Multiple sequence alignment - TraesCS3B01G198200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G198200 chr3B 100.000 3004 0 0 1 3004 225466207 225463204 0.000000e+00 5548.0
1 TraesCS3B01G198200 chr3A 90.545 2274 101 57 147 2344 175631856 175634091 0.000000e+00 2904.0
2 TraesCS3B01G198200 chr3A 92.486 173 11 2 2653 2824 157045211 157045382 2.310000e-61 246.0
3 TraesCS3B01G198200 chr3A 81.771 192 10 9 2405 2587 175634295 175634470 1.450000e-28 137.0
4 TraesCS3B01G198200 chr3A 92.537 67 2 1 55 121 175631803 175631866 3.190000e-15 93.5
5 TraesCS3B01G198200 chr3D 89.130 1288 78 31 1403 2645 156145220 156146490 0.000000e+00 1546.0
6 TraesCS3B01G198200 chr3D 86.831 972 45 31 483 1405 156144201 156145138 0.000000e+00 1009.0
7 TraesCS3B01G198200 chr3D 92.714 398 20 6 7 399 156143634 156144027 1.560000e-157 566.0
8 TraesCS3B01G198200 chr2B 91.954 174 12 2 2657 2828 751258291 751258464 2.990000e-60 243.0
9 TraesCS3B01G198200 chr4B 91.954 174 11 3 2661 2832 99432916 99433088 1.080000e-59 241.0
10 TraesCS3B01G198200 chr4B 91.061 179 12 4 2656 2832 549133885 549133709 3.870000e-59 239.0
11 TraesCS3B01G198200 chr4B 91.011 178 14 2 2658 2834 606650433 606650609 3.870000e-59 239.0
12 TraesCS3B01G198200 chr4B 90.217 184 13 5 2657 2838 453769328 453769148 5.010000e-58 235.0
13 TraesCS3B01G198200 chr5A 90.217 184 17 1 2661 2843 8174662 8174479 3.870000e-59 239.0
14 TraesCS3B01G198200 chr5A 90.556 180 15 2 2654 2832 117510483 117510661 1.390000e-58 237.0
15 TraesCS3B01G198200 chr5A 90.556 180 15 2 2654 2832 118345417 118345239 1.390000e-58 237.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G198200 chr3B 225463204 225466207 3003 True 5548.000000 5548 100.000000 1 3004 1 chr3B.!!$R1 3003
1 TraesCS3B01G198200 chr3A 175631803 175634470 2667 False 1044.833333 2904 88.284333 55 2587 3 chr3A.!!$F2 2532
2 TraesCS3B01G198200 chr3D 156143634 156146490 2856 False 1040.333333 1546 89.558333 7 2645 3 chr3D.!!$F1 2638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
452 554 0.247735 CGTAGGACTGCGAGAAGACG 60.248 60.0 3.69 0.0 41.16 4.18 F
1103 1251 0.032017 ACTGCCTCCTCCGATTAGGT 60.032 55.0 0.00 0.0 41.99 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1555 1813 0.106669 AGAGGGGGCGATTTTAAGGC 60.107 55.0 0.00 0.0 0.00 4.35 R
2979 3452 0.034337 ACTTGGCGGCGAAAGTTAGA 59.966 50.0 18.82 0.0 32.75 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 6.314400 TCCTATTTTACGTTCCCAAATCTTCG 59.686 38.462 0.00 0.00 0.00 3.79
129 130 1.680522 GGAAGGGAGCAGCGAGATCA 61.681 60.000 0.00 0.00 33.23 2.92
175 176 6.147492 GGAGCATAGACAATTATGAAGCAGAG 59.853 42.308 0.00 0.00 33.75 3.35
176 177 5.469421 AGCATAGACAATTATGAAGCAGAGC 59.531 40.000 0.00 0.00 33.75 4.09
216 217 1.852633 ATAAAGCAAGGCCTGAACCC 58.147 50.000 5.69 0.00 0.00 4.11
222 223 1.821666 GCAAGGCCTGAACCCTACAAA 60.822 52.381 5.69 0.00 30.93 2.83
236 237 2.029918 CCTACAAACAAGCAAAGGCCTC 60.030 50.000 5.23 0.00 42.56 4.70
237 238 0.752658 ACAAACAAGCAAAGGCCTCC 59.247 50.000 5.23 0.00 42.56 4.30
284 285 5.241064 ACTTTTGATAGGCTCATGATGATGC 59.759 40.000 0.00 2.03 32.72 3.91
404 409 6.074835 CGTTACTGAACCATTCATCTCATACG 60.075 42.308 0.00 0.00 39.30 3.06
439 444 6.405278 TCAAATGAGCTTCATATCGTAGGA 57.595 37.500 0.00 0.00 35.76 2.94
440 445 6.216569 TCAAATGAGCTTCATATCGTAGGAC 58.783 40.000 0.00 0.00 35.76 3.85
441 446 6.040955 TCAAATGAGCTTCATATCGTAGGACT 59.959 38.462 0.00 0.00 35.76 3.85
442 447 4.837896 TGAGCTTCATATCGTAGGACTG 57.162 45.455 0.00 0.00 0.00 3.51
443 448 3.004839 TGAGCTTCATATCGTAGGACTGC 59.995 47.826 0.00 0.00 0.00 4.40
444 449 2.030717 AGCTTCATATCGTAGGACTGCG 60.031 50.000 3.35 3.35 40.03 5.18
452 554 0.247735 CGTAGGACTGCGAGAAGACG 60.248 60.000 3.69 0.00 41.16 4.18
477 579 7.272084 CGATGATCTGAAAATTCAAACCAGTTC 59.728 37.037 0.00 0.00 36.64 3.01
483 585 6.626302 TGAAAATTCAAACCAGTTCGAACTT 58.374 32.000 27.79 12.42 33.59 2.66
490 592 4.616181 AACCAGTTCGAACTTTGAACAG 57.384 40.909 27.79 14.42 46.34 3.16
533 640 1.267806 CCTTTGACCTGCACACATCAC 59.732 52.381 0.00 0.00 0.00 3.06
535 642 1.308047 TTGACCTGCACACATCACAC 58.692 50.000 0.00 0.00 0.00 3.82
536 643 0.879839 TGACCTGCACACATCACACG 60.880 55.000 0.00 0.00 0.00 4.49
538 645 2.327343 CCTGCACACATCACACGGG 61.327 63.158 0.00 0.00 0.00 5.28
604 721 1.243342 AATGCATGTGTGTGGTCCGG 61.243 55.000 0.00 0.00 0.00 5.14
627 744 1.639280 CAAAACCAAAAGCGCACAGT 58.361 45.000 11.47 0.00 0.00 3.55
628 745 1.324134 CAAAACCAAAAGCGCACAGTG 59.676 47.619 11.47 1.29 0.00 3.66
629 746 0.805711 AAACCAAAAGCGCACAGTGC 60.806 50.000 16.21 16.21 40.69 4.40
684 801 0.252479 CAGAGAGCCAGCCAGTTCAT 59.748 55.000 0.00 0.00 0.00 2.57
697 814 0.321671 AGTTCATGCTGGTACACGCT 59.678 50.000 7.08 0.00 34.50 5.07
754 872 2.766263 GGACCAGAGTCACATGACCATA 59.234 50.000 8.41 0.00 45.48 2.74
775 905 0.394899 CCATGCCCAGACCCTCTTTC 60.395 60.000 0.00 0.00 0.00 2.62
776 906 0.745845 CATGCCCAGACCCTCTTTCG 60.746 60.000 0.00 0.00 0.00 3.46
777 907 1.201429 ATGCCCAGACCCTCTTTCGT 61.201 55.000 0.00 0.00 0.00 3.85
941 1082 1.662686 CCCCTTCCCTGTCTCTTCTT 58.337 55.000 0.00 0.00 0.00 2.52
943 1084 1.339535 CCCTTCCCTGTCTCTTCTTGC 60.340 57.143 0.00 0.00 0.00 4.01
947 1088 0.251634 CCCTGTCTCTTCTTGCCCTC 59.748 60.000 0.00 0.00 0.00 4.30
948 1089 1.274712 CCTGTCTCTTCTTGCCCTCT 58.725 55.000 0.00 0.00 0.00 3.69
949 1090 1.206849 CCTGTCTCTTCTTGCCCTCTC 59.793 57.143 0.00 0.00 0.00 3.20
977 1119 0.676151 CAGTCTTGGCCTCCTTGCTC 60.676 60.000 3.32 0.00 0.00 4.26
1047 1195 0.381801 CGCTCCTGCTCTTCTCTCTC 59.618 60.000 0.00 0.00 36.97 3.20
1066 1214 2.749441 GGCTTGTGCTCCTCTGCC 60.749 66.667 0.00 0.00 39.59 4.85
1078 1226 0.324738 CCTCTGCCTCACCTCAGGTA 60.325 60.000 0.00 0.00 35.72 3.08
1084 1232 1.561643 CCTCACCTCAGGTAAGCTCA 58.438 55.000 0.00 0.00 32.11 4.26
1103 1251 0.032017 ACTGCCTCCTCCGATTAGGT 60.032 55.000 0.00 0.00 41.99 3.08
1110 1258 3.491342 CTCCTCCGATTAGGTGATCTCA 58.509 50.000 0.00 0.00 41.99 3.27
1138 1295 6.128282 ACACTGTTTGACTGTTTGTTCAGTAG 60.128 38.462 0.00 0.00 46.81 2.57
1160 1322 2.933287 TGGGGTTGCTCCGATGGT 60.933 61.111 0.00 0.00 37.00 3.55
1314 1478 8.188531 CCAAAATGTGGTTCATGTTATGATTC 57.811 34.615 0.00 0.00 43.20 2.52
1383 1557 1.138266 GCGGAACCCAGTTATCTGCTA 59.862 52.381 0.00 0.00 41.25 3.49
1422 1680 4.385825 TCTACCAGCGTGTTCTTGATTTT 58.614 39.130 0.00 0.00 0.00 1.82
1434 1692 7.295201 GTGTTCTTGATTTTGATACGCACTTA 58.705 34.615 0.00 0.00 0.00 2.24
1511 1769 8.594881 TCTAAGAAACTGACATTTCTCTGTTC 57.405 34.615 11.05 0.00 46.02 3.18
1517 1775 7.432350 AACTGACATTTCTCTGTTCTTGATC 57.568 36.000 0.00 0.00 29.05 2.92
1572 1830 0.683179 GTGCCTTAAAATCGCCCCCT 60.683 55.000 0.00 0.00 0.00 4.79
1573 1831 0.395173 TGCCTTAAAATCGCCCCCTC 60.395 55.000 0.00 0.00 0.00 4.30
1574 1832 0.106669 GCCTTAAAATCGCCCCCTCT 60.107 55.000 0.00 0.00 0.00 3.69
1575 1833 1.968704 CCTTAAAATCGCCCCCTCTC 58.031 55.000 0.00 0.00 0.00 3.20
1576 1834 1.477014 CCTTAAAATCGCCCCCTCTCC 60.477 57.143 0.00 0.00 0.00 3.71
1577 1835 1.490910 CTTAAAATCGCCCCCTCTCCT 59.509 52.381 0.00 0.00 0.00 3.69
1578 1836 1.591768 TAAAATCGCCCCCTCTCCTT 58.408 50.000 0.00 0.00 0.00 3.36
1579 1837 0.256177 AAAATCGCCCCCTCTCCTTC 59.744 55.000 0.00 0.00 0.00 3.46
1580 1838 1.636769 AAATCGCCCCCTCTCCTTCC 61.637 60.000 0.00 0.00 0.00 3.46
1581 1839 4.798682 TCGCCCCCTCTCCTTCCC 62.799 72.222 0.00 0.00 0.00 3.97
1600 1858 2.481449 CCCCTTCCTTCTGTAATCGTCG 60.481 54.545 0.00 0.00 0.00 5.12
1601 1859 2.194271 CCTTCCTTCTGTAATCGTCGC 58.806 52.381 0.00 0.00 0.00 5.19
1607 1865 3.551046 CCTTCTGTAATCGTCGCTAGCAT 60.551 47.826 16.45 0.00 0.00 3.79
1608 1866 4.320275 CCTTCTGTAATCGTCGCTAGCATA 60.320 45.833 16.45 0.00 0.00 3.14
1636 1894 4.332819 GTGTATGTGCTGATCCAACTAACC 59.667 45.833 0.00 0.00 0.00 2.85
1652 1910 2.282462 CCTGGGTGGTGGCAACTC 60.282 66.667 3.27 0.00 37.61 3.01
1659 1917 1.597854 TGGTGGCAACTCGCAGAAG 60.598 57.895 3.27 0.00 45.17 2.85
1820 2078 1.135083 CGTCGCCATGAACCTCTACTT 60.135 52.381 0.00 0.00 0.00 2.24
1931 2189 2.119009 TGCCTACCTGCAGAGATCG 58.881 57.895 17.39 0.00 36.04 3.69
1932 2190 0.395724 TGCCTACCTGCAGAGATCGA 60.396 55.000 17.39 0.00 36.04 3.59
1933 2191 0.031449 GCCTACCTGCAGAGATCGAC 59.969 60.000 17.39 0.00 0.00 4.20
2008 2270 3.128764 TCGTGCACCTACTACTGATCTTG 59.871 47.826 12.15 0.00 0.00 3.02
2060 2322 3.184581 CGCAGTAGGTTCTTCTTGTGTTC 59.815 47.826 0.00 0.00 0.00 3.18
2176 2443 3.244078 TGGGTTAACTGCTAGTGTCTGTG 60.244 47.826 5.42 0.00 0.00 3.66
2186 2453 1.382522 AGTGTCTGTGTTGCCTGTTG 58.617 50.000 0.00 0.00 0.00 3.33
2190 2477 1.102154 TCTGTGTTGCCTGTTGTTGG 58.898 50.000 0.00 0.00 0.00 3.77
2226 2523 2.631160 ACTGATCGATCTCTCTCCGT 57.369 50.000 25.02 8.65 0.00 4.69
2232 2529 1.739338 CGATCTCTCTCCGTTGGGGG 61.739 65.000 0.00 0.00 36.01 5.40
2247 2544 5.137551 CGTTGGGGGACTTATTAATCCATT 58.862 41.667 0.00 0.00 36.65 3.16
2248 2545 5.240844 CGTTGGGGGACTTATTAATCCATTC 59.759 44.000 0.00 0.00 36.65 2.67
2249 2546 5.333566 TGGGGGACTTATTAATCCATTCC 57.666 43.478 0.00 0.00 36.65 3.01
2250 2547 4.734503 TGGGGGACTTATTAATCCATTCCA 59.265 41.667 0.00 0.00 36.65 3.53
2251 2548 5.196779 TGGGGGACTTATTAATCCATTCCAA 59.803 40.000 0.00 0.00 36.65 3.53
2294 2597 8.785329 TTTATTGTTCTATGACTGCATGTGTA 57.215 30.769 0.00 0.00 35.94 2.90
2313 2616 2.599645 ATCGTGCTCCAGATGTGGGC 62.600 60.000 9.38 11.74 45.11 5.36
2315 2618 2.352422 TGCTCCAGATGTGGGCAC 59.648 61.111 17.39 5.59 45.11 5.01
2398 2849 0.944386 GGAATTGTGTGCAGTCGTGT 59.056 50.000 0.00 0.00 0.00 4.49
2457 2914 6.038382 TGAACAAGTACCATTGCGTTTTTCTA 59.962 34.615 0.00 0.00 33.28 2.10
2481 2938 1.262417 CACTTCCATCGGATGCGAATG 59.738 52.381 14.89 12.14 31.08 2.67
2485 2942 1.082300 CATCGGATGCGAATGCTGC 60.082 57.895 14.89 0.00 43.34 5.25
2491 2948 1.135315 GGATGCGAATGCTGCAAAAGA 60.135 47.619 6.36 0.00 46.87 2.52
2500 2957 5.332506 CGAATGCTGCAAAAGAAAACGAAAT 60.333 36.000 6.36 0.00 0.00 2.17
2510 2967 7.425309 GCAAAAGAAAACGAAATGAAAAGGTTC 59.575 33.333 0.00 0.00 0.00 3.62
2551 3008 3.871485 CCCATCCAAAGAGAGAAGTCTG 58.129 50.000 0.00 0.00 30.97 3.51
2567 3033 8.773404 GAGAAGTCTGGTCTCTCTATCTATAC 57.227 42.308 0.00 0.00 38.80 1.47
2568 3034 7.686434 AGAAGTCTGGTCTCTCTATCTATACC 58.314 42.308 0.00 0.00 0.00 2.73
2569 3035 7.516209 AGAAGTCTGGTCTCTCTATCTATACCT 59.484 40.741 0.00 0.00 0.00 3.08
2570 3036 8.745149 AAGTCTGGTCTCTCTATCTATACCTA 57.255 38.462 0.00 0.00 0.00 3.08
2571 3037 8.927059 AGTCTGGTCTCTCTATCTATACCTAT 57.073 38.462 0.00 0.00 0.00 2.57
2666 3139 8.540388 TGTATCAATGCCTTCTATATTACTCCC 58.460 37.037 0.00 0.00 0.00 4.30
2667 3140 7.821134 ATCAATGCCTTCTATATTACTCCCT 57.179 36.000 0.00 0.00 0.00 4.20
2668 3141 7.246171 TCAATGCCTTCTATATTACTCCCTC 57.754 40.000 0.00 0.00 0.00 4.30
2669 3142 6.213600 TCAATGCCTTCTATATTACTCCCTCC 59.786 42.308 0.00 0.00 0.00 4.30
2670 3143 4.087182 TGCCTTCTATATTACTCCCTCCG 58.913 47.826 0.00 0.00 0.00 4.63
2671 3144 4.087907 GCCTTCTATATTACTCCCTCCGT 58.912 47.826 0.00 0.00 0.00 4.69
2672 3145 4.527427 GCCTTCTATATTACTCCCTCCGTT 59.473 45.833 0.00 0.00 0.00 4.44
2673 3146 5.011840 GCCTTCTATATTACTCCCTCCGTTT 59.988 44.000 0.00 0.00 0.00 3.60
2674 3147 6.689554 CCTTCTATATTACTCCCTCCGTTTC 58.310 44.000 0.00 0.00 0.00 2.78
2675 3148 6.494146 CCTTCTATATTACTCCCTCCGTTTCT 59.506 42.308 0.00 0.00 0.00 2.52
2676 3149 7.668886 CCTTCTATATTACTCCCTCCGTTTCTA 59.331 40.741 0.00 0.00 0.00 2.10
2677 3150 9.075678 CTTCTATATTACTCCCTCCGTTTCTAA 57.924 37.037 0.00 0.00 0.00 2.10
2678 3151 9.425248 TTCTATATTACTCCCTCCGTTTCTAAA 57.575 33.333 0.00 0.00 0.00 1.85
2679 3152 9.597681 TCTATATTACTCCCTCCGTTTCTAAAT 57.402 33.333 0.00 0.00 0.00 1.40
2684 3157 8.726870 TTACTCCCTCCGTTTCTAAATAATTG 57.273 34.615 0.00 0.00 0.00 2.32
2685 3158 6.718294 ACTCCCTCCGTTTCTAAATAATTGT 58.282 36.000 0.00 0.00 0.00 2.71
2686 3159 7.173032 ACTCCCTCCGTTTCTAAATAATTGTT 58.827 34.615 0.00 0.00 0.00 2.83
2687 3160 7.668469 ACTCCCTCCGTTTCTAAATAATTGTTT 59.332 33.333 5.47 5.47 0.00 2.83
2688 3161 8.411991 TCCCTCCGTTTCTAAATAATTGTTTT 57.588 30.769 5.44 0.01 0.00 2.43
2689 3162 8.862085 TCCCTCCGTTTCTAAATAATTGTTTTT 58.138 29.630 5.44 0.00 0.00 1.94
2690 3163 9.135843 CCCTCCGTTTCTAAATAATTGTTTTTC 57.864 33.333 5.44 0.00 0.00 2.29
2691 3164 9.908152 CCTCCGTTTCTAAATAATTGTTTTTCT 57.092 29.630 5.44 0.00 0.00 2.52
2722 3195 9.760077 ATTTTAAATGGACTACTACATAGGACG 57.240 33.333 0.00 0.00 34.89 4.79
2723 3196 7.886629 TTAAATGGACTACTACATAGGACGT 57.113 36.000 0.00 0.00 34.89 4.34
2724 3197 8.978874 TTAAATGGACTACTACATAGGACGTA 57.021 34.615 0.00 0.00 34.89 3.57
2725 3198 9.578576 TTAAATGGACTACTACATAGGACGTAT 57.421 33.333 0.00 0.00 34.89 3.06
2726 3199 7.450124 AATGGACTACTACATAGGACGTATG 57.550 40.000 12.51 12.51 43.89 2.39
2742 3215 8.897872 AGGACGTATGTAAACATATTTTAGGG 57.102 34.615 6.12 0.00 40.53 3.53
2743 3216 8.488668 AGGACGTATGTAAACATATTTTAGGGT 58.511 33.333 6.12 0.00 40.53 4.34
2744 3217 8.553696 GGACGTATGTAAACATATTTTAGGGTG 58.446 37.037 6.12 0.00 40.53 4.61
2745 3218 9.101655 GACGTATGTAAACATATTTTAGGGTGT 57.898 33.333 6.12 0.00 40.53 4.16
2754 3227 9.975218 AAACATATTTTAGGGTGTAGATTCACT 57.025 29.630 0.00 0.00 38.28 3.41
2755 3228 9.614792 AACATATTTTAGGGTGTAGATTCACTC 57.385 33.333 0.00 0.00 38.92 3.51
2756 3229 8.768397 ACATATTTTAGGGTGTAGATTCACTCA 58.232 33.333 0.00 0.00 40.86 3.41
2757 3230 9.784531 CATATTTTAGGGTGTAGATTCACTCAT 57.215 33.333 0.00 0.00 40.86 2.90
2759 3232 8.738645 ATTTTAGGGTGTAGATTCACTCATTC 57.261 34.615 0.00 0.00 40.86 2.67
2760 3233 7.496346 TTTAGGGTGTAGATTCACTCATTCT 57.504 36.000 0.00 0.00 40.86 2.40
2761 3234 5.350504 AGGGTGTAGATTCACTCATTCTG 57.649 43.478 0.00 0.00 40.86 3.02
2762 3235 3.873952 GGGTGTAGATTCACTCATTCTGC 59.126 47.826 0.00 0.00 38.54 4.26
2763 3236 4.383552 GGGTGTAGATTCACTCATTCTGCT 60.384 45.833 0.00 0.00 38.54 4.24
2764 3237 5.181748 GGTGTAGATTCACTCATTCTGCTT 58.818 41.667 0.00 0.00 38.28 3.91
2765 3238 5.293079 GGTGTAGATTCACTCATTCTGCTTC 59.707 44.000 0.00 0.00 38.28 3.86
2766 3239 5.005203 GTGTAGATTCACTCATTCTGCTTCG 59.995 44.000 0.00 0.00 35.68 3.79
2767 3240 4.199432 AGATTCACTCATTCTGCTTCGT 57.801 40.909 0.00 0.00 0.00 3.85
2768 3241 5.330455 AGATTCACTCATTCTGCTTCGTA 57.670 39.130 0.00 0.00 0.00 3.43
2769 3242 5.911752 AGATTCACTCATTCTGCTTCGTAT 58.088 37.500 0.00 0.00 0.00 3.06
2770 3243 5.752472 AGATTCACTCATTCTGCTTCGTATG 59.248 40.000 0.00 0.00 0.00 2.39
2771 3244 4.456280 TCACTCATTCTGCTTCGTATGT 57.544 40.909 0.00 0.00 0.00 2.29
2772 3245 5.576447 TCACTCATTCTGCTTCGTATGTA 57.424 39.130 0.00 0.00 0.00 2.29
2773 3246 5.582550 TCACTCATTCTGCTTCGTATGTAG 58.417 41.667 0.00 0.00 0.00 2.74
2774 3247 5.125578 TCACTCATTCTGCTTCGTATGTAGT 59.874 40.000 0.00 0.00 0.00 2.73
2775 3248 5.457148 CACTCATTCTGCTTCGTATGTAGTC 59.543 44.000 0.00 0.00 0.00 2.59
2776 3249 5.125578 ACTCATTCTGCTTCGTATGTAGTCA 59.874 40.000 0.00 0.00 0.00 3.41
2777 3250 5.340803 TCATTCTGCTTCGTATGTAGTCAC 58.659 41.667 0.00 0.00 0.00 3.67
2778 3251 5.125578 TCATTCTGCTTCGTATGTAGTCACT 59.874 40.000 0.00 0.00 0.00 3.41
2779 3252 5.386958 TTCTGCTTCGTATGTAGTCACTT 57.613 39.130 0.00 0.00 0.00 3.16
2780 3253 4.733850 TCTGCTTCGTATGTAGTCACTTG 58.266 43.478 0.00 0.00 0.00 3.16
2781 3254 4.217767 TCTGCTTCGTATGTAGTCACTTGT 59.782 41.667 0.00 0.00 0.00 3.16
2782 3255 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
2783 3256 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
2784 3257 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
2785 3258 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
2786 3259 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
2787 3260 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
2788 3261 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
2789 3262 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
2790 3263 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
2791 3264 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
2792 3265 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
2793 3266 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2794 3267 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2795 3268 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2796 3269 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2797 3270 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2798 3271 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2799 3272 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2800 3273 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2801 3274 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2802 3275 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
2818 3291 9.454859 AGAAAGACAAATATTTAGGAACAGAGG 57.545 33.333 0.00 0.00 0.00 3.69
2819 3292 8.581253 AAAGACAAATATTTAGGAACAGAGGG 57.419 34.615 0.00 0.00 0.00 4.30
2820 3293 7.510675 AGACAAATATTTAGGAACAGAGGGA 57.489 36.000 0.00 0.00 0.00 4.20
2821 3294 7.569240 AGACAAATATTTAGGAACAGAGGGAG 58.431 38.462 0.00 0.00 0.00 4.30
2822 3295 7.182930 AGACAAATATTTAGGAACAGAGGGAGT 59.817 37.037 0.00 0.00 0.00 3.85
2823 3296 8.388656 ACAAATATTTAGGAACAGAGGGAGTA 57.611 34.615 0.00 0.00 0.00 2.59
2824 3297 9.004231 ACAAATATTTAGGAACAGAGGGAGTAT 57.996 33.333 0.00 0.00 0.00 2.12
2858 3331 7.887996 TTTTGCCTATTTACTTTGCATCAAG 57.112 32.000 0.00 0.00 0.00 3.02
2859 3332 6.832520 TTGCCTATTTACTTTGCATCAAGA 57.167 33.333 5.15 0.00 0.00 3.02
2860 3333 7.408756 TTGCCTATTTACTTTGCATCAAGAT 57.591 32.000 5.15 0.00 0.00 2.40
2861 3334 7.408756 TGCCTATTTACTTTGCATCAAGATT 57.591 32.000 5.15 0.00 0.00 2.40
2862 3335 7.839907 TGCCTATTTACTTTGCATCAAGATTT 58.160 30.769 5.15 0.00 0.00 2.17
2863 3336 7.760794 TGCCTATTTACTTTGCATCAAGATTTG 59.239 33.333 5.15 0.00 0.00 2.32
2864 3337 7.761249 GCCTATTTACTTTGCATCAAGATTTGT 59.239 33.333 5.15 0.00 0.00 2.83
2865 3338 9.294030 CCTATTTACTTTGCATCAAGATTTGTC 57.706 33.333 5.15 0.00 0.00 3.18
2866 3339 9.844790 CTATTTACTTTGCATCAAGATTTGTCA 57.155 29.630 5.15 0.00 0.00 3.58
2867 3340 7.928908 TTTACTTTGCATCAAGATTTGTCAC 57.071 32.000 5.15 0.00 0.00 3.67
2868 3341 4.539870 ACTTTGCATCAAGATTTGTCACG 58.460 39.130 5.15 0.00 0.00 4.35
2869 3342 4.036734 ACTTTGCATCAAGATTTGTCACGT 59.963 37.500 5.15 0.00 0.00 4.49
2870 3343 5.238432 ACTTTGCATCAAGATTTGTCACGTA 59.762 36.000 5.15 0.00 0.00 3.57
2871 3344 5.878332 TTGCATCAAGATTTGTCACGTAT 57.122 34.783 0.00 0.00 0.00 3.06
2872 3345 5.220557 TGCATCAAGATTTGTCACGTATG 57.779 39.130 0.00 0.00 0.00 2.39
2873 3346 4.094739 TGCATCAAGATTTGTCACGTATGG 59.905 41.667 0.00 0.00 0.00 2.74
2874 3347 4.094887 GCATCAAGATTTGTCACGTATGGT 59.905 41.667 0.00 0.00 0.00 3.55
2875 3348 5.727791 GCATCAAGATTTGTCACGTATGGTC 60.728 44.000 0.00 0.00 0.00 4.02
2876 3349 4.250464 TCAAGATTTGTCACGTATGGTCC 58.750 43.478 0.00 0.00 0.00 4.46
2877 3350 4.020573 TCAAGATTTGTCACGTATGGTCCT 60.021 41.667 0.00 0.00 0.00 3.85
2878 3351 4.553330 AGATTTGTCACGTATGGTCCTT 57.447 40.909 0.00 0.00 0.00 3.36
2879 3352 4.906618 AGATTTGTCACGTATGGTCCTTT 58.093 39.130 0.00 0.00 0.00 3.11
2880 3353 5.313712 AGATTTGTCACGTATGGTCCTTTT 58.686 37.500 0.00 0.00 0.00 2.27
2881 3354 6.469410 AGATTTGTCACGTATGGTCCTTTTA 58.531 36.000 0.00 0.00 0.00 1.52
2882 3355 7.110155 AGATTTGTCACGTATGGTCCTTTTAT 58.890 34.615 0.00 0.00 0.00 1.40
2883 3356 7.610305 AGATTTGTCACGTATGGTCCTTTTATT 59.390 33.333 0.00 0.00 0.00 1.40
2884 3357 6.489127 TTGTCACGTATGGTCCTTTTATTG 57.511 37.500 0.00 0.00 0.00 1.90
2885 3358 5.553123 TGTCACGTATGGTCCTTTTATTGT 58.447 37.500 0.00 0.00 0.00 2.71
2886 3359 5.410132 TGTCACGTATGGTCCTTTTATTGTG 59.590 40.000 0.00 0.00 0.00 3.33
2887 3360 5.640357 GTCACGTATGGTCCTTTTATTGTGA 59.360 40.000 0.00 0.00 0.00 3.58
2888 3361 5.872617 TCACGTATGGTCCTTTTATTGTGAG 59.127 40.000 0.00 0.00 0.00 3.51
2889 3362 5.872617 CACGTATGGTCCTTTTATTGTGAGA 59.127 40.000 0.00 0.00 0.00 3.27
2890 3363 6.370442 CACGTATGGTCCTTTTATTGTGAGAA 59.630 38.462 0.00 0.00 0.00 2.87
2891 3364 6.938030 ACGTATGGTCCTTTTATTGTGAGAAA 59.062 34.615 0.00 0.00 0.00 2.52
2892 3365 7.446013 ACGTATGGTCCTTTTATTGTGAGAAAA 59.554 33.333 0.00 0.00 0.00 2.29
2893 3366 8.293867 CGTATGGTCCTTTTATTGTGAGAAAAA 58.706 33.333 0.00 0.00 0.00 1.94
2906 3379 6.494893 TGTGAGAAAAATATTTGACTCCCG 57.505 37.500 21.47 0.00 0.00 5.14
2907 3380 6.001460 TGTGAGAAAAATATTTGACTCCCGT 58.999 36.000 21.47 0.00 0.00 5.28
2908 3381 6.072728 TGTGAGAAAAATATTTGACTCCCGTG 60.073 38.462 21.47 0.00 0.00 4.94
2909 3382 5.414454 TGAGAAAAATATTTGACTCCCGTGG 59.586 40.000 21.47 0.00 0.00 4.94
2910 3383 4.157840 AGAAAAATATTTGACTCCCGTGGC 59.842 41.667 0.39 0.00 0.00 5.01
2911 3384 2.799126 AATATTTGACTCCCGTGGCA 57.201 45.000 0.00 0.00 0.00 4.92
2912 3385 2.799126 ATATTTGACTCCCGTGGCAA 57.201 45.000 0.00 0.00 0.00 4.52
2913 3386 2.799126 TATTTGACTCCCGTGGCAAT 57.201 45.000 0.00 0.00 0.00 3.56
2914 3387 1.176527 ATTTGACTCCCGTGGCAATG 58.823 50.000 0.00 0.00 0.00 2.82
2915 3388 1.523154 TTTGACTCCCGTGGCAATGC 61.523 55.000 0.00 0.00 0.00 3.56
2916 3389 2.359850 GACTCCCGTGGCAATGCA 60.360 61.111 7.79 0.00 0.00 3.96
2917 3390 2.672996 ACTCCCGTGGCAATGCAC 60.673 61.111 7.79 2.62 0.00 4.57
2918 3391 3.803082 CTCCCGTGGCAATGCACG 61.803 66.667 18.30 18.30 43.57 5.34
2919 3392 4.321966 TCCCGTGGCAATGCACGA 62.322 61.111 23.91 8.82 46.46 4.35
2920 3393 3.803082 CCCGTGGCAATGCACGAG 61.803 66.667 23.91 12.58 46.46 4.18
2921 3394 4.465512 CCGTGGCAATGCACGAGC 62.466 66.667 23.91 0.00 46.46 5.03
2932 3405 3.989104 GCACGAGCATATACCTGGT 57.011 52.632 4.05 4.05 41.58 4.00
2933 3406 1.784525 GCACGAGCATATACCTGGTC 58.215 55.000 0.63 0.00 41.58 4.02
2934 3407 1.605712 GCACGAGCATATACCTGGTCC 60.606 57.143 0.63 0.00 39.85 4.46
2935 3408 1.686587 CACGAGCATATACCTGGTCCA 59.313 52.381 0.63 0.00 39.85 4.02
2936 3409 2.102420 CACGAGCATATACCTGGTCCAA 59.898 50.000 0.63 0.00 39.85 3.53
2937 3410 2.769663 ACGAGCATATACCTGGTCCAAA 59.230 45.455 0.63 0.00 39.85 3.28
2938 3411 3.199071 ACGAGCATATACCTGGTCCAAAA 59.801 43.478 0.63 0.00 39.85 2.44
2939 3412 4.196193 CGAGCATATACCTGGTCCAAAAA 58.804 43.478 0.63 0.00 39.85 1.94
2963 3436 6.801539 AAAGAGCGAAAATGTTACAGATCA 57.198 33.333 0.00 0.00 0.00 2.92
2964 3437 6.801539 AAGAGCGAAAATGTTACAGATCAA 57.198 33.333 0.00 0.00 0.00 2.57
2965 3438 6.170675 AGAGCGAAAATGTTACAGATCAAC 57.829 37.500 0.00 0.00 0.00 3.18
2966 3439 4.957971 AGCGAAAATGTTACAGATCAACG 58.042 39.130 0.00 0.00 0.00 4.10
2967 3440 4.451096 AGCGAAAATGTTACAGATCAACGT 59.549 37.500 0.00 0.00 0.00 3.99
2968 3441 5.049680 AGCGAAAATGTTACAGATCAACGTT 60.050 36.000 0.00 0.00 36.84 3.99
2969 3442 6.146510 AGCGAAAATGTTACAGATCAACGTTA 59.853 34.615 0.00 0.00 34.77 3.18
2970 3443 6.461698 GCGAAAATGTTACAGATCAACGTTAG 59.538 38.462 0.00 0.00 34.77 2.34
2971 3444 7.620600 GCGAAAATGTTACAGATCAACGTTAGA 60.621 37.037 0.00 1.34 34.77 2.10
2972 3445 8.380644 CGAAAATGTTACAGATCAACGTTAGAT 58.619 33.333 0.00 6.71 34.77 1.98
2994 3467 2.691984 TTTTTCTAACTTTCGCCGCC 57.308 45.000 0.00 0.00 0.00 6.13
2995 3468 1.595466 TTTTCTAACTTTCGCCGCCA 58.405 45.000 0.00 0.00 0.00 5.69
2996 3469 1.595466 TTTCTAACTTTCGCCGCCAA 58.405 45.000 0.00 0.00 0.00 4.52
2997 3470 1.153353 TTCTAACTTTCGCCGCCAAG 58.847 50.000 0.00 0.00 0.00 3.61
2998 3471 0.034337 TCTAACTTTCGCCGCCAAGT 59.966 50.000 0.00 0.00 34.58 3.16
2999 3472 0.872388 CTAACTTTCGCCGCCAAGTT 59.128 50.000 15.52 15.52 43.91 2.66
3000 3473 1.265905 CTAACTTTCGCCGCCAAGTTT 59.734 47.619 16.16 4.98 39.69 2.66
3001 3474 0.458260 AACTTTCGCCGCCAAGTTTT 59.542 45.000 8.03 0.00 39.69 2.43
3002 3475 0.458260 ACTTTCGCCGCCAAGTTTTT 59.542 45.000 0.00 0.00 28.27 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 8.672823 AGATTTGGGAACGTAAAATAGGATAC 57.327 34.615 0.00 0.00 0.00 2.24
13 14 9.333724 GAAGATTTGGGAACGTAAAATAGGATA 57.666 33.333 0.00 0.00 0.00 2.59
16 17 6.314400 TCGAAGATTTGGGAACGTAAAATAGG 59.686 38.462 0.00 0.00 0.00 2.57
25 26 2.484264 AGCTTTCGAAGATTTGGGAACG 59.516 45.455 0.00 0.00 35.04 3.95
129 130 3.563043 CCTTCCTTCCTTCCTTTGATGCT 60.563 47.826 0.00 0.00 0.00 3.79
175 176 2.093447 TCCTGATTCTTTCCTTCCTCGC 60.093 50.000 0.00 0.00 0.00 5.03
176 177 3.895232 TCCTGATTCTTTCCTTCCTCG 57.105 47.619 0.00 0.00 0.00 4.63
216 217 2.029918 GGAGGCCTTTGCTTGTTTGTAG 60.030 50.000 6.77 0.00 37.74 2.74
222 223 0.038310 GTAGGGAGGCCTTTGCTTGT 59.962 55.000 6.77 0.00 37.74 3.16
237 238 2.081462 CTTGCCCTTAAACGTGGTAGG 58.919 52.381 0.00 0.00 0.00 3.18
284 285 7.309621 GGGACAAATCATCTCAATAATGATGGG 60.310 40.741 0.00 0.00 41.79 4.00
424 429 2.031069 TCGCAGTCCTACGATATGAAGC 60.031 50.000 0.00 0.00 32.45 3.86
434 439 1.085091 TCGTCTTCTCGCAGTCCTAC 58.915 55.000 0.00 0.00 0.00 3.18
435 440 1.671328 CATCGTCTTCTCGCAGTCCTA 59.329 52.381 0.00 0.00 0.00 2.94
436 441 0.453793 CATCGTCTTCTCGCAGTCCT 59.546 55.000 0.00 0.00 0.00 3.85
437 442 0.452184 TCATCGTCTTCTCGCAGTCC 59.548 55.000 0.00 0.00 0.00 3.85
439 444 2.020720 AGATCATCGTCTTCTCGCAGT 58.979 47.619 0.00 0.00 0.00 4.40
440 445 2.032675 TCAGATCATCGTCTTCTCGCAG 59.967 50.000 0.00 0.00 0.00 5.18
441 446 2.017049 TCAGATCATCGTCTTCTCGCA 58.983 47.619 0.00 0.00 0.00 5.10
442 447 2.765108 TCAGATCATCGTCTTCTCGC 57.235 50.000 0.00 0.00 0.00 5.03
443 448 6.254373 TGAATTTTCAGATCATCGTCTTCTCG 59.746 38.462 0.00 0.00 32.50 4.04
444 449 7.531280 TGAATTTTCAGATCATCGTCTTCTC 57.469 36.000 0.00 0.00 32.50 2.87
445 450 7.912056 TTGAATTTTCAGATCATCGTCTTCT 57.088 32.000 0.00 0.00 38.61 2.85
446 451 7.483059 GGTTTGAATTTTCAGATCATCGTCTTC 59.517 37.037 0.00 0.00 38.61 2.87
452 554 7.272084 CGAACTGGTTTGAATTTTCAGATCATC 59.728 37.037 0.00 0.00 38.61 2.92
477 579 0.657368 GCACCGCTGTTCAAAGTTCG 60.657 55.000 0.00 0.00 0.00 3.95
483 585 1.098869 TTGAAAGCACCGCTGTTCAA 58.901 45.000 15.74 15.74 40.04 2.69
490 592 0.598065 ATCCTGTTTGAAAGCACCGC 59.402 50.000 0.00 0.00 0.00 5.68
533 640 1.153489 CTCTGTCCATCAGCCCGTG 60.153 63.158 0.00 0.00 43.32 4.94
535 642 2.202987 GCTCTGTCCATCAGCCCG 60.203 66.667 0.00 0.00 43.32 6.13
536 643 1.153208 CTGCTCTGTCCATCAGCCC 60.153 63.158 0.00 0.00 43.32 5.19
538 645 0.810823 GCTCTGCTCTGTCCATCAGC 60.811 60.000 0.00 0.00 43.32 4.26
604 721 1.326245 GTGCGCTTTTGGTTTTGGTTC 59.674 47.619 9.73 0.00 0.00 3.62
628 745 4.373116 TTCCTCCGCAGTGTCCGC 62.373 66.667 0.00 0.00 0.00 5.54
629 746 2.432628 GTTCCTCCGCAGTGTCCG 60.433 66.667 0.00 0.00 0.00 4.79
630 747 2.047179 GGTTCCTCCGCAGTGTCC 60.047 66.667 0.00 0.00 0.00 4.02
631 748 0.534203 TTTGGTTCCTCCGCAGTGTC 60.534 55.000 0.00 0.00 39.52 3.67
632 749 0.818040 GTTTGGTTCCTCCGCAGTGT 60.818 55.000 0.00 0.00 39.52 3.55
633 750 0.535102 AGTTTGGTTCCTCCGCAGTG 60.535 55.000 0.00 0.00 39.52 3.66
634 751 0.250338 GAGTTTGGTTCCTCCGCAGT 60.250 55.000 0.00 0.00 39.52 4.40
635 752 0.035458 AGAGTTTGGTTCCTCCGCAG 59.965 55.000 0.00 0.00 39.52 5.18
684 801 2.577059 GCCTAGCGTGTACCAGCA 59.423 61.111 11.44 0.00 35.48 4.41
697 814 2.039974 CAACTGCCATGTGCGCCTA 61.040 57.895 4.18 0.00 45.60 3.93
719 837 2.231380 GGTCCCTGGCTTCTTCCCA 61.231 63.158 0.00 0.00 0.00 4.37
754 872 3.017581 GAGGGTCTGGGCATGGGT 61.018 66.667 0.00 0.00 0.00 4.51
791 921 1.471676 GGAGTAGATCCCACTGCAACG 60.472 57.143 10.56 0.00 43.01 4.10
941 1082 2.039624 GTGGAGGAGGAGAGGGCA 59.960 66.667 0.00 0.00 0.00 5.36
943 1084 0.686112 GACTGTGGAGGAGGAGAGGG 60.686 65.000 0.00 0.00 0.00 4.30
947 1088 0.901124 CCAAGACTGTGGAGGAGGAG 59.099 60.000 0.00 0.00 41.65 3.69
948 1089 1.194781 GCCAAGACTGTGGAGGAGGA 61.195 60.000 7.59 0.00 41.65 3.71
949 1090 1.298014 GCCAAGACTGTGGAGGAGG 59.702 63.158 7.59 0.00 41.65 4.30
1047 1195 2.435586 CAGAGGAGCACAAGCCCG 60.436 66.667 0.00 0.00 43.56 6.13
1066 1214 2.094286 CAGTGAGCTTACCTGAGGTGAG 60.094 54.545 18.24 18.24 41.47 3.51
1078 1226 2.654079 CGGAGGAGGCAGTGAGCTT 61.654 63.158 0.00 0.00 44.79 3.74
1084 1232 0.032017 ACCTAATCGGAGGAGGCAGT 60.032 55.000 7.67 0.00 39.15 4.40
1103 1251 4.571984 CAGTCAAACAGTGTTGTGAGATCA 59.428 41.667 9.79 0.00 37.67 2.92
1110 1258 4.846779 ACAAACAGTCAAACAGTGTTGT 57.153 36.364 9.79 0.00 46.36 3.32
1160 1322 6.008696 TCCCTTTCTTTCTACAGGACAAAA 57.991 37.500 0.00 0.00 0.00 2.44
1301 1465 5.296531 CCACATTCCACGAATCATAACATGA 59.703 40.000 0.00 0.00 44.55 3.07
1314 1478 6.618287 ATCAAATATGTACCACATTCCACG 57.382 37.500 0.00 0.00 39.88 4.94
1334 1498 9.289782 TCTCATCTGAATTAGACGAGATAATCA 57.710 33.333 0.00 0.00 46.57 2.57
1383 1557 5.324409 TGGTAGATCTTGGCAAGAAACAAT 58.676 37.500 31.57 16.45 41.63 2.71
1422 1680 9.114952 TGATTATTTTGGAATAAGTGCGTATCA 57.885 29.630 0.00 0.00 40.15 2.15
1434 1692 8.302515 AGCTCAACTGATGATTATTTTGGAAT 57.697 30.769 0.00 0.00 37.44 3.01
1511 1769 1.005340 GTGCTTCCTGCTCGATCAAG 58.995 55.000 0.00 0.00 43.37 3.02
1517 1775 2.811317 GACGGTGCTTCCTGCTCG 60.811 66.667 0.00 0.00 43.37 5.03
1555 1813 0.106669 AGAGGGGGCGATTTTAAGGC 60.107 55.000 0.00 0.00 0.00 4.35
1572 1830 1.152271 ACAGAAGGAAGGGGAAGGAGA 59.848 52.381 0.00 0.00 0.00 3.71
1573 1831 1.662686 ACAGAAGGAAGGGGAAGGAG 58.337 55.000 0.00 0.00 0.00 3.69
1574 1832 3.285290 TTACAGAAGGAAGGGGAAGGA 57.715 47.619 0.00 0.00 0.00 3.36
1575 1833 3.432326 CGATTACAGAAGGAAGGGGAAGG 60.432 52.174 0.00 0.00 0.00 3.46
1576 1834 3.197983 ACGATTACAGAAGGAAGGGGAAG 59.802 47.826 0.00 0.00 0.00 3.46
1577 1835 3.178865 ACGATTACAGAAGGAAGGGGAA 58.821 45.455 0.00 0.00 0.00 3.97
1578 1836 2.764572 GACGATTACAGAAGGAAGGGGA 59.235 50.000 0.00 0.00 0.00 4.81
1579 1837 2.481449 CGACGATTACAGAAGGAAGGGG 60.481 54.545 0.00 0.00 0.00 4.79
1580 1838 2.810650 CGACGATTACAGAAGGAAGGG 58.189 52.381 0.00 0.00 0.00 3.95
1581 1839 2.159226 AGCGACGATTACAGAAGGAAGG 60.159 50.000 0.00 0.00 0.00 3.46
1601 1859 4.658713 GCACATACACATGCTATGCTAG 57.341 45.455 9.82 0.00 38.84 3.42
1636 1894 2.669569 CGAGTTGCCACCACCCAG 60.670 66.667 0.00 0.00 0.00 4.45
1652 1910 2.029288 ATGCACCACGTCTTCTGCG 61.029 57.895 0.00 0.00 31.96 5.18
1659 1917 3.027170 CTTCGCCATGCACCACGTC 62.027 63.158 0.00 0.00 0.00 4.34
1764 2022 0.958822 GGTTGTTGGGGTTGTAGCAG 59.041 55.000 0.00 0.00 0.00 4.24
1873 2131 1.605058 CTGGGGTCGGACTTGACGAT 61.605 60.000 8.23 0.00 42.82 3.73
1931 2189 2.098117 AGCTGCAAAGAATAATGGCGTC 59.902 45.455 1.02 0.00 0.00 5.19
1932 2190 2.094675 AGCTGCAAAGAATAATGGCGT 58.905 42.857 1.02 0.00 0.00 5.68
1933 2191 2.357009 AGAGCTGCAAAGAATAATGGCG 59.643 45.455 1.02 0.00 0.00 5.69
2060 2322 2.802667 CTCCTCGCGCGACCAATTG 61.803 63.158 31.40 18.14 0.00 2.32
2176 2443 1.956477 ACATCTCCAACAACAGGCAAC 59.044 47.619 0.00 0.00 0.00 4.17
2190 2477 5.636965 CGATCAGTAAATGGATGGACATCTC 59.363 44.000 11.67 3.65 37.92 2.75
2206 2503 3.755112 ACGGAGAGAGATCGATCAGTA 57.245 47.619 26.47 0.00 0.00 2.74
2226 2523 5.196779 TGGAATGGATTAATAAGTCCCCCAA 59.803 40.000 12.25 0.00 33.45 4.12
2232 2529 9.788960 GACAAACTTGGAATGGATTAATAAGTC 57.211 33.333 0.00 0.00 0.00 3.01
2247 2544 9.802039 ATAAATAAGTAACAGGACAAACTTGGA 57.198 29.630 0.00 0.00 34.23 3.53
2294 2597 1.524002 CCCACATCTGGAGCACGAT 59.476 57.895 0.00 0.00 40.55 3.73
2378 2798 0.110688 CACGACTGCACACAATTCCG 60.111 55.000 0.00 0.00 0.00 4.30
2380 2800 2.639751 GAACACGACTGCACACAATTC 58.360 47.619 0.00 0.00 0.00 2.17
2457 2914 1.811558 CGCATCCGATGGAAGTGGAAT 60.812 52.381 10.41 0.00 34.34 3.01
2481 2938 5.388225 TTCATTTCGTTTTCTTTTGCAGC 57.612 34.783 0.00 0.00 0.00 5.25
2485 2942 8.439286 TGAACCTTTTCATTTCGTTTTCTTTTG 58.561 29.630 0.00 0.00 36.79 2.44
2491 2948 7.093992 TCAAGTGAACCTTTTCATTTCGTTTT 58.906 30.769 0.00 0.00 43.72 2.43
2510 2967 1.831389 CGGTGGAGTGCGTTCAAGTG 61.831 60.000 0.00 0.00 0.00 3.16
2641 3114 8.763601 AGGGAGTAATATAGAAGGCATTGATAC 58.236 37.037 0.00 0.00 0.00 2.24
2645 3118 6.410540 GGAGGGAGTAATATAGAAGGCATTG 58.589 44.000 0.00 0.00 0.00 2.82
2646 3119 5.187967 CGGAGGGAGTAATATAGAAGGCATT 59.812 44.000 0.00 0.00 0.00 3.56
2647 3120 4.712337 CGGAGGGAGTAATATAGAAGGCAT 59.288 45.833 0.00 0.00 0.00 4.40
2648 3121 4.087182 CGGAGGGAGTAATATAGAAGGCA 58.913 47.826 0.00 0.00 0.00 4.75
2649 3122 4.087907 ACGGAGGGAGTAATATAGAAGGC 58.912 47.826 0.00 0.00 0.00 4.35
2650 3123 6.494146 AGAAACGGAGGGAGTAATATAGAAGG 59.506 42.308 0.00 0.00 0.00 3.46
2651 3124 7.527568 AGAAACGGAGGGAGTAATATAGAAG 57.472 40.000 0.00 0.00 0.00 2.85
2652 3125 9.425248 TTTAGAAACGGAGGGAGTAATATAGAA 57.575 33.333 0.00 0.00 0.00 2.10
2653 3126 9.597681 ATTTAGAAACGGAGGGAGTAATATAGA 57.402 33.333 0.00 0.00 0.00 1.98
2658 3131 9.338622 CAATTATTTAGAAACGGAGGGAGTAAT 57.661 33.333 0.00 0.00 0.00 1.89
2659 3132 8.323567 ACAATTATTTAGAAACGGAGGGAGTAA 58.676 33.333 0.00 0.00 0.00 2.24
2660 3133 7.854337 ACAATTATTTAGAAACGGAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
2661 3134 6.718294 ACAATTATTTAGAAACGGAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
2662 3135 7.625828 AACAATTATTTAGAAACGGAGGGAG 57.374 36.000 0.00 0.00 0.00 4.30
2663 3136 8.411991 AAAACAATTATTTAGAAACGGAGGGA 57.588 30.769 0.00 0.00 0.00 4.20
2664 3137 9.135843 GAAAAACAATTATTTAGAAACGGAGGG 57.864 33.333 0.00 0.00 0.00 4.30
2665 3138 9.908152 AGAAAAACAATTATTTAGAAACGGAGG 57.092 29.630 0.00 0.00 0.00 4.30
2696 3169 9.760077 CGTCCTATGTAGTAGTCCATTTAAAAT 57.240 33.333 0.00 0.00 0.00 1.82
2697 3170 8.752187 ACGTCCTATGTAGTAGTCCATTTAAAA 58.248 33.333 0.00 0.00 0.00 1.52
2698 3171 8.297470 ACGTCCTATGTAGTAGTCCATTTAAA 57.703 34.615 0.00 0.00 0.00 1.52
2699 3172 7.886629 ACGTCCTATGTAGTAGTCCATTTAA 57.113 36.000 0.00 0.00 0.00 1.52
2700 3173 9.006839 CATACGTCCTATGTAGTAGTCCATTTA 57.993 37.037 0.00 0.00 0.00 1.40
2701 3174 7.504911 ACATACGTCCTATGTAGTAGTCCATTT 59.495 37.037 0.56 0.00 43.24 2.32
2702 3175 7.002879 ACATACGTCCTATGTAGTAGTCCATT 58.997 38.462 0.56 0.00 43.24 3.16
2703 3176 6.540995 ACATACGTCCTATGTAGTAGTCCAT 58.459 40.000 0.56 0.00 43.24 3.41
2704 3177 5.933617 ACATACGTCCTATGTAGTAGTCCA 58.066 41.667 0.56 0.00 43.24 4.02
2705 3178 7.969536 TTACATACGTCCTATGTAGTAGTCC 57.030 40.000 9.07 0.00 45.26 3.85
2706 3179 8.830580 TGTTTACATACGTCCTATGTAGTAGTC 58.169 37.037 9.07 2.81 45.26 2.59
2707 3180 8.737168 TGTTTACATACGTCCTATGTAGTAGT 57.263 34.615 9.07 0.00 45.26 2.73
2716 3189 9.985730 CCCTAAAATATGTTTACATACGTCCTA 57.014 33.333 4.79 0.00 41.15 2.94
2717 3190 8.488668 ACCCTAAAATATGTTTACATACGTCCT 58.511 33.333 4.79 0.00 41.15 3.85
2718 3191 8.553696 CACCCTAAAATATGTTTACATACGTCC 58.446 37.037 4.79 0.00 41.15 4.79
2719 3192 9.101655 ACACCCTAAAATATGTTTACATACGTC 57.898 33.333 4.79 0.00 41.15 4.34
2728 3201 9.975218 AGTGAATCTACACCCTAAAATATGTTT 57.025 29.630 0.00 0.00 41.12 2.83
2729 3202 9.614792 GAGTGAATCTACACCCTAAAATATGTT 57.385 33.333 0.00 0.00 41.12 2.71
2730 3203 8.768397 TGAGTGAATCTACACCCTAAAATATGT 58.232 33.333 0.00 0.00 41.12 2.29
2731 3204 9.784531 ATGAGTGAATCTACACCCTAAAATATG 57.215 33.333 0.00 0.00 41.12 1.78
2733 3206 9.832445 GAATGAGTGAATCTACACCCTAAAATA 57.168 33.333 0.00 0.00 41.12 1.40
2734 3207 8.552296 AGAATGAGTGAATCTACACCCTAAAAT 58.448 33.333 0.00 0.00 41.12 1.82
2735 3208 7.824289 CAGAATGAGTGAATCTACACCCTAAAA 59.176 37.037 0.00 0.00 39.69 1.52
2736 3209 7.331026 CAGAATGAGTGAATCTACACCCTAAA 58.669 38.462 0.00 0.00 39.69 1.85
2737 3210 6.630413 GCAGAATGAGTGAATCTACACCCTAA 60.630 42.308 0.00 0.00 39.69 2.69
2738 3211 5.163405 GCAGAATGAGTGAATCTACACCCTA 60.163 44.000 0.00 0.00 39.69 3.53
2739 3212 4.383552 GCAGAATGAGTGAATCTACACCCT 60.384 45.833 0.00 0.00 39.69 4.34
2740 3213 3.873952 GCAGAATGAGTGAATCTACACCC 59.126 47.826 0.00 0.00 39.69 4.61
2741 3214 4.764172 AGCAGAATGAGTGAATCTACACC 58.236 43.478 0.00 0.00 39.69 4.16
2742 3215 5.005203 CGAAGCAGAATGAGTGAATCTACAC 59.995 44.000 0.00 0.00 39.69 2.90
2743 3216 5.105063 CGAAGCAGAATGAGTGAATCTACA 58.895 41.667 0.00 0.00 39.69 2.74
2744 3217 5.105752 ACGAAGCAGAATGAGTGAATCTAC 58.894 41.667 0.00 0.00 39.69 2.59
2745 3218 5.330455 ACGAAGCAGAATGAGTGAATCTA 57.670 39.130 0.00 0.00 39.69 1.98
2746 3219 4.199432 ACGAAGCAGAATGAGTGAATCT 57.801 40.909 0.00 0.00 39.69 2.40
2747 3220 5.521735 ACATACGAAGCAGAATGAGTGAATC 59.478 40.000 0.00 0.00 39.69 2.52
2748 3221 5.423015 ACATACGAAGCAGAATGAGTGAAT 58.577 37.500 0.00 0.00 39.69 2.57
2749 3222 4.820897 ACATACGAAGCAGAATGAGTGAA 58.179 39.130 0.00 0.00 39.69 3.18
2750 3223 4.456280 ACATACGAAGCAGAATGAGTGA 57.544 40.909 0.00 0.00 39.69 3.41
2751 3224 5.344066 ACTACATACGAAGCAGAATGAGTG 58.656 41.667 0.00 0.00 39.69 3.51
2752 3225 5.125578 TGACTACATACGAAGCAGAATGAGT 59.874 40.000 0.00 0.00 39.69 3.41
2753 3226 5.457148 GTGACTACATACGAAGCAGAATGAG 59.543 44.000 0.00 0.00 39.69 2.90
2754 3227 5.125578 AGTGACTACATACGAAGCAGAATGA 59.874 40.000 0.00 0.00 39.69 2.57
2755 3228 5.344066 AGTGACTACATACGAAGCAGAATG 58.656 41.667 0.00 0.00 40.87 2.67
2756 3229 5.584253 AGTGACTACATACGAAGCAGAAT 57.416 39.130 0.00 0.00 0.00 2.40
2757 3230 5.161358 CAAGTGACTACATACGAAGCAGAA 58.839 41.667 0.00 0.00 0.00 3.02
2758 3231 4.217767 ACAAGTGACTACATACGAAGCAGA 59.782 41.667 0.00 0.00 0.00 4.26
2759 3232 4.486090 ACAAGTGACTACATACGAAGCAG 58.514 43.478 0.00 0.00 0.00 4.24
2760 3233 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
2761 3234 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
2762 3235 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
2763 3236 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
2764 3237 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
2765 3238 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
2766 3239 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2768 3241 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2769 3242 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2770 3243 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2771 3244 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2772 3245 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2773 3246 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2774 3247 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2775 3248 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
2776 3249 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2792 3265 9.454859 CCTCTGTTCCTAAATATTTGTCTTTCT 57.545 33.333 11.05 0.00 0.00 2.52
2793 3266 8.678199 CCCTCTGTTCCTAAATATTTGTCTTTC 58.322 37.037 11.05 0.00 0.00 2.62
2794 3267 8.390921 TCCCTCTGTTCCTAAATATTTGTCTTT 58.609 33.333 11.05 0.00 0.00 2.52
2795 3268 7.928873 TCCCTCTGTTCCTAAATATTTGTCTT 58.071 34.615 11.05 0.00 0.00 3.01
2796 3269 7.182930 ACTCCCTCTGTTCCTAAATATTTGTCT 59.817 37.037 11.05 0.00 0.00 3.41
2797 3270 7.339482 ACTCCCTCTGTTCCTAAATATTTGTC 58.661 38.462 11.05 0.00 0.00 3.18
2798 3271 7.272144 ACTCCCTCTGTTCCTAAATATTTGT 57.728 36.000 11.05 0.00 0.00 2.83
2832 3305 9.585099 CTTGATGCAAAGTAAATAGGCAAAATA 57.415 29.630 0.00 0.00 38.08 1.40
2833 3306 8.313292 TCTTGATGCAAAGTAAATAGGCAAAAT 58.687 29.630 0.00 0.00 38.08 1.82
2834 3307 7.665690 TCTTGATGCAAAGTAAATAGGCAAAA 58.334 30.769 0.00 0.00 38.08 2.44
2835 3308 7.225784 TCTTGATGCAAAGTAAATAGGCAAA 57.774 32.000 0.00 0.00 38.08 3.68
2836 3309 6.832520 TCTTGATGCAAAGTAAATAGGCAA 57.167 33.333 0.00 0.00 38.08 4.52
2837 3310 7.408756 AATCTTGATGCAAAGTAAATAGGCA 57.591 32.000 0.00 0.00 39.03 4.75
2838 3311 7.761249 ACAAATCTTGATGCAAAGTAAATAGGC 59.239 33.333 0.00 0.00 0.00 3.93
2839 3312 9.294030 GACAAATCTTGATGCAAAGTAAATAGG 57.706 33.333 0.00 0.00 0.00 2.57
2840 3313 9.844790 TGACAAATCTTGATGCAAAGTAAATAG 57.155 29.630 0.00 0.00 0.00 1.73
2841 3314 9.624697 GTGACAAATCTTGATGCAAAGTAAATA 57.375 29.630 0.00 0.00 0.00 1.40
2842 3315 7.326789 CGTGACAAATCTTGATGCAAAGTAAAT 59.673 33.333 0.00 0.00 0.00 1.40
2843 3316 6.636447 CGTGACAAATCTTGATGCAAAGTAAA 59.364 34.615 0.00 0.00 0.00 2.01
2844 3317 6.142139 CGTGACAAATCTTGATGCAAAGTAA 58.858 36.000 0.00 0.00 0.00 2.24
2845 3318 5.238432 ACGTGACAAATCTTGATGCAAAGTA 59.762 36.000 0.00 0.00 0.00 2.24
2846 3319 4.036734 ACGTGACAAATCTTGATGCAAAGT 59.963 37.500 0.00 0.00 0.00 2.66
2847 3320 4.539870 ACGTGACAAATCTTGATGCAAAG 58.460 39.130 0.00 0.00 0.00 2.77
2848 3321 4.566545 ACGTGACAAATCTTGATGCAAA 57.433 36.364 0.00 0.00 0.00 3.68
2849 3322 5.391843 CCATACGTGACAAATCTTGATGCAA 60.392 40.000 0.00 0.00 0.00 4.08
2850 3323 4.094739 CCATACGTGACAAATCTTGATGCA 59.905 41.667 0.00 0.00 0.00 3.96
2851 3324 4.094887 ACCATACGTGACAAATCTTGATGC 59.905 41.667 0.00 0.00 0.00 3.91
2852 3325 5.220662 GGACCATACGTGACAAATCTTGATG 60.221 44.000 0.00 0.00 0.00 3.07
2853 3326 4.876107 GGACCATACGTGACAAATCTTGAT 59.124 41.667 0.00 0.00 0.00 2.57
2854 3327 4.020573 AGGACCATACGTGACAAATCTTGA 60.021 41.667 0.00 0.00 0.00 3.02
2855 3328 4.253685 AGGACCATACGTGACAAATCTTG 58.746 43.478 0.00 0.00 0.00 3.02
2856 3329 4.553330 AGGACCATACGTGACAAATCTT 57.447 40.909 0.00 0.00 0.00 2.40
2857 3330 4.553330 AAGGACCATACGTGACAAATCT 57.447 40.909 0.00 0.00 0.00 2.40
2858 3331 5.622770 AAAAGGACCATACGTGACAAATC 57.377 39.130 0.00 0.00 0.00 2.17
2859 3332 7.175990 ACAATAAAAGGACCATACGTGACAAAT 59.824 33.333 0.00 0.00 0.00 2.32
2860 3333 6.487331 ACAATAAAAGGACCATACGTGACAAA 59.513 34.615 0.00 0.00 0.00 2.83
2861 3334 5.998981 ACAATAAAAGGACCATACGTGACAA 59.001 36.000 0.00 0.00 0.00 3.18
2862 3335 5.410132 CACAATAAAAGGACCATACGTGACA 59.590 40.000 0.00 0.00 0.00 3.58
2863 3336 5.640357 TCACAATAAAAGGACCATACGTGAC 59.360 40.000 0.00 0.00 0.00 3.67
2864 3337 5.795972 TCACAATAAAAGGACCATACGTGA 58.204 37.500 0.00 0.00 0.00 4.35
2865 3338 5.872617 TCTCACAATAAAAGGACCATACGTG 59.127 40.000 0.00 0.00 0.00 4.49
2866 3339 6.045072 TCTCACAATAAAAGGACCATACGT 57.955 37.500 0.00 0.00 0.00 3.57
2867 3340 6.978343 TTCTCACAATAAAAGGACCATACG 57.022 37.500 0.00 0.00 0.00 3.06
2880 3353 8.673711 CGGGAGTCAAATATTTTTCTCACAATA 58.326 33.333 21.41 0.00 0.00 1.90
2881 3354 7.176690 ACGGGAGTCAAATATTTTTCTCACAAT 59.823 33.333 21.41 12.18 40.62 2.71
2882 3355 6.488683 ACGGGAGTCAAATATTTTTCTCACAA 59.511 34.615 21.41 0.00 40.62 3.33
2883 3356 6.001460 ACGGGAGTCAAATATTTTTCTCACA 58.999 36.000 21.41 0.00 40.62 3.58
2884 3357 6.314784 CACGGGAGTCAAATATTTTTCTCAC 58.685 40.000 21.04 18.58 44.67 3.51
2885 3358 5.414454 CCACGGGAGTCAAATATTTTTCTCA 59.586 40.000 21.04 0.00 44.67 3.27
2886 3359 5.676331 GCCACGGGAGTCAAATATTTTTCTC 60.676 44.000 15.50 15.50 44.67 2.87
2887 3360 4.157840 GCCACGGGAGTCAAATATTTTTCT 59.842 41.667 0.00 0.00 44.67 2.52
2888 3361 4.082463 TGCCACGGGAGTCAAATATTTTTC 60.082 41.667 0.00 0.00 44.67 2.29
2889 3362 3.829601 TGCCACGGGAGTCAAATATTTTT 59.170 39.130 0.00 0.00 44.67 1.94
2890 3363 3.426615 TGCCACGGGAGTCAAATATTTT 58.573 40.909 0.00 0.00 44.67 1.82
2891 3364 3.080300 TGCCACGGGAGTCAAATATTT 57.920 42.857 0.00 0.00 44.67 1.40
2892 3365 2.799126 TGCCACGGGAGTCAAATATT 57.201 45.000 0.00 0.00 44.67 1.28
2893 3366 2.799126 TTGCCACGGGAGTCAAATAT 57.201 45.000 0.00 0.00 44.67 1.28
2894 3367 2.364632 CATTGCCACGGGAGTCAAATA 58.635 47.619 0.00 0.00 44.67 1.40
2895 3368 1.176527 CATTGCCACGGGAGTCAAAT 58.823 50.000 0.00 0.00 44.67 2.32
2896 3369 1.523154 GCATTGCCACGGGAGTCAAA 61.523 55.000 0.00 0.00 44.67 2.69
2897 3370 1.971167 GCATTGCCACGGGAGTCAA 60.971 57.895 0.00 0.00 44.67 3.18
2898 3371 2.359850 GCATTGCCACGGGAGTCA 60.360 61.111 0.00 0.00 44.67 3.41
2899 3372 2.359850 TGCATTGCCACGGGAGTC 60.360 61.111 6.12 0.00 44.67 3.36
2914 3387 1.605712 GGACCAGGTATATGCTCGTGC 60.606 57.143 1.71 1.71 40.20 5.34
2915 3388 1.686587 TGGACCAGGTATATGCTCGTG 59.313 52.381 0.00 0.00 0.00 4.35
2916 3389 2.082140 TGGACCAGGTATATGCTCGT 57.918 50.000 0.00 0.00 0.00 4.18
2917 3390 3.469008 TTTGGACCAGGTATATGCTCG 57.531 47.619 0.00 0.00 0.00 5.03
2938 3411 7.648142 TGATCTGTAACATTTTCGCTCTTTTT 58.352 30.769 0.00 0.00 0.00 1.94
2939 3412 7.202016 TGATCTGTAACATTTTCGCTCTTTT 57.798 32.000 0.00 0.00 0.00 2.27
2940 3413 6.801539 TGATCTGTAACATTTTCGCTCTTT 57.198 33.333 0.00 0.00 0.00 2.52
2941 3414 6.603095 GTTGATCTGTAACATTTTCGCTCTT 58.397 36.000 0.00 0.00 0.00 2.85
2942 3415 5.163953 CGTTGATCTGTAACATTTTCGCTCT 60.164 40.000 0.00 0.00 0.00 4.09
2943 3416 5.015733 CGTTGATCTGTAACATTTTCGCTC 58.984 41.667 0.00 0.00 0.00 5.03
2944 3417 4.451096 ACGTTGATCTGTAACATTTTCGCT 59.549 37.500 0.00 0.00 0.00 4.93
2945 3418 4.708601 ACGTTGATCTGTAACATTTTCGC 58.291 39.130 0.00 0.00 0.00 4.70
2946 3419 7.726079 TCTAACGTTGATCTGTAACATTTTCG 58.274 34.615 11.99 0.00 0.00 3.46
2975 3448 1.948145 TGGCGGCGAAAGTTAGAAAAA 59.052 42.857 12.98 0.00 0.00 1.94
2976 3449 1.595466 TGGCGGCGAAAGTTAGAAAA 58.405 45.000 12.98 0.00 0.00 2.29
2977 3450 1.533731 CTTGGCGGCGAAAGTTAGAAA 59.466 47.619 12.98 0.00 0.00 2.52
2978 3451 1.153353 CTTGGCGGCGAAAGTTAGAA 58.847 50.000 12.98 0.00 0.00 2.10
2979 3452 0.034337 ACTTGGCGGCGAAAGTTAGA 59.966 50.000 18.82 0.00 32.75 2.10
2980 3453 0.872388 AACTTGGCGGCGAAAGTTAG 59.128 50.000 28.31 12.66 43.13 2.34
2981 3454 1.310904 AAACTTGGCGGCGAAAGTTA 58.689 45.000 29.08 3.70 43.92 2.24
2982 3455 0.458260 AAAACTTGGCGGCGAAAGTT 59.542 45.000 25.72 25.72 46.03 2.66
2983 3456 0.458260 AAAAACTTGGCGGCGAAAGT 59.542 45.000 18.82 18.82 38.25 2.66
2984 3457 3.266282 AAAAACTTGGCGGCGAAAG 57.734 47.368 12.98 16.06 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.