50.000 0.00 0.00 0.00 3.41
5175 5403 8.845413 AGATATCAAAATGCTCTAGGATGTTC 57.155 34.615 5.32 0.00 0.00 3.18
5180 5408 3.920231 ATGCTCTAGGATGTTCTGCAA 57.080 42.857 0.00 0.00 32.66 4.08
5183 5411 3.008375 TGCTCTAGGATGTTCTGCAACTT 59.992 43.478 0.00 0.00 33.17 2.66
5215 5444 5.368989 GCTTGCACCTTATATGTTACTCCT 58.631 41.667 0.00 0.00 0.00 3.69
5216 5445 6.522054 GCTTGCACCTTATATGTTACTCCTA 58.478 40.000 0.00 0.00 0.00 2.94
5219 5448 8.771521 TTGCACCTTATATGTTACTCCTACTA 57.228 34.615 0.00 0.00 0.00 1.82
5221 5450 9.021807 TGCACCTTATATGTTACTCCTACTATC 57.978 37.037 0.00 0.00 0.00 2.08
5222 5451 9.245481 GCACCTTATATGTTACTCCTACTATCT 57.755 37.037 0.00 0.00 0.00 1.98
5224 5453 9.669887 ACCTTATATGTTACTCCTACTATCTCG 57.330 37.037 0.00 0.00 0.00 4.04
5225 5454 9.111613 CCTTATATGTTACTCCTACTATCTCGG 57.888 40.741 0.00 0.00 0.00 4.63
5226 5455 9.669887 CTTATATGTTACTCCTACTATCTCGGT 57.330 37.037 0.00 0.00 0.00 4.69
5227 5456 9.664332 TTATATGTTACTCCTACTATCTCGGTC 57.336 37.037 0.00 0.00 0.00 4.79
5228 5457 5.627182 TGTTACTCCTACTATCTCGGTCT 57.373 43.478 0.00 0.00 0.00 3.85
5229 5458 5.609423 TGTTACTCCTACTATCTCGGTCTC 58.391 45.833 0.00 0.00 0.00 3.36
5230 5459 5.129980 TGTTACTCCTACTATCTCGGTCTCA 59.870 44.000 0.00 0.00 0.00 3.27
5245 5474 9.892130 ATCTCGGTCTCAAAATATAAGAAGTTT 57.108 29.630 0.00 0.00 0.00 2.66
5276 5594 9.712305 AGGCTAGTTATTTAATACTGTATGCTG 57.288 33.333 0.22 0.00 0.00 4.41
5277 5595 9.490379 GGCTAGTTATTTAATACTGTATGCTGT 57.510 33.333 0.22 0.00 0.00 4.40
5298 5637 6.480524 TGTATCATCACGAAAAGTTTCTGG 57.519 37.500 0.00 0.00 35.07 3.86
5304 5643 3.621268 TCACGAAAAGTTTCTGGTGTCTG 59.379 43.478 11.20 0.00 33.28 3.51
5305 5644 2.943033 ACGAAAAGTTTCTGGTGTCTGG 59.057 45.455 0.00 0.00 35.07 3.86
5317 5656 1.251251 GTGTCTGGCAGCCAAAGAAT 58.749 50.000 17.03 0.00 30.80 2.40
5326 5665 4.711355 TGGCAGCCAAAGAATATAAAAGCT 59.289 37.500 13.33 0.00 0.00 3.74
5327 5666 5.163519 TGGCAGCCAAAGAATATAAAAGCTC 60.164 40.000 13.33 0.00 0.00 4.09
5329 5668 5.745769 GCAGCCAAAGAATATAAAAGCTCAC 59.254 40.000 0.00 0.00 0.00 3.51
5330 5669 5.967674 CAGCCAAAGAATATAAAAGCTCACG 59.032 40.000 0.00 0.00 0.00 4.35
5331 5670 5.648092 AGCCAAAGAATATAAAAGCTCACGT 59.352 36.000 0.00 0.00 0.00 4.49
5332 5671 6.821665 AGCCAAAGAATATAAAAGCTCACGTA 59.178 34.615 0.00 0.00 0.00 3.57
5333 5672 7.335924 AGCCAAAGAATATAAAAGCTCACGTAA 59.664 33.333 0.00 0.00 0.00 3.18
5334 5673 7.966204 GCCAAAGAATATAAAAGCTCACGTAAA 59.034 33.333 0.00 0.00 0.00 2.01
5401 5740 2.189257 TGCCAACGCACAGTGTCT 59.811 55.556 1.61 0.00 41.12 3.41
5434 5773 5.952347 TCTATATTCTCCACTCGGTGCATAT 59.048 40.000 0.00 0.00 31.99 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.768968 CCCTCAGAAAGAATTTGGACACAT 59.231 41.667 0.00 0.00 39.27 3.21
1 2 4.144297 CCCTCAGAAAGAATTTGGACACA 58.856 43.478 0.00 0.00 39.27 3.72
2 3 4.145052 ACCCTCAGAAAGAATTTGGACAC 58.855 43.478 0.00 0.00 39.27 3.67
3 4 4.141274 TGACCCTCAGAAAGAATTTGGACA 60.141 41.667 0.00 0.00 39.27 4.02
4 5 4.398319 TGACCCTCAGAAAGAATTTGGAC 58.602 43.478 0.00 0.00 39.27 4.02
5 6 4.722526 TGACCCTCAGAAAGAATTTGGA 57.277 40.909 0.00 0.00 39.27 3.53
6 7 4.829492 ACTTGACCCTCAGAAAGAATTTGG 59.171 41.667 0.00 0.00 39.27 3.28
7 8 6.039717 TCAACTTGACCCTCAGAAAGAATTTG 59.960 38.462 0.00 0.00 39.27 2.32
8 9 6.129179 TCAACTTGACCCTCAGAAAGAATTT 58.871 36.000 0.00 0.00 43.98 1.82
9 10 5.694995 TCAACTTGACCCTCAGAAAGAATT 58.305 37.500 0.00 0.00 0.00 2.17
10 11 5.310409 TCAACTTGACCCTCAGAAAGAAT 57.690 39.130 0.00 0.00 0.00 2.40
11 12 4.771114 TCAACTTGACCCTCAGAAAGAA 57.229 40.909 0.00 0.00 0.00 2.52
12 13 4.347876 TGATCAACTTGACCCTCAGAAAGA 59.652 41.667 0.00 0.00 0.00 2.52
13 14 4.453819 GTGATCAACTTGACCCTCAGAAAG 59.546 45.833 0.00 0.00 0.00 2.62
14 15 4.389374 GTGATCAACTTGACCCTCAGAAA 58.611 43.478 0.00 0.00 0.00 2.52
15 16 3.244561 GGTGATCAACTTGACCCTCAGAA 60.245 47.826 2.64 0.00 0.00 3.02
16 17 2.303022 GGTGATCAACTTGACCCTCAGA 59.697 50.000 2.64 0.00 0.00 3.27
17 18 2.304180 AGGTGATCAACTTGACCCTCAG 59.696 50.000 7.68 0.00 0.00 3.35
18 19 2.303022 GAGGTGATCAACTTGACCCTCA 59.697 50.000 15.99 8.50 37.53 3.86
19 20 2.569404 AGAGGTGATCAACTTGACCCTC 59.431 50.000 15.99 15.52 37.79 4.30
20 21 2.625639 AGAGGTGATCAACTTGACCCT 58.374 47.619 15.99 6.60 0.00 4.34
21 22 3.260884 TGTAGAGGTGATCAACTTGACCC 59.739 47.826 15.99 1.02 0.00 4.46
22 23 4.246458 GTGTAGAGGTGATCAACTTGACC 58.754 47.826 15.99 1.44 0.00 4.02
23 24 4.883083 TGTGTAGAGGTGATCAACTTGAC 58.117 43.478 15.99 15.76 0.00 3.18
24 25 5.545063 TTGTGTAGAGGTGATCAACTTGA 57.455 39.130 15.99 2.84 0.00 3.02
25 26 6.618287 TTTTGTGTAGAGGTGATCAACTTG 57.382 37.500 15.99 0.00 0.00 3.16
53 54 8.999431 ACAGTGTAAATGAATTTAGATTGTCGT 58.001 29.630 12.42 0.00 40.11 4.34
54 55 9.825972 AACAGTGTAAATGAATTTAGATTGTCG 57.174 29.630 16.25 0.00 41.86 4.35
56 57 9.825972 CGAACAGTGTAAATGAATTTAGATTGT 57.174 29.630 12.42 12.42 43.32 2.71
57 58 9.825972 ACGAACAGTGTAAATGAATTTAGATTG 57.174 29.630 11.48 11.48 38.40 2.67
59 60 9.825972 CAACGAACAGTGTAAATGAATTTAGAT 57.174 29.630 0.00 0.00 34.17 1.98
60 61 9.047371 TCAACGAACAGTGTAAATGAATTTAGA 57.953 29.630 0.00 0.00 34.17 2.10
61 62 9.825972 ATCAACGAACAGTGTAAATGAATTTAG 57.174 29.630 0.00 0.00 34.17 1.85
64 65 9.825972 CTAATCAACGAACAGTGTAAATGAATT 57.174 29.630 0.00 0.00 34.17 2.17
65 66 8.450964 CCTAATCAACGAACAGTGTAAATGAAT 58.549 33.333 0.00 0.00 34.17 2.57
66 67 7.442969 ACCTAATCAACGAACAGTGTAAATGAA 59.557 33.333 0.00 0.00 34.17 2.57
67 68 6.932400 ACCTAATCAACGAACAGTGTAAATGA 59.068 34.615 0.00 0.00 34.17 2.57
68 69 7.015289 CACCTAATCAACGAACAGTGTAAATG 58.985 38.462 0.00 0.00 38.30 2.32
69 70 6.148811 CCACCTAATCAACGAACAGTGTAAAT 59.851 38.462 0.00 0.00 0.00 1.40
70 71 5.467399 CCACCTAATCAACGAACAGTGTAAA 59.533 40.000 0.00 0.00 0.00 2.01
71 72 4.992319 CCACCTAATCAACGAACAGTGTAA 59.008 41.667 0.00 0.00 0.00 2.41
72 73 4.562082 CCACCTAATCAACGAACAGTGTA 58.438 43.478 0.00 0.00 0.00 2.90
73 74 3.399330 CCACCTAATCAACGAACAGTGT 58.601 45.455 0.00 0.00 0.00 3.55
74 75 2.159627 GCCACCTAATCAACGAACAGTG 59.840 50.000 0.00 0.00 0.00 3.66
75 76 2.224426 TGCCACCTAATCAACGAACAGT 60.224 45.455 0.00 0.00 0.00 3.55
76 77 2.159627 GTGCCACCTAATCAACGAACAG 59.840 50.000 0.00 0.00 0.00 3.16
77 78 2.147958 GTGCCACCTAATCAACGAACA 58.852 47.619 0.00 0.00 0.00 3.18
78 79 1.467342 GGTGCCACCTAATCAACGAAC 59.533 52.381 6.63 0.00 34.73 3.95
79 80 1.612199 GGGTGCCACCTAATCAACGAA 60.612 52.381 14.71 0.00 38.64 3.85
80 81 0.035820 GGGTGCCACCTAATCAACGA 60.036 55.000 14.71 0.00 38.64 3.85
81 82 0.322098 TGGGTGCCACCTAATCAACG 60.322 55.000 14.71 0.00 38.64 4.10
82 83 3.662290 TGGGTGCCACCTAATCAAC 57.338 52.632 14.71 0.00 38.64 3.18
92 93 1.454847 GACAAACTGGTGGGTGCCA 60.455 57.895 0.00 0.00 36.97 4.92
93 94 1.454847 TGACAAACTGGTGGGTGCC 60.455 57.895 0.00 0.00 0.00 5.01
94 95 1.733526 GTGACAAACTGGTGGGTGC 59.266 57.895 0.00 0.00 0.00 5.01
95 96 1.444119 CGGTGACAAACTGGTGGGTG 61.444 60.000 0.00 0.00 0.00 4.61
96 97 1.153046 CGGTGACAAACTGGTGGGT 60.153 57.895 0.00 0.00 0.00 4.51
97 98 0.107081 TACGGTGACAAACTGGTGGG 59.893 55.000 0.00 0.00 39.74 4.61
98 99 1.202604 ACTACGGTGACAAACTGGTGG 60.203 52.381 0.00 0.00 39.74 4.61
99 100 2.234300 ACTACGGTGACAAACTGGTG 57.766 50.000 0.00 0.00 39.74 4.17
100 101 2.168936 TGAACTACGGTGACAAACTGGT 59.831 45.455 0.00 0.00 39.74 4.00
101 102 2.542595 GTGAACTACGGTGACAAACTGG 59.457 50.000 0.00 0.00 39.74 4.00
102 103 2.542595 GGTGAACTACGGTGACAAACTG 59.457 50.000 0.00 0.00 41.37 3.16
103 104 2.168936 TGGTGAACTACGGTGACAAACT 59.831 45.455 0.00 0.00 0.00 2.66
104 105 2.542595 CTGGTGAACTACGGTGACAAAC 59.457 50.000 0.00 0.00 0.00 2.93
105 106 2.828877 CTGGTGAACTACGGTGACAAA 58.171 47.619 0.00 0.00 0.00 2.83
106 107 1.539496 GCTGGTGAACTACGGTGACAA 60.539 52.381 0.00 0.00 0.00 3.18
107 108 0.032952 GCTGGTGAACTACGGTGACA 59.967 55.000 0.00 0.00 0.00 3.58
108 109 0.317479 AGCTGGTGAACTACGGTGAC 59.683 55.000 0.00 0.00 0.00 3.67
109 110 1.045407 AAGCTGGTGAACTACGGTGA 58.955 50.000 0.00 0.00 0.00 4.02
110 111 1.878953 AAAGCTGGTGAACTACGGTG 58.121 50.000 0.00 0.00 0.00 4.94
111 112 2.632987 AAAAGCTGGTGAACTACGGT 57.367 45.000 0.00 0.00 0.00 4.83
112 113 3.181510 GCATAAAAGCTGGTGAACTACGG 60.182 47.826 0.00 0.00 0.00 4.02
113 114 3.435327 TGCATAAAAGCTGGTGAACTACG 59.565 43.478 0.00 0.00 34.99 3.51
114 115 5.567138 ATGCATAAAAGCTGGTGAACTAC 57.433 39.130 0.00 0.00 34.99 2.73
115 116 7.880160 AATATGCATAAAAGCTGGTGAACTA 57.120 32.000 11.13 0.00 34.99 2.24
116 117 6.780457 AATATGCATAAAAGCTGGTGAACT 57.220 33.333 11.13 0.00 34.99 3.01
117 118 8.925161 TTAAATATGCATAAAAGCTGGTGAAC 57.075 30.769 11.13 0.00 34.99 3.18
141 142 9.416284 TGTAGAAAAGACCCTCAACTTTTATTT 57.584 29.630 0.00 0.00 43.36 1.40
142 143 8.990163 TGTAGAAAAGACCCTCAACTTTTATT 57.010 30.769 0.00 0.00 43.36 1.40
143 144 8.990163 TTGTAGAAAAGACCCTCAACTTTTAT 57.010 30.769 0.00 0.00 43.36 1.40
144 145 8.810990 TTTGTAGAAAAGACCCTCAACTTTTA 57.189 30.769 0.00 0.00 43.36 1.52
145 146 7.712204 TTTGTAGAAAAGACCCTCAACTTTT 57.288 32.000 0.00 0.00 45.11 2.27
146 147 7.712204 TTTTGTAGAAAAGACCCTCAACTTT 57.288 32.000 0.00 0.00 37.85 2.66
147 148 7.712204 TTTTTGTAGAAAAGACCCTCAACTT 57.288 32.000 0.00 0.00 32.62 2.66
168 169 3.367087 GCTGAGCTGTGCATGATCTTTTT 60.367 43.478 0.00 0.00 0.00 1.94
169 170 2.163815 GCTGAGCTGTGCATGATCTTTT 59.836 45.455 0.00 0.00 0.00 2.27
170 171 1.743958 GCTGAGCTGTGCATGATCTTT 59.256 47.619 0.00 0.00 0.00 2.52
171 172 1.380524 GCTGAGCTGTGCATGATCTT 58.619 50.000 0.00 0.00 0.00 2.40
172 173 0.464013 GGCTGAGCTGTGCATGATCT 60.464 55.000 3.72 0.00 0.00 2.75
173 174 0.746923 TGGCTGAGCTGTGCATGATC 60.747 55.000 3.72 0.00 0.00 2.92
174 175 0.323087 TTGGCTGAGCTGTGCATGAT 60.323 50.000 3.72 0.00 0.00 2.45
175 176 1.073548 TTGGCTGAGCTGTGCATGA 59.926 52.632 3.72 0.00 0.00 3.07
176 177 1.211969 GTTGGCTGAGCTGTGCATG 59.788 57.895 3.72 0.00 0.00 4.06
177 178 2.330372 CGTTGGCTGAGCTGTGCAT 61.330 57.895 3.72 0.00 0.00 3.96
178 179 2.974148 CGTTGGCTGAGCTGTGCA 60.974 61.111 3.72 0.00 0.00 4.57
179 180 4.395583 GCGTTGGCTGAGCTGTGC 62.396 66.667 3.72 0.00 35.83 4.57
180 181 3.730761 GGCGTTGGCTGAGCTGTG 61.731 66.667 3.72 0.00 39.81 3.66
181 182 3.890936 GAGGCGTTGGCTGAGCTGT 62.891 63.158 3.72 0.00 38.98 4.40
182 183 3.123620 GAGGCGTTGGCTGAGCTG 61.124 66.667 3.72 0.00 38.98 4.24
183 184 4.400961 GGAGGCGTTGGCTGAGCT 62.401 66.667 3.72 0.00 38.98 4.09
185 186 3.710722 AGGGAGGCGTTGGCTGAG 61.711 66.667 0.00 0.00 38.98 3.35
186 187 4.020617 CAGGGAGGCGTTGGCTGA 62.021 66.667 0.00 0.00 38.98 4.26
190 191 4.785453 GGAGCAGGGAGGCGTTGG 62.785 72.222 0.00 0.00 39.27 3.77
191 192 4.785453 GGGAGCAGGGAGGCGTTG 62.785 72.222 0.00 0.00 39.27 4.10
195 196 3.791586 GACAGGGAGCAGGGAGGC 61.792 72.222 0.00 0.00 0.00 4.70
196 197 3.465403 CGACAGGGAGCAGGGAGG 61.465 72.222 0.00 0.00 0.00 4.30
197 198 2.286523 AACGACAGGGAGCAGGGAG 61.287 63.158 0.00 0.00 0.00 4.30
198 199 2.203788 AACGACAGGGAGCAGGGA 60.204 61.111 0.00 0.00 0.00 4.20
199 200 2.046892 CAACGACAGGGAGCAGGG 60.047 66.667 0.00 0.00 0.00 4.45
200 201 1.374758 GTCAACGACAGGGAGCAGG 60.375 63.158 0.00 0.00 32.09 4.85
201 202 0.036952 ATGTCAACGACAGGGAGCAG 60.037 55.000 2.95 0.00 46.04 4.24
202 203 0.320683 CATGTCAACGACAGGGAGCA 60.321 55.000 2.95 0.00 46.04 4.26
203 204 0.320771 ACATGTCAACGACAGGGAGC 60.321 55.000 12.74 0.00 46.67 4.70
204 205 1.432514 CACATGTCAACGACAGGGAG 58.567 55.000 12.74 2.23 46.67 4.30
205 206 0.034756 CCACATGTCAACGACAGGGA 59.965 55.000 12.74 0.00 46.67 4.20
206 207 0.955428 CCCACATGTCAACGACAGGG 60.955 60.000 12.74 9.11 46.67 4.45
207 208 1.577328 GCCCACATGTCAACGACAGG 61.577 60.000 7.19 7.19 46.04 4.00
208 209 1.577328 GGCCCACATGTCAACGACAG 61.577 60.000 0.00 0.00 46.04 3.51
209 210 1.599518 GGCCCACATGTCAACGACA 60.600 57.895 0.00 0.00 46.90 4.35
210 211 2.332654 GGGCCCACATGTCAACGAC 61.333 63.158 19.95 0.00 0.00 4.34
211 212 2.033448 GGGCCCACATGTCAACGA 59.967 61.111 19.95 0.00 0.00 3.85
212 213 1.603455 AAGGGCCCACATGTCAACG 60.603 57.895 27.56 0.00 0.00 4.10
213 214 1.966762 CAAGGGCCCACATGTCAAC 59.033 57.895 27.56 0.00 0.00 3.18
214 215 1.907807 GCAAGGGCCCACATGTCAA 60.908 57.895 27.56 0.00 0.00 3.18
215 216 2.283101 GCAAGGGCCCACATGTCA 60.283 61.111 27.56 0.00 0.00 3.58
238 239 3.572447 CTCCATGTGTGGCAGGCCA 62.572 63.158 9.35 9.35 45.63 5.36
239 240 2.753043 CTCCATGTGTGGCAGGCC 60.753 66.667 2.62 2.62 45.63 5.19
240 241 3.446570 GCTCCATGTGTGGCAGGC 61.447 66.667 0.00 0.00 45.63 4.85
241 242 3.129502 CGCTCCATGTGTGGCAGG 61.130 66.667 0.00 0.00 45.63 4.85
242 243 2.881539 ATCCGCTCCATGTGTGGCAG 62.882 60.000 9.80 0.00 45.63 4.85
243 244 1.621672 TATCCGCTCCATGTGTGGCA 61.622 55.000 9.80 0.00 45.63 4.92
244 245 1.146041 TATCCGCTCCATGTGTGGC 59.854 57.895 9.80 0.00 45.63 5.01
246 247 1.290203 GTGTATCCGCTCCATGTGTG 58.710 55.000 0.00 0.00 0.00 3.82
247 248 0.178068 GGTGTATCCGCTCCATGTGT 59.822 55.000 0.00 0.00 0.00 3.72
248 249 0.532862 GGGTGTATCCGCTCCATGTG 60.533 60.000 0.00 0.00 37.00 3.21
249 250 1.830145 GGGTGTATCCGCTCCATGT 59.170 57.895 0.00 0.00 37.00 3.21
250 251 1.300931 CGGGTGTATCCGCTCCATG 60.301 63.158 0.00 0.00 43.71 3.66
251 252 3.138625 CGGGTGTATCCGCTCCAT 58.861 61.111 0.00 0.00 43.71 3.41
258 259 1.066918 CCTGTACGCGGGTGTATCC 59.933 63.158 16.34 0.00 36.39 2.59
259 260 0.457035 TTCCTGTACGCGGGTGTATC 59.543 55.000 16.34 3.93 41.89 2.24
260 261 1.117150 ATTCCTGTACGCGGGTGTAT 58.883 50.000 16.34 0.00 41.89 2.29
261 262 0.896923 AATTCCTGTACGCGGGTGTA 59.103 50.000 16.34 2.91 41.89 2.90
262 263 0.672401 CAATTCCTGTACGCGGGTGT 60.672 55.000 16.34 0.00 41.89 4.16
263 264 1.366111 CCAATTCCTGTACGCGGGTG 61.366 60.000 16.34 0.00 41.89 4.61
264 265 1.078708 CCAATTCCTGTACGCGGGT 60.079 57.895 12.47 10.91 41.89 5.28
265 266 1.817941 CCCAATTCCTGTACGCGGG 60.818 63.158 12.47 0.89 42.59 6.13
266 267 1.087771 GTCCCAATTCCTGTACGCGG 61.088 60.000 12.47 0.00 0.00 6.46
267 268 1.087771 GGTCCCAATTCCTGTACGCG 61.088 60.000 3.53 3.53 0.00 6.01
268 269 1.087771 CGGTCCCAATTCCTGTACGC 61.088 60.000 0.00 0.00 0.00 4.42
269 270 0.248289 ACGGTCCCAATTCCTGTACG 59.752 55.000 0.00 0.00 0.00 3.67
270 271 3.832615 ATACGGTCCCAATTCCTGTAC 57.167 47.619 0.00 0.00 0.00 2.90
271 272 4.519213 CAAATACGGTCCCAATTCCTGTA 58.481 43.478 0.00 0.00 0.00 2.74
272 273 3.352648 CAAATACGGTCCCAATTCCTGT 58.647 45.455 0.00 0.00 0.00 4.00
273 274 2.099098 GCAAATACGGTCCCAATTCCTG 59.901 50.000 0.00 0.00 0.00 3.86
274 275 2.291282 TGCAAATACGGTCCCAATTCCT 60.291 45.455 0.00 0.00 0.00 3.36
275 276 2.096248 TGCAAATACGGTCCCAATTCC 58.904 47.619 0.00 0.00 0.00 3.01
276 277 2.477189 CGTGCAAATACGGTCCCAATTC 60.477 50.000 0.00 0.00 40.22 2.17
277 278 1.470890 CGTGCAAATACGGTCCCAATT 59.529 47.619 0.00 0.00 40.22 2.32
278 279 1.091537 CGTGCAAATACGGTCCCAAT 58.908 50.000 0.00 0.00 40.22 3.16
279 280 1.579084 GCGTGCAAATACGGTCCCAA 61.579 55.000 0.00 0.00 43.87 4.12
280 281 2.036006 GCGTGCAAATACGGTCCCA 61.036 57.895 0.00 0.00 43.87 4.37
281 282 2.757056 GGCGTGCAAATACGGTCCC 61.757 63.158 0.00 0.00 43.87 4.46
282 283 2.757056 GGGCGTGCAAATACGGTCC 61.757 63.158 0.00 0.00 43.87 4.46
283 284 1.702491 GAGGGCGTGCAAATACGGTC 61.702 60.000 0.00 0.00 43.87 4.79
284 285 1.743995 GAGGGCGTGCAAATACGGT 60.744 57.895 0.00 0.00 43.87 4.83
285 286 2.808958 CGAGGGCGTGCAAATACGG 61.809 63.158 0.00 0.00 43.87 4.02
286 287 2.701006 CGAGGGCGTGCAAATACG 59.299 61.111 0.00 0.00 46.28 3.06
287 288 2.395360 TGCGAGGGCGTGCAAATAC 61.395 57.895 0.00 0.00 44.10 1.89
288 289 2.046796 TGCGAGGGCGTGCAAATA 60.047 55.556 0.00 0.00 44.10 1.40
292 293 4.927782 AACTTGCGAGGGCGTGCA 62.928 61.111 5.79 0.00 44.10 4.57
293 294 3.660111 AAACTTGCGAGGGCGTGC 61.660 61.111 5.79 0.00 44.10 5.34
294 295 1.577328 ATCAAACTTGCGAGGGCGTG 61.577 55.000 5.79 0.00 44.10 5.34
295 296 1.302511 ATCAAACTTGCGAGGGCGT 60.303 52.632 5.79 0.00 44.10 5.68
296 297 1.135315 CATCAAACTTGCGAGGGCG 59.865 57.895 5.79 0.00 44.10 6.13
297 298 0.169009 GTCATCAAACTTGCGAGGGC 59.831 55.000 5.79 0.00 40.52 5.19
298 299 1.466167 CAGTCATCAAACTTGCGAGGG 59.534 52.381 5.79 0.00 0.00 4.30
299 300 2.416747 TCAGTCATCAAACTTGCGAGG 58.583 47.619 5.79 0.00 0.00 4.63
300 301 4.472691 TTTCAGTCATCAAACTTGCGAG 57.527 40.909 0.00 0.00 0.00 5.03
301 302 4.514816 TGATTTCAGTCATCAAACTTGCGA 59.485 37.500 0.00 0.00 0.00 5.10
302 303 4.614284 GTGATTTCAGTCATCAAACTTGCG 59.386 41.667 0.00 0.00 32.37 4.85
303 304 4.614284 CGTGATTTCAGTCATCAAACTTGC 59.386 41.667 0.00 0.00 32.37 4.01
304 305 5.751680 ACGTGATTTCAGTCATCAAACTTG 58.248 37.500 0.00 0.00 32.37 3.16
305 306 7.672983 ATACGTGATTTCAGTCATCAAACTT 57.327 32.000 0.00 0.00 32.37 2.66
306 307 7.672983 AATACGTGATTTCAGTCATCAAACT 57.327 32.000 0.00 0.00 32.37 2.66
309 310 9.810545 TGTATAATACGTGATTTCAGTCATCAA 57.189 29.630 0.00 0.00 32.37 2.57
310 311 9.810545 TTGTATAATACGTGATTTCAGTCATCA 57.189 29.630 0.00 0.00 0.00 3.07
312 313 9.817809 ACTTGTATAATACGTGATTTCAGTCAT 57.182 29.630 0.00 0.00 0.00 3.06
313 314 9.647797 AACTTGTATAATACGTGATTTCAGTCA 57.352 29.630 0.00 0.00 0.00 3.41
318 319 8.995906 GCACAAACTTGTATAATACGTGATTTC 58.004 33.333 0.00 0.00 39.91 2.17
319 320 8.508062 TGCACAAACTTGTATAATACGTGATTT 58.492 29.630 0.00 0.00 39.91 2.17
320 321 8.035165 TGCACAAACTTGTATAATACGTGATT 57.965 30.769 0.00 0.00 39.91 2.57
321 322 7.603963 TGCACAAACTTGTATAATACGTGAT 57.396 32.000 0.00 0.00 39.91 3.06
322 323 7.332182 TGATGCACAAACTTGTATAATACGTGA 59.668 33.333 0.00 0.00 39.91 4.35
323 324 7.460296 TGATGCACAAACTTGTATAATACGTG 58.540 34.615 0.00 0.00 39.91 4.49
324 325 7.603963 TGATGCACAAACTTGTATAATACGT 57.396 32.000 0.00 0.00 39.91 3.57
325 326 8.888332 TTTGATGCACAAACTTGTATAATACG 57.112 30.769 9.46 0.00 42.57 3.06
338 339 3.563390 TGACGATCAGTTTGATGCACAAA 59.437 39.130 9.46 9.46 44.79 2.83
339 340 3.058983 GTGACGATCAGTTTGATGCACAA 60.059 43.478 0.00 0.00 37.20 3.33
340 341 2.480037 GTGACGATCAGTTTGATGCACA 59.520 45.455 0.00 0.00 37.20 4.57
341 342 2.472886 CGTGACGATCAGTTTGATGCAC 60.473 50.000 0.00 2.30 37.20 4.57
342 343 1.726248 CGTGACGATCAGTTTGATGCA 59.274 47.619 0.00 0.00 37.20 3.96
343 344 1.527793 GCGTGACGATCAGTTTGATGC 60.528 52.381 10.10 0.00 37.20 3.91
344 345 2.425989 GCGTGACGATCAGTTTGATG 57.574 50.000 10.10 0.00 37.20 3.07
357 358 1.124477 GTCTTAGAACTTGCGCGTGAC 59.876 52.381 8.43 0.00 0.00 3.67
358 359 1.000607 AGTCTTAGAACTTGCGCGTGA 60.001 47.619 8.43 0.00 0.00 4.35
359 360 1.419374 AGTCTTAGAACTTGCGCGTG 58.581 50.000 8.43 0.00 0.00 5.34
360 361 2.030540 TGTAGTCTTAGAACTTGCGCGT 60.031 45.455 8.43 0.00 0.00 6.01
361 362 2.592194 TGTAGTCTTAGAACTTGCGCG 58.408 47.619 0.00 0.00 0.00 6.86
362 363 2.924290 CCTGTAGTCTTAGAACTTGCGC 59.076 50.000 0.00 0.00 0.00 6.09
363 364 3.921021 CACCTGTAGTCTTAGAACTTGCG 59.079 47.826 0.00 0.00 0.00 4.85
364 365 4.884247 ACACCTGTAGTCTTAGAACTTGC 58.116 43.478 0.00 0.00 0.00 4.01
367 368 8.747471 GGTAAATACACCTGTAGTCTTAGAACT 58.253 37.037 0.00 0.00 35.55 3.01
368 369 8.923609 GGTAAATACACCTGTAGTCTTAGAAC 57.076 38.462 0.00 0.00 35.55 3.01
384 385 9.609346 GCCACTTCTTTATTAGAGGTAAATACA 57.391 33.333 0.00 0.00 40.89 2.29
385 386 9.609346 TGCCACTTCTTTATTAGAGGTAAATAC 57.391 33.333 0.00 0.00 40.89 1.89
387 388 8.957466 GTTGCCACTTCTTTATTAGAGGTAAAT 58.043 33.333 0.00 0.00 40.89 1.40
388 389 7.118680 CGTTGCCACTTCTTTATTAGAGGTAAA 59.881 37.037 0.00 0.00 40.89 2.01
389 390 6.592607 CGTTGCCACTTCTTTATTAGAGGTAA 59.407 38.462 0.00 0.00 40.89 2.85
390 391 6.103997 CGTTGCCACTTCTTTATTAGAGGTA 58.896 40.000 0.00 0.00 40.89 3.08
391 392 4.935808 CGTTGCCACTTCTTTATTAGAGGT 59.064 41.667 0.00 0.00 43.38 3.85
392 393 4.332819 CCGTTGCCACTTCTTTATTAGAGG 59.667 45.833 0.00 0.00 36.12 3.69
393 394 4.201822 GCCGTTGCCACTTCTTTATTAGAG 60.202 45.833 0.00 0.00 33.51 2.43
394 395 3.687698 GCCGTTGCCACTTCTTTATTAGA 59.312 43.478 0.00 0.00 0.00 2.10
395 396 3.438781 TGCCGTTGCCACTTCTTTATTAG 59.561 43.478 0.00 0.00 36.33 1.73
396 397 3.189702 GTGCCGTTGCCACTTCTTTATTA 59.810 43.478 0.00 0.00 36.33 0.98
397 398 2.030274 GTGCCGTTGCCACTTCTTTATT 60.030 45.455 0.00 0.00 36.33 1.40
398 399 1.539827 GTGCCGTTGCCACTTCTTTAT 59.460 47.619 0.00 0.00 36.33 1.40
445 446 8.614346 TGTAACTACGGCCAATAAAATGTATTC 58.386 33.333 2.24 0.00 0.00 1.75
500 501 0.034670 ACTGATTTGCCCTGGCTCTC 60.035 55.000 9.97 4.27 42.51 3.20
517 518 5.713861 AGTACGTACTAGGGTTGATTTGACT 59.286 40.000 26.36 0.00 34.13 3.41
533 534 2.535732 CGTAAGCGGAGACAGTACGTAC 60.536 54.545 18.10 18.10 34.36 3.67
534 535 1.660607 CGTAAGCGGAGACAGTACGTA 59.339 52.381 0.00 0.00 34.36 3.57
535 536 0.445436 CGTAAGCGGAGACAGTACGT 59.555 55.000 0.00 0.00 34.36 3.57
536 537 0.445436 ACGTAAGCGGAGACAGTACG 59.555 55.000 0.00 0.00 43.45 3.67
539 540 2.734492 GCAATACGTAAGCGGAGACAGT 60.734 50.000 0.00 0.00 43.45 3.55
607 608 3.606662 AGTCAGTCGCGTGGCACT 61.607 61.111 16.72 0.00 0.00 4.40
654 667 1.425428 GCAATGCCAGTAGTGACGC 59.575 57.895 0.00 0.00 0.00 5.19
725 740 3.529319 AGGAGCAAGGGATTTAAGGACAT 59.471 43.478 0.00 0.00 0.00 3.06
870 885 2.844348 ACAACCCGGACCAGAAATCTAT 59.156 45.455 0.73 0.00 0.00 1.98
872 887 1.064825 ACAACCCGGACCAGAAATCT 58.935 50.000 0.73 0.00 0.00 2.40
895 910 3.467803 ACGAAAAGACTCACCTTTCCTG 58.532 45.455 0.00 0.00 35.50 3.86
896 911 3.840124 ACGAAAAGACTCACCTTTCCT 57.160 42.857 0.00 0.00 35.50 3.36
897 912 3.250280 GGAACGAAAAGACTCACCTTTCC 59.750 47.826 0.00 0.00 35.50 3.13
898 913 4.127907 AGGAACGAAAAGACTCACCTTTC 58.872 43.478 0.00 0.00 35.50 2.62
927 942 9.471702 AAATCAGTAAGATTGGAGTGAAATCAT 57.528 29.630 0.00 0.00 46.09 2.45
947 964 3.698040 CAGGATTTGAGGTGGGAAATCAG 59.302 47.826 0.00 0.00 39.40 2.90
948 965 3.700538 CAGGATTTGAGGTGGGAAATCA 58.299 45.455 0.00 0.00 39.40 2.57
953 970 1.139498 TGGCAGGATTTGAGGTGGGA 61.139 55.000 0.00 0.00 0.00 4.37
957 974 1.004044 CAGACTGGCAGGATTTGAGGT 59.996 52.381 20.34 0.00 0.00 3.85
978 995 3.555966 TGTCGGATCAGAGATTCAGCTA 58.444 45.455 0.00 0.00 0.00 3.32
1248 1269 2.829120 GAGGTCCTTGAGCTTGTAGTCT 59.171 50.000 0.00 0.00 40.67 3.24
1294 1315 2.437359 GCGGTGCTTGCTGGAGAT 60.437 61.111 0.00 0.00 0.00 2.75
1368 1389 4.697756 TCCTGCGCAAAGGACGGG 62.698 66.667 13.05 7.50 41.60 5.28
1410 1431 2.439156 GCAGATGGAGTGGCACCC 60.439 66.667 15.27 15.50 0.00 4.61
1420 1441 0.666913 GCATTAGCAGTGGCAGATGG 59.333 55.000 0.00 0.00 44.61 3.51
1447 1468 2.892852 CAATGGCCTTTCCTTTGTCAGA 59.107 45.455 3.32 0.00 42.15 3.27
1465 1486 3.453916 TGGTGTGACCATTGGCAAT 57.546 47.368 6.96 6.96 44.79 3.56
1495 1516 1.153168 CCTTATCCACTGCCACGGG 60.153 63.158 0.00 0.00 0.00 5.28
1497 1518 0.462047 GTCCCTTATCCACTGCCACG 60.462 60.000 0.00 0.00 0.00 4.94
1507 1528 1.580059 TCCTGTGGTGGTCCCTTATC 58.420 55.000 0.00 0.00 0.00 1.75
1508 1529 1.846439 CATCCTGTGGTGGTCCCTTAT 59.154 52.381 0.00 0.00 0.00 1.73
1510 1531 1.500783 CCATCCTGTGGTGGTCCCTT 61.501 60.000 0.00 0.00 43.44 3.95
1595 1616 1.020437 GGCCACTCTATCTGCAAAGC 58.980 55.000 0.00 0.00 0.00 3.51
1758 1779 0.181350 CCTCCCATTCCTTCTTCCCG 59.819 60.000 0.00 0.00 0.00 5.14
1780 1801 1.451504 CACCTCCACAACTGCTCCA 59.548 57.895 0.00 0.00 0.00 3.86
1809 1830 2.493675 CTCACCATTCTCGTTCTCCTCA 59.506 50.000 0.00 0.00 0.00 3.86
1877 1898 2.644151 AGTATCTTCCCACCAAACCCT 58.356 47.619 0.00 0.00 0.00 4.34
2030 2051 4.460382 TGGAGAATTCTGTTGCATTCTTCC 59.540 41.667 14.00 3.89 39.41 3.46
2205 2226 6.599356 TCAGTAACATTAGTAGCCAAGTGA 57.401 37.500 0.00 0.00 0.00 3.41
2295 2503 8.689972 GGATCTTAACATTCAGTTGGAAATGAT 58.310 33.333 2.36 0.00 41.50 2.45
2296 2504 7.122650 GGGATCTTAACATTCAGTTGGAAATGA 59.877 37.037 2.36 0.00 41.50 2.57
2297 2505 7.123247 AGGGATCTTAACATTCAGTTGGAAATG 59.877 37.037 0.00 0.00 41.50 2.32
2298 2506 7.123247 CAGGGATCTTAACATTCAGTTGGAAAT 59.877 37.037 0.00 0.00 41.50 2.17
2301 2509 5.250543 TCAGGGATCTTAACATTCAGTTGGA 59.749 40.000 0.00 0.00 41.50 3.53
2302 2510 5.500234 TCAGGGATCTTAACATTCAGTTGG 58.500 41.667 0.00 0.00 41.50 3.77
2303 2511 7.337689 TCATTCAGGGATCTTAACATTCAGTTG 59.662 37.037 0.00 0.00 41.50 3.16
2402 2612 0.610174 CTGGTTCTGCACTCCTGCTA 59.390 55.000 0.00 0.00 44.57 3.49
2446 2656 8.070171 ACAAGAGACAAACGAAGAAATTACATG 58.930 33.333 0.00 0.00 0.00 3.21
2460 2670 6.119144 TGTTAAAGCAGACAAGAGACAAAC 57.881 37.500 0.00 0.00 0.00 2.93
2884 3094 8.651589 AGTCGATGTCCTGAATATTCCTAATA 57.348 34.615 12.90 0.00 0.00 0.98
2987 3197 9.598517 TCATTTTGAAGTTAGCAACTCAAAAAT 57.401 25.926 22.91 20.22 43.32 1.82
3102 3314 6.539464 ACAAGTAACAGATACCGTGTCAAAAA 59.461 34.615 0.00 0.00 34.89 1.94
3111 3323 7.878477 TTAGACAAACAAGTAACAGATACCG 57.122 36.000 0.00 0.00 34.89 4.02
3144 3356 9.297586 GCCCATAAACTAAAAGCTAAACAATAC 57.702 33.333 0.00 0.00 0.00 1.89
3612 3824 0.099436 GGAGTGTGCCATTCAATCGC 59.901 55.000 1.38 0.00 31.85 4.58
3938 4150 1.038681 TACCGATAGCTGTTCGCCCA 61.039 55.000 13.62 0.97 40.39 5.36
3944 4156 5.353394 TCCTTTTGATACCGATAGCTGTT 57.647 39.130 0.00 0.00 0.00 3.16
4526 4738 5.237344 GTCATGCAGATAATACAACTCCCAC 59.763 44.000 0.00 0.00 0.00 4.61
4560 4772 8.408043 TCTGGAACAAACAACATTAATCTGAT 57.592 30.769 1.85 0.00 38.70 2.90
4572 4784 4.946772 TCATGTCAGTTCTGGAACAAACAA 59.053 37.500 17.89 6.72 43.47 2.83
4677 4889 6.317391 AGCAGCCAAATCTAAGACAAGTAATC 59.683 38.462 0.00 0.00 0.00 1.75
4749 4977 0.836400 AATACTCCATCCGCCCCGAT 60.836 55.000 0.00 0.00 0.00 4.18
4947 5175 6.258068 ACTTGTTTTCAGTACCTTCTCTTTCG 59.742 38.462 0.00 0.00 0.00 3.46
5028 5256 4.020128 ACTCTCCTACTTTTGCGAGGAATT 60.020 41.667 0.00 0.00 38.90 2.17
5107 5335 6.829849 ACCATTGTCTTCATCCAAATGTTTT 58.170 32.000 0.00 0.00 34.32 2.43
5132 5360 2.995746 TCTAGATCCATGAATGCCCCT 58.004 47.619 0.00 0.00 0.00 4.79
5147 5375 9.319060 ACATCCTAGAGCATTTTGATATCTAGA 57.681 33.333 3.98 0.00 41.19 2.43
5191 5419 4.211374 GGAGTAACATATAAGGTGCAAGCG 59.789 45.833 0.00 0.00 40.95 4.68
5193 5421 7.727181 AGTAGGAGTAACATATAAGGTGCAAG 58.273 38.462 0.00 0.00 0.00 4.01
5219 5448 9.892130 AAACTTCTTATATTTTGAGACCGAGAT 57.108 29.630 0.00 0.00 0.00 2.75
5250 5479 9.712305 CAGCATACAGTATTAAATAACTAGCCT 57.288 33.333 0.00 0.00 0.00 4.58
5251 5480 9.490379 ACAGCATACAGTATTAAATAACTAGCC 57.510 33.333 0.00 0.00 0.00 3.93
5273 5591 6.017933 CAGAAACTTTTCGTGATGATACAGC 58.982 40.000 0.00 0.00 41.92 4.40
5274 5592 6.147821 ACCAGAAACTTTTCGTGATGATACAG 59.852 38.462 0.00 0.00 41.92 2.74
5276 5594 6.073222 ACACCAGAAACTTTTCGTGATGATAC 60.073 38.462 13.45 0.00 41.92 2.24
5277 5595 5.995282 ACACCAGAAACTTTTCGTGATGATA 59.005 36.000 13.45 0.00 41.92 2.15
5278 5596 4.821805 ACACCAGAAACTTTTCGTGATGAT 59.178 37.500 13.45 0.00 41.92 2.45
5279 5597 4.196193 ACACCAGAAACTTTTCGTGATGA 58.804 39.130 13.45 0.00 41.92 2.92
5280 5598 4.273480 AGACACCAGAAACTTTTCGTGATG 59.727 41.667 13.45 5.75 41.92 3.07
5282 5600 3.621268 CAGACACCAGAAACTTTTCGTGA 59.379 43.478 13.45 0.00 41.92 4.35
5283 5601 3.242739 CCAGACACCAGAAACTTTTCGTG 60.243 47.826 7.70 7.70 41.92 4.35
5284 5602 2.943033 CCAGACACCAGAAACTTTTCGT 59.057 45.455 0.00 0.00 41.92 3.85
5285 5603 2.287009 GCCAGACACCAGAAACTTTTCG 60.287 50.000 0.00 0.00 41.92 3.46
5298 5637 1.251251 ATTCTTTGGCTGCCAGACAC 58.749 50.000 22.17 0.00 29.12 3.67
5304 5643 5.163519 TGAGCTTTTATATTCTTTGGCTGCC 60.164 40.000 12.87 12.87 0.00 4.85
5305 5644 5.745769 GTGAGCTTTTATATTCTTTGGCTGC 59.254 40.000 0.00 0.00 0.00 5.25
5333 5672 8.829612 CCAAACATGTTCTGCTTTTATCTTTTT 58.170 29.630 12.39 0.00 0.00 1.94
5334 5673 8.203485 TCCAAACATGTTCTGCTTTTATCTTTT 58.797 29.630 12.39 0.00 0.00 2.27
5336 5675 7.147976 GTCCAAACATGTTCTGCTTTTATCTT 58.852 34.615 12.39 0.00 0.00 2.40
5337 5676 6.294731 GGTCCAAACATGTTCTGCTTTTATCT 60.295 38.462 12.39 0.00 0.00 1.98
5338 5677 5.863935 GGTCCAAACATGTTCTGCTTTTATC 59.136 40.000 12.39 0.00 0.00 1.75
5339 5678 5.304101 TGGTCCAAACATGTTCTGCTTTTAT 59.696 36.000 12.39 0.00 0.00 1.40
5341 5680 3.450457 TGGTCCAAACATGTTCTGCTTTT 59.550 39.130 12.39 0.00 0.00 2.27
5342 5681 3.030291 TGGTCCAAACATGTTCTGCTTT 58.970 40.909 12.39 0.00 0.00 3.51
5343 5682 2.665165 TGGTCCAAACATGTTCTGCTT 58.335 42.857 12.39 0.00 0.00 3.91
5344 5683 2.363306 TGGTCCAAACATGTTCTGCT 57.637 45.000 12.39 0.00 0.00 4.24
5345 5684 3.451141 TTTGGTCCAAACATGTTCTGC 57.549 42.857 13.26 2.95 0.00 4.26
5348 5687 4.142049 TGGAGTTTTGGTCCAAACATGTTC 60.142 41.667 16.88 9.60 41.32 3.18
5350 5689 3.132111 GTGGAGTTTTGGTCCAAACATGT 59.868 43.478 16.88 0.00 45.85 3.21
5352 5691 3.642141 AGTGGAGTTTTGGTCCAAACAT 58.358 40.909 16.88 8.28 45.85 2.71
5353 5692 3.094484 AGTGGAGTTTTGGTCCAAACA 57.906 42.857 16.88 8.75 45.85 2.83
5354 5693 3.488553 CGAAGTGGAGTTTTGGTCCAAAC 60.489 47.826 16.88 11.74 45.85 2.93
5355 5694 2.685897 CGAAGTGGAGTTTTGGTCCAAA 59.314 45.455 13.26 13.26 45.85 3.28
5392 5731 1.003355 ATTGGGCCGAGACACTGTG 60.003 57.895 6.19 6.19 0.00 3.66
5396 5735 3.963428 ATATAGATTGGGCCGAGACAC 57.037 47.619 0.00 0.00 0.00 3.67
5398 5737 4.382147 GGAGAATATAGATTGGGCCGAGAC 60.382 50.000 0.00 0.00 0.00 3.36
5400 5739 3.515502 TGGAGAATATAGATTGGGCCGAG 59.484 47.826 0.00 0.00 0.00 4.63
5401 5740 3.260884 GTGGAGAATATAGATTGGGCCGA 59.739 47.826 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.